MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-16 08:51:15 PST
Job id & description: 2099, ABC transporter
Query type: protein
Count queries & homologs: 1, 9
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
query_id444911CompleteK00219COG0446;COG1902unknownunknown100.0100.099.85
query_id444806CompleteK00219COG0446;COG1902unknownunknown100.0100.096.99
query_id278271CompleteK00219COG0446;COG1902unknownunknown100.084.7882.83
query_id272388CompleteK00219COG0446;COG1902unknownunknown100.084.1482.68
query_id446221CompleteK00219COG0446;COG1902unknownunknown100.0100.082.83
query_id446832CompleteK00219COG0446;COG1902unknownunknown100.0100.081.02
query_id414385CompleteK00219COG0446;COG1902unknownunknown100.0100.075.77
query_id450400CompleteK00219COG0446;COG1902unknownunknown99.5599.8571.19
query_id430850CompleteK00219COG0446;COG1902FirmicutesClostridium100.098.6670.87
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusCoprococcus0.5082.1e-1239.91e-121
speciesSubdoligranulum_unclassified0.4961.43e-1163.37e-114
genusSubdoligranulum0.4936.2e-1159.75e-113
speciesCoprococcus_catus0.4595.28e-986.23e-96
speciesCoprococcus_comes0.4479.53e-939e-91
genusAdlercreutzia0.4377.15e-884.82e-86
speciesAdlercreutzia_equolifaciens0.4377.15e-884.82e-86
familyRuminococcaceae0.4353.67e-872.17e-85
speciesRuminococcus_gnavus-0.41.01e-725.3e-71
speciesRuminococcus_obeum0.3957.2e-713.4e-69
orderCoriobacteriales0.394.47e-691.76e-67
familyCoriobacteriaceae0.394.47e-691.76e-67
speciesRoseburia_hominis0.397.58e-692.75e-67
speciesDorea_longicatena0.381.84e-656.2e-64
speciesEubacterium_hallii0.382.09e-656.58e-64
familyBacteroidales_noname0.3752.23e-635.85e-62
genusBacteroidales_noname0.3752.23e-635.85e-62
speciesBacteroidales_bacterium_ph80.3752.23e-635.85e-62
speciesCollinsella_aerofaciens0.3721.3e-623.23e-61
genusCollinsella0.379.38e-622.21e-60
speciesClostridium_leptum0.3626.81e-591.53e-57
genusRuminococcus0.362.7e-585.79e-57
genusDorea0.3581.27e-572.61e-56
classClostridia0.3543.04e-565.74e-55
orderClostridiales0.3543.04e-565.74e-55
phylumFusobacteria-0.3534.36e-567.35e-55
classFusobacteriia-0.3534.36e-567.35e-55
orderFusobacteriales-0.3534.36e-567.35e-55
familyFusobacteriaceae-0.355.34e-558.69e-54
genusFusobacterium-0.3469.89e-541.56e-52
speciesAlistipes_senegalensis0.3431.07e-521.63e-51
speciesEubacterium_ramulus0.3382.82e-514.16e-50
speciesRuminococcus_callidus0.3379.41e-511.35e-49
speciesDorea_formicigenerans0.3331.29e-491.79e-48
speciesEubacterium_ventriosum0.3253.07e-474.14e-46
speciesEubacterium_siraeum0.3244.8e-476.29e-46
genusAnaerotruncus0.3231.42e-461.81e-45
familyEubacteriaceae0.3191.63e-452.02e-44
genusEubacterium0.3191.67e-452.02e-44
speciesAnaerotruncus_unclassified0.3161.06e-441.25e-43
familyBacteroidaceae-0.3074.89e-425.5e-41
genusBacteroides-0.3074.89e-425.5e-41
speciesBifidobacterium_adolescentis0.3051.73e-411.9e-40
speciesEubacterium_rectale0.3043.23e-413.46e-40
phylumFirmicutes0.2994.85e-405.09e-39
familyRikenellaceae0.2996.58e-406.61e-39
genusAlistipes0.2996.58e-406.61e-39
genusGordonibacter0.2989.64e-409.29e-39
speciesGordonibacter_pamelaeae0.2989.64e-409.29e-39
speciesCoprobacillus_unclassified-0.2941.07e-381.01e-37
speciesRuminococcus_bromii0.2932.18e-382.02e-37
phylumActinobacteria0.2924.85e-384.32e-37
classActinobacteria0.2924.85e-384.32e-37
speciesFusobacterium_ulcerans-0.2892.16e-371.89e-36
phylumVerrucomicrobia0.2886.2e-374.88e-36
classVerrucomicrobiae0.2886.2e-374.88e-36
orderVerrucomicrobiales0.2886.2e-374.88e-36
familyVerrucomicrobiaceae0.2886.2e-374.88e-36
genusAkkermansia0.2886.2e-374.88e-36
speciesAkkermansia_muciniphila0.2886.2e-374.88e-36
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.2844.89e-363.78e-35
familyOxalobacteraceae0.2821.58e-351.2e-34
genusOxalobacter0.2812.93e-352.16e-34
speciesOxalobacter_formigenes0.2812.93e-352.16e-34
speciesAlistipes_shahii0.2797.53e-355.47e-34
speciesClostridium_ramosum-0.2741.37e-339.8e-33
genusBarnesiella0.2724.57e-333.17e-32
speciesBarnesiella_intestinihominis0.2724.57e-333.17e-32
speciesMegasphaera_micronuciformis-0.2716.51e-334.45e-32
speciesCoprococcus_sp_ART55_10.2717.9e-335.33e-32
speciesLachnospiraceae_bacterium_3_1_46FAA0.2719.59e-336.38e-32
classBacteroidia-0.2629.15e-315.84e-30
orderBacteroidales-0.2629.15e-315.84e-30
phylumBacteroidetes-0.2629.16e-315.84e-30
speciesFusobacterium_varium-0.2621.03e-306.48e-30
speciesAlistipes_putredinis0.2595.17e-303.21e-29
speciesAlistipes_finegoldii0.2595.88e-303.6e-29
speciesAlistipes_indistinctus0.2581.04e-296.29e-29
speciesMethanobrevibacter_smithii0.2571.17e-296.99e-29
genusHoldemania0.2562.07e-291.22e-28
speciesClostridium_nexile-0.2553.7e-292.16e-28
speciesAnaerostipes_unclassified-0.2554.51e-292.6e-28
genusMethanobrevibacter0.2545.29e-293.01e-28
classMethanobacteria0.2546.02e-293.3e-28
orderMethanobacteriales0.2546.02e-293.3e-28
familyMethanobacteriaceae0.2546.02e-293.3e-28
genusCoprobacillus-0.2539.47e-295.14e-28
speciesRuminococcus_sp_5_1_39BFAA0.2531.25e-286.7e-28
genusPseudoflavonifractor0.2513.13e-281.64e-27
speciesPseudoflavonifractor_capillosus0.2513.13e-281.64e-27
phylumEuryarchaeota0.2457.05e-273.66e-26
speciesHoldemania_filiformis0.2357.95e-254.08e-24
genusDesulfovibrio0.2331.88e-249.54e-24
speciesFusobacterium_mortiferum-0.2272.47e-231.24e-22
genusFaecalibacterium0.2272.62e-231.29e-22
speciesFaecalibacterium_prausnitzii0.2272.62e-231.29e-22
speciesOlsenella_unclassified0.2249.15e-234.45e-22
speciesAlistipes_sp_AP110.2231.83e-228.81e-22
genusBifidobacterium0.2222.82e-221.34e-21
genusVeillonella-0.2213.37e-221.59e-21
speciesLachnospiraceae_bacterium_7_1_58FAA0.2213.54e-221.65e-21
orderBifidobacteriales0.2214.7e-222.15e-21
familyBifidobacteriaceae0.2214.7e-222.15e-21
speciesEubacterium_biforme0.2163.81e-211.73e-20
speciesVeillonella_dispar-0.2154.52e-212.03e-20
speciesLachnospiraceae_bacterium_6_1_63FAA-0.2154.55e-212.03e-20
speciesOscillibacter_unclassified0.2141.02e-204.5e-20
speciesClostridium_sp_L2_500.2131.3e-205.68e-20
genusOdoribacter0.2131.41e-206.11e-20
speciesVeillonella_unclassified-0.2112.46e-201.06e-19
speciesVeillonella_parvula-0.215.19e-202.21e-19
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2097.2e-203.03e-19
speciesRuminococcus_lactaris0.2053.12e-191.3e-18
speciesMethanobrevibacter_unclassified0.2053.43e-191.42e-18
speciesAlistipes_onderdonkii0.2053.65e-191.5e-18
familyOscillospiraceae0.2038.56e-193.45e-18
genusOscillibacter0.2038.56e-193.45e-18
genusMitsuokella0.2021.06e-184.24e-18
speciesEubacterium_eligens0.2021.25e-184.96e-18
speciesCampylobacter_concisus-0.2011.4e-185.51e-18
speciesOdoribacter_splanchnicus0.22.97e-181.16e-17
speciesPrevotella_buccae-0.1985.1e-181.97e-17
genusOlsenella0.1977.04e-182.7e-17
classDeltaproteobacteria0.1961.14e-174.27e-17
orderDesulfovibrionales0.1961.14e-174.27e-17
familyDesulfovibrionaceae0.1961.14e-174.27e-17
speciesMitsuokella_unclassified0.1961.31e-174.87e-17
speciesBifidobacterium_longum0.1934.23e-171.56e-16
speciesHaemophilus_parainfluenzae-0.1917.31e-172.67e-16
genusButyrivibrio0.1917.45e-172.7e-16
genusRuminococcaceae_noname0.1918.24e-172.95e-16
speciesRuminococcaceae_bacterium_D160.1918.24e-172.95e-16
genusHaemophilus-0.1918.32e-172.95e-16
speciesBacteroides_fragilis-0.1891.76e-166.2e-16
orderPasteurellales-0.1882.44e-168.47e-16
familyPasteurellaceae-0.1882.44e-168.47e-16
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1873.69e-161.27e-15
speciesParabacteroides_unclassified-0.185.02e-151.72e-14
speciesClostridium_bolteae-0.1787.95e-152.7e-14
familyLachnospiraceae0.1781.04e-143.51e-14
speciesVeillonella_atypica-0.1752.37e-147.93e-14
genusCoprobacter0.1752.87e-149.47e-14
speciesCoprobacter_fastidiosus0.1752.87e-149.47e-14
speciesClostridium_clostridioforme-0.1734.89e-141.6e-13
speciesHoldemania_unclassified0.1735.39e-141.75e-13
speciesAnaerostipes_hadrus0.1682.65e-138.57e-13
speciesBlautia_producta-0.1683.07e-139.86e-13
genusActinobacillus-0.1674.06e-131.29e-12
speciesActinobacillus_unclassified-0.1674.06e-131.29e-12
speciesRuminococcus_torques0.1665.17e-131.63e-12
speciesAnaerotruncus_colihominis0.1656.8e-132.13e-12
speciesClostridium_symbiosum-0.1648.47e-132.63e-12
speciesFusobacterium_nucleatum-0.1631.39e-124.29e-12
speciesDesulfovibrio_piger0.1561.24e-113.8e-11
speciesDesulfovibrio_desulfuricans0.1542.49e-117.58e-11
speciesClostridiales_bacterium_1_7_47FAA-0.1523.69e-111.12e-10
phylumProteobacteria-0.1523.92e-111.18e-10
genusBilophila0.1514.65e-111.39e-10
speciesBilophila_unclassified0.158.07e-112.4e-10
genusAggregatibacter-0.1498.85e-112.61e-10
speciesStreptococcus_thermophilus0.1481.39e-104.08e-10
classGammaproteobacteria-0.1471.49e-104.34e-10
speciesBilophila_wadsworthia0.1471.94e-105.62e-10
speciesLactobacillus_salivarius-0.1462.2e-106.33e-10
speciesBacteroides_thetaiotaomicron-0.1462.34e-106.69e-10
speciesDorea_unclassified-0.1435.24e-101.49e-09
speciesLachnospiraceae_bacterium_1_1_57FAA0.1427.77e-102.2e-09
speciesCoprococcus_eutactus0.1419.2e-102.58e-09
speciesParabacteroides_merdae0.1419.59e-102.68e-09
speciesLachnospiraceae_bacterium_2_1_46FAA-0.141.22e-093.39e-09
speciesHaemophilus_paraphrohaemolyticus-0.141.34e-093.7e-09
speciesStreptococcus_mitis_oralis_pneumoniae-0.1382.31e-096.34e-09
speciesButyrivibrio_unclassified0.1354.29e-091.17e-08
speciesAggregatibacter_segnis-0.1292.15e-085.83e-08
genusPantoea-0.1292.43e-086.52e-08
speciesPantoea_unclassified-0.1292.43e-086.52e-08
speciesSubdoligranulum_sp_4_3_54A2FAA0.1283.08e-088.21e-08
familyAcidaminococcaceae0.1273.93e-081.04e-07
speciesParaprevotella_unclassified0.1264.08e-081.08e-07
genusParaprevotella0.1264.2e-081.1e-07
speciesLactobacillus_ruminis0.1264.55e-081.19e-07
speciesKlebsiella_pneumoniae-0.1264.99e-081.29e-07
genusFlavonifractor-0.1255.48e-081.41e-07
speciesFlavonifractor_plautii-0.1255.48e-081.41e-07
speciesParaprevotella_clara0.1246.96e-081.78e-07
speciesPorphyromonas_asaccharolytica0.1247.26e-081.84e-07
speciesParaprevotella_xylaniphila0.1248e-082.02e-07
speciesMitsuokella_multacida0.1238.92e-082.24e-07
genusKlebsiella-0.1239.32e-082.33e-07
speciesLachnospiraceae_bacterium_5_1_57FAA-0.1231.01e-072.51e-07
speciesBacteroides_ovatus-0.1221.34e-073.31e-07
speciesHaemophilus_sputorum-0.1211.45e-073.56e-07
speciesPropionibacterium_freudenreichii0.1192.21e-075.4e-07
speciesEubacterium_cylindroides0.1174.13e-071e-06
genusCatenibacterium0.1164.38e-071.05e-06
speciesCatenibacterium_mitsuokai0.1164.38e-071.05e-06
classErysipelotrichia0.1147.25e-071.72e-06
orderErysipelotrichales0.1147.25e-071.72e-06
familyErysipelotrichaceae0.1147.25e-071.72e-06
speciesEubacterium_dolichum-0.1147.56e-071.78e-06
speciesDialister_succinatiphilus0.1139.92e-072.33e-06
genusMegasphaera-0.1131.02e-062.38e-06
genusPorphyromonas0.1121.13e-062.63e-06
genusClostridiales_noname-0.112.06e-064.77e-06
speciesBifidobacterium_catenulatum0.1092.09e-064.81e-06
speciesBifidobacterium_bifidum0.1073.5e-068.02e-06
speciesBlautia_hydrogenotrophica0.1073.64e-068.3e-06
genusPhascolarctobacterium0.1064.17e-069.42e-06
speciesPhascolarctobacterium_succinatutens0.1064.17e-069.42e-06
speciesButyrivibrio_crossotus0.1055.57e-061.25e-05
genusDialister0.1055.84e-061.31e-05
speciesClostridium_hathewayi-0.1047.09e-061.58e-05
speciesBacteroides_eggerthii0.1021.05e-052.33e-05
genusErysipelotrichaceae_noname0.1011.33e-052.93e-05
speciesLachnospiraceae_bacterium_5_1_63FAA0.11.45e-053.18e-05
speciesClostridium_perfringens-0.11.52e-053.32e-05
speciesStreptococcus_pasteurianus-0.11.54e-053.35e-05
speciesLactococcus_phage_P6800.0991.72e-053.72e-05
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0982.19e-054.72e-05
speciesRoseburia_inulinivorans0.0982.26e-054.85e-05
speciesBacteroides_vulgatus-0.0953.87e-058.27e-05
speciesPeptostreptococcus_anaerobius0.0944.7e-059.99e-05
genusLactococcus0.0944.73e-050.0001
familySiphoviridae0.0944.77e-050.000101
genusButyricicoccus-0.0935.26e-050.00011
speciesButyricicoccus_pullicaecorum-0.0935.26e-050.00011
orderEnterobacteriales-0.0936.16e-050.000128
familyEnterobacteriaceae-0.0936.16e-050.000128
phylumViruses_noname0.0926.31e-050.000129
classViruses_noname0.0926.31e-050.000129
speciesTuricibacter_unclassified0.0926.34e-050.00013
genusCampylobacter-0.0927.27e-050.000148
familyClostridiaceae-0.0917.64e-050.000155
genusTuricibacter0.0917.78e-050.000157
speciesLactobacillus_mucosae-0.0918.8e-050.000177
genusClostridium-0.099.46e-050.000189
genusSiphoviridae_noname0.090.0001020.000203
speciesStreptococcus_infantarius-0.0890.0001090.000216
speciesRoseburia_intestinalis0.0890.000120.000237
familyCampylobacteraceae-0.0880.0001310.000257
genusLeuconostoc0.0880.0001310.000257
speciesBacteroides_intestinalis0.0880.0001330.000259
genusProteus-0.0870.0001660.000322
genusMorganella-0.0870.0001710.000329
speciesMorganella_morganii-0.0870.0001710.000329
classEpsilonproteobacteria-0.0860.000190.000363
orderCampylobacterales-0.0860.000190.000363
speciesBacteroides_xylanisolvens-0.0860.0002010.000383
speciesProteus_mirabilis-0.0850.0002490.000472
speciesAcidaminococcus_fermentans0.0850.000250.000472
genusEscherichia-0.0850.0002540.000478
speciesEscherichia_coli-0.0840.0002990.00056
speciesRuminococcus_champanellensis0.0830.0003190.000595
familyPrevotellaceae0.0830.0003230.0006
speciesLactobacillus_fermentum-0.0810.0004220.000781
speciesBifidobacterium_animalis0.0810.0004760.000878
genusButyricimonas0.080.0005440.000995
speciesButyricimonas_synergistica0.080.0005440.000995
speciesParabacteroides_goldsteinii0.080.0005680.00104
genusLachnospiraceae_noname0.080.0005750.00104
speciesRuminococcus_sp_JC3040.0790.0006430.00116
genusPropionibacterium0.0790.0006690.00121
speciesParabacteroides_johnsonii0.0780.0006960.00125
speciesLactococcus_phage_jm20.0780.0007520.00134
genusParabacteroides-0.0770.0008840.00157
speciesLactococcus_lactis0.0760.000970.00172
genusRoseburia0.0760.001010.00179
speciesStreptococcus_lutetiensis-0.0760.001030.00181
genusMethanosphaera0.0740.001390.00243
speciesMethanosphaera_stadtmanae0.0740.001390.00243
orderViruses_noname0.0730.001550.0027
speciesTuricibacter_sanguinis0.0720.001960.0034
speciesErysipelotrichaceae_bacterium_21_30.0710.0020.00346
speciesLactobacillus_plantarum0.0670.003710.00638
familyClostridiales_noname-0.0670.003720.00638
speciesC2likevirus_unclassified0.0670.003780.00646
speciesBacteroides_stercoris-0.0670.003870.00659
speciesBacteroides_cellulosilyticus0.0670.00390.00662
genusC2likevirus0.0650.004610.0078
genusPyramidobacter0.0650.004980.00836
speciesPyramidobacter_piscolens0.0650.004980.00836
speciesBacteroides_pectinophilus0.0650.00520.0087
speciesLactobacillus_casei_paracasei0.0640.00550.00917
familyLeuconostocaceae0.0640.005870.00976
speciesEnterobacter_aerogenes-0.0630.00660.0109
familyMyoviridae-0.0620.007130.0118
speciesOdoribacter_laneus0.0620.007750.0127
orderCaudovirales0.0610.00830.0136
speciesBifidobacterium_breve-0.0590.01040.0169
speciesEggerthella_unclassified-0.0590.01040.0169
speciesBacteroides_caccae0.0580.01140.0185
genusParvimonas0.0580.01150.0186
speciesParvimonas_unclassified0.0580.01170.0188
speciesPorphyromonas_uenonis0.0580.01180.0189
speciesPeptostreptococcus_stomatis-0.0580.01190.019
speciesBacteroides_oleiciplenus-0.0580.0120.0191
speciesErysipelotrichaceae_bacterium_6_1_450.0580.0120.0191
phylumSynergistetes0.0580.01250.0195
classSynergistia0.0580.01250.0195
orderSynergistales0.0580.01250.0195
familyBacillales_noname-0.0580.01250.0195
familySynergistaceae0.0580.01250.0195
genusGemella-0.0580.01250.0195
genusAcidaminococcus0.0570.0130.0202
speciesOscillibacter_sp_KLE_1728-0.0570.0140.0217
speciesSutterella_wadsworthensis0.0570.01420.0219
speciesLactobacillus_oris-0.0570.01440.0221
speciesLactococcus_phage_phi70.0550.0180.0276
genusAnaerostipes0.0550.01830.0278
speciesCollinsella_intestinalis-0.0550.01830.0278
speciesDialister_invisus0.0550.01830.0278
genusMyoviridae_noname-0.0530.02230.0337
genusEggerthella-0.0520.02540.0383
speciesClostridium_sp_ATCC_BAA_442-0.0510.02650.0398
speciesPeptostreptococcaceae_noname_unclassified0.0510.02730.0409
speciesBacteroides_clarus0.0510.02760.0412
speciesMegamonas_unclassified-0.050.02920.0435
speciesEggerthella_lenta0.050.02960.0439
speciesStreptococcus_sanguinis-0.050.02990.0442
genusMegamonas-0.050.03030.0447
speciesStreptococcus_gordonii-0.0490.03260.0479
speciesLactobacillus_crispatus-0.0490.03430.0503
genusCoriobacteriaceae_noname0.0490.03460.0506
genusLactobacillus0.0480.03710.054
speciesClostridium_sp_KLE_1755-0.0470.0420.061
orderBacillales-0.0470.04320.0625
familyLactobacillaceae0.0470.04340.0626
speciesPrevotella_stercorea-0.0470.04380.063
familyClostridiales_Family_XI_Incertae_Sedis0.0470.04430.0636
speciesLactobacillus_sanfranciscensis0.0460.04850.0694
genusSutterella0.0450.05010.0714
speciesSutterella_parvirubra-0.0450.05030.0715
speciesLactococcus_phage_936_sensu_lato0.0450.05370.0761
speciesLactobacillus_vaginalis-0.0440.05660.08
speciesCoriobacteriaceae_bacterium_phI0.0440.05710.0805
speciesClostridium_bartlettii0.0430.06070.0853
classBetaproteobacteria-0.0420.07160.1
speciesLactococcus_garvieae0.0410.0730.102
speciesBacteroides_coprophilus0.0410.0740.103
speciesStreptococcus_anginosus-0.040.080.111
speciesCoprobacillus_sp_29_10.0390.09250.128
speciesCitrobacter_unclassified-0.0380.09710.134
genusAcidaminococcaceae_unclassified0.0380.09780.135
speciesParabacteroides_sp_D130.0380.09860.135
speciesLactobacillus_delbrueckii0.0380.09880.135
speciesSlackia_piriformis0.0380.09950.136
speciesBacteroides_nordii0.0380.09970.136
speciesCollinsella_unclassified-0.0370.1050.142
speciesRothia_mucilaginosa-0.0370.1090.147
familyPropionibacteriaceae0.0370.110.148
genusParasutterella0.0370.1110.149
speciesParasutterella_excrementihominis0.0370.1110.149
speciesBacteroides_barnesiae0.0370.1120.15
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0370.1140.152
speciesBifidobacterium_angulatum0.0360.1150.153
speciesPrevotella_copri0.0360.1160.154
speciesBacteroides_finegoldii0.0360.1170.155
speciesBacteroides_salyersiae0.0360.1220.16
speciesParabacteroides_distasonis-0.0360.1220.16
speciesErysipelotrichaceae_bacterium_3_1_53-0.0350.1270.167
speciesBifidobacterium_dentium-0.0350.1280.167
speciesMegamonas_rupellensis-0.0350.1290.168
speciesKlebsiella_sp_MS_92_3-0.0350.130.169
familyVeillonellaceae-0.0350.1310.169
speciesEnterococcus_faecalis-0.0350.1310.169
genusPeptostreptococcus-0.0350.1320.17
familyEnterococcaceae-0.0330.1480.19
genusEnterococcus-0.0330.1510.194
genusCitrobacter-0.0320.160.205
orderBurkholderiales-0.0320.1620.206
speciesClostridium_asparagiforme0.0320.1620.206
speciesBacteroides_faecis0.0320.1650.209
speciesLactobacillus_gasseri-0.0310.1770.224
speciesBacteroides_uniformis0.0310.1840.232
speciesOdoribacter_unclassified0.0310.1870.235
speciesBacteroides_massiliensis0.030.1910.24
genusClostridiaceae_noname-0.030.20.25
speciesClostridiaceae_bacterium_JC118-0.030.20.25
familyPorphyromonadaceae0.030.2010.25
familyPeptostreptococcaceae0.0290.2160.267
speciesStreptococcus_phage_Sfi210.0290.2160.267
speciesAlistipes_unclassified-0.0290.2160.267
speciesMegasphaera_elsdenii0.0280.2190.27
speciesStreptococcus_mutans-0.0280.2210.272
familyMicrococcaceae-0.0280.2330.286
genusEnterobacter-0.0280.2340.286
speciesEnterobacter_cloacae-0.0270.2350.287
genusRothia-0.0270.2410.293
familySutterellaceae-0.0270.250.303
genusBurkholderiales_noname0.0260.2560.309
speciesBurkholderiales_bacterium_1_1_470.0260.2560.309
speciesStreptococcus_australis-0.0260.2610.314
speciesBacteroides_sp_2_1_220.0260.2650.318
familyBurkholderiales_noname0.0260.2690.322
speciesCoprobacillus_sp_D60.0250.2770.331
speciesWeissella_cibaria-0.0250.280.334
genusBlautia0.0250.2820.335
speciesStreptococcus_vestibularis-0.0250.2880.342
genusPeptostreptococcaceae_noname0.0240.2930.347
speciesAcidaminococcus_unclassified0.0240.3020.356
orderLactobacillales0.0240.3040.358
speciesEubacterium_sp_3_1_31-0.0240.3060.359
orderActinomycetales0.0240.3090.362
speciesCitrobacter_freundii-0.0230.3130.365
speciesAlistipes_sp_HGB50.0230.3130.365
orderAeromonadales-0.0230.3240.377
speciesOscillibacter_sp_KLE_17450.0230.3260.378
classBacilli0.0220.3360.389
speciesPrevotella_bivia0.0220.3370.389
genusSlackia0.0220.3390.39
speciesKlebsiella_unclassified-0.0220.3490.401
speciesBacteroides_salanitronis0.0210.3580.41
speciesLactobacillus_rhamnosus0.0210.3660.418
genusPrevotella0.0210.3670.418
familyPodoviridae-0.0210.3720.423
genusPeptoniphilus0.020.3910.443
speciesKlebsiella_phage_KP360.020.3910.443
speciesLactobacillus_acidophilus0.020.3920.443
speciesLactobacillus_reuteri0.0190.4120.464
familySuccinivibrionaceae0.0190.4230.475
speciesKlebsiella_oxytoca-0.0180.4360.489
speciesBacteroides_sp_1_1_6-0.0170.4510.504
classNegativicutes0.0170.4530.504
orderSelenomonadales0.0170.4530.504
speciesEubacterium_limosum0.0170.4540.504
familyStaphylococcaceae0.0160.4920.545
speciesEnterobacteria_phage_HK544-0.0160.4930.545
genusStaphylococcus0.0160.4940.545
speciesBacteroides_plebeius-0.0160.5020.552
speciesEggerthella_sp_1_3_56FAA0.0150.5040.553
genusSutterellaceae_unclassified0.0150.510.559
speciesBacteroides_sp_4_3_47FAA0.0150.5140.562
speciesMegasphaera_unclassified0.0150.5280.575
familyActinomycetaceae0.0150.5290.575
speciesHoldemania_sp_AP2-0.0140.5450.591
speciesLactobacillus_amylovorus-0.0140.5590.605
genusSuccinatimonas0.0130.580.625
speciesSuccinatimonas_hippei0.0130.580.625
genusWeissella-0.0130.5840.628
speciesLeuconostoc_lactis0.0130.5850.628
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0120.5980.64
speciesParabacteroides_sp_20_30.0120.6020.643
speciesClostridium_spiroforme0.0120.6060.646
genusLambdalikevirus-0.0110.6310.671
genusTunalikevirus0.0110.6450.684
genusActinomyces0.010.6740.713
familyViruses_noname-0.0090.6860.723
genusViruses_noname-0.0090.6860.723
orderPseudomonadales-0.0090.6880.723
speciesLactococcus_phage_bIL67-0.0090.6950.728
speciesBifidobacterium_pseudocatenulatum-0.0090.6960.728
speciesEscherichia_unclassified0.0090.7120.744
speciesMegamonas_hypermegale-0.0080.7150.745
speciesStreptococcus_parasanguinis-0.0080.7330.762
speciesBacteroides_fluxus0.0080.7420.77
speciesCollinsella_tanakaei0.0070.7560.783
speciesStreptococcus_salivarius0.0070.7660.791
speciesEnterococcus_faecium-0.0070.7790.802
speciesMegamonas_funiformis0.0060.780.802
speciesAcidaminococcus_intestini0.0060.7980.819
genusStreptococcus-0.0060.8020.821
familyStreptococcaceae-0.0030.8930.912
genusSolobacterium0.0030.9050.921
speciesSolobacterium_moorei0.0030.9050.921
speciesRoseburia_unclassified-0.0020.9170.931
speciesWeissella_confusa-0.0020.9280.94
speciesErysipelotrichaceae_bacterium_2_2_44A0.0020.9310.941
speciesBacteroides_dorei0.0010.9610.969
speciesBacteroides_coprocola0.0010.9630.969
speciesGemella_morbillorum-0.0010.980.984
speciesBacteroides_sp_3_1_190.00.9840.986
speciesClostridium_citroniae0.00.9910.991
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.0008416909324360.003765886181193.52778492098e-0818426.18764
Crohns diseaseSpain17660.001029322561370.00383393032547.2790080238e-0517075.67581
ObesityDenmark1691230.005016621640340.004099151116750.16131273154965431.7451
Type II diabetesChina1831850.004061183277710.003544367629290.1983005332051320043.6234
Type II diabetesDenmark752770.006643730155880.004657575094890.2016133335931308742.8983
Ulcerative colitisSpain78660.004734650235420.00383393032540.5954551207542148470.8715
Type II diabetesSweden53920.007859665385630.006628406595260.7089251651022160773.1697
Colorectal cancerAustria64350.005952398607180.008205381083030.7225557770552358679.8011
Rheumatoid arthritisChina127980.007555336659980.007207455917940.7827007731642445081.5353
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382