MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-13 08:03:21 PST
Job id & description: 2094, ABC transporter gene
Query type: protein
Count queries & homologs: 1, 10
Min % identity & max e-value: 50%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
query495749CompleteK00219COG0446;COG1902FirmicutesClostridium100.0100.0100.0
query494288CompleteK00219COG0446;COG1902FirmicutesClostridium100.099.8481.38
query487077CompleteK00219COG0446;COG1902unknownunknown100.0100.069.52
query497364CompleteK00219COG0446;COG1902unknownunknown100.0100.066.25
query458445CompleteK00219COG0446;COG1902unknownunknown100.097.4154.91
query490586CompleteK00219COG0446;COG1902unknownunknown97.3497.3555.84
query490314CompleteK00219COG0446;COG1902unknownunknown97.3497.3555.68
query466055CompleteK00219COG0446;COG1902unknownunknown100.097.8656.41
query492971CompleteK00219COG0446;COG1902unknownunknown100.0100.054.43
query694039Lack 3'-endK00219COG0446;COG1902unknownunknown81.3892.2158.16
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesSubdoligranulum_unclassified0.4921.2e-1145.66e-112
genusSubdoligranulum0.4916.75e-1141.59e-111
genusCoprococcus0.4621.93e-993.04e-97
genusAdlercreutzia0.4263.41e-833.22e-81
speciesAdlercreutzia_equolifaciens0.4263.41e-833.22e-81
familyRuminococcaceae0.4184.44e-803.49e-78
orderCoriobacteriales0.4142.82e-781.66e-76
familyCoriobacteriaceae0.4142.82e-781.66e-76
speciesCoprococcus_catus0.4071e-755.24e-74
speciesCoprococcus_comes0.4063.61e-751.7e-73
speciesClostridium_leptum0.3794.68e-652.01e-63
speciesRuminococcus_obeum0.3632.82e-591.11e-57
speciesEubacterium_hallii0.362.11e-587.66e-57
speciesRoseburia_hominis0.362.46e-588.29e-57
familyBacteroidales_noname0.3572.86e-577.94e-56
genusBacteroidales_noname0.3572.86e-577.94e-56
speciesBacteroidales_bacterium_ph80.3572.86e-577.94e-56
speciesRuminococcus_gnavus-0.3551.17e-563.07e-55
speciesCollinsella_aerofaciens0.3542.89e-567.18e-55
genusCollinsella0.3533.75e-568.85e-55
genusAnaerotruncus0.3512.79e-556.27e-54
classClostridia0.3491.17e-542.4e-53
orderClostridiales0.3491.17e-542.4e-53
genusRuminococcus0.3491.34e-542.64e-53
speciesDorea_longicatena0.3322.92e-495.51e-48
speciesAlistipes_senegalensis0.3277.34e-481.33e-46
genusDorea0.3278.82e-481.54e-46
phylumFusobacteria-0.3169.56e-451.5e-43
classFusobacteriia-0.3169.56e-451.5e-43
orderFusobacteriales-0.3169.56e-451.5e-43
speciesEubacterium_siraeum0.3151.95e-442.97e-43
familyFusobacteriaceae-0.3153.18e-444.69e-43
genusGordonibacter0.3113.11e-434.32e-42
speciesGordonibacter_pamelaeae0.3113.11e-434.32e-42
genusFusobacterium-0.3113.86e-435.21e-42
speciesAnaerotruncus_unclassified0.3081.73e-422.2e-41
phylumActinobacteria0.3081.77e-422.2e-41
classActinobacteria0.3081.77e-422.2e-41
speciesRuminococcus_callidus0.3073.26e-423.95e-41
familyBacteroidaceae-0.3075.3e-426.1e-41
genusBacteroides-0.3075.3e-426.1e-41
phylumFirmicutes0.3028.22e-419.24e-40
speciesDorea_formicigenerans0.2964.59e-395.04e-38
familyRikenellaceae0.2941.22e-381.28e-37
genusAlistipes0.2941.22e-381.28e-37
speciesEubacterium_ramulus0.2931.99e-382.04e-37
familyEubacteriaceae0.2884.48e-374.5e-36
genusEubacterium0.2886e-375.9e-36
speciesBifidobacterium_adolescentis0.2879.87e-379.51e-36
phylumVerrucomicrobia0.2852.59e-362.22e-35
classVerrucomicrobiae0.2852.59e-362.22e-35
orderVerrucomicrobiales0.2852.59e-362.22e-35
familyVerrucomicrobiaceae0.2852.59e-362.22e-35
genusAkkermansia0.2852.59e-362.22e-35
speciesAkkermansia_muciniphila0.2852.59e-362.22e-35
speciesRuminococcus_bromii0.2837.42e-366.25e-35
speciesEubacterium_ventriosum0.2831.17e-359.69e-35
genusHoldemania0.2772.93e-342.38e-33
speciesLachnospiraceae_bacterium_3_1_46FAA0.2764.19e-343.35e-33
familyOxalobacteraceae0.2766.03e-344.74e-33
genusOxalobacter0.2758.74e-346.65e-33
speciesOxalobacter_formigenes0.2758.74e-346.65e-33
phylumBacteroidetes-0.2724.67e-333.4e-32
classBacteroidia-0.2724.68e-333.4e-32
orderBacteroidales-0.2724.68e-333.4e-32
speciesEubacterium_rectale0.2644.3e-313.08e-30
speciesMegasphaera_micronuciformis-0.2571.15e-298.1e-29
speciesAlistipes_indistinctus0.2562.68e-291.86e-28
speciesFusobacterium_ulcerans-0.2553.31e-292.26e-28
genusBarnesiella0.2545.46e-293.63e-28
speciesBarnesiella_intestinihominis0.2545.46e-293.63e-28
speciesAlistipes_shahii0.2531.31e-288.59e-28
speciesCoprococcus_sp_ART55_10.254.43e-282.86e-27
speciesMethanobrevibacter_smithii0.255.9e-283.76e-27
classMethanobacteria0.2472.33e-271.43e-26
orderMethanobacteriales0.2472.33e-271.43e-26
familyMethanobacteriaceae0.2472.33e-271.43e-26
genusPseudoflavonifractor0.2472.39e-271.43e-26
speciesPseudoflavonifractor_capillosus0.2472.39e-271.43e-26
speciesAlistipes_putredinis0.2463.03e-271.79e-26
genusMethanobrevibacter0.2454.56e-272.66e-26
speciesCoprobacillus_unclassified-0.2449.95e-275.73e-26
speciesOscillibacter_unclassified0.2441.11e-266.31e-26
speciesHoldemania_filiformis0.2431.58e-268.88e-26
speciesRuminococcus_sp_5_1_39BFAA0.245.73e-263.18e-25
speciesAlistipes_finegoldii0.2398.81e-264.84e-25
speciesClostridium_nexile-0.2381.41e-257.65e-25
phylumEuryarchaeota0.2381.69e-259.06e-25
familyOscillospiraceae0.2363.63e-251.9e-24
genusOscillibacter0.2363.63e-251.9e-24
speciesLachnospiraceae_bacterium_7_1_58FAA0.2314.91e-242.55e-23
speciesFusobacterium_varium-0.2314.98e-242.55e-23
genusBifidobacterium0.2281.54e-237.82e-23
genusDesulfovibrio0.2281.81e-239.09e-23
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2273.06e-231.5e-22
orderBifidobacteriales0.2273.08e-231.5e-22
familyBifidobacteriaceae0.2273.08e-231.5e-22
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.2273.13e-231.51e-22
speciesAlistipes_sp_AP110.2249.33e-234.45e-22
speciesFusobacterium_mortiferum-0.2222.36e-221.11e-21
genusVeillonella-0.2223.22e-221.5e-21
speciesHaemophilus_parainfluenzae-0.2191.07e-214.95e-21
genusHaemophilus-0.2181.48e-216.78e-21
speciesClostridium_ramosum-0.2172.25e-211.02e-20
speciesVeillonella_dispar-0.2163.72e-211.67e-20
orderPasteurellales-0.2156.17e-212.72e-20
familyPasteurellaceae-0.2156.17e-212.72e-20
speciesOlsenella_unclassified0.2147.09e-213.1e-20
speciesAnaerotruncus_colihominis0.2121.61e-206.97e-20
speciesVeillonella_unclassified-0.2113.32e-201.42e-19
speciesCampylobacter_concisus-0.215.28e-202.25e-19
classDeltaproteobacteria0.2052.93e-191.21e-18
orderDesulfovibrionales0.2052.93e-191.21e-18
familyDesulfovibrionaceae0.2052.93e-191.21e-18
speciesAlistipes_onderdonkii0.2046.05e-192.48e-18
genusCoprobacillus-0.2021.18e-184.8e-18
speciesVeillonella_parvula-0.2011.78e-187.18e-18
speciesEubacterium_biforme0.22.33e-189.32e-18
speciesClostridium_sp_L2_500.22.86e-181.13e-17
speciesPrevotella_buccae-0.1994.06e-181.6e-17
genusOdoribacter0.1986.67e-182.6e-17
genusMitsuokella0.1977.32e-182.83e-17
genusOlsenella0.1961.35e-175.18e-17
speciesBifidobacterium_longum0.1942.79e-171.06e-16
genusFaecalibacterium0.1933.53e-171.32e-16
speciesFaecalibacterium_prausnitzii0.1933.53e-171.32e-16
speciesMitsuokella_unclassified0.1925.57e-172.07e-16
speciesVeillonella_atypica-0.1917.31e-172.7e-16
speciesRuminococcus_torques0.1918.51e-173.11e-16
genusRuminococcaceae_noname0.191.19e-164.29e-16
speciesRuminococcaceae_bacterium_D160.191.19e-164.29e-16
speciesMethanobrevibacter_unclassified0.1882.4e-168.58e-16
speciesOdoribacter_splanchnicus0.1841.03e-153.66e-15
speciesHoldemania_unclassified0.1831.41e-154.97e-15
genusActinobacillus-0.1771.27e-144.41e-14
speciesActinobacillus_unclassified-0.1771.27e-144.41e-14
familyLachnospiraceae0.1761.58e-145.44e-14
genusButyrivibrio0.1762.05e-147.01e-14
speciesAnaerostipes_unclassified-0.1752.24e-147.61e-14
speciesRuminococcus_lactaris0.1718.44e-142.85e-13
speciesBacteroides_fragilis-0.1711.13e-133.78e-13
speciesEubacterium_eligens0.1673.89e-131.29e-12
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1657.87e-132.6e-12
speciesParabacteroides_unclassified-0.1648.87e-132.91e-12
genusBilophila0.1612.81e-129.15e-12
genusCoprobacter0.1612.9e-129.31e-12
speciesCoprobacter_fastidiosus0.1612.9e-129.31e-12
speciesBilophila_unclassified0.1594.43e-121.41e-11
genusAggregatibacter-0.1585.58e-121.77e-11
speciesLachnospiraceae_bacterium_6_1_63FAA-0.1551.47e-114.63e-11
speciesBilophila_wadsworthia0.1532.83e-118.85e-11
speciesStreptococcus_thermophilus0.1533.13e-119.72e-11
speciesAnaerostipes_hadrus0.1533.19e-119.84e-11
speciesDesulfovibrio_desulfuricans0.1523.79e-111.16e-10
speciesHaemophilus_paraphrohaemolyticus-0.158.14e-112.48e-10
classErysipelotrichia0.1499.56e-112.86e-10
orderErysipelotrichales0.1499.56e-112.86e-10
familyErysipelotrichaceae0.1499.56e-112.86e-10
speciesDesulfovibrio_piger0.1491.09e-103.24e-10
speciesLachnospiraceae_bacterium_1_1_57FAA0.1481.11e-103.27e-10
speciesSubdoligranulum_sp_4_3_54A2FAA0.1481.44e-104.22e-10
speciesFusobacterium_nucleatum-0.1444.14e-101.21e-09
speciesBacteroides_thetaiotaomicron-0.1427.18e-102.08e-09
speciesAggregatibacter_segnis-0.141.13e-093.25e-09
familyAcidaminococcaceae0.1391.4e-094e-09
speciesHaemophilus_sputorum-0.1372.42e-096.88e-09
phylumProteobacteria-0.1355.06e-091.43e-08
speciesStreptococcus_mitis_oralis_pneumoniae-0.1311.19e-083.34e-08
genusErysipelotrichaceae_noname0.1311.3e-083.63e-08
speciesButyrivibrio_unclassified0.1311.37e-083.8e-08
speciesCoprococcus_eutactus0.1264.46e-081.23e-07
speciesPorphyromonas_asaccharolytica0.1264.6e-081.26e-07
speciesLactobacillus_salivarius-0.1264.85e-081.32e-07
speciesBacteroides_ovatus-0.1255.19e-081.41e-07
speciesMitsuokella_multacida0.1255.47e-081.48e-07
classGammaproteobacteria-0.1239.04e-082.42e-07
speciesParabacteroides_merdae0.1221.21e-073.23e-07
speciesLachnospiraceae_bacterium_2_1_46FAA-0.1211.55e-074.11e-07
speciesPropionibacterium_freudenreichii0.121.82e-074.8e-07
speciesDorea_unclassified-0.121.83e-074.8e-07
speciesKlebsiella_pneumoniae-0.1192.3e-076e-07
speciesErysipelotrichaceae_bacterium_21_30.1192.35e-076.09e-07
genusDialister0.1183.3e-078.51e-07
speciesClostridium_bolteae-0.1174.15e-071.06e-06
genusLachnospiraceae_noname0.1164.46e-071.14e-06
genusKlebsiella-0.1164.9e-071.24e-06
speciesClostridium_perfringens-0.1155.71e-071.44e-06
genusCatenibacterium0.1147.73e-071.93e-06
speciesCatenibacterium_mitsuokai0.1147.73e-071.93e-06
genusPorphyromonas0.1139.3e-072.31e-06
speciesBifidobacterium_bifidum0.1139.66e-072.39e-06
speciesBlautia_hydrogenotrophica0.1121.13e-062.78e-06
speciesBacteroides_eggerthii0.1121.3e-063.18e-06
speciesEubacterium_cylindroides0.1092.25e-065.47e-06
speciesLactobacillus_ruminis0.1073.56e-068.62e-06
speciesBifidobacterium_catenulatum0.1064.31e-061.04e-05
speciesBacteroides_vulgatus-0.1055.32e-061.27e-05
speciesStreptococcus_pasteurianus-0.1046.73e-061.6e-05
speciesDialister_succinatiphilus0.1029.25e-062.19e-05
speciesParaprevotella_unclassified0.11.36e-053.21e-05
genusCampylobacter-0.11.51e-053.55e-05
genusParaprevotella0.0991.77e-054.12e-05
speciesClostridium_symbiosum-0.0991.77e-054.12e-05
genusPantoea-0.0991.9e-054.37e-05
speciesPantoea_unclassified-0.0991.9e-054.37e-05
familyCampylobacteraceae-0.0972.87e-056.54e-05
speciesParaprevotella_xylaniphila0.0972.87e-056.54e-05
speciesParaprevotella_clara0.0963.06e-056.94e-05
classEpsilonproteobacteria-0.0953.76e-058.45e-05
orderCampylobacterales-0.0953.76e-058.45e-05
speciesClostridiales_bacterium_1_7_47FAA-0.0954.15e-059.28e-05
genusPhascolarctobacterium0.0944.74e-050.000105
speciesPhascolarctobacterium_succinatutens0.0944.74e-050.000105
speciesEggerthella_lenta0.0935.78e-050.000127
speciesStreptococcus_infantarius-0.0926.66e-050.000146
genusLeuconostoc0.0926.94e-050.000152
speciesLactobacillus_mucosae-0.0917.58e-050.000165
genusMegasphaera-0.0917.98e-050.000173
speciesAcidaminococcus_fermentans0.0918.12e-050.000175
familySiphoviridae0.099.16e-050.000197
speciesErysipelotrichaceae_bacterium_6_1_450.099.36e-050.0002
speciesBifidobacterium_animalis0.0890.0001060.000225
speciesLachnospiraceae_bacterium_5_1_63FAA0.0890.0001110.000235
genusLactococcus0.0890.0001120.000236
speciesPeptostreptococcus_anaerobius0.0890.0001240.00026
speciesButyrivibrio_crossotus0.0880.0001430.000299
speciesLactococcus_phage_P6800.0870.0001620.000337
genusSiphoviridae_noname0.0870.0001730.000358
speciesClostridium_clostridioforme-0.0860.0001840.000379
genusAcidaminococcus0.0860.0001950.0004
speciesBacteroides_xylanisolvens-0.0860.0002060.000421
speciesParabacteroides_goldsteinii0.0850.000250.000509
speciesLactobacillus_plantarum0.0830.0003030.000614
speciesParabacteroides_johnsonii0.0820.0003580.000722
phylumViruses_noname0.0820.0003620.000724
classViruses_noname0.0820.0003620.000724
speciesClostridium_asparagiforme0.0820.0003650.000727
genusTuricibacter0.080.0005060.001
speciesBacteroides_intestinalis0.080.0005670.00112
genusPropionibacterium0.0790.0006310.00124
speciesStreptococcus_lutetiensis-0.0790.0006580.00129
genusAnaerostipes0.0780.0006960.00136
speciesBacteroides_stercoris-0.0780.0007410.00144
speciesEubacterium_dolichum-0.0780.0007460.00144
speciesTuricibacter_unclassified0.0770.0008220.00158
speciesBacteroides_cellulosilyticus0.0770.0008960.00172
genusParabacteroides-0.0760.0009730.00186
genusButyricimonas0.0750.001170.00222
speciesButyricimonas_synergistica0.0750.001170.00222
speciesLactococcus_lactis0.0740.001380.00261
speciesLactococcus_phage_jm20.0740.001450.00273
genusPyramidobacter0.0740.001470.00274
speciesPyramidobacter_piscolens0.0740.001470.00274
speciesRuminococcus_champanellensis0.0730.001480.00275
speciesRoseburia_intestinalis0.0730.001490.00276
genusFlavonifractor-0.0730.001580.0029
speciesFlavonifractor_plautii-0.0730.001580.0029
speciesLactobacillus_casei_paracasei0.0730.001640.003
speciesBlautia_producta-0.0730.001690.00308
genusParvimonas0.0720.001820.0033
speciesParvimonas_unclassified0.0720.001850.00335
genusMethanosphaera0.0720.001970.00354
speciesMethanosphaera_stadtmanae0.0720.001970.00354
genusButyricicoccus-0.0710.002080.0037
speciesButyricicoccus_pullicaecorum-0.0710.002080.0037
speciesDialister_invisus0.0710.00220.0039
speciesEnterobacter_aerogenes-0.070.002380.00421
speciesC2likevirus_unclassified0.070.00260.00458
speciesEubacterium_limosum0.0680.003070.00539
speciesOscillibacter_sp_KLE_1728-0.0680.003180.00556
genusC2likevirus0.0680.003210.00559
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0670.003640.00632
familyMyoviridae-0.0660.004490.00776
genusMorganella-0.0650.004950.0085
speciesMorganella_morganii-0.0650.004950.0085
orderEnterobacteriales-0.0640.005280.009
familyEnterobacteriaceae-0.0640.005280.009
phylumSynergistetes0.0640.005680.00954
classSynergistia0.0640.005680.00954
orderSynergistales0.0640.005680.00954
familySynergistaceae0.0640.005680.00954
speciesOdoribacter_laneus0.0640.005980.01
speciesTuricibacter_sanguinis0.0630.006820.0114
familyLeuconostocaceae0.0610.00860.0143
speciesBacteroides_pectinophilus0.060.009160.0152
classBetaproteobacteria-0.060.009610.0159
speciesLactobacillus_fermentum-0.0590.01070.0176
speciesPorphyromonas_uenonis0.0590.01120.0184
speciesPrevotella_stercorea-0.0580.01170.0191
genusCoriobacteriaceae_noname0.0580.0120.0195
speciesClostridium_bartlettii0.0580.01210.0196
orderCaudovirales0.0580.01290.0209
genusMyoviridae_noname-0.0570.01310.021
speciesRuminococcus_sp_JC3040.0570.01310.021
genusBlautia0.0570.01360.0218
speciesRoseburia_inulinivorans0.0570.01420.0226
familyClostridiales_Family_XI_Incertae_Sedis0.0570.01430.0227
speciesClostridium_citroniae0.0560.01510.0239
speciesLactobacillus_oris-0.0550.01690.0267
genusClostridiales_noname-0.0550.01710.0269
familyPrevotellaceae0.0550.01780.0279
speciesStreptococcus_phage_Sfi210.0550.01820.0284
genusRoseburia0.0540.01860.029
orderViruses_noname0.0540.01890.0293
speciesLactococcus_phage_phi70.0540.01910.0296
speciesCoriobacteriaceae_bacterium_phI0.0540.02020.0312
genusAcidaminococcaceae_unclassified0.0530.02080.032
speciesBacteroides_clarus0.0530.02180.0334
genusProteus-0.0530.02190.0335
speciesCollinsella_intestinalis-0.0530.0230.035
speciesProteus_mirabilis-0.0520.02330.0354
orderBurkholderiales-0.0520.02370.0359
speciesMegamonas_unclassified-0.0520.02530.0382
speciesBacteroides_oleiciplenus-0.0520.02540.0382
genusMegamonas-0.0510.02660.0399
genusEscherichia-0.050.02920.0436
speciesErysipelotrichaceae_bacterium_2_2_44A0.0490.03290.049
familySutterellaceae-0.0490.03560.0528
speciesEscherichia_coli-0.0480.0360.0533
speciesLactobacillus_vaginalis-0.0480.03650.0538
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0480.03910.0575
familyLactobacillaceae0.0470.04270.0626
genusLactobacillus0.0460.04440.0649
speciesLachnospiraceae_bacterium_5_1_57FAA0.0450.04980.0725
speciesLactobacillus_delbrueckii0.0450.05020.0729
speciesLactococcus_phage_936_sensu_lato0.0450.05040.073
speciesBifidobacterium_breve-0.0450.05330.0769
speciesCoprobacillus_sp_29_10.0440.05510.0793
speciesKlebsiella_sp_MS_92_3-0.0440.05570.0799
speciesLactococcus_garvieae0.0440.05590.08
speciesBacteroides_barnesiae0.0430.06430.0917
speciesLactobacillus_crispatus-0.0430.06460.0918
speciesAcidaminococcus_unclassified0.0420.06690.0948
speciesPeptostreptococcus_stomatis-0.0420.06920.0978
speciesParabacteroides_distasonis-0.0410.07440.105
speciesLactobacillus_sanfranciscensis0.0410.07680.108
speciesStreptococcus_gordonii-0.0410.0790.111
speciesSutterella_parvirubra-0.040.08230.115
speciesClostridium_hathewayi-0.040.08670.121
speciesRothia_mucilaginosa-0.0390.09140.127
speciesCollinsella_unclassified-0.0390.09180.127
speciesSutterella_wadsworthensis0.0390.09510.131
speciesStreptococcus_sanguinis-0.0390.09590.132
speciesClostridium_sp_ATCC_BAA_442-0.0390.0960.132
speciesMegasphaera_elsdenii0.0380.1030.141
speciesLactobacillus_reuteri0.0360.1150.157
speciesBacteroides_coprophilus0.0360.1220.166
familyStaphylococcaceae0.0350.1310.178
speciesBifidobacterium_angulatum0.0350.1340.181
speciesCitrobacter_unclassified-0.0340.1360.183
classNegativicutes0.0340.1390.185
orderSelenomonadales0.0340.1390.185
familyPeptostreptococcaceae0.0340.1390.185
speciesMegamonas_rupellensis-0.0340.1390.185
speciesOscillibacter_sp_KLE_17450.0340.1390.185
familyClostridiaceae-0.0340.1420.188
speciesMegasphaera_unclassified0.0340.1460.193
speciesEscherichia_unclassified0.0340.1470.194
genusClostridium-0.0330.150.197
genusStaphylococcus0.0330.1540.201
speciesBacteroides_nordii0.0330.1540.201
speciesParabacteroides_sp_D130.0320.1610.21
speciesPeptostreptococcaceae_noname_unclassified0.0320.1680.218
orderLactobacillales0.0320.1690.218
familyBacillales_noname-0.0320.1690.218
genusGemella-0.0320.1690.218
genusEnterobacter-0.0310.1770.228
speciesLactobacillus_gasseri-0.0310.1820.233
classBacilli0.0310.1860.238
speciesBacteroides_caccae0.030.1890.241
speciesEnterobacter_cloacae-0.030.1930.245
familyMicrococcaceae-0.030.1940.245
speciesBacteroides_plebeius-0.030.1940.245
speciesPrevotella_copri0.030.1960.247
familyPropionibacteriaceae0.030.1990.25
genusPeptostreptococcaceae_noname0.030.20.251
genusRothia-0.030.2020.253
speciesStreptococcus_anginosus-0.0290.2050.256
genusSutterella0.0290.2110.263
speciesStreptococcus_vestibularis-0.0290.2150.267
speciesBacteroides_faecis0.0280.2230.276
familyPorphyromonadaceae0.0280.2330.288
speciesOdoribacter_unclassified0.0270.2350.289
genusCitrobacter-0.0270.2360.289
speciesCoprobacillus_sp_D60.0270.2360.289
speciesSlackia_piriformis0.0260.2640.323
speciesBacteroides_uniformis0.0260.270.329
speciesAcidaminococcus_intestini0.0250.2740.333
speciesBacteroides_salanitronis0.0240.2910.353
genusPeptostreptococcus-0.0240.2920.353
speciesBifidobacterium_dentium-0.0240.2990.361
orderAeromonadales-0.0240.3070.37
speciesLactobacillus_rhamnosus0.0230.320.384
speciesStreptococcus_mutans-0.0230.3280.393
orderBacillales-0.0230.3290.393
genusPeptoniphilus0.0220.3520.42
genusSutterellaceae_unclassified0.0210.3560.423
familyActinomycetaceae0.0210.3590.426
speciesPrevotella_bivia0.020.3840.454
speciesBacteroides_salyersiae0.020.390.46
speciesCitrobacter_freundii-0.0190.40.471
orderActinomycetales0.0190.4030.473
familySuccinivibrionaceae0.0190.4090.479
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0190.4120.48
speciesBacteroides_sp_2_1_220.0190.4130.48
speciesBacteroides_finegoldii0.0190.4130.48
genusParasutterella0.0190.4180.484
speciesParasutterella_excrementihominis0.0190.4180.484
genusSolobacterium0.0190.420.484
speciesSolobacterium_moorei0.0190.420.484
speciesKlebsiella_oxytoca-0.0190.4240.487
speciesBacteroides_sp_1_1_6-0.0180.430.493
genusLambdalikevirus-0.0180.4360.498
speciesEggerthella_sp_1_3_56FAA0.0170.4580.522
speciesStreptococcus_australis-0.0170.4630.527
speciesStreptococcus_parasanguinis-0.0170.4680.531
genusActinomyces0.0170.4730.535
speciesCollinsella_tanakaei0.0160.4910.554
familyVeillonellaceae-0.0160.4950.558
speciesLactococcus_phage_bIL67-0.0150.520.584
speciesWeissella_confusa-0.0140.5320.596
speciesKlebsiella_unclassified-0.0140.5460.61
genusSlackia0.0140.5480.61
speciesWeissella_cibaria-0.0140.5490.61
speciesLeuconostoc_lactis0.0140.5490.61
speciesLactobacillus_acidophilus0.0140.5540.614
speciesAlistipes_unclassified-0.0140.5580.615
genusSuccinatimonas0.0140.5590.615
speciesSuccinatimonas_hippei0.0140.5590.615
speciesClostridium_spiroforme0.0130.5620.617
speciesGemella_morbillorum0.0130.5680.622
speciesErysipelotrichaceae_bacterium_3_1_53-0.0130.570.623
speciesLactobacillus_amylovorus-0.0130.5810.633
genusWeissella-0.0120.6020.655
familyPodoviridae-0.0120.6070.659
speciesEggerthella_unclassified-0.0120.6130.664
speciesParabacteroides_sp_20_30.0110.6470.698
speciesBacteroides_coprocola-0.0110.6480.698
speciesRoseburia_unclassified0.010.6570.706
speciesEnterococcus_faecalis-0.010.660.706
speciesMegamonas_hypermegale-0.010.6610.706
speciesBacteroides_massiliensis0.010.6610.706
speciesStreptococcus_salivarius0.0090.6820.727
speciesClostridium_sp_KLE_17550.0080.7240.77
genusBurkholderiales_noname0.0080.7340.777
speciesBurkholderiales_bacterium_1_1_470.0080.7340.777
orderPseudomonadales-0.0080.7450.787
familyViruses_noname-0.0070.7490.787
genusViruses_noname-0.0070.7490.787
familyBurkholderiales_noname0.0070.7510.788
speciesAlistipes_sp_HGB50.0070.7530.788
speciesHoldemania_sp_AP2-0.0070.7670.801
genusPrevotella0.0070.7740.806
speciesKlebsiella_phage_KP360.0070.7760.807
genusClostridiaceae_noname-0.0060.7810.808
speciesClostridiaceae_bacterium_JC118-0.0060.7810.808
familyClostridiales_noname-0.0060.8010.827
speciesBifidobacterium_pseudocatenulatum-0.0050.8340.859
speciesBacteroides_fluxus0.0040.8460.87
speciesBacteroides_sp_4_3_47FAA0.0040.8680.891
speciesEubacterium_sp_3_1_31-0.0030.8960.917
familyStreptococcaceae0.0030.9050.925
genusTunalikevirus-0.0030.9090.927
genusEggerthella-0.0030.9110.927
speciesBacteroides_sp_3_1_19-0.0030.9130.927
familyEnterococcaceae-0.0020.9320.944
genusEnterococcus-0.0020.9380.948
speciesBacteroides_dorei0.0020.940.948
speciesEnterococcus_faecium0.0010.9490.955
speciesEnterobacteria_phage_HK544-0.0010.9510.955
genusStreptococcus0.0010.9560.958
speciesMegamonas_funiformis-0.0010.9610.961
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.0008945142505580.004033086347254.44941175471e-0914955.022
Crohns diseaseSpain17660.002170177503680.004184563315530.00960761379568801726.6567
ObesityDenmark1691230.005369478133910.004350020864080.0931260571495703823.1429
Type II diabetesDenmark752770.007174404292230.004969738030830.1121061523031009833.1006
Type II diabetesChina1831850.004631126408620.00378682276820.131899107141082135.7613
Colorectal cancerAustria64350.006562853647670.008389864351950.4960541532651817261.4833
Ulcerative colitisSpain78660.004888847270260.004184563315530.6539317025642279175.1831
Rheumatoid arthritisChina127980.007594590590.007237824895970.8663056131792687089.6055
Type II diabetesSweden53920.008033775634860.007092201821020.8996409968832689091.0599
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382