MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-06 22:25:50 PST
Job id & description: 2086, traA_nrg
Query type: dna
Count queries & homologs: 1, 10
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
traA6861764CompleteunknownNOG145158ProteobacteriaEscherichia98.9198.199.17
traA6947224CompleteunknownNOG145158ProteobacteriaEscherichia97.5497.594.68
traA6566615CompleteunknownNOG145158ProteobacteriaEscherichia80.8774.1999.32
traA6884075CompleteunknownNOG145158ProteobacteriaEscherichia97.5497.5492.16
traA6894650CompleteunknownNOG145158ProteobacteriaEscherichia100.0100.090.74
traA6873969CompleteunknownNOG145158ProteobacteriaEscherichia100.0100.089.4
traA6932298CompleteunknownNOG145158ProteobacteriaEscherichia100.0100.088.56
traA6869299CompleteunknownNOG145158ProteobacteriaEscherichia95.0895.0889.43
traA6901275CompleteunknownNOG145158ProteobacteriaShigella95.0895.0488.79
traA6592921CompleteunknownNOG145158ProteobacteriaEscherichia80.8774.1986.49
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.631.46e-2076.89e-205
genusEscherichia0.6195.06e-1981.19e-195
orderEnterobacteriales0.572.08e-1612.45e-159
familyEnterobacteriaceae0.572.08e-1612.45e-159
classGammaproteobacteria0.5256.51e-1336.15e-131
phylumProteobacteria0.4042.43e-741.91e-72
speciesEscherichia_unclassified0.3066.8e-424.59e-40
speciesClostridium_hathewayi0.2812.66e-351.57e-33
speciesRuminococcus_gnavus0.2751.09e-335.72e-32
genusCoprobacillus0.2732.49e-331.18e-31
speciesClostridium_nexile0.2692.79e-321.2e-30
genusKlebsiella0.2675.61e-322.21e-30
speciesClostridium_bolteae0.2676.61e-322.4e-30
speciesKlebsiella_pneumoniae0.253.95e-281.33e-26
familyFusobacteriaceae0.254.26e-281.34e-26
phylumFusobacteria0.2464.21e-271.1e-25
classFusobacteriia0.2464.21e-271.1e-25
orderFusobacteriales0.2464.21e-271.1e-25
speciesCoprobacillus_unclassified0.2448.32e-272.07e-25
genusFusobacterium0.2449.71e-272.29e-25
speciesBacteroides_fragilis0.2413.22e-267.24e-25
speciesClostridium_symbiosum0.2265.38e-231.15e-21
speciesClostridium_ramosum0.2172.81e-215.77e-20
genusPantoea0.2147.5e-211.42e-19
speciesPantoea_unclassified0.2147.5e-211.42e-19
familyClostridiaceae0.2112.61e-204.74e-19
speciesClostridiales_bacterium_1_7_47FAA0.214.52e-207.9e-19
genusCitrobacter0.2097.21e-201.22e-18
genusClostridium0.2097.64e-201.24e-18
speciesCitrobacter_freundii0.2039.22e-191.45e-17
genusCoprococcus-0.2021.25e-181.9e-17
genusFlavonifractor0.1985.14e-187.35e-17
speciesFlavonifractor_plautii0.1985.14e-187.35e-17
genusEnterobacter0.1961.35e-171.87e-16
speciesEubacterium_siraeum-0.1942.39e-173.22e-16
speciesSubdoligranulum_unclassified-0.1933.56e-174.67e-16
speciesEnterobacter_cloacae0.1926.57e-178.38e-16
genusEubacterium-0.1891.41e-161.72e-15
familyEubacteriaceae-0.1891.42e-161.72e-15
speciesCitrobacter_unclassified0.1882.25e-162.66e-15
speciesEubacterium_ramulus-0.1864.42e-165.09e-15
genusSubdoligranulum-0.1841e-151.12e-14
genusButyrivibrio-0.1813.48e-153.82e-14
genusMegasphaera0.1771.31e-141.41e-13
speciesFusobacterium_ulcerans0.1771.38e-141.45e-13
speciesEubacterium_rectale-0.1743.5e-143.59e-13
speciesEggerthella_unclassified0.1725.95e-145.98e-13
classClostridia-0.1718.31e-148e-13
orderClostridiales-0.1718.31e-148e-13
speciesClostridium_citroniae0.1711.1e-131.04e-12
speciesDorea_longicatena-0.1691.79e-131.66e-12
speciesLachnospiraceae_bacterium_6_1_63FAA0.1682.3e-132.09e-12
speciesAnaerotruncus_unclassified-0.1673.51e-133.13e-12
genusEggerthella0.1664.74e-134.14e-12
familyRuminococcaceae-0.1641.07e-129.18e-12
speciesCoprococcus_comes-0.1622.09e-121.76e-11
phylumSynergistetes0.1586.84e-125.38e-11
classSynergistia0.1586.84e-125.38e-11
orderSynergistales0.1586.84e-125.38e-11
familySynergistaceae0.1586.84e-125.38e-11
genusPseudoflavonifractor-0.1587.18e-125.47e-11
speciesPseudoflavonifractor_capillosus-0.1587.18e-125.47e-11
genusBarnesiella-0.1578.8e-126.49e-11
speciesBarnesiella_intestinihominis-0.1578.8e-126.49e-11
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1561.21e-118.79e-11
genusDorea-0.1551.41e-111.01e-10
speciesBifidobacterium_adolescentis-0.1551.66e-111.17e-10
genusPyramidobacter0.1542.11e-111.44e-10
speciesPyramidobacter_piscolens0.1542.11e-111.44e-10
speciesEubacterium_hallii-0.1542.4e-111.62e-10
speciesSutterella_wadsworthensis-0.1515.11e-113.4e-10
genusSutterella-0.1515.98e-113.92e-10
genusWeissella0.1471.79e-101.16e-09
speciesCoprococcus_catus-0.1434.6e-102.93e-09
speciesRoseburia_hominis-0.1435.37e-103.38e-09
genusClostridiales_noname0.1427.9e-104.91e-09
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1411.04e-096.35e-09
phylumFirmicutes-0.1411.05e-096.35e-09
speciesCoprococcus_sp_ART55_1-0.141.13e-096.75e-09
speciesStreptococcus_thermophilus-0.141.16e-096.84e-09
genusCoprobacter-0.1391.39e-098e-09
speciesCoprobacter_fastidiosus-0.1391.39e-098e-09
speciesFusobacterium_varium0.1391.49e-098.43e-09
speciesBacteroides_thetaiotaomicron0.1391.5e-098.43e-09
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1391.53e-098.5e-09
speciesAlistipes_senegalensis-0.1391.61e-098.84e-09
speciesLactobacillus_salivarius0.1381.87e-091.01e-08
speciesRuminococcus_sp_5_1_39BFAA-0.1363.65e-091.96e-08
speciesAnaerostipes_unclassified0.1363.77e-092e-08
familyBacteroidales_noname-0.1354.63e-092.38e-08
genusBacteroidales_noname-0.1354.63e-092.38e-08
speciesBacteroidales_bacterium_ph8-0.1354.63e-092.38e-08
speciesClostridium_clostridioforme0.1346.37e-093.23e-08
speciesRuminococcus_lactaris-0.1346.67e-093.35e-08
speciesFusobacterium_nucleatum0.1337.64e-093.8e-08
familyBacteroidaceae0.1338.55e-094.16e-08
genusBacteroides0.1338.55e-094.16e-08
speciesMegasphaera_micronuciformis0.1329.49e-094.57e-08
familyClostridiales_noname0.1321.01e-084.82e-08
speciesKlebsiella_unclassified0.1311.33e-086.28e-08
speciesFusobacterium_mortiferum0.131.87e-088.74e-08
speciesCollinsella_aerofaciens-0.1292.14e-089.9e-08
speciesStreptococcus_infantarius0.1292.32e-081.06e-07
familyEnterococcaceae0.1282.55e-081.16e-07
genusEnterococcus0.1282.9e-081.28e-07
genusRuminococcaceae_noname-0.1282.9e-081.28e-07
speciesRuminococcaceae_bacterium_D16-0.1282.9e-081.28e-07
speciesKlebsiella_oxytoca0.1273.25e-081.42e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1273.73e-081.62e-07
speciesMegasphaera_unclassified0.1264.97e-082.13e-07
speciesAnaerostipes_hadrus-0.1265.11e-082.17e-07
genusParaprevotella-0.1256.39e-082.69e-07
speciesParaprevotella_unclassified-0.1256.49e-082.71e-07
speciesAlistipes_putredinis-0.1247.44e-083.08e-07
speciesWeissella_confusa0.1238.84e-083.63e-07
speciesBacteroides_nordii0.1239.83e-084e-07
speciesButyrivibrio_crossotus-0.1221.24e-075e-07
speciesClostridium_leptum-0.1211.47e-075.88e-07
genusBlautia0.121.87e-077.42e-07
speciesAlistipes_shahii-0.121.91e-077.51e-07
speciesEubacterium_biforme-0.1182.89e-071.13e-06
speciesLactobacillus_mucosae0.1183.03e-071.17e-06
speciesParaprevotella_clara-0.1173.52e-071.35e-06
speciesButyrivibrio_unclassified-0.1173.7e-071.41e-06
familyLeuconostocaceae0.1173.91e-071.48e-06
speciesParaprevotella_xylaniphila-0.1164.65e-071.74e-06
speciesBacteroides_pectinophilus-0.1156.15e-072.29e-06
genusFaecalibacterium-0.1156.76e-072.47e-06
speciesFaecalibacterium_prausnitzii-0.1156.76e-072.47e-06
genusCollinsella-0.1148.06e-072.93e-06
speciesDorea_formicigenerans-0.1138.67e-073.12e-06
speciesStreptococcus_anginosus0.1139.98e-073.57e-06
speciesLactococcus_garvieae0.1121.25e-064.44e-06
speciesErysipelotrichaceae_bacterium_2_2_44A0.1111.42e-065e-06
genusBilophila0.1111.5e-065.24e-06
speciesBilophila_unclassified0.111.71e-065.93e-06
speciesBifidobacterium_pseudocatenulatum0.111.74e-065.99e-06
speciesMitsuokella_unclassified-0.111.9e-066.5e-06
genusSolobacterium0.1092.47e-068.33e-06
speciesSolobacterium_moorei0.1092.47e-068.33e-06
speciesEubacterium_limosum0.1082.79e-069.34e-06
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1073.22e-061.07e-05
speciesPrevotella_bivia0.1063.93e-061.3e-05
speciesEnterobacter_aerogenes0.1064.49e-061.47e-05
speciesWeissella_cibaria0.1055.03e-061.64e-05
speciesClostridium_perfringens0.1055.72e-061.85e-05
speciesBacteroides_stercoris0.1046.25e-062.01e-05
speciesPrevotella_stercorea0.1037.67e-062.41e-05
phylumVerrucomicrobia-0.1037.85e-062.41e-05
classVerrucomicrobiae-0.1037.85e-062.41e-05
orderVerrucomicrobiales-0.1037.85e-062.41e-05
familyVerrucomicrobiaceae-0.1037.85e-062.41e-05
genusAkkermansia-0.1037.85e-062.41e-05
speciesAkkermansia_muciniphila-0.1037.85e-062.41e-05
speciesStreptococcus_lutetiensis0.1029.45e-062.88e-05
speciesAcidaminococcus_intestini0.1021.09e-053.3e-05
genusMitsuokella-0.1011.15e-053.46e-05
speciesPrevotella_buccae0.1011.3e-053.84e-05
classDeltaproteobacteria0.1011.31e-053.84e-05
orderDesulfovibrionales0.1011.31e-053.84e-05
familyDesulfovibrionaceae0.1011.31e-053.84e-05
speciesCoprobacillus_sp_29_10.11.51e-054.4e-05
speciesEnterococcus_faecium0.11.57e-054.55e-05
speciesVeillonella_parvula0.0991.64e-054.72e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.0991.76e-055.03e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.0991.86e-055.29e-05
speciesMegamonas_unclassified0.0991.88e-055.31e-05
genusMegamonas0.0991.91e-055.37e-05
speciesCoprococcus_eutactus-0.0982.07e-055.78e-05
familyLactobacillaceae0.0972.41e-056.69e-05
speciesStreptococcus_pasteurianus0.0972.47e-056.82e-05
genusAdlercreutzia-0.0972.61e-057.12e-05
speciesAdlercreutzia_equolifaciens-0.0972.61e-057.12e-05
classBacilli0.0963.03e-058.17e-05
familySiphoviridae-0.0963.03e-058.17e-05
genusC2likevirus-0.0963.09e-058.29e-05
speciesBacteroides_uniformis-0.0963.42e-059.12e-05
speciesC2likevirus_unclassified-0.0953.53e-059.36e-05
genusMorganella0.0953.62e-059.49e-05
speciesMorganella_morganii0.0953.62e-059.49e-05
orderLactobacillales0.0953.71e-059.67e-05
genusLactobacillus0.0953.74e-059.7e-05
speciesAnaerotruncus_colihominis0.0953.87e-059.98e-05
speciesRuminococcus_obeum-0.0944.59e-050.000118
speciesPorphyromonas_uenonis0.0944.98e-050.000127
genusPrevotella0.0945.11e-050.000129
speciesCoprobacillus_sp_D60.0935.13e-050.000129
genusPeptoniphilus0.0935.15e-050.000129
speciesClostridium_asparagiforme0.0935.33e-050.000133
speciesLactobacillus_crispatus0.0935.37e-050.000133
genusRuminococcus-0.0926.45e-050.000159
speciesParabacteroides_merdae-0.0926.55e-050.000161
familyLachnospiraceae-0.0917.99e-050.000195
familyRikenellaceae-0.099.72e-050.000235
genusAlistipes-0.099.72e-050.000235
speciesRoseburia_intestinalis-0.099.83e-050.000237
speciesBilophila_wadsworthia0.0880.0001350.000323
speciesBlautia_producta0.0880.0001480.000353
speciesMethanobrevibacter_smithii-0.0870.0001640.000389
speciesKlebsiella_sp_MS_92_30.0870.0001660.000392
familyPeptostreptococcaceae0.0870.0001790.00042
speciesEggerthella_lenta0.0860.0001810.000423
genusOdoribacter-0.0860.0001830.000425
classMethanobacteria-0.0860.0001920.00044
orderMethanobacteriales-0.0860.0001920.00044
familyMethanobacteriaceae-0.0860.0001920.00044
genusVeillonella0.0860.0001940.000442
speciesLactobacillus_amylovorus0.0860.0001960.000445
speciesOdoribacter_splanchnicus-0.0860.0002020.000456
speciesEnterococcus_faecalis0.0860.0002060.000463
speciesAcidaminococcus_fermentans0.0860.0002090.000468
speciesParabacteroides_unclassified0.0850.0002260.000503
speciesStreptococcus_mitis_oralis_pneumoniae0.0850.0002380.000527
genusMethanobrevibacter-0.0840.0002780.000613
speciesAlistipes_sp_HGB5-0.0830.0003110.000683
familyMyoviridae0.0830.0003250.00071
phylumEuryarchaeota-0.0830.0003480.000757
speciesRuminococcus_champanellensis-0.0820.0003890.000842
genusAnaerotruncus-0.0820.0004090.000881
genusClostridiaceae_noname0.0810.0004770.00102
speciesClostridiaceae_bacterium_JC1180.0810.0004770.00102
speciesClostridium_bartlettii0.080.0005540.00118
speciesEubacterium_eligens-0.080.0005710.00121
speciesBifidobacterium_dentium0.0790.0006380.00134
classEpsilonproteobacteria0.0780.0006890.00144
orderCampylobacterales0.0780.0006890.00144
genusCampylobacter0.0780.0007240.00151
speciesBifidobacterium_angulatum-0.0780.0007290.00151
familyCampylobacteraceae0.0780.000740.00153
genusProteus0.0780.0007630.00157
speciesParabacteroides_goldsteinii0.0760.000950.00194
speciesProteus_mirabilis0.0760.001020.00208
familyClostridiales_Family_XI_Incertae_Sedis0.0750.00110.00222
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0750.00110.00222
genusPeptostreptococcus0.0750.001120.00225
speciesLachnospiraceae_bacterium_1_4_56FAA0.0740.001270.00254
familyOscillospiraceae-0.0740.001330.00263
genusOscillibacter-0.0740.001330.00263
speciesOscillibacter_unclassified-0.0740.001330.00263
speciesEubacterium_dolichum0.0740.001410.00277
speciesBacteroides_plebeius0.0730.001470.00288
speciesBifidobacterium_catenulatum-0.0730.001570.00306
genusPeptostreptococcaceae_noname0.0730.00170.0033
speciesStreptococcus_australis0.0720.001890.00366
speciesEubacterium_ventriosum-0.0720.00190.00366
speciesBacteroides_salyersiae0.0710.002160.00414
familyVeillonellaceae0.070.002350.00449
speciesMegamonas_rupellensis0.070.00240.00457
genusCatenibacterium-0.0690.00270.0051
speciesCatenibacterium_mitsuokai-0.0690.00270.0051
familyBacillales_noname0.0690.002740.00513
genusGemella0.0690.002740.00513
speciesParabacteroides_sp_D13-0.0690.002880.00537
speciesVeillonella_dispar0.0680.003170.00589
familySutterellaceae-0.0680.003240.006
genusRoseburia-0.0680.003360.00619
genusPorphyromonas0.0680.003420.00628
orderCaudovirales-0.0670.003670.00671
phylumViruses_noname-0.0670.003780.00686
classViruses_noname-0.0670.003780.00686
speciesLactobacillus_sanfranciscensis0.0650.0050.00904
speciesBlautia_hydrogenotrophica-0.0650.005030.00906
speciesMegasphaera_elsdenii0.0650.005050.00906
genusAcidaminococcus0.0650.005080.00908
speciesSubdoligranulum_sp_4_3_54A2FAA0.0640.005340.00951
speciesBacteroides_intestinalis0.0640.005570.00988
speciesClostridium_sp_ATCC_BAA_4420.0640.005760.0102
speciesMegamonas_hypermegale0.0630.006610.0116
speciesTuricibacter_unclassified-0.0630.00670.0118
speciesOdoribacter_unclassified-0.0630.006790.0119
speciesGemella_morbillorum0.0620.00750.0131
speciesErysipelotrichaceae_bacterium_6_1_450.0610.007990.0139
speciesStreptococcus_salivarius0.0610.00850.0147
speciesVeillonella_atypica0.0610.008730.015
genusTuricibacter-0.060.009240.0159
speciesBacteroides_ovatus0.060.009890.0169
speciesBacteroides_xylanisolvens0.060.009940.0169
speciesAlistipes_onderdonkii-0.060.009950.0169
speciesBacteroides_sp_3_1_190.0590.01060.0179
speciesPeptostreptococcus_anaerobius0.0590.01070.018
orderBacillales0.0590.01140.0191
speciesClostridium_sp_L2_50-0.0590.01140.0191
speciesAlistipes_finegoldii-0.0580.01160.0193
genusPhascolarctobacterium-0.0570.01350.0224
speciesPhascolarctobacterium_succinatutens-0.0570.01350.0224
speciesEnterobacteria_phage_HK5440.0570.01420.0234
speciesLactococcus_phage_P680-0.0570.01420.0234
speciesBifidobacterium_breve0.0570.01440.0236
orderCoriobacteriales-0.0560.01480.0241
familyCoriobacteriaceae-0.0560.01480.0241
speciesLachnospiraceae_bacterium_1_1_57FAA0.0560.01510.0245
genusLambdalikevirus0.0550.01660.0268
speciesLactococcus_lactis-0.0550.01820.0293
speciesLactococcus_phage_jm2-0.0540.020.0321
genusAnaerostipes-0.0530.0210.0336
familyPropionibacteriaceae-0.0530.02120.0338
speciesCampylobacter_concisus0.0520.02330.037
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0520.02370.0375
speciesLactobacillus_rhamnosus-0.0520.02430.0384
classNegativicutes0.0510.02690.0422
orderSelenomonadales0.0510.02690.0422
speciesMethanobrevibacter_unclassified-0.0510.02760.0431
speciesPeptostreptococcus_stomatis0.0510.0280.0436
speciesHaemophilus_parainfluenzae0.0510.02820.0438
speciesAlistipes_indistinctus-0.0510.02830.0438
orderPasteurellales0.050.02910.0447
familyPasteurellaceae0.050.02910.0447
orderBurkholderiales-0.050.03080.0472
genusHaemophilus0.0490.03310.0506
speciesKlebsiella_phage_KP36-0.0490.03460.0527
speciesVeillonella_unclassified0.0490.0350.0531
speciesStreptococcus_parasanguinis-0.0480.03630.0549
speciesPrevotella_copri0.0480.03690.0556
speciesTuricibacter_sanguinis-0.0480.0380.0571
classBacteroidia0.0470.04260.0636
orderBacteroidales0.0470.04260.0636
phylumBacteroidetes0.0470.04270.0636
speciesLactobacillus_oris0.0470.04360.0647
familyStreptococcaceae0.0460.04640.0687
speciesPropionibacterium_freudenreichii-0.0460.04820.0711
speciesHaemophilus_paraphrohaemolyticus0.0450.05130.0754
genusAggregatibacter0.0450.05240.0768
speciesLactococcus_phage_phi7-0.0450.05320.0777
speciesPorphyromonas_asaccharolytica0.0450.0540.0787
speciesLactobacillus_fermentum0.0440.05540.0805
genusPropionibacterium-0.0440.05560.0805
speciesEggerthella_sp_1_3_56FAA-0.0440.05650.0816
genusStreptococcus0.0440.05670.0816
speciesErysipelotrichaceae_bacterium_3_1_530.0440.05860.0841
classBetaproteobacteria-0.0430.06010.086
speciesDesulfovibrio_piger-0.0430.06230.0888
speciesAggregatibacter_segnis0.0430.06360.0903
genusSiphoviridae_noname-0.0430.06370.0903
speciesLeuconostoc_lactis0.0420.06670.0943
speciesOlsenella_unclassified-0.0420.07120.1
speciesEubacterium_cylindroides-0.0410.07290.102
speciesCollinsella_tanakaei0.0410.07430.104
familyActinomycetaceae0.040.08130.114
speciesLactobacillus_vaginalis0.040.08470.118
speciesBacteroides_sp_2_1_22-0.0390.08980.125
speciesBacteroides_coprocola0.0390.09170.127
speciesParabacteroides_johnsonii0.0390.09460.131
speciesBacteroides_barnesiae-0.0380.09750.134
genusTunalikevirus-0.0380.09820.135
speciesBacteroides_oleiciplenus0.0380.0990.135
speciesPeptostreptococcaceae_noname_unclassified-0.0370.1080.147
orderAeromonadales0.0360.120.163
genusLachnospiraceae_noname0.0360.1240.168
speciesOdoribacter_laneus0.0350.1250.169
genusOlsenella-0.0350.1260.17
speciesLactobacillus_plantarum0.0350.1270.171
speciesRoseburia_inulinivorans-0.0350.1310.176
speciesBacteroides_vulgatus0.0350.1320.176
orderViruses_noname-0.0350.1350.18
speciesLactococcus_phage_bIL67-0.0340.1390.185
speciesLactobacillus_gasseri0.0340.1460.194
genusActinomyces0.0330.1490.196
speciesBifidobacterium_animalis-0.0330.1490.196
speciesBacteroides_salanitronis-0.0330.150.197
genusAcidaminococcaceae_unclassified-0.0330.1550.203
speciesBifidobacterium_longum-0.0330.1550.203
speciesRuminococcus_bromii-0.0320.160.209
speciesBacteroides_massiliensis0.0320.1710.222
genusOxalobacter-0.0310.1750.226
speciesOxalobacter_formigenes-0.0310.1750.226
genusBifidobacterium-0.0310.1860.24
speciesBacteroides_caccae0.030.1880.242
genusGordonibacter-0.030.190.243
speciesGordonibacter_pamelaeae-0.030.190.243
genusActinobacillus0.0290.2050.261
speciesActinobacillus_unclassified0.0290.2050.261
genusMyoviridae_noname0.0290.2060.261
speciesHoldemania_sp_AP20.0290.2110.267
familyOxalobacteraceae-0.0290.2150.27
genusButyricicoccus0.0290.2150.27
speciesButyricicoccus_pullicaecorum0.0290.2150.27
classErysipelotrichia0.0280.2190.273
orderErysipelotrichales0.0280.2190.273
familyErysipelotrichaceae0.0280.2190.273
speciesRuminococcus_torques0.0280.2260.281
speciesOscillibacter_sp_KLE_1745-0.0270.2410.299
orderBifidobacteriales-0.0270.2430.299
familyBifidobacteriaceae-0.0270.2430.299
speciesRoseburia_unclassified-0.0270.2440.3
genusMethanosphaera-0.0270.2460.301
speciesMethanosphaera_stadtmanae-0.0270.2460.301
genusLeuconostoc0.0270.2470.301
speciesCollinsella_unclassified0.0260.2540.308
speciesBacteroides_clarus0.0260.2540.308
familyPorphyromonadaceae-0.0260.2640.32
familyAcidaminococcaceae-0.0250.2860.345
speciesParvimonas_unclassified0.0250.2870.346
genusParvimonas0.0250.2890.347
genusStaphylococcus-0.0240.290.347
genusDialister-0.0240.2930.35
phylumActinobacteria-0.0240.2980.354
classActinobacteria-0.0240.2980.354
familyViruses_noname-0.0240.30.355
genusViruses_noname-0.0240.30.355
genusBurkholderiales_noname0.0230.3140.37
speciesBurkholderiales_bacterium_1_1_470.0230.3140.37
speciesHaemophilus_sputorum0.0230.3150.37
speciesBacteroides_finegoldii0.0220.3340.391
speciesDorea_unclassified-0.0220.3380.395
familyBurkholderiales_noname0.0220.340.396
speciesBacteroides_fluxus0.0220.3420.398
genusHoldemania0.0210.360.417
genusSutterellaceae_unclassified-0.0210.370.428
speciesBacteroides_cellulosilyticus0.020.3790.437
speciesLactobacillus_acidophilus-0.020.3820.44
orderPseudomonadales0.020.3930.449
familyPodoviridae0.020.3930.449
speciesAcidaminococcus_unclassified-0.020.3930.449
genusCoriobacteriaceae_noname0.020.3960.45
speciesParabacteroides_distasonis0.020.3960.45
speciesOscillibacter_sp_KLE_1728-0.020.3980.452
genusParasutterella0.0190.4040.456
speciesParasutterella_excrementihominis0.0190.4040.456
speciesBifidobacterium_bifidum0.0190.4130.465
speciesStreptococcus_vestibularis0.0190.4170.469
speciesBacteroides_sp_4_3_47FAA0.0190.4230.474
orderActinomycetales0.0180.4240.474
speciesSlackia_piriformis-0.0180.4480.5
genusParabacteroides0.0170.450.501
speciesBacteroides_coprophilus-0.0170.4530.503
speciesStreptococcus_gordonii0.0170.4610.511
speciesCoriobacteriaceae_bacterium_phI0.0160.4770.527
speciesStreptococcus_mutans0.0160.4870.537
speciesAlistipes_sp_AP11-0.0150.510.561
speciesAlistipes_unclassified0.0150.5120.562
genusLactococcus-0.0150.5180.567
familyStaphylococcaceae-0.0150.5220.57
speciesBacteroides_sp_1_1_6-0.0140.5360.584
speciesErysipelotrichaceae_bacterium_21_3-0.0140.540.587
speciesRuminococcus_callidus-0.0140.5490.596
speciesMegamonas_funiformis0.0140.5540.6
genusSlackia0.0140.5590.604
speciesClostridium_spiroforme-0.0130.5620.606
speciesDialister_succinatiphilus-0.0130.5880.632
genusButyricimonas0.0120.5950.637
speciesButyricimonas_synergistica0.0120.5950.637
genusErysipelotrichaceae_noname-0.0120.6160.656
speciesEubacterium_sp_3_1_310.0120.6170.656
speciesDialister_invisus-0.0120.6170.656
familyPrevotellaceae-0.0110.6320.67
speciesLactococcus_phage_936_sensu_lato-0.0110.6480.686
familyMicrococcaceae0.010.660.697
speciesCollinsella_intestinalis0.010.6640.7
speciesBacteroides_eggerthii-0.010.6730.707
genusRothia0.010.6770.71
speciesStreptococcus_sanguinis0.0090.7060.739
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0080.7160.748
speciesLactobacillus_casei_paracasei-0.0080.7350.766
speciesRuminococcus_sp_JC3040.0070.7490.779
speciesClostridium_sp_KLE_17550.0070.7570.785
speciesHoldemania_unclassified-0.0070.770.797
speciesDesulfovibrio_desulfuricans0.0070.7740.799
speciesMitsuokella_multacida-0.0060.8080.833
speciesLactobacillus_delbrueckii-0.0050.8140.837
speciesLactobacillus_ruminis-0.0050.8160.837
speciesSutterella_parvirubra-0.0050.8450.865
genusSuccinatimonas-0.0040.860.877
speciesSuccinatimonas_hippei-0.0040.860.877
familySuccinivibrionaceae-0.0030.8860.901
speciesLactobacillus_reuteri0.0030.8930.906
speciesHoldemania_filiformis0.0030.9040.916
speciesBacteroides_dorei0.0020.9480.958
speciesStreptococcus_phage_Sfi210.0010.9510.959
speciesRothia_mucilaginosa0.0010.960.966
speciesBacteroides_faecis-0.0010.9730.977
speciesParabacteroides_sp_20_3-0.0010.9750.977
genusDesulfovibrio0.00.9970.997
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.004743473182060.001303417443664.76322735889e-098432.7633
Crohns diseaseSpain17660.02220189355770.006341010925351.11491616867e-058122.69992
Type II diabetesChina1831850.02364328060470.008441294158120.00787822101286341111.2727
ObesityDenmark1691230.001808243825340.0005668294195480.0315129297606390912.8539
Rheumatoid arthritisChina127980.007171121037720.003636839533160.0732127545915419013.9727
Liver cirrhosisChina1201140.02498234469540.004602573080680.2369766369231997467.0966
Type II diabetesSweden53920.001536110939720.003614146234430.6872820443042109471.4324
Ulcerative colitisSpain78660.001868130502760.006341010925350.7621993799412496682.358
Colorectal cancerAustria64350.02787700739170.009598504917460.8774592265792663490.1137
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382