MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-12 00:59:13 PST
Job id & description: 2091, cyuA
Query type: dna
Count queries & homologs: 1, 3
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
cyua1332532CompleteunknownCOG3681ProteobacteriaEscherichia100.0100.097.79
cyua1591560Lack 3'-endunknownCOG3681ProteobacteriaEscherichia92.91100.092.45
cyua1339341CompleteunknownCOG3681ProteobacteriaCitrobacter99.4799.4778.52
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.830.00.0
orderEnterobacteriales0.8910.00.0
familyEnterobacteriaceae0.8910.00.0
genusEscherichia0.9530.00.0
speciesEscherichia_coli0.9550.00.0
phylumProteobacteria0.641.08e-2158.5e-214
speciesEscherichia_unclassified0.5635.22e-1573.52e-155
genusPantoea0.4283.22e-841.69e-82
speciesPantoea_unclassified0.4283.22e-841.69e-82
genusKlebsiella0.4187.74e-803.65e-78
speciesKlebsiella_pneumoniae0.3962.74e-711.18e-69
speciesRuminococcus_gnavus0.3581.55e-576.1e-56
speciesClostridium_nexile0.3213.19e-461.16e-44
speciesClostridium_bolteae0.3091.17e-423.94e-41
familyFusobacteriaceae0.3074.72e-421.49e-40
genusCoprobacillus0.3036.59e-411.94e-39
genusFusobacterium0.3011.85e-405.14e-39
phylumFusobacteria0.2997.71e-401.82e-38
classFusobacteriia0.2997.71e-401.82e-38
orderFusobacteriales0.2997.71e-401.82e-38
speciesClostridium_hathewayi0.2892.31e-375.19e-36
speciesCoprobacillus_unclassified0.2821.85e-353.97e-34
speciesClostridium_ramosum0.2716.88e-331.41e-31
genusEnterobacter0.2611.3e-302.53e-29
speciesEnterobacter_cloacae0.2611.34e-302.53e-29
speciesSubdoligranulum_unclassified-0.2587e-301.27e-28
genusCitrobacter0.2571.32e-292.31e-28
genusSubdoligranulum-0.254.52e-287.62e-27
genusButyrivibrio-0.2481.44e-272.34e-26
speciesEubacterium_siraeum-0.2463.85e-276.06e-26
speciesClostridium_symbiosum0.2448.74e-271.33e-25
speciesAnaerotruncus_unclassified-0.2422.26e-263.33e-25
speciesCitrobacter_unclassified0.2423.18e-264.55e-25
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2391.08e-251.5e-24
speciesCitrobacter_freundii0.2391.27e-251.71e-24
speciesBacteroides_fragilis0.2356.67e-258.75e-24
familyClostridiaceae0.2341.15e-241.47e-23
genusCoprococcus-0.2341.32e-241.64e-23
genusClostridium0.236.64e-248.04e-23
speciesEggerthella_unclassified0.238.47e-249.99e-23
genusEubacterium-0.2272.8e-233.22e-22
familyEubacteriaceae-0.2272.98e-233.35e-22
speciesEubacterium_ramulus-0.2241.12e-221.23e-21
speciesEubacterium_rectale-0.2231.62e-221.74e-21
genusEggerthella0.226.47e-226.79e-21
speciesFusobacterium_ulcerans0.2181.71e-211.75e-20
genusEnterococcus0.2172.57e-212.58e-20
familyEnterococcaceae0.2163.35e-213.29e-20
genusBarnesiella-0.2147.25e-216.84e-20
speciesBarnesiella_intestinihominis-0.2147.25e-216.84e-20
speciesSutterella_wadsworthensis-0.2148.7e-218.05e-20
speciesBifidobacterium_adolescentis-0.2071.25e-191.13e-18
classClostridia-0.2071.67e-191.46e-18
orderClostridiales-0.2071.67e-191.46e-18
familyRuminococcaceae-0.2071.71e-191.47e-18
genusSutterella-0.2062.33e-191.96e-18
speciesClostridiales_bacterium_1_7_47FAA0.2038.05e-196.67e-18
genusPseudoflavonifractor-0.2038.82e-197.06e-18
speciesPseudoflavonifractor_capillosus-0.2038.82e-197.06e-18
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2021.01e-187.95e-18
genusFlavonifractor0.2021.12e-188.53e-18
speciesFlavonifractor_plautii0.2021.12e-188.53e-18
genusWeissella0.2011.59e-181.19e-17
speciesButyrivibrio_unclassified-0.1993.75e-182.77e-17
familyBacteroidales_noname-0.1934.25e-172.99e-16
genusBacteroidales_noname-0.1934.25e-172.99e-16
speciesBacteroidales_bacterium_ph8-0.1934.25e-172.99e-16
speciesCoprococcus_comes-0.1925.53e-173.84e-16
genusMegasphaera0.1882.47e-161.69e-15
speciesClostridium_citroniae0.1873.46e-162.33e-15
speciesBacteroides_uniformis-0.1841.18e-157.84e-15
speciesKlebsiella_unclassified0.1822.17e-151.42e-14
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1796.34e-154.09e-14
speciesFusobacterium_varium0.1796.42e-154.09e-14
speciesLactobacillus_salivarius0.1787.91e-154.98e-14
speciesFusobacterium_nucleatum0.1781.06e-146.58e-14
speciesMitsuokella_unclassified-0.1771.44e-148.83e-14
speciesRoseburia_hominis-0.1761.63e-149.86e-14
speciesDorea_longicatena-0.1752.15e-141.28e-13
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1752.32e-141.37e-13
speciesAlistipes_putredinis-0.1752.65e-141.54e-13
speciesKlebsiella_oxytoca0.1752.85e-141.64e-13
speciesWeissella_confusa0.1734.72e-142.68e-13
familyLeuconostocaceae0.1727.51e-144.22e-13
speciesEnterococcus_faecalis0.1718.25e-144.58e-13
familyRikenellaceae-0.1711.12e-136.08e-13
genusAlistipes-0.1711.12e-136.08e-13
genusCoprobacter-0.171.21e-136.42e-13
speciesCoprobacter_fastidiosus-0.171.21e-136.42e-13
genusFaecalibacterium-0.171.55e-138.04e-13
speciesFaecalibacterium_prausnitzii-0.171.55e-138.04e-13
speciesCoprococcus_catus-0.1683.07e-131.58e-12
phylumFirmicutes-0.1673.57e-131.81e-12
speciesClostridium_perfringens0.1664.35e-132.18e-12
genusMitsuokella-0.1665.34e-132.65e-12
genusRuminococcaceae_noname-0.1656.53e-133.18e-12
speciesRuminococcaceae_bacterium_D16-0.1656.53e-133.18e-12
genusBlautia0.1657.58e-133.65e-12
speciesAlistipes_shahii-0.1657.71e-133.68e-12
speciesStreptococcus_anginosus0.1657.94e-133.75e-12
speciesStreptococcus_infantarius0.1631.18e-125.51e-12
speciesFusobacterium_mortiferum0.1631.43e-126.62e-12
speciesClostridium_leptum-0.1631.47e-126.74e-12
genusDorea-0.1631.53e-126.94e-12
speciesLachnospiraceae_bacterium_6_1_63FAA0.1612.66e-121.2e-11
speciesClostridium_clostridioforme0.1612.73e-121.22e-11
speciesLactococcus_garvieae0.1586.03e-122.66e-11
speciesAlistipes_senegalensis-0.1561.03e-114.5e-11
speciesMegasphaera_micronuciformis0.1561.31e-115.67e-11
speciesCoprococcus_sp_ART55_1-0.1551.48e-116.35e-11
speciesC2likevirus_unclassified-0.1542.22e-119.44e-11
speciesMegamonas_unclassified0.1532.98e-111.26e-10
genusMegamonas0.1533.23e-111.35e-10
speciesAnaerostipes_unclassified0.1523.79e-111.57e-10
speciesVeillonella_parvula0.1524.25e-111.74e-10
genusC2likevirus-0.1515.1e-112.08e-10
classBacilli0.156.42e-112.59e-10
phylumSynergistetes0.157.01e-112.73e-10
classSynergistia0.157.01e-112.73e-10
orderSynergistales0.157.01e-112.73e-10
familySynergistaceae0.157.01e-112.73e-10
orderLactobacillales0.157.76e-113e-10
speciesLactobacillus_mucosae0.1491.01e-103.88e-10
speciesEubacterium_hallii-0.1481.17e-104.45e-10
genusPyramidobacter0.1471.81e-106.78e-10
speciesPyramidobacter_piscolens0.1471.81e-106.78e-10
familySutterellaceae-0.1471.94e-107.21e-10
genusOdoribacter-0.1462.07e-107.63e-10
speciesAnaerostipes_hadrus-0.1452.63e-109.62e-10
genusClostridiales_noname0.1452.93e-101.06e-09
speciesWeissella_cibaria0.1444.27e-101.54e-09
speciesStreptococcus_thermophilus-0.1444.39e-101.57e-09
genusAnaerotruncus-0.1434.63e-101.64e-09
speciesEnterococcus_faecium0.1434.94e-101.74e-09
speciesRuminococcus_lactaris-0.141.08e-093.78e-09
speciesOdoribacter_splanchnicus-0.1381.85e-096.42e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1382.05e-097.06e-09
speciesDorea_formicigenerans-0.1382.23e-097.63e-09
genusMorganella0.1363.15e-091.06e-08
speciesMorganella_morganii0.1363.15e-091.06e-08
speciesButyrivibrio_crossotus-0.1363.89e-091.3e-08
speciesBifidobacterium_pseudocatenulatum0.1363.98e-091.32e-08
genusVeillonella0.1354.13e-091.36e-08
speciesParaprevotella_xylaniphila-0.1345.57e-091.83e-08
speciesCollinsella_aerofaciens-0.1346.73e-092.19e-08
speciesOscillibacter_unclassified-0.1321.03e-083.33e-08
familyBacillales_noname0.1311.24e-083.95e-08
genusGemella0.1311.24e-083.95e-08
genusSolobacterium0.1311.41e-084.44e-08
speciesSolobacterium_moorei0.1311.41e-084.44e-08
orderBurkholderiales-0.131.48e-084.63e-08
familyLactobacillaceae0.1292.12e-086.58e-08
speciesRoseburia_intestinalis-0.1282.48e-087.65e-08
speciesEubacterium_eligens-0.1283.07e-089.41e-08
speciesLachnospiraceae_bacterium_2_1_46FAA0.1273.49e-081.06e-07
classBetaproteobacteria-0.1273.53e-081.07e-07
speciesMegasphaera_unclassified0.1264.76e-081.43e-07
familyOscillospiraceae-0.1265.13e-081.52e-07
genusOscillibacter-0.1265.13e-081.52e-07
genusLactobacillus0.1255.52e-081.63e-07
genusPeptostreptococcus0.1255.87e-081.72e-07
familyClostridiales_noname0.1256.14e-081.79e-07
speciesBifidobacterium_dentium0.1256.27e-081.82e-07
familyActinomycetaceae0.1231.03e-072.96e-07
speciesEnterobacter_aerogenes0.1221.1e-073.15e-07
genusCollinsella-0.1221.3e-073.7e-07
familyPeptostreptococcaceae0.1221.31e-073.7e-07
genusPrevotella0.121.89e-075.31e-07
speciesStreptococcus_lutetiensis0.1192.43e-076.79e-07
speciesParaprevotella_unclassified-0.1192.47e-076.86e-07
genusParaprevotella-0.1183.01e-078.31e-07
genusProteus0.1183.23e-078.86e-07
speciesLachnospiraceae_bacterium_1_4_56FAA0.1173.74e-071.02e-06
genusActinomyces0.1164.44e-071.2e-06
speciesPrevotella_buccae0.1165.02e-071.35e-06
speciesRuminococcus_sp_5_1_39BFAA-0.1165.19e-071.39e-06
speciesBacteroides_stercoris0.1165.42e-071.45e-06
speciesEubacterium_ventriosum-0.1155.61e-071.49e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1148.01e-072.11e-06
speciesStreptococcus_mitis_oralis_pneumoniae0.1148.08e-072.12e-06
speciesEggerthella_lenta0.1139.66e-072.52e-06
genusRoseburia-0.1131.03e-062.67e-06
speciesLactobacillus_sanfranciscensis0.1121.14e-062.94e-06
speciesStreptococcus_pasteurianus0.1121.2e-063.08e-06
speciesEnterobacteria_phage_HK5440.1111.43e-063.65e-06
classEpsilonproteobacteria0.1111.65e-064.16e-06
orderCampylobacterales0.1111.65e-064.16e-06
familyCampylobacteraceae0.1111.66e-064.17e-06
genusCampylobacter0.111.73e-064.32e-06
speciesParaprevotella_clara-0.111.89e-064.7e-06
speciesMegamonas_rupellensis0.112.03e-065.02e-06
speciesAlistipes_onderdonkii-0.112.06e-065.06e-06
orderBacillales0.1092.15e-065.26e-06
speciesBacteroides_thetaiotaomicron0.1092.17e-065.28e-06
phylumVerrucomicrobia-0.1092.26e-065.33e-06
classVerrucomicrobiae-0.1092.26e-065.33e-06
orderVerrucomicrobiales-0.1092.26e-065.33e-06
familyVerrucomicrobiaceae-0.1092.26e-065.33e-06
genusAkkermansia-0.1092.26e-065.33e-06
speciesAkkermansia_muciniphila-0.1092.26e-065.33e-06
speciesBacteroides_intestinalis0.1082.78e-066.53e-06
familyPorphyromonadaceae-0.1083.1e-067.24e-06
speciesStreptococcus_salivarius0.1073.61e-068.39e-06
speciesLactobacillus_fermentum0.1064.04e-069.35e-06
genusPeptostreptococcaceae_noname0.1064.58e-061.05e-05
speciesKlebsiella_sp_MS_92_30.1055.17e-061.18e-05
speciesParabacteroides_merdae-0.1055.33e-061.21e-05
speciesOdoribacter_unclassified-0.1055.35e-061.21e-05
familySiphoviridae-0.1055.37e-061.21e-05
speciesMegamonas_hypermegale0.1055.82e-061.31e-05
speciesGemella_morbillorum0.1046.31e-061.41e-05
speciesClostridium_bartlettii0.1046.38e-061.42e-05
familyMyoviridae0.1047.2e-061.6e-05
speciesBlautia_producta0.1047.25e-061.6e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.1037.44e-061.63e-05
speciesPrevotella_stercorea0.1029.26e-062.02e-05
speciesProteus_mirabilis0.1029.9e-062.15e-05
speciesBacteroides_nordii0.1021.09e-052.36e-05
speciesPeptostreptococcus_stomatis0.11.52e-053.27e-05
familyLachnospiraceae-0.11.53e-053.27e-05
speciesVeillonella_unclassified0.11.53e-053.27e-05
speciesVeillonella_dispar0.0991.74e-053.7e-05
speciesBacteroides_plebeius0.0991.91e-054.04e-05
speciesAcidaminococcus_intestini0.0981.99e-054.19e-05
speciesBlautia_hydrogenotrophica-0.0982.02e-054.24e-05
speciesCoprococcus_eutactus-0.0982.38e-054.97e-05
genusPeptoniphilus0.0972.65e-055.51e-05
speciesBifidobacterium_catenulatum-0.0963.23e-056.69e-05
speciesMethanobrevibacter_smithii-0.0963.46e-057.13e-05
familyStreptococcaceae0.0953.6e-057.39e-05
speciesBacteroides_sp_3_1_190.0944.49e-059.17e-05
speciesClostridium_asparagiforme0.0935.39e-050.00011
genusPorphyromonas0.0935.5e-050.000111
speciesPrevotella_copri0.0935.56e-050.000112
genusMethanobrevibacter-0.0935.57e-050.000112
speciesClostridium_sp_L2_50-0.0926.69e-050.000134
phylumEuryarchaeota-0.0918.03e-050.00016
speciesBacteroides_salyersiae0.0918.07e-050.00016
genusCatenibacterium-0.0918.19e-050.000161
speciesCatenibacterium_mitsuokai-0.0918.19e-050.000161
speciesPorphyromonas_uenonis0.0918.8e-050.000172
speciesEubacterium_biforme-0.099.04e-050.000176
genusStreptococcus0.099.1e-050.000177
genusRuminococcus-0.099.34e-050.000181
speciesLactobacillus_amylovorus0.099.76e-050.000188
speciesEubacterium_limosum0.090.0001010.000194
speciesRoseburia_unclassified-0.0880.000130.000248
speciesStreptococcus_australis0.0880.0001470.00028
classMethanobacteria-0.0870.0001560.000293
orderMethanobacteriales-0.0870.0001560.000293
familyMethanobacteriaceae-0.0870.0001560.000293
genusAdlercreutzia-0.0870.000160.000298
speciesAdlercreutzia_equolifaciens-0.0870.000160.000298
genusSutterellaceae_unclassified-0.0860.0001930.000359
familyPropionibacteriaceae-0.0860.0002030.000376
speciesAnaerotruncus_colihominis0.0860.0002080.000383
speciesClostridium_sp_ATCC_BAA_4420.0850.0002230.00041
speciesBilophila_unclassified0.0850.000250.000457
genusBilophila0.0840.0002630.000479
speciesRuminococcus_obeum-0.0840.0002750.000499
speciesStreptococcus_gordonii0.0840.0002860.000517
speciesVeillonella_atypica0.0830.0003080.000555
speciesOlsenella_unclassified-0.0830.0003150.000565
classDeltaproteobacteria0.0820.0003720.00066
orderDesulfovibrionales0.0820.0003720.00066
familyDesulfovibrionaceae0.0820.0003720.00066
speciesLactobacillus_plantarum0.0820.0004030.000712
speciesCoprobacillus_sp_29_10.0820.0004150.000731
speciesAlistipes_sp_HGB5-0.0810.0004290.000753
speciesRoseburia_inulinivorans-0.0810.0004640.000811
speciesPrevotella_bivia0.080.0005050.00088
speciesAlistipes_finegoldii-0.080.0005730.000994
speciesPorphyromonas_asaccharolytica0.0780.000690.00119
genusPhascolarctobacterium-0.0780.00070.0012
speciesPhascolarctobacterium_succinatutens-0.0780.00070.0012
speciesLactobacillus_crispatus0.0780.000770.00132
speciesBacteroides_pectinophilus-0.0770.0008180.00139
speciesRuminococcus_champanellensis-0.0760.0009530.00162
orderActinomycetales0.0760.0009770.00165
speciesErysipelotrichaceae_bacterium_2_2_44A0.0760.001010.0017
speciesAggregatibacter_segnis0.0750.001130.0019
speciesBifidobacterium_angulatum-0.0740.001270.00213
speciesRothia_mucilaginosa0.0740.001440.00239
speciesSubdoligranulum_sp_4_3_54A2FAA0.0740.001440.00239
speciesParabacteroides_goldsteinii0.0740.001460.00242
speciesBacteroides_oleiciplenus0.0730.00160.00264
speciesCoprobacillus_sp_D60.0720.001710.00281
speciesAlistipes_indistinctus-0.0710.002090.00343
genusAggregatibacter0.0710.002120.00346
speciesBifidobacterium_breve0.070.00240.00391
speciesLactococcus_phage_936_sensu_lato-0.070.002450.00397
speciesBacteroides_coprocola0.070.002530.00409
genusLambdalikevirus0.070.002570.00414
speciesMegasphaera_elsdenii0.070.002620.00421
genusAcidaminococcaceae_unclassified-0.0690.002680.00429
genusAnaerostipes-0.0690.00270.00431
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0680.003120.00496
speciesBilophila_wadsworthia0.0680.003380.00535
speciesHaemophilus_paraphrohaemolyticus0.0680.00340.00537
speciesLactobacillus_vaginalis0.0660.004020.00632
genusParvimonas0.0660.00420.00659
speciesParvimonas_unclassified0.0660.004310.00674
speciesStreptococcus_sanguinis0.0650.004730.00737
speciesStreptococcus_vestibularis0.0650.004810.00747
familyMicrococcaceae0.0650.004850.00751
genusRothia0.0650.005140.00793
speciesBacteroides_dorei-0.0640.005430.00835
orderCaudovirales-0.0640.00550.00843
familyAcidaminococcaceae-0.0640.005520.00843
genusOlsenella-0.0620.006990.0106
speciesLactobacillus_gasseri0.0620.007040.0107
speciesCampylobacter_concisus0.0620.007630.0115
familyVeillonellaceae0.060.009840.0148
genusDialister-0.0590.01020.0153
speciesLeuconostoc_lactis0.0590.01030.0154
speciesParabacteroides_sp_D13-0.0590.01040.0155
speciesLactobacillus_oris0.0590.01050.0156
genusMyoviridae_noname0.0590.01060.0157
orderCoriobacteriales-0.0590.01110.0164
familyCoriobacteriaceae-0.0590.01110.0164
speciesLactobacillus_acidophilus-0.0580.01210.0178
speciesLachnospiraceae_bacterium_1_1_57FAA0.0580.01280.0188
speciesAcidaminococcus_fermentans0.0570.01390.0203
orderAeromonadales0.0560.01460.0213
speciesRuminococcus_bromii-0.0560.01490.0216
speciesPropionibacterium_freudenreichii-0.0560.0150.0217
speciesBifidobacterium_animalis-0.0560.0160.0231
classErysipelotrichia0.0560.01640.0235
orderErysipelotrichales0.0560.01640.0235
familyErysipelotrichaceae0.0560.01640.0235
speciesLactococcus_phage_P680-0.0550.0170.0242
speciesBacteroides_xylanisolvens0.0550.0170.0242
genusLeuconostoc0.0550.01740.0247
speciesHaemophilus_parainfluenzae0.0540.020.0283
speciesOscillibacter_sp_KLE_1728-0.0530.02230.0314
genusHaemophilus0.0530.02240.0315
speciesStreptococcus_mutans0.0530.02250.0315
phylumViruses_noname-0.0530.02260.0315
classViruses_noname-0.0530.02260.0315
speciesMegamonas_funiformis0.0520.02320.0322
speciesDesulfovibrio_piger-0.0520.02410.0334
orderPasteurellales0.0520.02470.034
familyPasteurellaceae0.0520.02470.034
speciesErysipelotrichaceae_bacterium_6_1_450.0520.02540.0349
familyBacteroidaceae0.0510.02680.0365
genusBacteroides0.0510.02680.0365
speciesBacteroides_barnesiae-0.0510.02680.0365
speciesParabacteroides_unclassified0.0510.02710.0368
speciesLactobacillus_ruminis-0.0510.02890.0391
speciesDialister_invisus-0.050.0290.0391
speciesEubacterium_dolichum0.0490.03340.0449
genusParabacteroides-0.0490.03430.046
speciesLactococcus_lactis-0.0490.03470.0464
speciesOscillibacter_sp_KLE_1745-0.0490.03560.0475
speciesBacteroides_sp_2_1_22-0.0480.03830.0509
speciesCollinsella_tanakaei0.0470.04130.0547
speciesLactococcus_phage_bIL67-0.0470.04140.0547
speciesBacteroides_sp_1_1_6-0.0470.04370.0575
speciesLactococcus_phage_jm2-0.0470.04370.0575
speciesAlistipes_sp_AP11-0.0460.04650.061
speciesErysipelotrichaceae_bacterium_21_3-0.0450.05020.0656
familyOxalobacteraceae-0.0450.05090.0664
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0450.05110.0664
genusOxalobacter-0.0450.05290.0684
speciesOxalobacter_formigenes-0.0450.05290.0684
speciesPeptostreptococcus_anaerobius0.0450.05320.0686
genusBifidobacterium-0.0450.05350.0688
speciesRuminococcus_torques0.0450.05380.069
speciesMethanobrevibacter_unclassified-0.0440.05520.0706
genusSiphoviridae_noname-0.0440.05550.0708
genusPropionibacterium-0.0440.05980.0761
orderBifidobacteriales-0.0430.06460.0817
familyBifidobacteriaceae-0.0430.06460.0817
speciesAcidaminococcus_unclassified-0.0420.06960.0878
speciesBacteroides_finegoldii0.040.08470.107
speciesParabacteroides_johnsonii0.040.08680.109
speciesTuricibacter_unclassified-0.0390.08790.11
genusAcidaminococcus0.0390.09210.115
speciesAlistipes_unclassified-0.0390.09590.119
speciesBacteroides_cellulosilyticus-0.0380.09960.124
speciesEubacterium_cylindroides-0.0370.110.136
speciesHoldemania_unclassified-0.0360.1210.15
speciesSutterella_parvirubra0.0350.1320.163
orderPseudomonadales0.0340.1370.168
genusTuricibacter-0.0340.1390.17
genusSlackia0.0340.1410.172
speciesRuminococcus_sp_JC3040.0340.1430.174
speciesBacteroides_clarus0.0340.1460.177
speciesBifidobacterium_longum-0.0340.1460.177
genusBurkholderiales_noname0.0330.1490.18
speciesBurkholderiales_bacterium_1_1_470.0330.1490.18
speciesDorea_unclassified-0.0330.1560.188
speciesBacteroides_eggerthii0.0330.1590.191
speciesBacteroides_salanitronis-0.0320.1630.195
familyBurkholderiales_noname0.0320.1660.198
genusButyricicoccus0.0320.1670.199
speciesButyricicoccus_pullicaecorum0.0320.1670.199
phylumBacteroidetes-0.0320.1730.205
classBacteroidia-0.0310.1740.205
orderBacteroidales-0.0310.1740.205
genusClostridiaceae_noname0.0310.1760.207
speciesClostridiaceae_bacterium_JC1180.0310.1760.207
speciesHoldemania_sp_AP20.0310.1770.207
phylumActinobacteria-0.0290.2060.24
classActinobacteria-0.0290.2060.24
speciesBacteroides_coprophilus0.0290.2140.249
speciesHoldemania_filiformis-0.0290.2170.252
speciesLactococcus_phage_phi7-0.0290.2180.252
speciesPeptostreptococcaceae_noname_unclassified-0.0280.230.265
genusErysipelotrichaceae_noname0.0280.2330.268
familyPodoviridae0.0260.2540.292
genusParasutterella0.0260.2630.301
speciesParasutterella_excrementihominis0.0260.2630.301
speciesEggerthella_sp_1_3_56FAA-0.0250.2720.31
speciesCoriobacteriaceae_bacterium_phI-0.0250.2890.328
speciesDesulfovibrio_desulfuricans-0.0250.2890.328
speciesHaemophilus_sputorum0.0240.290.328
speciesCollinsella_intestinalis0.0240.2960.334
speciesClostridium_sp_KLE_1755-0.0230.3260.367
speciesBacteroides_ovatus-0.0230.3290.37
genusCoriobacteriaceae_noname-0.0220.3430.385
speciesDialister_succinatiphilus-0.0210.3660.409
speciesOdoribacter_laneus0.0210.3730.416
speciesLactobacillus_reuteri0.020.3840.427
classNegativicutes0.020.3980.441
orderSelenomonadales0.020.3980.441
genusActinobacillus0.0180.4260.47
speciesActinobacillus_unclassified0.0180.4260.47
speciesBacteroides_sp_4_3_47FAA-0.0180.4490.494
speciesErysipelotrichaceae_bacterium_3_1_530.0160.4910.539
orderViruses_noname-0.0160.5010.549
genusStaphylococcus-0.0150.5050.552
speciesBacteroides_vulgatus-0.0150.5110.557
genusDesulfovibrio-0.0140.5330.58
speciesLactobacillus_rhamnosus0.0140.5420.588
genusLachnospiraceae_noname0.0140.5450.59
speciesParabacteroides_sp_20_3-0.0140.5570.601
speciesTuricibacter_sanguinis-0.0140.5580.601
speciesClostridium_spiroforme-0.0130.5660.609
speciesMitsuokella_multacida-0.0130.5730.615
speciesLactobacillus_casei_paracasei-0.0130.5780.619
genusSuccinatimonas0.0120.590.629
speciesSuccinatimonas_hippei0.0120.590.629
speciesLactobacillus_delbrueckii-0.0120.5950.633
speciesBacteroides_massiliensis0.0110.6340.672
speciesRuminococcus_callidus-0.010.6510.689
speciesBacteroides_faecis-0.010.6570.694
speciesBifidobacterium_bifidum0.0090.6850.722
speciesBacteroides_caccae0.0090.6910.726
speciesParabacteroides_distasonis-0.0090.7050.739
familyStaphylococcaceae-0.0090.7130.746
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0080.7280.76
familyPrevotellaceae0.0080.7350.766
genusButyricimonas-0.0070.7520.78
speciesButyricimonas_synergistica-0.0070.7520.78
familySuccinivibrionaceae0.0070.7540.78
genusTunalikevirus0.0070.7640.789
genusGordonibacter-0.0070.7670.789
speciesGordonibacter_pamelaeae-0.0070.7670.789
speciesEubacterium_sp_3_1_310.0060.8040.824
genusLactococcus-0.0060.8050.824
genusMethanosphaera-0.0050.8390.853
genusHoldemania-0.0050.8390.853
speciesMethanosphaera_stadtmanae-0.0050.8390.853
speciesBacteroides_fluxus-0.0040.8530.866
speciesStreptococcus_parasanguinis-0.0020.9270.939
speciesKlebsiella_phage_KP36-0.0020.9310.941
speciesSlackia_piriformis-0.0020.9330.941
familyViruses_noname0.0020.9460.95
genusViruses_noname0.0020.9460.95
speciesCollinsella_unclassified0.0010.9650.967
speciesStreptococcus_phage_Sfi210.00.9830.983
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.007451241956370.002173617981123.27257014875e-124611.51113
Crohns diseaseSpain17660.01453760357740.003796739244970.00330945409924602220.0233
Colorectal cancerAustria64350.04679630496640.007013487466090.0588584893016330911.1957
Liver cirrhosisChina1201140.01735808316760.005364226165050.08525647450941617254.325
Type II diabetesChina1831850.02232868612370.01695613086040.2118167996941364745.1006
ObesityDenmark1691230.00318377449640.00612035620530.3987292290331690855.5983
Type II diabetesSweden53920.006691269817780.007015553596920.7590062071422324978.7301
Rheumatoid arthritisChina127980.009747855580170.007619265045080.8026423305762500683.3895
Ulcerative colitisSpain78660.001201065513010.003796739244970.9416894631482905695.8501
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382