MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-07 21:45:26 PST
Job id & description: 2088, bt
Query type: protein
Count queries & homologs: 1, 2
Min % identity & max e-value: 98%, 1e-5
Min % query & target coverage: 90%, 90%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
dpp4331672CompleteK01278COG1506BacteroidetesBacteroides100.0100.099.86
dpp4296321CompleteK01278COG1506BacteroidetesBacteroides100.096.0898.64
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesBacteroides_thetaiotaomicron0.7510.00.0
familyBacteroidaceae0.65.52e-1838.68e-181
genusBacteroides0.65.52e-1838.68e-181
phylumBacteroidetes0.4933.57e-1152.81e-113
classBacteroidia0.4933.57e-1152.81e-113
orderBacteroidales0.4933.57e-1152.81e-113
genusParabacteroides0.4561.3e-968.77e-95
phylumFirmicutes-0.4214.9e-812.89e-79
familyPorphyromonadaceae0.4113.14e-771.65e-75
speciesBacteroides_ovatus0.4021.1e-735.19e-72
classClostridia-0.3713.58e-621.41e-60
orderClostridiales-0.3713.59e-621.41e-60
speciesBacteroides_xylanisolvens0.3535.9e-562.14e-54
genusDorea-0.356.32e-552.13e-53
speciesBacteroides_uniformis0.3375.4e-511.7e-49
speciesDorea_longicatena-0.3353.29e-509.71e-49
phylumActinobacteria-0.3321.96e-495.14e-48
classActinobacteria-0.3321.96e-495.14e-48
genusCoprococcus-0.3292.04e-485.07e-47
familyRuminococcaceae-0.3239.98e-472.36e-45
speciesRuminococcus_obeum-0.3183.19e-457.17e-44
orderCoriobacteriales-0.3065.93e-421.22e-40
familyCoriobacteriaceae-0.3065.93e-421.22e-40
speciesCoprococcus_catus-0.3069.99e-421.96e-40
speciesCollinsella_aerofaciens-0.3034.94e-419.33e-40
speciesClostridiales_bacterium_1_7_47FAA0.3021.01e-401.83e-39
speciesCoprococcus_comes-0.3012.07e-403.62e-39
speciesEubacterium_hallii-0.291.52e-372.56e-36
speciesClostridium_bolteae0.2886.07e-379.88e-36
speciesClostridium_citroniae0.2877.12e-371.12e-35
genusCollinsella-0.2844.37e-366.65e-35
orderBifidobacteriales-0.2821.36e-351.95e-34
familyBifidobacteriaceae-0.2821.36e-351.95e-34
speciesDorea_formicigenerans-0.2822.07e-352.87e-34
genusBifidobacterium-0.2812.55e-353.44e-34
speciesBacteroides_vulgatus0.2799.83e-351.29e-33
familyLachnospiraceae-0.2781.98e-342.53e-33
genusFlavonifractor0.2732.1e-332.54e-32
speciesFlavonifractor_plautii0.2732.1e-332.54e-32
speciesBifidobacterium_adolescentis-0.2718.24e-339.72e-32
speciesClostridium_symbiosum0.2661.11e-311.28e-30
speciesClostridium_asparagiforme0.262.88e-303.24e-29
speciesBacteroides_nordii0.2594.59e-305.04e-29
speciesBacteroides_faecis0.2546.87e-297.37e-28
familyActinomycetaceae-0.2531.27e-281.33e-27
speciesBacteroides_fragilis0.2512.78e-282.85e-27
genusActinomyces-0.255.83e-285.85e-27
speciesBilophila_unclassified0.2497.52e-287.39e-27
phylumEuryarchaeota-0.2499.7e-289.34e-27
genusRuminococcus-0.2481.56e-271.47e-26
speciesAnaerostipes_hadrus-0.2472.75e-272.55e-26
genusBilophila0.2464.26e-273.87e-26
orderActinomycetales-0.2431.65e-261.47e-25
genusMethanobrevibacter-0.2413.24e-262.78e-25
classMethanobacteria-0.2413.36e-262.78e-25
orderMethanobacteriales-0.2413.36e-262.78e-25
familyMethanobacteriaceae-0.2413.36e-262.78e-25
speciesMethanobrevibacter_smithii-0.245.8e-264.72e-25
speciesClostridium_hathewayi0.2399.69e-267.75e-25
genusOlsenella-0.2355.59e-254.4e-24
familyRikenellaceae0.2331.89e-241.44e-23
genusAlistipes0.2331.89e-241.44e-23
speciesOdoribacter_splanchnicus0.2332.25e-241.69e-23
speciesOlsenella_unclassified-0.2322.44e-241.8e-23
genusClostridiales_noname0.2291.05e-237.62e-23
genusOdoribacter0.2255.57e-233.98e-22
speciesRuminococcus_sp_5_1_39BFAA-0.2256.85e-234.83e-22
familyClostridiales_noname0.2241.15e-227.98e-22
speciesSubdoligranulum_unclassified-0.2222.74e-221.87e-21
orderLactobacillales-0.2222.96e-222e-21
classDeltaproteobacteria0.2213.9e-222.52e-21
orderDesulfovibrionales0.2213.9e-222.52e-21
familyDesulfovibrionaceae0.2213.9e-222.52e-21
speciesBacteroides_stercoris0.225.63e-223.59e-21
classBacilli-0.225.98e-223.76e-21
speciesEubacterium_ramulus-0.2181.21e-217.51e-21
genusSubdoligranulum-0.2172.13e-211.31e-20
speciesEubacterium_biforme-0.2164.34e-212.63e-20
speciesBifidobacterium_longum-0.2131.48e-208.84e-20
genusPeptostreptococcaceae_noname-0.2045.41e-193.19e-18
genusErysipelotrichaceae_noname-0.2036.56e-193.82e-18
classErysipelotrichia-0.2021.09e-186.12e-18
orderErysipelotrichales-0.2021.09e-186.12e-18
familyErysipelotrichaceae-0.2021.09e-186.12e-18
speciesBacteroides_dorei0.2021.14e-186.33e-18
familyPeptostreptococcaceae-0.2011.56e-188.56e-18
orderBurkholderiales0.22.31e-181.25e-17
speciesParabacteroides_distasonis0.22.81e-181.51e-17
familyEubacteriaceae-0.1993.34e-181.77e-17
classBetaproteobacteria0.1993.39e-181.78e-17
genusEubacterium-0.1993.9e-182.02e-17
speciesBilophila_wadsworthia0.1984.57e-182.34e-17
speciesFusobacterium_ulcerans0.1977.13e-183.62e-17
genusLactobacillus-0.1943.02e-171.52e-16
familyOscillospiraceae0.1917.32e-173.6e-16
genusOscillibacter0.1917.32e-173.6e-16
familyLactobacillaceae-0.1919.58e-174.66e-16
speciesParabacteroides_unclassified0.1865.5e-162.65e-15
genusCatenibacterium-0.1848.95e-164.22e-15
speciesCatenibacterium_mitsuokai-0.1848.95e-164.22e-15
familyStreptococcaceae-0.1812.77e-151.29e-14
familySutterellaceae0.1813.1e-151.43e-14
speciesEubacterium_siraeum-0.1813.61e-151.65e-14
speciesLachnospiraceae_bacterium_5_1_63FAA-0.183.77e-151.71e-14
speciesBacteroides_cellulosilyticus0.1795.64e-152.54e-14
speciesAnaerotruncus_colihominis0.1787.87e-153.5e-14
genusStreptococcus-0.1734.93e-142.15e-13
speciesAnaerostipes_unclassified0.1734.93e-142.15e-13
genusAnaerostipes-0.1726.99e-143.03e-13
genusButyrivibrio-0.171.25e-135.36e-13
speciesBacteroides_intestinalis0.171.56e-136.62e-13
speciesAlistipes_putredinis0.171.57e-136.62e-13
speciesOscillibacter_unclassified0.1682.8e-131.17e-12
speciesEubacterium_rectale-0.1673.83e-131.59e-12
phylumFusobacteria0.1649.48e-133.82e-12
classFusobacteriia0.1649.48e-133.82e-12
orderFusobacteriales0.1649.48e-133.82e-12
genusSolobacterium-0.1641.06e-124.2e-12
speciesSolobacterium_moorei-0.1641.06e-124.2e-12
speciesStreptococcus_parasanguinis-0.1621.79e-127.04e-12
genusAdlercreutzia-0.163.25e-121.25e-11
speciesAdlercreutzia_equolifaciens-0.163.25e-121.25e-11
familyBacillales_noname-0.163.29e-121.25e-11
genusGemella-0.163.29e-121.25e-11
speciesRuminococcus_torques-0.163.35e-121.26e-11
speciesStreptococcus_sanguinis-0.163.66e-121.37e-11
speciesMethanobrevibacter_unclassified-0.163.9e-121.45e-11
familyFusobacteriaceae0.1594.28e-121.58e-11
genusBlautia-0.1594.45e-121.63e-11
genusMethanosphaera-0.1595.11e-121.84e-11
speciesMethanosphaera_stadtmanae-0.1595.11e-121.84e-11
speciesFusobacterium_varium0.1595.34e-121.91e-11
genusPhascolarctobacterium-0.1586.99e-122.46e-11
speciesPhascolarctobacterium_succinatutens-0.1586.99e-122.46e-11
genusClostridiaceae_noname0.1578.67e-123.01e-11
speciesClostridiaceae_bacterium_JC1180.1578.67e-123.01e-11
speciesStreptococcus_salivarius-0.1551.45e-115e-11
speciesStreptococcus_thermophilus-0.1551.69e-115.78e-11
speciesRuminococcus_gnavus0.1551.84e-116.25e-11
orderBacillales-0.1542.06e-116.95e-11
genusFusobacterium0.1542.22e-117.43e-11
speciesCoprococcus_sp_ART55_1-0.1514.61e-111.53e-10
speciesPeptostreptococcaceae_noname_unclassified-0.157.04e-112.32e-10
speciesBacteroides_caccae0.1481.27e-104.16e-10
speciesRuminococcus_bromii-0.1462.1e-106.84e-10
speciesBacteroides_oleiciplenus0.1462.19e-107.08e-10
speciesClostridium_bartlettii-0.1462.38e-107.64e-10
phylumProteobacteria0.1418.43e-102.69e-09
speciesMitsuokella_multacida-0.141.06e-093.36e-09
genusLeuconostoc-0.141.17e-093.68e-09
genusButyricimonas0.141.19e-093.7e-09
speciesButyricimonas_synergistica0.141.19e-093.7e-09
speciesParabacteroides_merdae0.1381.83e-095.65e-09
genusParasutterella0.1382.06e-096.27e-09
speciesParasutterella_excrementihominis0.1382.06e-096.27e-09
speciesClostridium_clostridioforme0.1382.26e-096.84e-09
speciesAlistipes_onderdonkii0.1372.45e-097.37e-09
familyMicrococcaceae-0.1372.81e-098.39e-09
genusRothia-0.1372.96e-098.79e-09
speciesPropionibacterium_freudenreichii-0.1363.14e-099.26e-09
speciesButyrivibrio_crossotus-0.1345.92e-091.74e-08
speciesAlistipes_shahii0.1346.07e-091.77e-08
genusMitsuokella-0.1346.22e-091.8e-08
speciesParabacteroides_goldsteinii0.1337.69e-092.21e-08
genusPropionibacterium-0.1338.7e-092.49e-08
speciesMitsuokella_unclassified-0.1329.86e-092.8e-08
speciesLactobacillus_rhamnosus-0.1311.28e-083.62e-08
speciesStreptococcus_gordonii-0.131.53e-084.3e-08
genusBurkholderiales_noname0.1264.38e-081.22e-07
speciesBurkholderiales_bacterium_1_1_470.1264.38e-081.22e-07
speciesStreptococcus_mutans-0.1256.36e-081.76e-07
speciesBacteroides_salyersiae0.1246.63e-081.82e-07
familyBurkholderiales_noname0.1246.8e-081.86e-07
speciesBifidobacterium_bifidum-0.1238.75e-082.37e-07
speciesOscillibacter_sp_KLE_17450.1239.02e-082.43e-07
speciesClostridium_nexile0.1239.34e-082.5e-07
speciesRothia_mucilaginosa-0.1239.41e-082.51e-07
speciesTuricibacter_sanguinis-0.1221.2e-073.18e-07
speciesDorea_unclassified0.1211.49e-073.93e-07
genusTuricibacter-0.1211.61e-074.22e-07
genusLactococcus-0.121.99e-075.19e-07
speciesBifidobacterium_animalis-0.1183.02e-077.83e-07
speciesBacteroides_sp_2_1_220.1183.09e-077.97e-07
familyClostridiaceae0.1173.52e-079.03e-07
speciesClostridium_sp_L2_50-0.1174.37e-071.11e-06
speciesBacteroides_massiliensis0.1164.41e-071.12e-06
speciesStreptococcus_vestibularis-0.1164.57e-071.15e-06
speciesBifidobacterium_catenulatum-0.1155.8e-071.46e-06
genusClostridium0.1155.83e-071.46e-06
speciesAlistipes_finegoldii0.1148e-071.99e-06
speciesLactobacillus_ruminis-0.1138.91e-072.2e-06
speciesBacteroides_clarus0.1139.31e-072.29e-06
speciesBifidobacterium_dentium-0.1131.01e-062.47e-06
speciesEubacterium_sp_3_1_310.1121.11e-062.7e-06
speciesLactobacillus_delbrueckii-0.1121.32e-063.2e-06
speciesTuricibacter_unclassified-0.1121.33e-063.2e-06
familyEnterococcaceae-0.1111.46e-063.5e-06
familyLeuconostocaceae-0.1111.57e-063.74e-06
genusEnterococcus-0.111.73e-064.1e-06
phylumViruses_noname-0.111.97e-064.63e-06
classViruses_noname-0.111.97e-064.63e-06
genusSiphoviridae_noname-0.112.04e-064.77e-06
speciesCoprobacillus_unclassified0.1092.31e-065.37e-06
speciesBacteroides_pectinophilus-0.1082.95e-066.83e-06
familyPropionibacteriaceae-0.1073.71e-068.54e-06
speciesLactococcus_lactis-0.1064.83e-061.11e-05
speciesParabacteroides_johnsonii0.1054.86e-061.11e-05
genusParaprevotella-0.1055.63e-061.28e-05
speciesParaprevotella_unclassified-0.1055.72e-061.29e-05
speciesStreptococcus_mitis_oralis_pneumoniae-0.1046.11e-061.37e-05
genusHoldemania0.1038.66e-061.94e-05
speciesLactobacillus_casei_paracasei-0.1029.66e-062.15e-05
speciesHoldemania_sp_AP20.1029.69e-062.15e-05
speciesRuminococcus_callidus-0.1029.75e-062.15e-05
speciesEnterococcus_faecalis-0.1021.01e-052.22e-05
genusLachnospiraceae_noname-0.1021.04e-052.27e-05
speciesAnaerotruncus_unclassified-0.11.4e-053.05e-05
familyAcidaminococcaceae-0.11.58e-053.42e-05
speciesPrevotella_copri-0.0991.85e-053.99e-05
genusPeptostreptococcus-0.0991.88e-054.03e-05
familySiphoviridae-0.0982.07e-054.42e-05
speciesEggerthella_unclassified0.0982.08e-054.42e-05
speciesPrevotella_buccae0.0982.16e-054.57e-05
speciesFusobacterium_mortiferum0.0972.56e-055.39e-05
orderCaudovirales-0.0972.69e-055.64e-05
genusCoprobacillus0.0972.91e-056.08e-05
familyPrevotellaceae-0.0963.49e-057.25e-05
speciesEnterococcus_faecium-0.0963.5e-057.25e-05
speciesCoprococcus_eutactus-0.0953.89e-058.02e-05
speciesDialister_succinatiphilus-0.0944.44e-059.11e-05
speciesErysipelotrichaceae_bacterium_21_3-0.0944.8e-059.81e-05
speciesStreptococcus_anginosus-0.0935.25e-050.000107
genusDialister-0.0926.46e-050.000131
speciesLactococcus_phage_P680-0.0926.64e-050.000134
classNegativicutes-0.0926.84e-050.000137
orderSelenomonadales-0.0926.84e-050.000137
speciesBacteroides_finegoldii0.0918.29e-050.000165
genusEggerthella0.099.16e-050.000182
phylumVerrucomicrobia-0.090.0001050.000203
classVerrucomicrobiae-0.090.0001050.000203
orderVerrucomicrobiales-0.090.0001050.000203
familyVerrucomicrobiaceae-0.090.0001050.000203
genusAkkermansia-0.090.0001050.000203
speciesAkkermansia_muciniphila-0.090.0001050.000203
genusGordonibacter-0.0890.0001070.000205
speciesGordonibacter_pamelaeae-0.0890.0001070.000205
genusFaecalibacterium-0.0860.000190.000362
speciesFaecalibacterium_prausnitzii-0.0860.000190.000362
speciesClostridium_sp_ATCC_BAA_4420.0860.000210.000398
genusPrevotella-0.0850.0002180.000412
speciesParaprevotella_clara-0.0850.000220.000414
speciesRuminococcus_sp_JC304-0.0840.000290.000543
speciesMegamonas_rupellensis0.0830.0003410.000636
speciesBacteroides_sp_1_1_60.0820.0003610.000671
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0820.00040.00074
orderPasteurellales0.0810.0004920.000904
familyPasteurellaceae0.0810.0004920.000904
genusHaemophilus0.080.0004970.000908
speciesEubacterium_cylindroides-0.080.0004980.000908
speciesLachnospiraceae_bacterium_1_4_56FAA0.080.0005010.00091
speciesHaemophilus_parainfluenzae0.080.000510.000922
speciesOscillibacter_sp_KLE_17280.080.000530.000955
speciesEubacterium_dolichum0.0790.0005940.00107
speciesRuminococcus_champanellensis-0.0790.0006040.00108
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0790.0006260.00111
speciesMegasphaera_elsdenii-0.0780.0007140.00127
familyClostridiales_Family_XI_Incertae_Sedis-0.0780.0007960.00141
speciesLachnospiraceae_bacterium_2_1_46FAA0.0770.0008850.00156
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0770.0009260.00162
speciesGemella_morbillorum-0.0760.0009410.00165
speciesButyrivibrio_unclassified-0.0760.001040.00181
speciesClostridium_sp_KLE_17550.0750.001190.00206
speciesVeillonella_dispar0.0740.001310.00226
speciesRuminococcus_lactaris-0.0740.001340.00231
phylumSynergistetes0.0730.001470.0025
classSynergistia0.0730.001470.0025
orderSynergistales0.0730.001470.0025
familySynergistaceae0.0730.001470.0025
genusPyramidobacter0.0730.001540.0026
speciesPyramidobacter_piscolens0.0730.001540.0026
speciesLactobacillus_gasseri-0.0730.001670.00281
genusPseudoflavonifractor-0.0730.001690.00282
speciesPseudoflavonifractor_capillosus-0.0730.001690.00282
speciesBacteroides_salanitronis-0.0720.001950.00324
speciesAlistipes_indistinctus0.0710.002070.00343
speciesLachnospiraceae_bacterium_6_1_63FAA0.0710.002170.00358
speciesClostridium_ramosum0.070.002560.00421
speciesLachnospiraceae_bacterium_5_1_57FAA0.0690.002680.00439
speciesKlebsiella_pneumoniae0.0680.003060.005
speciesErysipelotrichaceae_bacterium_3_1_530.0680.003240.00527
speciesLactobacillus_plantarum-0.0680.003480.00564
speciesParvimonas_unclassified-0.0670.003810.00616
genusParvimonas-0.0670.003840.00619
orderPseudomonadales-0.0660.004260.00684
speciesMegamonas_unclassified0.0660.004360.00697
genusMegamonas0.0660.004370.00697
speciesLachnospiraceae_bacterium_2_1_58FAA0.0660.004450.00707
speciesClostridium_leptum-0.0650.005160.00817
speciesMegasphaera_micronuciformis0.0650.005230.00826
orderViruses_noname-0.0640.005390.00845
familySuccinivibrionaceae-0.0640.005390.00845
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0640.005410.00846
speciesBifidobacterium_breve-0.0640.00550.00857
genusSuccinatimonas-0.0630.006330.00978
speciesSuccinatimonas_hippei-0.0630.006330.00978
speciesParaprevotella_xylaniphila-0.0630.006340.00978
speciesLactococcus_phage_jm2-0.0630.006780.0104
speciesLactobacillus_sanfranciscensis-0.0620.007690.0118
speciesPeptostreptococcus_stomatis-0.0620.007740.0118
speciesDesulfovibrio_piger-0.0620.00780.0119
speciesStreptococcus_australis-0.060.009740.0148
speciesLactobacillus_crispatus-0.060.009850.0149
speciesVeillonella_atypica0.0590.01040.0157
speciesClostridium_spiroforme-0.0590.01140.0171
genusAggregatibacter0.0570.01310.0196
speciesBifidobacterium_angulatum-0.0570.01360.0203
speciesAggregatibacter_segnis0.0570.01440.0214
speciesRoseburia_hominis-0.0560.01510.0224
speciesLachnospiraceae_bacterium_7_1_58FAA0.0550.01670.0247
speciesSutterella_parvirubra0.0550.01690.0249
speciesKlebsiella_oxytoca-0.0550.01730.0254
speciesLactococcus_phage_936_sensu_lato-0.0540.01920.0281
speciesEggerthella_sp_1_3_56FAA-0.0540.02060.0301
genusKlebsiella0.0530.02190.0319
speciesKlebsiella_unclassified0.0530.02210.0321
speciesEscherichia_unclassified-0.0530.02240.0324
speciesBlautia_producta0.0520.0240.0346
speciesVeillonella_parvula0.0520.02480.0357
speciesAlistipes_sp_AP110.0520.02560.0367
genusVeillonella0.0520.02570.0368
speciesLactobacillus_reuteri-0.0510.02620.0374
familyVeillonellaceae-0.050.03130.0445
speciesDialister_invisus-0.0490.03290.0466
speciesLactobacillus_fermentum-0.0490.03320.0469
speciesVeillonella_unclassified0.0490.03480.049
speciesCollinsella_unclassified0.0470.04020.0565
speciesPrevotella_bivia0.0470.04150.0581
speciesCollinsella_intestinalis0.0470.0420.0587
speciesLactococcus_garvieae-0.0460.04610.0642
genusButyricicoccus0.0460.0470.0651
speciesButyricicoccus_pullicaecorum0.0460.0470.0651
speciesRoseburia_intestinalis-0.0460.04880.0673
speciesAlistipes_unclassified-0.0450.05210.0717
speciesCollinsella_tanakaei0.0440.0550.0755
speciesDesulfovibrio_desulfuricans0.0440.05910.0809
speciesAlistipes_senegalensis-0.0440.05930.0809
speciesEnterobacteria_phage_HK5440.0430.06150.0837
speciesCampylobacter_concisus0.0430.06260.0849
speciesMegamonas_hypermegale0.0430.06370.0862
speciesLeuconostoc_lactis-0.0420.07230.0975
speciesBacteroides_sp_4_3_47FAA0.0410.07370.0991
genusMorganella0.0410.07450.0996
speciesMorganella_morganii0.0410.07450.0996
speciesWeissella_cibaria-0.0410.07490.0999
speciesAcidaminococcus_fermentans-0.040.08080.107
genusC2likevirus-0.040.08510.113
speciesC2likevirus_unclassified-0.0380.09880.131
speciesFusobacterium_nucleatum0.0380.1030.136
speciesAlistipes_sp_HGB50.0370.1070.141
orderAeromonadales-0.0370.1090.143
speciesStreptococcus_infantarius0.0370.1120.146
speciesLactobacillus_amylovorus-0.0360.1160.151
speciesLactococcus_phage_phi7-0.0360.1210.157
speciesHaemophilus_sputorum0.0350.1290.167
speciesLactobacillus_mucosae-0.0350.1290.167
speciesClostridium_perfringens-0.0350.1320.17
genusRuminococcaceae_noname-0.0340.1410.181
speciesRuminococcaceae_bacterium_D16-0.0340.1410.181
speciesSlackia_piriformis-0.0340.1450.185
genusCampylobacter0.0340.1470.188
genusSutterellaceae_unclassified0.0330.1540.196
familyCampylobacteraceae0.0330.1550.197
speciesHoldemania_unclassified0.0330.1560.197
genusSlackia-0.0330.1590.201
speciesLactobacillus_acidophilus-0.0320.1610.203
speciesEubacterium_ventriosum-0.0320.1690.212
speciesHoldemania_filiformis0.0310.1750.219
speciesPorphyromonas_uenonis-0.030.2020.252
familyPodoviridae0.0290.2030.253
speciesLactobacillus_oris-0.0290.2070.257
speciesMegasphaera_unclassified-0.0290.2080.258
genusPorphyromonas-0.0290.2110.261
speciesBacteroides_barnesiae-0.0290.2170.267
speciesKlebsiella_sp_MS_92_3-0.0280.2190.269
classEpsilonproteobacteria0.0280.220.269
orderCampylobacterales0.0280.220.269
genusWeissella-0.0270.2350.287
genusBarnesiella-0.0270.2390.29
speciesBarnesiella_intestinihominis-0.0270.2390.29
speciesBacteroides_eggerthii0.0270.240.29
speciesAcidaminococcus_intestini0.0260.2560.309
speciesPorphyromonas_asaccharolytica-0.0260.270.325
speciesStreptococcus_pasteurianus0.0250.2760.331
speciesSubdoligranulum_sp_4_3_54A2FAA0.0250.2850.341
speciesBlautia_hydrogenotrophica-0.0240.3010.36
genusAcidaminococcaceae_unclassified0.0240.3060.365
genusStaphylococcus-0.0230.320.379
speciesRoseburia_unclassified-0.0230.320.379
speciesEscherichia_coli0.0210.3580.423
speciesLactobacillus_vaginalis-0.0210.3670.433
familyStaphylococcaceae-0.0210.3720.438
speciesEubacterium_limosum0.020.380.446
speciesStreptococcus_lutetiensis-0.020.3830.449
genusRoseburia0.020.3880.453
speciesBacteroides_sp_3_1_190.0190.40.466
familyViruses_noname-0.0190.4070.472
genusViruses_noname-0.0190.4070.472
speciesBacteroides_fluxus-0.0190.4090.473
familyMyoviridae-0.0190.4180.482
speciesPrevotella_stercorea-0.0190.4190.482
speciesPeptostreptococcus_anaerobius-0.0190.4220.485
speciesWeissella_confusa-0.0180.4390.503
speciesBacteroides_coprocola-0.0180.4440.507
genusCoprobacter0.0180.4490.511
speciesCoprobacter_fastidiosus0.0180.4490.511
speciesMegamonas_funiformis0.0170.4590.52
speciesRoseburia_inulinivorans0.0170.4590.52
genusProteus-0.0160.4830.545
speciesParabacteroides_sp_20_30.0150.5140.579
speciesStreptococcus_phage_Sfi21-0.0150.5170.581
classGammaproteobacteria0.0150.5210.584
speciesHaemophilus_paraphrohaemolyticus0.0150.5230.585
genusCitrobacter0.0150.530.591
speciesKlebsiella_phage_KP360.0140.5310.591
speciesOdoribacter_unclassified-0.0130.5680.631
genusOxalobacter-0.0130.5790.64
speciesOxalobacter_formigenes-0.0130.5790.64
speciesCitrobacter_unclassified0.0120.5940.655
speciesCoprobacillus_sp_29_1-0.0120.6050.666
speciesBacteroides_plebeius0.0120.6070.666
genusSutterella0.0120.6110.669
genusEscherichia0.0110.6340.693
speciesBifidobacterium_pseudocatenulatum-0.0110.6410.699
familyOxalobacteraceae-0.0110.6470.704
speciesLactobacillus_salivarius0.010.6580.714
speciesEnterobacter_cloacae-0.010.660.714
genusDesulfovibrio-0.0090.6830.738
genusPeptoniphilus0.0090.6880.741
speciesAcidaminococcus_unclassified0.0090.7020.755
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0090.7050.756
speciesEggerthella_lenta-0.0080.7150.765
speciesParabacteroides_sp_D130.0080.7240.772
speciesCoprobacillus_sp_D6-0.0080.7250.772
speciesEnterobacter_aerogenes0.0080.7340.78
speciesCitrobacter_freundii0.0080.7350.78
familyBacteroidales_noname-0.0070.760.801
genusBacteroidales_noname-0.0070.760.801
speciesBacteroidales_bacterium_ph8-0.0070.760.801
speciesErysipelotrichaceae_bacterium_6_1_45-0.0060.7970.838
speciesEubacterium_eligens-0.0060.8110.849
genusPantoea0.0050.8130.849
speciesPantoea_unclassified0.0050.8130.849
orderEnterobacteriales0.0050.8190.851
familyEnterobacteriaceae0.0050.8190.851
genusTunalikevirus0.0050.8390.87
genusMyoviridae_noname0.0050.8410.871
genusEnterobacter-0.0040.8510.879
speciesOdoribacter_laneus-0.0040.8570.883
speciesCoriobacteriaceae_bacterium_phI0.0040.8620.886
genusActinobacillus-0.0040.8750.896
speciesActinobacillus_unclassified-0.0040.8750.896
speciesProteus_mirabilis-0.0030.8820.901
genusAcidaminococcus-0.0020.9320.95
speciesSutterella_wadsworthensis-0.0010.9520.968
genusAnaerotruncus-0.0010.9570.969
speciesBacteroides_coprophilus-0.0010.9570.969
genusLambdalikevirus-0.0010.9690.979
genusMegasphaera0.0010.9780.986
speciesLactococcus_phage_bIL670.00.9860.992
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.00.9890.993
speciesLachnospiraceae_bacterium_1_1_57FAA0.00.9970.998
genusCoriobacteriaceae_noname0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01620308604980.008982865215480.02206944138881243741.7784
Crohns diseaseSpain17660.01312734774810.005030302921080.06837589348781251341.606
Type II diabetesChina1831850.01238490825420.01421137071990.1637197955561206839.8824
ObesityDenmark1691230.005834674220890.004932463440630.1713789253461003232.9881
Type II diabetesDenmark752770.007588768210940.005483559279050.2988740085781571751.5193
Colorectal cancerAustria64350.001114697373470.002065275299350.3382738753181348145.6117
Ulcerative colitisSpain78660.004051018587120.005030302921080.339767665811493849.2776
Rheumatoid arthritisChina127980.004548888974490.004406910112930.5498559049021873862.4871
Type II diabetesSweden53920.003583283840980.001871962121670.5866203134851841862.3705
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382