MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-13 08:27:10 PST
Job id & description: 2095, ABC transporter
Query type: protein
Count queries & homologs: 1, 13
Min % identity & max e-value: 50%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
query_id450882CompleteK00219COG0446;COG1902FirmicutesClostridium100.0100.099.85
query_id430850CompleteK00219COG0446;COG1902FirmicutesClostridium100.098.3681.85
query_id450400CompleteK00219COG0446;COG1902unknownunknown100.0100.078.82
query_id431938CompleteK00219COG0446;COG1902unknownunknown100.0100.071.68
query_id446832CompleteK00219COG0446;COG1902unknownunknown99.8599.5569.34
query_id446221CompleteK00219COG0446;COG1902unknownunknown99.8599.5569.18
query_id278271CompleteK00219COG0446;COG1902unknownunknown99.8584.469.03
query_id272388CompleteK00219COG0446;COG1902unknownunknown99.8583.7668.88
query_id414385CompleteK00219COG0446;COG1902unknownunknown99.8599.5666.32
query_id444911CompleteK00219COG0446;COG1902unknownunknown99.8599.5567.12
query_id444806CompleteK00219COG0446;COG1902unknownunknown99.8599.5566.97
query_id448390Lack 5'-endK00219COG0446;COG1902unknownunknown99.8598.9452.94
query_id519620Lack 3'-endK00219COG0446;COG1902unknownunknown95.7699.6853.54
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesSubdoligranulum_unclassified0.5156.24e-1272.95e-124
genusSubdoligranulum0.5142.29e-1265.4e-124
genusCoprococcus0.4757.13e-1061.12e-103
familyRuminococcaceae0.4341.29e-861.46e-84
genusAdlercreutzia0.4331.86e-861.46e-84
speciesAdlercreutzia_equolifaciens0.4331.86e-861.46e-84
orderCoriobacteriales0.4284.58e-842.7e-82
familyCoriobacteriaceae0.4284.58e-842.7e-82
speciesCoprococcus_catus0.4261.6e-838.39e-82
speciesCoprococcus_comes0.4162.99e-791.41e-77
speciesClostridium_leptum0.3846.43e-672.76e-65
speciesRuminococcus_obeum0.3811.26e-654.96e-64
classClostridia0.3722.38e-628.02e-61
orderClostridiales0.3722.38e-628.02e-61
speciesEubacterium_hallii0.3715.1e-621.6e-60
speciesRoseburia_hominis0.3692.12e-616.25e-60
genusCollinsella0.3686.4e-611.78e-59
speciesCollinsella_aerofaciens0.3671.03e-602.7e-59
genusAnaerotruncus0.3632.03e-595.04e-58
genusRuminococcus0.3624.35e-591.03e-57
speciesRuminococcus_gnavus-0.361.73e-583.89e-57
familyBacteroidales_noname0.3521.67e-553.28e-54
genusBacteroidales_noname0.3521.67e-553.28e-54
speciesBacteroidales_bacterium_ph80.3521.67e-553.28e-54
speciesDorea_longicatena0.3431.02e-521.93e-51
genusDorea0.3414.61e-528.37e-51
phylumFusobacteria-0.3353.07e-505e-49
classFusobacteriia-0.3353.07e-505e-49
orderFusobacteriales-0.3353.07e-505e-49
speciesAlistipes_senegalensis0.3322.3e-493.62e-48
familyFusobacteriaceae-0.3314.3e-496.55e-48
speciesEubacterium_siraeum0.3316.08e-498.97e-48
genusFusobacterium-0.3276.22e-488.9e-47
speciesAnaerotruncus_unclassified0.3245.25e-477.29e-46
phylumFirmicutes0.321.16e-451.56e-44
familyBacteroidaceae-0.3191.95e-452.49e-44
genusBacteroides-0.3191.95e-452.49e-44
phylumActinobacteria0.3183.73e-454.51e-44
classActinobacteria0.3183.73e-454.51e-44
speciesDorea_formicigenerans0.3143.91e-444.61e-43
genusGordonibacter0.3139.82e-441.1e-42
speciesGordonibacter_pamelaeae0.3139.82e-441.1e-42
phylumVerrucomicrobia0.3075.42e-425.33e-41
classVerrucomicrobiae0.3075.42e-425.33e-41
orderVerrucomicrobiales0.3075.42e-425.33e-41
familyVerrucomicrobiaceae0.3075.42e-425.33e-41
genusAkkermansia0.3075.42e-425.33e-41
speciesAkkermansia_muciniphila0.3075.42e-425.33e-41
speciesEubacterium_ramulus0.3052.01e-411.94e-40
phylumBacteroidetes-0.2955.43e-394.94e-38
classBacteroidia-0.2955.44e-394.94e-38
orderBacteroidales-0.2955.44e-394.94e-38
familyOxalobacteraceae0.2941.22e-381.09e-37
genusOxalobacter0.2941.74e-381.49e-37
speciesOxalobacter_formigenes0.2941.74e-381.49e-37
speciesRuminococcus_callidus0.2932.22e-381.87e-37
speciesBifidobacterium_adolescentis0.2924.17e-383.45e-37
speciesRuminococcus_bromii0.2917.47e-386.08e-37
speciesLachnospiraceae_bacterium_3_1_46FAA0.2893.08e-372.46e-36
familyEubacteriaceae0.2878.74e-376.88e-36
genusEubacterium0.2861.18e-369.13e-36
speciesEubacterium_ventriosum0.2861.67e-361.27e-35
familyRikenellaceae0.2821.71e-351.26e-34
genusAlistipes0.2821.71e-351.26e-34
genusHoldemania0.285.67e-354.12e-34
speciesMethanobrevibacter_smithii0.2732.27e-331.62e-32
classMethanobacteria0.271.1e-327.52e-32
orderMethanobacteriales0.271.1e-327.52e-32
familyMethanobacteriaceae0.271.1e-327.52e-32
genusMethanobrevibacter0.271.33e-328.97e-32
speciesMegasphaera_micronuciformis-0.2651.58e-311.05e-30
speciesAlistipes_indistinctus0.2628.2e-315.37e-30
speciesFusobacterium_ulcerans-0.2628.3e-315.37e-30
phylumEuryarchaeota0.2594.57e-302.91e-29
genusBarnesiella0.2554.9e-293.04e-28
speciesBarnesiella_intestinihominis0.2554.9e-293.04e-28
speciesCoprococcus_sp_ART55_10.2521.91e-281.17e-27
speciesHoldemania_filiformis0.2522.14e-281.29e-27
genusPseudoflavonifractor0.2512.49e-281.47e-27
speciesPseudoflavonifractor_capillosus0.2512.49e-281.47e-27
speciesAlistipes_shahii0.254.34e-282.53e-27
speciesLachnospiraceae_bacterium_7_1_58FAA0.2481.18e-276.79e-27
speciesEubacterium_rectale0.2481.56e-278.87e-27
genusDesulfovibrio0.2441.14e-266.41e-26
speciesRuminococcus_sp_5_1_39BFAA0.2431.25e-266.94e-26
speciesClostridium_nexile-0.2431.29e-267.08e-26
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2413.27e-261.77e-25
speciesOscillibacter_unclassified0.2373.04e-251.63e-24
speciesFusobacterium_varium-0.2364.31e-252.29e-24
speciesAlistipes_putredinis0.2356e-253.15e-24
speciesCoprobacillus_unclassified-0.2356.35e-253.29e-24
speciesFusobacterium_mortiferum-0.2356.62e-253.4e-24
speciesAlistipes_finegoldii0.2341e-245.08e-24
speciesHaemophilus_parainfluenzae-0.2331.69e-248.49e-24
genusHaemophilus-0.2332.14e-241.06e-23
genusVeillonella-0.2332.21e-241.09e-23
genusBifidobacterium0.2322.92e-241.42e-23
orderBifidobacteriales0.2315.22e-242.49e-23
familyBifidobacteriaceae0.2315.22e-242.49e-23
orderPasteurellales-0.236.7e-243.13e-23
familyPasteurellaceae-0.236.7e-243.13e-23
speciesVeillonella_dispar-0.2264e-231.85e-22
familyOscillospiraceae0.2265.19e-232.36e-22
genusOscillibacter0.2265.19e-232.36e-22
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.2256.14e-232.76e-22
speciesOlsenella_unclassified0.225.28e-222.35e-21
speciesVeillonella_unclassified-0.225.72e-222.52e-21
speciesCampylobacter_concisus-0.2172.09e-219.13e-21
speciesVeillonella_parvula-0.2164.29e-211.86e-20
speciesMethanobrevibacter_unclassified0.2147.23e-213.1e-20
speciesAlistipes_sp_AP110.2131.22e-205.19e-20
speciesClostridium_ramosum-0.2131.34e-205.65e-20
speciesPrevotella_buccae-0.215.28e-202.21e-19
speciesClostridium_sp_L2_500.2071.32e-195.47e-19
speciesEubacterium_biforme0.2061.89e-197.76e-19
genusMitsuokella0.2062.25e-199.16e-19
classDeltaproteobacteria0.2044.4e-191.75e-18
orderDesulfovibrionales0.2044.4e-191.75e-18
familyDesulfovibrionaceae0.2044.4e-191.75e-18
speciesRuminococcus_torques0.2021.18e-184.64e-18
genusOlsenella0.2011.5e-185.85e-18
speciesMitsuokella_unclassified0.2011.77e-186.85e-18
genusButyrivibrio0.2011.89e-187.25e-18
familyLachnospiraceae0.1977.41e-182.82e-17
genusRuminococcaceae_noname0.1961.23e-174.61e-17
speciesRuminococcaceae_bacterium_D160.1961.23e-174.61e-17
speciesAnaerotruncus_colihominis0.1961.25e-174.65e-17
speciesRuminococcus_lactaris0.1942.4e-178.85e-17
speciesBifidobacterium_longum0.1942.43e-178.89e-17
speciesAlistipes_onderdonkii0.1942.47e-178.97e-17
speciesVeillonella_atypica-0.1942.83e-171.02e-16
genusOdoribacter0.1934.46e-171.59e-16
genusCoprobacillus-0.1891.43e-165.07e-16
speciesBacteroides_fragilis-0.1891.48e-165.21e-16
genusActinobacillus-0.1864.37e-161.52e-15
speciesActinobacillus_unclassified-0.1864.37e-161.52e-15
speciesOdoribacter_splanchnicus0.183.83e-151.32e-14
speciesAnaerostipes_unclassified-0.1735.32e-141.82e-13
speciesHoldemania_unclassified0.1727.68e-142.61e-13
genusAggregatibacter-0.1692.18e-137.35e-13
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1682.26e-137.57e-13
speciesAnaerostipes_hadrus0.1673.57e-131.19e-12
genusFaecalibacterium0.1673.83e-131.26e-12
speciesFaecalibacterium_prausnitzii0.1673.83e-131.26e-12
genusCoprobacter0.1664.97e-131.58e-12
speciesCoprobacter_fastidiosus0.1664.97e-131.58e-12
classErysipelotrichia0.1665e-131.58e-12
orderErysipelotrichales0.1665e-131.58e-12
familyErysipelotrichaceae0.1665e-131.58e-12
speciesEubacterium_eligens0.1665.39e-131.7e-12
speciesStreptococcus_thermophilus0.1656.07e-131.9e-12
speciesDesulfovibrio_piger0.1641.06e-123.29e-12
speciesDesulfovibrio_desulfuricans0.1631.41e-124.35e-12
speciesLachnospiraceae_bacterium_6_1_63FAA-0.1612.66e-128.15e-12
speciesParabacteroides_unclassified-0.163.91e-121.19e-11
speciesSubdoligranulum_sp_4_3_54A2FAA0.1595.03e-121.52e-11
speciesFusobacterium_nucleatum-0.1533.37e-111.01e-10
speciesBacteroides_thetaiotaomicron-0.1523.54e-111.06e-10
genusBilophila0.1515.7e-111.69e-10
speciesHaemophilus_paraphrohaemolyticus-0.157.53e-112.22e-10
speciesAggregatibacter_segnis-0.157.63e-112.24e-10
speciesBilophila_wadsworthia0.157.96e-112.32e-10
speciesBilophila_unclassified0.1491.03e-102.98e-10
genusErysipelotrichaceae_noname0.1443.51e-101.01e-09
speciesLachnospiraceae_bacterium_1_1_57FAA0.1435.39e-101.54e-09
phylumProteobacteria-0.1418.64e-102.46e-09
speciesErysipelotrichaceae_bacterium_21_30.1419.27e-102.62e-09
speciesBacteroides_ovatus-0.141.19e-093.34e-09
familyAcidaminococcaceae0.141.25e-093.49e-09
speciesButyrivibrio_unclassified0.141.31e-093.64e-09
speciesLactobacillus_salivarius-0.141.32e-093.64e-09
speciesKlebsiella_pneumoniae-0.141.35e-093.7e-09
speciesCoprococcus_eutactus0.1363.14e-098.57e-09
classGammaproteobacteria-0.1354.58e-091.24e-08
speciesHaemophilus_sputorum-0.1345.96e-091.61e-08
genusKlebsiella-0.1311.23e-083.3e-08
genusLachnospiraceae_noname0.1311.28e-083.41e-08
speciesPropionibacterium_freudenreichii0.1292.12e-085.62e-08
speciesClostridium_bolteae-0.1273.28e-088.65e-08
speciesStreptococcus_mitis_oralis_pneumoniae-0.1255.38e-081.41e-07
speciesLachnospiraceae_bacterium_2_1_46FAA-0.1256.57e-081.71e-07
speciesPorphyromonas_asaccharolytica0.1231.06e-072.75e-07
speciesMitsuokella_multacida0.1221.26e-073.25e-07
speciesClostridium_perfringens-0.1221.35e-073.46e-07
speciesDorea_unclassified-0.1192.71e-076.91e-07
speciesBacteroides_vulgatus-0.1182.82e-077.16e-07
genusCatenibacterium0.1173.59e-079.01e-07
speciesCatenibacterium_mitsuokai0.1173.59e-079.01e-07
speciesParabacteroides_merdae0.1164.79e-071.2e-06
speciesParaprevotella_unclassified0.1164.82e-071.2e-06
speciesParaprevotella_clara0.1155.88e-071.45e-06
speciesBlautia_hydrogenotrophica0.1155.96e-071.46e-06
genusParaprevotella0.1155.97e-071.46e-06
speciesEubacterium_cylindroides0.1138.7e-072.12e-06
speciesLactobacillus_ruminis0.1121.1e-062.66e-06
genusMegasphaera-0.111.9e-064.58e-06
speciesParaprevotella_xylaniphila0.1092.26e-065.41e-06
genusDialister0.1092.34e-065.58e-06
speciesButyrivibrio_crossotus0.1092.36e-065.6e-06
speciesBifidobacterium_catenulatum0.1092.43e-065.73e-06
genusPorphyromonas0.1082.58e-066.06e-06
genusPhascolarctobacterium0.1073.39e-067.88e-06
speciesPhascolarctobacterium_succinatutens0.1073.39e-067.88e-06
familySiphoviridae0.1055.14e-061.19e-05
speciesBacteroides_xylanisolvens-0.1055.53e-061.27e-05
speciesBacteroides_eggerthii0.1055.57e-061.28e-05
speciesClostridium_symbiosum-0.1046.1e-061.39e-05
genusPantoea-0.1029.98e-062.25e-05
speciesPantoea_unclassified-0.1029.98e-062.25e-05
speciesDialister_succinatiphilus0.1021.07e-052.4e-05
genusCampylobacter-0.1011.12e-052.51e-05
speciesRuminococcus_champanellensis0.0991.73e-053.85e-05
speciesStreptococcus_pasteurianus-0.0991.86e-054.12e-05
familyCampylobacteraceae-0.0982.02e-054.46e-05
classEpsilonproteobacteria-0.0972.44e-055.33e-05
orderCampylobacterales-0.0972.44e-055.33e-05
genusSiphoviridae_noname0.0972.65e-055.76e-05
speciesLactobacillus_mucosae-0.0972.66e-055.76e-05
speciesEggerthella_lenta0.0962.95e-056.36e-05
genusAnaerostipes0.0954.07e-058.73e-05
speciesBifidobacterium_bifidum0.0944.44e-059.48e-05
speciesClostridiales_bacterium_1_7_47FAA-0.0944.73e-050.000101
speciesLachnospiraceae_bacterium_5_1_63FAA0.0945.04e-050.000107
speciesStreptococcus_infantarius-0.0926.37e-050.000134
speciesLactococcus_phage_P6800.0926.43e-050.000135
phylumViruses_noname0.0927.17e-050.000149
classViruses_noname0.0927.17e-050.000149
speciesErysipelotrichaceae_bacterium_6_1_450.0918.05e-050.000167
speciesPeptostreptococcus_anaerobius0.0918.86e-050.000183
genusLeuconostoc0.098.98e-050.000184
genusLactococcus0.099.3e-050.00019
genusMethanosphaera0.090.0001010.000205
speciesMethanosphaera_stadtmanae0.090.0001010.000205
speciesBacteroides_stercoris-0.0890.0001110.000224
speciesAcidaminococcus_fermentans0.0870.0001530.000307
genusFlavonifractor-0.0870.0001580.000315
speciesFlavonifractor_plautii-0.0870.0001580.000315
speciesClostridium_clostridioforme-0.0870.0001660.000329
genusPropionibacterium0.0860.0001850.000365
speciesParabacteroides_goldsteinii0.0840.0002670.000525
genusButyricicoccus-0.0830.0003510.000685
speciesButyricicoccus_pullicaecorum-0.0830.0003510.000685
speciesBifidobacterium_animalis0.0820.0003930.000763
speciesLactobacillus_casei_paracasei0.0820.0003950.000764
speciesC2likevirus_unclassified0.0810.0004820.000929
speciesParabacteroides_johnsonii0.080.0005280.00101
speciesStreptococcus_lutetiensis-0.0790.000590.00112
speciesLactobacillus_plantarum0.0790.000590.00112
genusC2likevirus0.0790.0006350.0012
genusParvimonas0.0780.0006970.00132
speciesParvimonas_unclassified0.0780.0007080.00133
genusAcidaminococcus0.0770.0008740.00164
genusParabacteroides-0.0770.000880.00164
speciesLactococcus_phage_jm20.0760.000960.00178
speciesPrevotella_stercorea-0.0740.001310.00242
speciesLactococcus_lactis0.0740.001330.00245
genusTuricibacter0.0740.001420.00261
speciesClostridium_asparagiforme0.0740.001460.00267
speciesEnterobacter_aerogenes-0.0730.001510.00275
speciesErysipelotrichaceae_bacterium_2_2_44A0.0730.001550.00281
orderEnterobacteriales-0.0720.001760.00317
familyEnterobacteriaceae-0.0720.001760.00317
speciesTuricibacter_unclassified0.0720.001950.0035
speciesEubacterium_limosum0.0720.001970.00352
familyMyoviridae-0.0710.002040.00363
speciesEubacterium_dolichum-0.070.002470.00438
genusButyricimonas0.070.002490.00439
speciesButyricimonas_synergistica0.070.002490.00439
speciesRuminococcus_sp_JC3040.070.00250.00439
speciesBacteroides_intestinalis0.070.002550.00446
speciesBacteroides_cellulosilyticus0.0690.002970.00517
genusBlautia0.0680.003050.00529
orderCaudovirales0.0680.003160.00546
speciesMegamonas_unclassified-0.0680.003430.00591
genusMorganella-0.0670.003570.00611
speciesMorganella_morganii-0.0670.003570.00611
genusMegamonas-0.0670.003650.00622
speciesBlautia_producta-0.0670.003890.0066
speciesLactobacillus_fermentum-0.0660.004060.00687
familyClostridiales_Family_XI_Incertae_Sedis0.0660.004390.0074
speciesBacteroides_pectinophilus0.0630.006170.0104
genusPyramidobacter0.0630.006430.0107
speciesPyramidobacter_piscolens0.0630.006430.0107
classBetaproteobacteria-0.0620.006870.0114
speciesOdoribacter_laneus0.0620.007040.0117
familyLeuconostocaceae0.0620.007480.0123
speciesOscillibacter_sp_KLE_1728-0.0620.007510.0124
speciesDialister_invisus0.0620.007590.0124
genusCoriobacteriaceae_noname0.0620.007750.0127
genusMyoviridae_noname-0.0610.008030.0131
speciesLactobacillus_oris-0.060.009080.0147
orderViruses_noname0.060.00930.015
speciesLachnospiraceae_bacterium_1_4_56FAA-0.060.009440.0152
speciesCollinsella_intestinalis-0.0570.01330.0214
genusEscherichia-0.0570.01340.0214
phylumSynergistetes0.0570.01370.0216
classSynergistia0.0570.01370.0216
orderSynergistales0.0570.01370.0216
familySynergistaceae0.0570.01370.0216
speciesCoriobacteriaceae_bacterium_phI0.0570.01370.0216
genusProteus-0.0570.01430.0224
speciesEscherichia_coli-0.0550.01670.0261
speciesCoprobacillus_sp_29_10.0550.01690.0263
familyPrevotellaceae0.0550.01720.0267
speciesRoseburia_intestinalis0.0550.01790.0277
genusClostridiales_noname-0.0540.01860.0287
speciesTuricibacter_sanguinis0.0540.01880.0289
speciesPorphyromonas_uenonis0.0540.01890.029
speciesProteus_mirabilis-0.0540.020.0306
speciesBacteroides_oleiciplenus-0.0540.02030.0309
speciesLactococcus_phage_phi70.0540.02050.0311
orderBurkholderiales-0.0530.0210.0318
speciesLactobacillus_vaginalis-0.0510.02790.0421
familySutterellaceae-0.050.03030.0455
speciesLachnospiraceae_bacterium_8_1_57FAA-0.050.03080.0462
speciesBacteroides_clarus0.0490.03250.0485
speciesSutterella_wadsworthensis0.0490.03260.0485
speciesBacteroides_barnesiae0.0480.03930.0583
speciesClostridium_citroniae0.0470.0420.0621
speciesStreptococcus_phage_Sfi210.0470.04240.0625
speciesMegamonas_rupellensis-0.0470.04250.0625
speciesClostridium_bartlettii0.0460.04690.0687
speciesLactobacillus_delbrueckii0.0450.05180.0757
speciesSutterella_parvirubra-0.0450.05310.0774
genusEnterobacter-0.0440.05590.0812
familyPropionibacteriaceae0.0440.05890.0853
speciesBifidobacterium_breve-0.0440.05950.0858
speciesEnterobacter_cloacae-0.0440.05960.0858
speciesClostridium_sp_ATCC_BAA_442-0.0430.06160.0884
genusAcidaminococcaceae_unclassified0.0430.06280.0898
speciesCitrobacter_unclassified-0.0420.07050.1
speciesLactococcus_garvieae0.0420.07060.1
speciesLactobacillus_crispatus-0.0420.07170.102
genusRoseburia0.0420.07240.102
speciesClostridium_hathewayi-0.0410.07480.105
familyVeillonellaceae-0.0410.07720.108
speciesParabacteroides_distasonis-0.0410.07770.109
speciesStreptococcus_gordonii-0.040.080.112
genusLactobacillus0.040.08110.113
speciesKlebsiella_sp_MS_92_3-0.040.08150.113
familyLactobacillaceae0.040.08510.118
orderActinomycetales0.040.08740.121
speciesPeptostreptococcus_stomatis-0.0390.09290.128
genusSutterella0.0380.09620.132
speciesAcidaminococcus_unclassified0.0380.1010.138
speciesRoseburia_inulinivorans0.0380.1010.138
speciesBacteroides_nordii0.0380.1040.141
familyActinomycetaceae0.0370.1070.145
speciesLactobacillus_reuteri0.0370.1090.147
speciesLactococcus_phage_936_sensu_lato0.0370.1110.15
speciesStreptococcus_anginosus-0.0360.1180.159
speciesLachnospiraceae_bacterium_5_1_57FAA0.0360.1190.16
speciesSlackia_piriformis0.0360.1220.163
speciesRothia_mucilaginosa-0.0350.1260.168
genusCitrobacter-0.0350.1290.172
speciesCollinsella_unclassified-0.0350.1340.178
speciesStreptococcus_sanguinis-0.0350.1350.178
speciesStreptococcus_vestibularis-0.0340.1430.189
speciesBacteroides_coprophilus0.0340.1460.192
genusActinomyces0.0330.1510.198
speciesBacteroides_caccae0.0330.1540.201
familyClostridiaceae-0.0330.1550.202
speciesPeptostreptococcaceae_noname_unclassified0.0320.1610.209
genusClostridium-0.0320.1640.212
speciesLactobacillus_gasseri-0.0320.1640.212
speciesParabacteroides_sp_D130.0310.1790.231
speciesLactobacillus_sanfranciscensis0.0310.1840.237
orderLactobacillales0.0310.1860.239
genusSolobacterium0.030.1950.248
speciesSolobacterium_moorei0.030.1950.248
speciesEscherichia_unclassified0.030.1950.248
classBacilli0.0290.2040.259
speciesLactobacillus_rhamnosus0.0290.2080.263
speciesBacteroides_plebeius-0.0290.2080.263
genusPeptoniphilus0.0290.2140.269
orderAeromonadales-0.0280.2210.277
speciesOdoribacter_unclassified0.0280.2240.28
speciesBifidobacterium_dentium-0.0280.2320.29
speciesCoprobacillus_sp_D60.0270.2410.3
speciesBacteroides_salanitronis0.0270.2440.302
speciesOscillibacter_sp_KLE_17450.0270.2440.302
familyMicrococcaceae-0.0270.2450.302
speciesBifidobacterium_angulatum0.0270.2450.302
speciesBacteroides_uniformis0.0270.250.307
genusRothia-0.0260.2540.311
familyBacillales_noname-0.0260.2570.313
genusGemella-0.0260.2570.313
familyPeptostreptococcaceae0.0260.2610.318
speciesMegamonas_hypermegale-0.0250.2740.332
familyPorphyromonadaceae0.0250.2780.336
speciesMegasphaera_elsdenii0.0250.2790.337
speciesBacteroides_faecis0.0250.280.337
familyStaphylococcaceae0.0240.2940.353
speciesEggerthella_sp_1_3_56FAA0.0240.2990.358
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0240.3020.361
genusSlackia0.0230.3110.371
genusStaphylococcus0.0230.3140.373
speciesBacteroides_coprocola-0.0230.3250.384
speciesPrevotella_copri0.0230.3250.384
speciesStreptococcus_mutans-0.0230.3260.385
speciesGemella_morbillorum0.0220.3320.391
speciesClostridium_spiroforme0.0220.3390.398
speciesCitrobacter_freundii-0.0220.3480.408
genusPeptostreptococcus-0.0210.3670.429
orderBacillales-0.0210.3690.43
speciesWeissella_cibaria-0.0210.3720.432
speciesBacteroides_sp_1_1_6-0.020.3850.445
classNegativicutes0.020.3860.445
orderSelenomonadales0.020.3860.445
familyPodoviridae-0.020.3960.455
speciesKlebsiella_unclassified-0.020.3960.455
speciesBacteroides_finegoldii0.0190.4110.471
genusPeptostreptococcaceae_noname0.0190.4130.472
speciesPrevotella_bivia0.0190.4220.481
speciesBacteroides_salyersiae0.0180.4340.494
genusParasutterella0.0170.4520.512
speciesParasutterella_excrementihominis0.0170.4520.512
speciesAlistipes_sp_HGB50.0170.4550.514
speciesLactobacillus_acidophilus0.0170.460.518
speciesWeissella_confusa-0.0160.4830.543
familyClostridiales_noname-0.0160.4840.543
genusWeissella-0.0150.5120.571
familyViruses_noname-0.0150.5130.571
genusViruses_noname-0.0150.5130.571
speciesEnterococcus_faecalis-0.0150.5280.586
speciesMegasphaera_unclassified0.0140.5340.592
speciesBifidobacterium_pseudocatenulatum-0.0140.5420.599
speciesStreptococcus_australis-0.0140.5470.603
speciesBacteroides_fluxus0.0140.5570.613
familySuccinivibrionaceae0.0130.560.615
speciesRoseburia_unclassified0.0130.5790.634
speciesErysipelotrichaceae_bacterium_3_1_53-0.0130.580.634
speciesKlebsiella_oxytoca-0.0130.5850.638
speciesEnterobacteria_phage_HK544-0.0120.5910.642
speciesBacteroides_dorei0.0120.5920.642
speciesLactococcus_phage_bIL67-0.0120.5960.643
speciesKlebsiella_phage_KP360.0120.5970.643
speciesEggerthella_unclassified-0.0120.5970.643
speciesMegamonas_funiformis-0.0120.6090.655
speciesParabacteroides_sp_20_30.0110.6420.689
speciesStreptococcus_salivarius0.0110.6450.69
speciesAcidaminococcus_intestini0.010.6530.697
genusSutterellaceae_unclassified0.010.6640.706
genusClostridiaceae_noname-0.010.6670.706
speciesLactobacillus_amylovorus-0.010.6670.706
speciesClostridiaceae_bacterium_JC118-0.010.6670.706
genusBurkholderiales_noname0.0090.7030.741
speciesBurkholderiales_bacterium_1_1_470.0090.7030.741
familyBurkholderiales_noname0.0080.7250.762
genusSuccinatimonas0.0080.7330.767
speciesSuccinatimonas_hippei0.0080.7330.767
speciesAlistipes_unclassified-0.0080.7440.777
familyEnterococcaceae-0.0070.7560.788
speciesBacteroides_sp_2_1_220.0070.7660.796
genusEnterococcus-0.0070.7690.798
genusLambdalikevirus-0.0060.7820.809
speciesClostridium_sp_KLE_17550.0060.7830.809
speciesHoldemania_sp_AP2-0.0060.8050.83
speciesBacteroides_sp_3_1_19-0.0050.8140.837
familyStreptococcaceae0.0050.830.852
speciesCollinsella_tanakaei0.0050.8370.857
speciesBacteroides_massiliensis-0.0050.8450.863
speciesBacteroides_sp_4_3_47FAA0.0040.8510.868
speciesEubacterium_sp_3_1_31-0.0040.8770.892
genusStreptococcus0.0030.8850.897
genusEggerthella-0.0030.8860.897
speciesEnterococcus_faecium-0.0030.8930.903
genusTunalikevirus0.0030.9050.911
orderPseudomonadales-0.0030.9060.911
speciesStreptococcus_parasanguinis-0.0030.9070.911
speciesLeuconostoc_lactis0.0010.9630.965
genusPrevotella0.00.9840.984
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.0008958125752490.00382609244336.2368488669e-0915525.21348
Crohns diseaseSpain17660.002001003639930.004584902529920.00249399961634550818.3142
Type II diabetesChina1831850.004631042367980.003678370678750.0640572850509774925.6089
Type II diabetesDenmark752770.008138791860530.00576673176550.1252722331071058934.7101
ObesityDenmark1691230.005476614580890.006129707986330.5103416177711960564.4668
Colorectal cancerAustria64350.007476936116520.008569844996430.6792118027622246576.0083
Rheumatoid arthritisChina127980.007934452896250.007350722938560.7371270126932339078.0005
Ulcerative colitisSpain78660.005066892939520.004584902529920.7803210908932529583.4433
Type II diabetesSweden53920.008513645758930.007411735389180.8440316345632538385.9567
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382