MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-16 08:42:20 PST
Job id & description: 2098, ABC transporter
Query type: protein
Count queries & homologs: 1, 2
Min % identity & max e-value: 90%, 1e-5
Min % query & target coverage: 90%, 90%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
query_id444911CompleteK00219COG0446;COG1902unknownunknown100.0100.099.85
query_id444806CompleteK00219COG0446;COG1902unknownunknown100.0100.096.99
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusDorea0.553.03e-1481.43e-145
speciesEubacterium_hallii0.5254.28e-1331.01e-130
speciesDorea_formicigenerans0.5251.06e-1321.67e-130
orderCoriobacteriales0.5111.2e-1241.13e-122
familyCoriobacteriaceae0.5111.2e-1241.13e-122
speciesCoprococcus_comes0.5071.2e-1229.44e-121
genusCoprococcus0.56.34e-1194.27e-117
speciesDorea_longicatena0.4992.35e-1181.39e-116
speciesRuminococcus_obeum0.4941.78e-1159.34e-114
speciesRuminococcus_sp_5_1_39BFAA0.4875.09e-1122.4e-110
speciesCoprococcus_catus0.4822.86e-1091.23e-107
speciesCollinsella_aerofaciens0.4681.6e-1026.29e-101
genusCollinsella0.4581.7e-976.17e-96
speciesEubacterium_ramulus0.4569.15e-973.08e-95
genusAdlercreutzia0.4283.2e-849.44e-83
speciesAdlercreutzia_equolifaciens0.4283.2e-849.44e-83
classClostridia0.4262.28e-836e-82
orderClostridiales0.4262.29e-836e-82
genusRuminococcus0.4071.04e-752.58e-74
phylumActinobacteria0.4042.16e-744.85e-73
classActinobacteria0.4042.16e-744.85e-73
speciesAnaerostipes_hadrus0.4021.65e-733.54e-72
familyRuminococcaceae0.3971.49e-713.06e-70
phylumFirmicutes0.3878.45e-681.66e-66
classBacteroidia-0.3861.51e-672.67e-66
orderBacteroidales-0.3861.51e-672.67e-66
phylumBacteroidetes-0.3861.53e-672.67e-66
speciesSubdoligranulum_unclassified0.3832.28e-663.84e-65
genusSubdoligranulum0.382.77e-654.51e-64
familyLachnospiraceae0.3513.28e-555.16e-54
speciesClostridium_leptum0.3482.68e-544.08e-53
familyEubacteriaceae0.3475.55e-547.8e-53
speciesRuminococcus_torques0.3475.61e-547.8e-53
genusEubacterium0.3475.62e-547.8e-53
speciesBifidobacterium_longum0.341.06e-511.43e-50
genusGordonibacter0.3378.23e-511.05e-49
speciesGordonibacter_pamelaeae0.3378.23e-511.05e-49
speciesEubacterium_rectale0.331.1e-481.37e-47
speciesStreptococcus_thermophilus0.3283.37e-484.08e-47
familyBacteroidaceae-0.3244.81e-475.54e-46
genusBacteroides-0.3244.81e-475.54e-46
speciesLachnospiraceae_bacterium_5_1_63FAA0.3231.53e-461.72e-45
genusAnaerostipes0.3184.46e-454.9e-44
orderBifidobacteriales0.3175.44e-455.71e-44
familyBifidobacteriaceae0.3175.44e-455.71e-44
genusBifidobacterium0.3177.92e-458.13e-44
speciesBifidobacterium_adolescentis0.3012.39e-402.4e-39
phylumFusobacteria-0.2892.55e-372.41e-36
classFusobacteriia-0.2892.55e-372.41e-36
orderFusobacteriales-0.2892.55e-372.41e-36
genusBlautia0.2885.6e-375.18e-36
speciesEubacterium_ventriosum0.2861.61e-361.46e-35
familyFusobacteriaceae-0.2843.91e-363.48e-35
genusFusobacterium-0.285.26e-354.6e-34
speciesBlautia_hydrogenotrophica0.2772.94e-342.52e-33
speciesEubacterium_siraeum0.2732.4e-332.02e-32
speciesLachnospiraceae_bacterium_3_1_46FAA0.262.29e-301.9e-29
phylumVerrucomicrobia0.2513.65e-282.73e-27
classVerrucomicrobiae0.2513.65e-282.73e-27
orderVerrucomicrobiales0.2513.65e-282.73e-27
familyVerrucomicrobiaceae0.2513.65e-282.73e-27
genusAkkermansia0.2513.65e-282.73e-27
speciesAkkermansia_muciniphila0.2513.65e-282.73e-27
speciesBacteroides_thetaiotaomicron-0.2463.07e-272.26e-26
genusPseudoflavonifractor0.2455.99e-274.28e-26
speciesPseudoflavonifractor_capillosus0.2455.99e-274.28e-26
speciesHaemophilus_parainfluenzae-0.2431.34e-269.44e-26
genusHaemophilus-0.2413.47e-262.41e-25
speciesKlebsiella_pneumoniae-0.2391.29e-258.82e-25
orderPasteurellales-0.2391.34e-258.91e-25
familyPasteurellaceae-0.2391.34e-258.91e-25
genusKlebsiella-0.2381.67e-251.09e-24
genusBarnesiella0.2365.31e-253.39e-24
speciesBarnesiella_intestinihominis0.2365.31e-253.39e-24
genusHoldemania0.235.78e-243.64e-23
speciesBacteroides_fragilis-0.238.16e-245.07e-23
speciesClostridium_nexile-0.2291.04e-236.38e-23
classGammaproteobacteria-0.2282.08e-231.26e-22
speciesLachnospiraceae_bacterium_7_1_58FAA0.2272.83e-231.69e-22
speciesRuminococcus_bromii0.225.34e-223.15e-21
speciesAnaerotruncus_unclassified0.2181.28e-217.46e-21
speciesHoldemania_filiformis0.2164.21e-212.42e-20
speciesFusobacterium_mortiferum-0.2149.13e-215.19e-20
phylumProteobacteria-0.2131.31e-207.36e-20
speciesFusobacterium_ulcerans-0.2121.99e-201.11e-19
phylumEuryarchaeota0.2088.39e-204.6e-19
speciesLactococcus_lactis0.2088.6e-204.67e-19
speciesVeillonella_unclassified-0.2081.14e-196.11e-19
genusLachnospiraceae_noname0.2071.33e-197.05e-19
familyActinomycetaceae0.2071.37e-197.18e-19
speciesMethanobrevibacter_smithii0.2071.72e-198.92e-19
speciesErysipelotrichaceae_bacterium_21_30.2061.97e-191.01e-18
classMethanobacteria0.2053.68e-191.83e-18
orderMethanobacteriales0.2053.68e-191.83e-18
familyMethanobacteriaceae0.2053.68e-191.83e-18
genusVeillonella-0.2053.76e-191.85e-18
genusLactococcus0.2053.86e-191.88e-18
genusMethanobrevibacter0.2045.12e-192.47e-18
genusActinomyces0.2045.35e-192.55e-18
genusButyrivibrio0.1994.43e-182.09e-17
genusMegasphaera-0.1978.45e-183.95e-17
speciesOlsenella_unclassified0.1961.24e-175.74e-17
speciesBifidobacterium_animalis0.1926.62e-173.03e-16
speciesBifidobacterium_catenulatum0.1917.03e-173.19e-16
speciesBacteroides_xylanisolvens-0.1917.64e-173.43e-16
speciesVeillonella_parvula-0.1919.64e-174.29e-16
orderEnterobacteriales-0.191.32e-165.77e-16
familyEnterobacteriaceae-0.191.32e-165.77e-16
familySiphoviridae0.1873.45e-161.49e-15
genusCoprobacter0.1864.87e-162.07e-15
speciesCoprobacter_fastidiosus0.1864.87e-162.07e-15
speciesFusobacterium_varium-0.1857.65e-163.22e-15
speciesMegasphaera_micronuciformis-0.1857.97e-163.33e-15
speciesPropionibacterium_freudenreichii0.1858.14e-163.37e-15
familyBacteroidales_noname0.1858.72e-163.52e-15
genusBacteroidales_noname0.1858.72e-163.52e-15
speciesBacteroidales_bacterium_ph80.1858.72e-163.52e-15
genusEscherichia-0.1849.98e-163.99e-15
classErysipelotrichia0.1841.11e-154.33e-15
orderErysipelotrichales0.1841.11e-154.33e-15
familyErysipelotrichaceae0.1841.11e-154.33e-15
speciesEscherichia_coli-0.1831.38e-155.34e-15
genusOlsenella0.1812.6e-159.9e-15
speciesPrevotella_buccae-0.1812.6e-159.9e-15
speciesRuminococcus_lactaris0.183.8e-151.43e-14
genusParabacteroides-0.184.01e-151.5e-14
phylumViruses_noname0.1795.91e-152.18e-14
classViruses_noname0.1795.91e-152.18e-14
speciesEggerthella_lenta0.1788.76e-153.21e-14
speciesRuminococcus_gnavus-0.1771.07e-143.88e-14
speciesButyrivibrio_unclassified0.1771.17e-144.22e-14
speciesBacteroides_ovatus-0.1771.3e-144.65e-14
speciesRoseburia_hominis0.1752.52e-148.94e-14
genusRuminococcaceae_noname0.1734.86e-141.7e-13
speciesRuminococcaceae_bacterium_D160.1734.86e-141.7e-13
genusErysipelotrichaceae_noname0.1682.74e-139.51e-13
speciesMegamonas_unclassified-0.1682.93e-131.01e-12
genusMegamonas-0.1673.22e-131.1e-12
speciesAnaerostipes_unclassified-0.1673.72e-131.26e-12
speciesPrevotella_stercorea-0.1673.92e-131.32e-12
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1664.66e-131.56e-12
genusAnaerotruncus0.1664.84e-131.61e-12
orderActinomycetales0.1657.35e-132.43e-12
speciesBacteroides_stercoris-0.1648.59e-132.82e-12
speciesVeillonella_dispar-0.1621.64e-125.34e-12
genusC2likevirus0.1612.5e-128.08e-12
speciesEubacterium_cylindroides0.1612.8e-128.99e-12
speciesLactobacillus_delbrueckii0.1612.92e-129.31e-12
speciesEubacterium_biforme0.163.41e-121.08e-11
speciesC2likevirus_unclassified0.1594.55e-121.43e-11
genusPropionibacterium0.1586.43e-122.01e-11
genusTuricibacter0.1586.55e-122.03e-11
speciesCoprococcus_sp_ART55_10.1577.52e-122.32e-11
speciesTuricibacter_unclassified0.1578.89e-122.72e-11
speciesLactobacillus_casei_paracasei0.1542.13e-116.49e-11
genusPrevotella-0.1542.47e-117.47e-11
speciesMitsuokella_unclassified0.1542.5e-117.52e-11
genusMitsuokella0.1532.68e-118.01e-11
speciesCampylobacter_concisus-0.1498.33e-112.47e-10
speciesLactobacillus_salivarius-0.1499.08e-112.68e-10
orderCaudovirales0.1462.17e-106.36e-10
speciesAlistipes_senegalensis0.1462.41e-107.02e-10
speciesClostridium_symbiosum-0.1453.02e-108.75e-10
speciesErysipelotrichaceae_bacterium_6_1_450.1453.17e-109.12e-10
genusEnterobacter-0.1443.6e-101.03e-09
speciesAlistipes_sp_AP110.1426.83e-101.94e-09
genusSiphoviridae_noname0.1419.71e-102.74e-09
orderViruses_noname0.1382.1e-095.9e-09
speciesBifidobacterium_bifidum0.1382.27e-096.34e-09
speciesTuricibacter_sanguinis0.1382.34e-096.5e-09
speciesPrevotella_copri-0.1372.83e-097.81e-09
speciesLactobacillus_mucosae-0.1372.87e-097.88e-09
familyPropionibacteriaceae0.1363.54e-099.66e-09
speciesErysipelotrichaceae_bacterium_2_2_44A0.1363.69e-091e-08
speciesVeillonella_atypica-0.1363.76e-091.01e-08
speciesHoldemania_unclassified0.1364.01e-091.08e-08
speciesClostridiales_bacterium_1_7_47FAA-0.1354.18e-091.11e-08
speciesMethanobrevibacter_unclassified0.1354.53e-091.2e-08
speciesEnterobacter_cloacae-0.1354.64e-091.22e-08
genusDialister0.1337.07e-091.85e-08
speciesLachnospiraceae_bacterium_2_1_46FAA-0.1321.1e-082.87e-08
speciesPeptostreptococcaceae_noname_unclassified0.1311.28e-083.32e-08
speciesRuminococcus_callidus0.131.52e-083.92e-08
genusLeuconostoc0.131.68e-084.31e-08
speciesBacteroides_vulgatus-0.131.87e-084.77e-08
genusSolobacterium0.1273.37e-088.51e-08
speciesSolobacterium_moorei0.1273.37e-088.51e-08
speciesFusobacterium_nucleatum-0.1273.59e-089.01e-08
speciesLactococcus_phage_P6800.1264.2e-081.05e-07
speciesClostridium_hathewayi-0.1221.09e-072.71e-07
speciesClostridium_perfringens-0.1211.38e-073.41e-07
speciesStreptococcus_parasanguinis0.1211.49e-073.66e-07
speciesDialister_invisus0.1192.2e-075.38e-07
speciesBacteroides_oleiciplenus-0.1192.29e-075.57e-07
speciesClostridium_bolteae-0.1192.4e-075.81e-07
speciesRuminococcus_sp_JC3040.1192.44e-075.88e-07
speciesMegasphaera_unclassified-0.1183.15e-077.55e-07
speciesBacteroides_nordii-0.1183.18e-077.58e-07
speciesMegamonas_rupellensis-0.1174.23e-071e-06
familyStreptococcaceae0.1164.44e-071.05e-06
genusClostridiales_noname-0.1164.73e-071.11e-06
familyVeillonellaceae-0.1165.11e-071.19e-06
genusFaecalibacterium0.1156.66e-071.54e-06
speciesFaecalibacterium_prausnitzii0.1156.66e-071.54e-06
speciesSubdoligranulum_sp_4_3_54A2FAA0.1156.68e-071.54e-06
speciesCoprobacillus_unclassified-0.1138.8e-072.02e-06
speciesMegamonas_hypermegale-0.1139.67e-072.2e-06
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.111.84e-064.18e-06
speciesLactobacillus_rhamnosus0.1092.08e-064.7e-06
genusStreptococcus0.1092.27e-065.1e-06
orderLactobacillales0.1082.97e-066.64e-06
genusPhascolarctobacterium0.1073.2e-067.09e-06
speciesPhascolarctobacterium_succinatutens0.1073.2e-067.09e-06
speciesClostridium_ramosum-0.1064.03e-068.89e-06
speciesEnterobacter_aerogenes-0.1064.79e-061.05e-05
genusCampylobacter-0.1055.76e-061.25e-05
genusActinobacillus-0.1055.78e-061.25e-05
speciesActinobacillus_unclassified-0.1055.78e-061.25e-05
classBacilli0.1046.77e-061.46e-05
genusDesulfovibrio0.1047.03e-061.51e-05
speciesCoprococcus_eutactus0.1037.49e-061.6e-05
genusPyramidobacter-0.1037.74e-061.64e-05
speciesPyramidobacter_piscolens-0.1037.74e-061.64e-05
speciesAlistipes_onderdonkii0.1038.39e-061.77e-05
speciesBacteroides_intestinalis-0.1038.46e-061.77e-05
speciesParaprevotella_clara0.1029.09e-061.9e-05
classBetaproteobacteria-0.1021.01e-052.1e-05
speciesKlebsiella_unclassified-0.1021.05e-052.17e-05
familyCampylobacteraceae-0.1011.25e-052.58e-05
speciesParaprevotella_unclassified0.11.38e-052.83e-05
speciesClostridium_sp_L2_500.11.42e-052.9e-05
classEpsilonproteobacteria-0.11.46e-052.96e-05
orderCampylobacterales-0.11.46e-052.96e-05
genusPantoea-0.11.51e-053.03e-05
speciesPantoea_unclassified-0.11.51e-053.03e-05
speciesOdoribacter_laneus0.11.55e-053.1e-05
genusParaprevotella0.0991.63e-053.25e-05
genusEggerthella0.0991.81e-053.59e-05
speciesDorea_unclassified-0.0982.1e-054.15e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.0982.17e-054.27e-05
speciesBacteroides_plebeius-0.0982.37e-054.64e-05
speciesDesulfovibrio_piger0.0972.45e-054.78e-05
speciesOdoribacter_unclassified0.0963.01e-055.85e-05
genusAggregatibacter-0.0963.18e-056.13e-05
genusCoprobacillus-0.0963.18e-056.13e-05
speciesAlistipes_indistinctus0.0963.23e-056.2e-05
familyLactobacillaceae0.0963.43e-056.55e-05
phylumSynergistetes-0.0954e-057.52e-05
classSynergistia-0.0954e-057.52e-05
orderSynergistales-0.0954e-057.52e-05
familySynergistaceae-0.0954e-057.52e-05
speciesButyrivibrio_crossotus0.0944.65e-058.71e-05
familyPeptostreptococcaceae0.0945.03e-059.38e-05
familyPorphyromonadaceae-0.0945.06e-059.38e-05
speciesCitrobacter_unclassified-0.0945.07e-059.38e-05
orderBurkholderiales-0.0935.41e-059.97e-05
speciesParaprevotella_xylaniphila0.0935.43e-059.97e-05
speciesLachnospiraceae_bacterium_1_1_57FAA0.0935.6e-050.000102
speciesCitrobacter_freundii-0.0936.02e-050.00011
speciesLactobacillus_plantarum0.0936.07e-050.00011
speciesEggerthella_sp_1_3_56FAA0.0926.99e-050.000126
speciesSutterella_wadsworthensis0.0927.33e-050.000132
genusLactobacillus0.0918.26e-050.000148
speciesRoseburia_intestinalis0.0918.39e-050.00015
speciesMegamonas_funiformis-0.099.25e-050.000165
speciesPeptostreptococcus_anaerobius0.090.0001010.000179
orderPseudomonadales0.090.0001030.000182
speciesOscillibacter_unclassified0.0890.0001110.000195
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0880.0001330.000233
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0880.0001390.000243
speciesStreptococcus_infantarius-0.0870.0001730.000301
speciesClostridium_clostridioforme-0.0860.0001810.000314
genusCitrobacter-0.0850.0002310.000399
speciesAggregatibacter_segnis-0.0850.0002370.000408
genusPeptostreptococcaceae_noname0.0850.0002380.000408
speciesHaemophilus_paraphrohaemolyticus-0.0840.0002930.000501
familyAcidaminococcaceae0.0840.0002970.000502
genusCatenibacterium0.0840.0002970.000502
speciesCatenibacterium_mitsuokai0.0840.0002970.000502
speciesParabacteroides_unclassified-0.0830.0003190.000538
speciesAlistipes_finegoldii0.0830.0003420.000574
speciesEnterobacteria_phage_HK544-0.0810.0004650.000778
genusFlavonifractor-0.080.0005130.000853
speciesFlavonifractor_plautii-0.080.0005130.000853
familyBacillales_noname0.080.0005320.000878
genusGemella0.080.0005320.000878
familyLeuconostocaceae0.080.0005780.000951
genusSutterella0.0790.0006450.00106
speciesAcidaminococcus_unclassified0.0780.0006830.00112
speciesAcidaminococcus_fermentans-0.0780.0006890.00112
familyClostridiales_Family_XI_Incertae_Sedis0.0780.0007540.00122
familyOscillospiraceae0.0770.0008490.00137
genusOscillibacter0.0770.0008490.00137
genusClostridiaceae_noname0.0770.0008580.00137
speciesClostridiaceae_bacterium_JC1180.0770.0008580.00137
speciesEggerthella_unclassified0.0760.0009650.00154
speciesStreptococcus_sanguinis0.0750.001110.00176
speciesRoseburia_inulinivorans0.0750.001120.00177
speciesClostridium_spiroforme0.0750.001190.00188
speciesEnterococcus_faecium0.0740.001290.00203
speciesLactobacillus_acidophilus0.0740.001330.00209
familySutterellaceae-0.0730.00160.0025
familyMyoviridae-0.0710.002180.0034
orderBacillales0.070.002290.00356
speciesAcidaminococcus_intestini-0.070.002520.0039
speciesPorphyromonas_asaccharolytica0.070.002610.00403
speciesParabacteroides_distasonis-0.0680.003270.00503
speciesAnaerotruncus_colihominis0.0670.003820.00585
genusParvimonas0.0660.004330.00661
speciesParvimonas_unclassified0.0660.004390.00668
genusMethanosphaera0.0650.004730.00716
speciesMethanosphaera_stadtmanae0.0650.004730.00716
genusBurkholderiales_noname-0.0650.004930.00741
speciesBurkholderiales_bacterium_1_1_47-0.0650.004930.00741
speciesDesulfovibrio_desulfuricans0.0650.005020.00752
classNegativicutes-0.0650.005070.00755
orderSelenomonadales-0.0650.005070.00755
familyBurkholderiales_noname-0.0650.005160.00766
genusPorphyromonas0.0650.00520.00769
genusCoriobacteriaceae_noname0.0640.005680.00838
speciesStreptococcus_vestibularis0.0630.00680.01
speciesLactococcus_phage_jm20.0620.00750.011
genusPeptostreptococcus0.0620.007650.0112
speciesKlebsiella_sp_MS_92_3-0.0610.008150.0119
speciesCoriobacteriaceae_bacterium_phI0.060.009290.0135
genusParasutterella-0.060.009650.0139
speciesParasutterella_excrementihominis-0.060.009650.0139
speciesStreptococcus_pasteurianus-0.060.009970.0143
speciesAlistipes_shahii0.0590.01010.0145
speciesAlistipes_sp_HGB50.0590.01020.0146
speciesAlistipes_putredinis0.0590.01090.0155
speciesLactobacillus_crispatus-0.0580.01170.0166
speciesSlackia_piriformis0.0570.0130.0184
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0570.01360.0192
genusMyoviridae_noname-0.0560.01490.0209
speciesBacteroides_finegoldii-0.0560.01490.0209
familyPrevotellaceae-0.0560.0160.0224
genusSlackia0.0550.01720.024
speciesHaemophilus_sputorum-0.0540.01880.0262
speciesClostridium_bartlettii0.0540.01930.0268
familyEnterococcaceae0.0540.01940.0269
speciesRuminococcus_champanellensis0.0540.01960.0271
speciesParabacteroides_sp_20_30.0540.01970.0271
genusEnterococcus0.0540.01980.0272
speciesEscherichia_unclassified-0.0530.02140.0293
familyClostridiaceae-0.0530.02190.0299
speciesEubacterium_sp_3_1_310.0530.02210.0301
familyClostridiales_noname-0.0530.02260.0307
speciesStreptococcus_salivarius0.0530.0230.0311
genusRoseburia0.0520.02530.0341
orderAeromonadales-0.0510.0260.035
genusMorganella-0.0510.02720.0364
speciesMorganella_morganii-0.0510.02720.0364
speciesDialister_succinatiphilus0.0510.02820.0376
genusClostridium-0.050.02930.039
speciesErysipelotrichaceae_bacterium_3_1_530.050.02950.0391
speciesBifidobacterium_angulatum0.050.02960.0391
speciesSutterella_parvirubra-0.050.02990.0394
genusProteus-0.050.03160.0415
speciesOscillibacter_sp_KLE_1728-0.0490.03560.0467
genusAcidaminococcaceae_unclassified0.0480.03610.0472
speciesCollinsella_tanakaei-0.0480.03890.0507
speciesStreptococcus_mutans0.0480.03910.0508
speciesStreptococcus_phage_Sfi210.0470.04260.0552
speciesOscillibacter_sp_KLE_17450.0470.04360.0564
speciesBilophila_wadsworthia0.0460.04780.0616
speciesClostridium_sp_ATCC_BAA_442-0.0440.05660.0728
genusRothia0.0440.05710.0732
speciesRoseburia_unclassified0.0440.05780.0739
speciesClostridium_citroniae-0.0440.05830.0744
familyMicrococcaceae0.0440.05940.0756
speciesLactobacillus_fermentum-0.0430.06050.0766
speciesBacteroides_clarus0.0430.06050.0766
speciesLactococcus_phage_bIL670.0430.06070.0766
speciesLachnospiraceae_bacterium_8_1_57FAA0.0430.06120.077
speciesCollinsella_unclassified-0.0430.06480.0813
speciesBlautia_producta-0.0420.07270.091
familyOxalobacteraceae0.0410.07410.0925
speciesMegasphaera_elsdenii-0.040.08250.103
speciesWeissella_confusa-0.040.08750.109
speciesLactobacillus_oris-0.0380.09790.121
genusWeissella-0.0380.1020.126
genusSutterellaceae_unclassified-0.0380.1020.126
genusOxalobacter0.0370.1140.14
speciesOxalobacter_formigenes0.0370.1140.14
speciesGemella_morbillorum0.0360.1150.141
speciesRothia_mucilaginosa0.0360.1210.148
speciesLactobacillus_gasseri0.0360.1240.151
speciesBacteroides_pectinophilus0.0350.1290.157
speciesParabacteroides_goldsteinii-0.0330.1530.185
speciesKlebsiella_oxytoca-0.0330.1550.187
speciesBacteroides_salyersiae-0.0330.1560.188
speciesLactobacillus_sanfranciscensis0.0310.1740.209
speciesProteus_mirabilis-0.0310.1760.211
speciesLactobacillus_reuteri0.0310.1830.219
speciesBacteroides_salanitronis0.030.20.238
speciesBifidobacterium_breve-0.0290.2060.245
speciesParabacteroides_johnsonii0.0290.2090.248
genusSuccinatimonas-0.0290.2160.255
speciesSuccinatimonas_hippei-0.0290.2160.255
speciesStreptococcus_gordonii0.0290.2170.255
genusPeptoniphilus0.0280.2180.256
speciesCoprobacillus_sp_D60.0280.2230.261
speciesBacteroides_coprophilus-0.0280.2310.269
classDeltaproteobacteria0.0280.2320.269
orderDesulfovibrionales0.0280.2320.269
familyDesulfovibrionaceae0.0280.2320.269
speciesBacteroides_coprocola-0.0280.2330.27
speciesHoldemania_sp_AP20.0270.2470.285
speciesPorphyromonas_uenonis0.0270.2510.289
speciesEubacterium_eligens0.0250.2780.319
speciesCollinsella_intestinalis-0.0240.2970.34
speciesLactococcus_phage_936_sensu_lato0.0240.3020.345
speciesParabacteroides_merdae-0.0230.320.365
genusOdoribacter0.0230.3240.369
familyRikenellaceae0.0230.330.374
genusAlistipes0.0230.330.374
speciesBacteroides_sp_4_3_47FAA0.0220.3320.375
familySuccinivibrionaceae-0.0220.3420.385
genusButyricimonas-0.0210.370.415
speciesButyricimonas_synergistica-0.0210.370.415
speciesAlistipes_unclassified0.020.3890.435
speciesMitsuokella_multacida-0.020.3950.441
familyStaphylococcaceae0.0190.4120.459
speciesBacteroides_sp_3_1_19-0.0190.4180.464
familyPodoviridae-0.0190.4190.464
speciesEubacterium_limosum0.0180.4270.472
speciesLactococcus_phage_phi70.0180.4440.49
speciesPeptostreptococcus_stomatis0.0180.4490.494
speciesLactobacillus_amylovorus0.0170.450.494
speciesBifidobacterium_pseudocatenulatum-0.0170.4720.517
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0160.4930.539
speciesBacteroides_dorei-0.0150.5090.555
genusStaphylococcus0.0150.5140.559
genusBilophila0.0150.5220.566
speciesLactobacillus_ruminis0.0140.5480.593
speciesLeuconostoc_lactis-0.0140.550.594
speciesBacteroides_fluxus-0.0140.5510.594
speciesStreptococcus_mitis_oralis_pneumoniae-0.0140.5550.595
speciesEnterococcus_faecalis0.0140.5550.595
speciesBifidobacterium_dentium-0.0140.5590.598
speciesWeissella_cibaria-0.0120.5920.632
speciesBacteroides_barnesiae0.0120.5990.638
genusAcidaminococcus-0.0120.6080.646
speciesBacteroides_sp_2_1_220.0120.6130.65
speciesBacteroides_sp_1_1_6-0.0110.6210.657
speciesBacteroides_massiliensis-0.0110.6260.661
speciesClostridium_sp_KLE_1755-0.0110.6310.665
speciesBilophila_unclassified0.0110.6350.668
genusButyricicoccus-0.010.6610.692
speciesButyricicoccus_pullicaecorum-0.010.6610.692
speciesOdoribacter_splanchnicus0.010.6660.695
speciesCoprobacillus_sp_29_10.010.6730.701
speciesBacteroides_faecis-0.0090.7110.739
speciesEubacterium_dolichum0.0080.7330.76
speciesPrevotella_bivia0.0080.7390.765
speciesStreptococcus_anginosus0.0070.7540.778
speciesClostridium_asparagiforme-0.0070.7550.778
speciesBacteroides_cellulosilyticus-0.0070.7650.787
speciesParabacteroides_sp_D130.0060.7980.819
speciesBacteroides_caccae-0.0050.8170.836
speciesKlebsiella_phage_KP360.0050.8190.837
speciesBacteroides_eggerthii0.0050.8250.841
genusLambdalikevirus-0.0050.8350.849
speciesStreptococcus_australis0.0050.8360.849
speciesStreptococcus_lutetiensis0.0050.840.851
speciesBacteroides_uniformis0.0030.8880.898
familyViruses_noname-0.0030.9140.92
genusViruses_noname-0.0030.9140.92
speciesLactobacillus_vaginalis-0.0020.9230.927
genusTunalikevirus-0.0020.9450.947
speciesLactococcus_garvieae-0.0010.9790.979
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201143.380052767e-057.66329769169e-050.01245370221571123737.7473
Type II diabetesChina1831850.0002485924637380.0001529174331190.0874415722351896329.6209
Rheumatoid arthritisChina127980.0005057658925130.0004653036739410.152404227035726524.2272
Type II diabetesSweden53920.00146352420230.001168661708810.22404226988785626.6035
Crohns diseaseSpain17660.0008716127708680.0008453572596410.2851272789851890262.8495
ObesityDenmark1691230.0003030194545080.0002693282008570.5099237241741959864.4438
Ulcerative colitisSpain78660.0008730849449430.0008453572596410.6180630694952198372.5176
Colorectal cancerAustria64350.001411695754550.001362986455470.7610582906962432782.3082
Type II diabetesDenmark752770.0003196129922160.0002902880196240.7872600956212651986.9276
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382