MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-19 10:37:37 PST
Job id & description: 2101, test
Query type: dna
Count queries & homologs: 22, 27
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
iucA607050CompleteK03894COG4264ProteobacteriaCitrobacter100.0100.0100.0
iucA599224CompleteK03894COG4264ProteobacteriaEscherichia99.7299.2288.81
iucA607708CompleteK03894COG4264ProteobacteriaEscherichia99.7299.7288.59
iroB1927258CompleteK14368COG1819ProteobacteriaKlebsiella100.0100.0100.0
iroB1929494CompleteK14368COG1819ProteobacteriaEnterobacter100.0100.092.11
peg3442814023CompleteK07790COG0697ProteobacteriaKlebsiella100.092.3699.4
iroB1769736CompleteK14368COG1819ProteobacteriaEscherichia100.095.8888.72
peg3442767298CompleteK07790COG0697ProteobacteriaKlebsiella99.490.695.05
iroB1927545CompleteK14368COG1819ProteobacteriaEnterobacter99.9199.9183.6
prmpA4476812CompleteunknownCOG2771ProteobacteriaKlebsiella100.092.4298.8
prmpA4495634CompleteunknownCOG2771ProteobacteriaKlebsiella100.092.4293.36
gi|556503834:c710646-7102006037524Lack 5'-endK03711COG0735ProteobacteriaEscherichia100.096.7599.55
dinB_14932238CompleteK02346COG0389ProteobacteriaEscherichia100.077.7292.0
putP_15954593Lack 5'-endK11928COG0591ProteobacteriaEscherichia89.4786.6293.38
iucA646335CompleteK03894COG4264ProteobacteriaEnterobacter77.7879.5274.47
gi|556503834:c710646-7102006155476CompleteK03711COG0735ProteobacteriaCitrobacter100.0100.089.26
gi|556503834:c710646-7102006169237CompleteK03711COG0735ProteobacteriaCitrobacter97.7697.7688.33
trpA_14726048Lack both endsK01695COG0159ProteobacteriaEscherichia76.8371.4887.94
peg5897749403CompleteunknownCOG0599ProteobacteriaKlebsiella100.0100.098.19
phoE_15803421Lack 5'-endK11929COG3203ProteobacteriaKlebsiella96.983.2387.96
putP_14785031Lack 5'-endK11928COG0591ProteobacteriaEnterobacter98.6875.3885.84
gi|556503834:c710646-7102006163690CompleteK03711COG0735ProteobacteriaEnterobacter100.0100.085.52
iucA646333CompleteK03894COG4264ProteobacteriaEnterobacter77.178.8373.32
gi|556503834:c710646-7102006165217CompleteK03711COG0735ProteobacteriaEnterobacter100.0100.085.23
gi|556503834:c710646-7102006112317CompleteK03711NOG131887;COG0735ProteobacteriaEnterobacter97.7696.4785.58
gi|556503834:c710646-7102006092467CompleteK03711COG0735ProteobacteriaKlebsiella97.7696.4784.44
putP_16048580Lack 5'-endK11928COG0591ProteobacteriaKlebsiella82.0281.4886.36
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.8970.00.0
orderEnterobacteriales0.950.00.0
familyEnterobacteriaceae0.950.00.0
genusEscherichia0.880.00.0
speciesEscherichia_coli0.860.00.0
phylumProteobacteria0.7071.65e-2831.3e-281
genusKlebsiella0.6182.39e-1971.61e-195
speciesKlebsiella_pneumoniae0.5931.18e-1776.96e-176
speciesEscherichia_unclassified0.542.63e-1421.38e-140
genusPantoea0.4521.29e-945.54e-93
speciesPantoea_unclassified0.4521.29e-945.54e-93
genusEnterobacter0.4185.18e-802.04e-78
speciesEnterobacter_cloacae0.4114.14e-771.5e-75
speciesRuminococcus_gnavus0.3624.66e-591.57e-57
familyFusobacteriaceae0.3461.33e-534.19e-52
genusFusobacterium0.3413.8e-521.12e-50
phylumFusobacteria0.341.06e-512.63e-50
classFusobacteriia0.341.06e-512.63e-50
orderFusobacteriales0.341.06e-512.63e-50
genusCitrobacter0.3322.54e-495.99e-48
speciesClostridium_nexile0.3275.81e-481.31e-46
speciesCitrobacter_unclassified0.3183.32e-457.12e-44
speciesCitrobacter_freundii0.3143.37e-446.92e-43
speciesSubdoligranulum_unclassified-0.3082.18e-424.29e-41
genusSubdoligranulum-0.3012.45e-404.63e-39
speciesEubacterium_siraeum-0.2998.15e-401.48e-38
genusCoprobacillus0.2959.62e-391.68e-37
speciesLachnospiraceae_bacterium_7_1_58FAA-0.291.49e-372.51e-36
speciesClostridium_bolteae0.2861.79e-362.91e-35
speciesClostridium_hathewayi0.2741.38e-332.17e-32
speciesCoprobacillus_unclassified0.2723.96e-336.03e-32
speciesKlebsiella_oxytoca0.2716.91e-331.02e-31
genusButyrivibrio-0.2643.64e-315.21e-30
speciesClostridium_ramosum0.2611.77e-302.46e-29
speciesAnaerotruncus_unclassified-0.2571.72e-292.32e-28
speciesKlebsiella_unclassified0.2554.27e-295.6e-28
genusWeissella0.2431.95e-262.49e-25
speciesClostridium_symbiosum0.2399.11e-261.13e-24
genusCoprococcus-0.2381.66e-252.01e-24
speciesEubacterium_ramulus-0.2356.3e-257.26e-24
genusPseudoflavonifractor-0.2356.46e-257.26e-24
speciesPseudoflavonifractor_capillosus-0.2356.46e-257.26e-24
speciesClostridium_perfringens0.2341.34e-241.47e-23
familyClostridiaceae0.236.33e-246.79e-23
genusEnterococcus0.2291.34e-231.41e-22
genusClostridium0.2282.21e-232.27e-22
familyEnterococcaceae0.2272.64e-232.65e-22
familyRuminococcaceae-0.2263.66e-233.6e-22
speciesVeillonella_parvula0.2257.55e-237.27e-22
speciesSutterella_wadsworthensis-0.2249.99e-239.43e-22
genusMegasphaera0.2231.55e-221.43e-21
speciesFusobacterium_ulcerans0.2231.85e-221.68e-21
genusBarnesiella-0.2222.28e-221.99e-21
speciesBarnesiella_intestinihominis-0.2222.28e-221.99e-21
speciesWeissella_confusa0.2222.72e-222.33e-21
speciesBacteroides_fragilis0.226.21e-225.23e-21
speciesBifidobacterium_adolescentis-0.2191.06e-218.78e-21
speciesClostridium_leptum-0.2164.23e-213.44e-20
speciesEubacterium_rectale-0.2147.91e-216.33e-20
speciesStreptococcus_anginosus0.2131.23e-209.68e-20
speciesMegasphaera_micronuciformis0.2131.3e-201.01e-19
speciesLactobacillus_salivarius0.2131.42e-201.08e-19
classClostridia-0.2112.43e-201.79e-19
orderClostridiales-0.2112.43e-201.79e-19
genusSutterella-0.214.23e-203.07e-19
speciesClostridiales_bacterium_1_7_47FAA0.214.35e-203.09e-19
genusVeillonella0.214.38e-203.09e-19
genusEubacterium-0.2096.6e-204.58e-19
familyEubacteriaceae-0.2096.82e-204.67e-19
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2081.15e-197.75e-19
speciesFusobacterium_nucleatum0.2081.17e-197.78e-19
speciesCoprococcus_comes-0.2044.25e-192.79e-18
orderLactobacillales0.2044.45e-192.88e-18
classBacilli0.2036.36e-194.06e-18
speciesBacteroides_uniformis-0.2038.27e-195.2e-18
speciesEggerthella_unclassified0.2029.45e-195.87e-18
speciesFusobacterium_mortiferum0.2021.28e-187.85e-18
speciesFusobacterium_varium0.1993.45e-182.09e-17
speciesLactococcus_garvieae0.1993.77e-182.25e-17
speciesMegamonas_unclassified0.1977.06e-184.17e-17
genusMegamonas0.1978.7e-185.07e-17
familyLeuconostocaceae0.1961.25e-177.2e-17
speciesMitsuokella_unclassified-0.1942.25e-171.28e-16
speciesDorea_longicatena-0.1942.9e-171.63e-16
speciesEnterobacter_aerogenes0.1942.98e-171.65e-16
genusEggerthella0.1943.06e-171.68e-16
speciesClostridium_citroniae0.1917e-173.8e-16
speciesButyrivibrio_unclassified-0.1917.68e-174.12e-16
speciesStreptococcus_infantarius0.191.03e-165.46e-16
familyBacteroidales_noname-0.1891.5e-167.7e-16
genusBacteroidales_noname-0.1891.5e-167.7e-16
speciesBacteroidales_bacterium_ph8-0.1891.5e-167.7e-16
speciesLactobacillus_mucosae0.1891.83e-169.29e-16
speciesEnterococcus_faecalis0.1882.24e-161.12e-15
genusDorea-0.1882.68e-161.33e-15
genusMitsuokella-0.1873.82e-161.88e-15
speciesWeissella_cibaria0.1864.43e-162.16e-15
genusCoprobacter-0.1865.03e-162.4e-15
speciesCoprobacter_fastidiosus-0.1865.03e-162.4e-15
speciesC2likevirus_unclassified-0.1821.84e-158.68e-15
speciesEubacterium_hallii-0.1813.26e-151.52e-14
speciesRoseburia_hominis-0.183.8e-151.76e-14
genusC2likevirus-0.184.47e-152.05e-14
genusFlavonifractor0.1797.11e-153.2e-14
speciesFlavonifractor_plautii0.1797.11e-153.2e-14
speciesCoprococcus_catus-0.1788.62e-153.84e-14
speciesOscillibacter_unclassified-0.1752.22e-149.79e-14
familyRikenellaceae-0.1752.41e-141.04e-13
genusAlistipes-0.1752.41e-141.04e-13
familyOscillospiraceae-0.1752.46e-141.05e-13
genusOscillibacter-0.1752.46e-141.05e-13
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1752.63e-141.11e-13
phylumSynergistetes0.1743.98e-141.62e-13
classSynergistia0.1743.98e-141.62e-13
orderSynergistales0.1743.98e-141.62e-13
familySynergistaceae0.1743.98e-141.62e-13
genusPyramidobacter0.1726e-142.4e-13
speciesPyramidobacter_piscolens0.1726e-142.4e-13
speciesVeillonella_unclassified0.1711.07e-134.24e-13
speciesAnaerostipes_hadrus-0.171.3e-135.11e-13
phylumVerrucomicrobia-0.1691.68e-136.29e-13
classVerrucomicrobiae-0.1691.68e-136.29e-13
orderVerrucomicrobiales-0.1691.68e-136.29e-13
familyVerrucomicrobiaceae-0.1691.68e-136.29e-13
genusAkkermansia-0.1691.68e-136.29e-13
speciesAkkermansia_muciniphila-0.1691.68e-136.29e-13
phylumFirmicutes-0.1682.43e-139.03e-13
speciesBifidobacterium_dentium0.1683.02e-131.11e-12
speciesAlistipes_senegalensis-0.1673.68e-131.35e-12
speciesStreptococcus_salivarius0.1673.85e-131.4e-12
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1665.18e-131.87e-12
genusRuminococcaceae_noname-0.1648.46e-133e-12
speciesRuminococcaceae_bacterium_D16-0.1648.46e-133e-12
speciesAlistipes_shahii-0.1649.18e-133.23e-12
genusAnaerotruncus-0.1621.59e-125.56e-12
speciesStreptococcus_thermophilus-0.1612.6e-129.02e-12
speciesBifidobacterium_pseudocatenulatum0.1612.65e-129.13e-12
familyBacillales_noname0.1595.04e-121.71e-11
genusGemella0.1595.04e-121.71e-11
genusPrevotella0.1587.17e-122.42e-11
speciesVeillonella_dispar0.1577.78e-122.6e-11
genusOdoribacter-0.1561.22e-114.06e-11
speciesButyrivibrio_crossotus-0.1561.33e-114.39e-11
speciesAnaerostipes_unclassified0.1551.73e-115.67e-11
speciesCollinsella_aerofaciens-0.1551.8e-115.86e-11
speciesBacteroides_plebeius0.1541.94e-116.27e-11
speciesCoprococcus_sp_ART55_1-0.1532.97e-119.54e-11
speciesAlistipes_putredinis-0.1533.1e-119.89e-11
genusClostridiales_noname0.1523.9e-111.24e-10
genusCollinsella-0.1515.43e-111.71e-10
familyStreptococcaceae0.1515.73e-111.79e-10
speciesStreptococcus_mitis_oralis_pneumoniae0.156.33e-111.97e-10
familyLactobacillaceae0.156.6e-112.04e-10
speciesPrevotella_buccae0.1481.29e-103.95e-10
genusLactobacillus0.1481.34e-104.08e-10
speciesDorea_formicigenerans-0.1481.37e-104.15e-10
speciesEnterococcus_faecium0.1481.46e-104.39e-10
genusMorganella0.1471.57e-104.66e-10
speciesMorganella_morganii0.1471.57e-104.66e-10
speciesOdoribacter_splanchnicus-0.1471.91e-105.63e-10
speciesBacteroides_stercoris0.1462.2e-106.45e-10
genusSolobacterium0.1462.41e-106.98e-10
speciesSolobacterium_moorei0.1462.41e-106.98e-10
familyPeptostreptococcaceae0.1453.33e-109.58e-10
genusStreptococcus0.1444.45e-101.27e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1435.13e-101.46e-09
speciesKlebsiella_sp_MS_92_30.1426.73e-101.9e-09
genusBlautia0.1418.21e-102.31e-09
speciesRuminococcus_sp_5_1_39BFAA-0.1419.8e-102.74e-09
classEpsilonproteobacteria0.1391.59e-094.39e-09
orderCampylobacterales0.1391.59e-094.39e-09
familyCampylobacteraceae0.1391.75e-094.8e-09
genusCampylobacter0.1381.84e-095.02e-09
speciesPrevotella_stercorea0.1382.18e-095.91e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1372.88e-097.77e-09
speciesMethanobrevibacter_smithii-0.1363.52e-099.44e-09
speciesHaemophilus_parainfluenzae0.1363.74e-099.97e-09
speciesMegamonas_rupellensis0.1363.88e-091.03e-08
genusHaemophilus0.1355.22e-091.38e-08
genusPeptostreptococcus0.1345.49e-091.44e-08
familySiphoviridae-0.1346e-091.56e-08
orderPasteurellales0.1346.15e-091.58e-08
familyPasteurellaceae0.1346.15e-091.58e-08
familyPorphyromonadaceae-0.1346.15e-091.58e-08
speciesVeillonella_atypica0.1346.82e-091.74e-08
orderBacillales0.1338.4e-092.13e-08
speciesPrevotella_copri0.1329.04e-092.28e-08
genusMethanobrevibacter-0.1321.06e-082.66e-08
speciesRuminococcus_lactaris-0.1311.25e-083.12e-08
speciesAlistipes_onderdonkii-0.1311.28e-083.18e-08
speciesMegasphaera_unclassified0.1311.3e-083.21e-08
familySutterellaceae-0.1311.43e-083.52e-08
genusProteus0.131.68e-084.11e-08
speciesClostridium_bartlettii0.131.83e-084.45e-08
genusAggregatibacter0.1292.09e-085.06e-08
genusPeptostreptococcaceae_noname0.1292.35e-085.66e-08
phylumEuryarchaeota-0.1282.61e-086.25e-08
classMethanobacteria-0.1282.88e-086.8e-08
orderMethanobacteriales-0.1282.88e-086.8e-08
familyMethanobacteriaceae-0.1282.88e-086.8e-08
speciesStreptococcus_australis0.1283.01e-087.07e-08
speciesMegamonas_hypermegale0.1273.73e-088.72e-08
familyMyoviridae0.1273.78e-088.79e-08
speciesClostridium_clostridioforme0.1264.18e-089.67e-08
speciesBacteroides_intestinalis0.1238.68e-082e-07
genusFaecalibacterium-0.1238.94e-082.04e-07
speciesFaecalibacterium_prausnitzii-0.1238.94e-082.04e-07
speciesParaprevotella_xylaniphila-0.1239.43e-082.14e-07
orderBurkholderiales-0.1211.59e-073.59e-07
speciesStreptococcus_lutetiensis0.121.75e-073.93e-07
speciesLactobacillus_sanfranciscensis0.1192.35e-075.26e-07
speciesProteus_mirabilis0.1192.48e-075.52e-07
speciesLeuconostoc_lactis0.1192.56e-075.67e-07
speciesLactobacillus_fermentum0.1164.59e-071.01e-06
speciesStreptococcus_gordonii0.1164.65e-071.02e-06
speciesBlautia_hydrogenotrophica-0.1164.67e-071.02e-06
genusRuminococcus-0.1164.95e-071.08e-06
classBetaproteobacteria-0.1155.53e-071.2e-06
speciesAggregatibacter_segnis0.1147.46e-071.61e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1147.78e-071.67e-06
speciesOdoribacter_unclassified-0.1148.1e-071.73e-06
speciesPeptostreptococcus_stomatis0.1131.06e-062.25e-06
speciesParaprevotella_unclassified-0.1111.36e-062.88e-06
speciesGemella_morbillorum0.1111.65e-063.48e-06
speciesBacteroides_thetaiotaomicron0.111.68e-063.52e-06
genusParaprevotella-0.111.74e-063.63e-06
speciesBacteroides_nordii0.1083.12e-066.49e-06
speciesRoseburia_intestinalis-0.1073.31e-066.85e-06
speciesEubacterium_ventriosum-0.1064.27e-068.8e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1064.65e-069.54e-06
speciesStreptococcus_pasteurianus0.1055.32e-061.09e-05
familyPropionibacteriaceae-0.1055.49e-061.12e-05
speciesAlistipes_sp_HGB5-0.1037.82e-061.58e-05
familyClostridiales_noname0.1038.21e-061.66e-05
familyActinomycetaceae0.1038.27e-061.66e-05
speciesParaprevotella_clara-0.1011.18e-052.36e-05
speciesBacteroides_coprocola0.1011.22e-052.43e-05
speciesOlsenella_unclassified-0.1011.25e-052.48e-05
speciesEnterobacteria_phage_HK5440.11.39e-052.75e-05
speciesCampylobacter_concisus0.11.52e-052.99e-05
speciesStreptococcus_vestibularis0.0991.81e-053.54e-05
speciesRuminococcus_champanellensis-0.0991.92e-053.74e-05
speciesMegamonas_funiformis0.0982.09e-054.06e-05
genusAdlercreutzia-0.0972.54e-054.87e-05
speciesAdlercreutzia_equolifaciens-0.0972.54e-054.87e-05
genusCatenibacterium-0.0972.55e-054.87e-05
speciesCatenibacterium_mitsuokai-0.0972.55e-054.87e-05
genusActinomyces0.0972.68e-055.1e-05
speciesBacteroides_sp_3_1_190.0972.73e-055.17e-05
speciesCoprococcus_eutactus-0.0972.82e-055.32e-05
speciesRothia_mucilaginosa0.0972.87e-055.4e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0963.42e-056.41e-05
speciesBifidobacterium_catenulatum-0.0953.75e-057e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.0944.44e-058.25e-05
familyVeillonellaceae0.0944.55e-058.42e-05
orderCoriobacteriales-0.0944.6e-058.43e-05
familyCoriobacteriaceae-0.0944.6e-058.43e-05
speciesLactobacillus_amylovorus0.0944.61e-058.43e-05
speciesAcidaminococcus_intestini0.0944.69e-058.55e-05
speciesAlistipes_finegoldii-0.0935.29e-059.6e-05
familyLachnospiraceae-0.0935.71e-050.000103
genusAnaerostipes-0.0935.74e-050.000103
speciesHaemophilus_paraphrohaemolyticus0.0926.78e-050.000122
genusActinobacillus0.0927.18e-050.000128
speciesActinobacillus_unclassified0.0927.18e-050.000128
speciesBacteroides_salyersiae0.0918.2e-050.000145
speciesRuminococcus_obeum-0.0918.23e-050.000145
speciesAlistipes_indistinctus-0.0918.51e-050.00015
speciesEubacterium_limosum0.0918.74e-050.000153
speciesEggerthella_lenta0.0890.0001080.000189
genusSiphoviridae_noname-0.0890.0001140.000199
genusAcidaminococcaceae_unclassified-0.0870.0001610.000279
speciesErysipelotrichaceae_bacterium_21_3-0.0870.0001730.000299
speciesPorphyromonas_uenonis0.0870.0001750.000301
speciesLactococcus_phage_P680-0.0860.0001850.000318
speciesRoseburia_unclassified-0.0860.0001910.000327
speciesClostridium_asparagiforme0.0860.0001980.000337
speciesLactobacillus_plantarum0.0860.0002090.000355
speciesLactococcus_phage_936_sensu_lato-0.0850.0002230.000377
speciesParabacteroides_merdae-0.0850.0002330.000393
speciesCoprobacillus_sp_D60.0850.0002380.0004
speciesLactobacillus_acidophilus-0.0850.000240.000402
speciesBlautia_producta0.0850.0002430.000405
speciesLactobacillus_crispatus0.0840.0002650.00044
speciesMegasphaera_elsdenii0.0840.0002790.000462
speciesBacteroides_oleiciplenus0.0840.0002840.000469
genusTunalikevirus0.0840.0002970.000488
speciesLachnospiraceae_bacterium_5_1_57FAA0.0830.0003380.000554
familyMicrococcaceae0.0820.0003780.000617
genusRothia0.0820.0003980.000648
orderActinomycetales0.0810.0004630.000751
speciesOscillibacter_sp_KLE_1728-0.0810.000470.00076
speciesLactobacillus_vaginalis0.0810.000490.000789
genusOlsenella-0.080.0005090.000817
speciesAlistipes_sp_AP11-0.080.0005230.000837
speciesClostridium_sp_ATCC_BAA_4420.080.0005460.000871
speciesCoprobacillus_sp_29_10.080.0005760.000915
speciesParabacteroides_goldsteinii0.0790.0005920.000938
speciesDialister_invisus-0.0790.0006620.00105
speciesStreptococcus_sanguinis0.0780.0006870.00108
speciesClostridium_sp_L2_50-0.0780.0007230.00113
genusPeptoniphilus0.0780.0007250.00113
genusPhascolarctobacterium-0.0780.0007380.00115
speciesPhascolarctobacterium_succinatutens-0.0780.0007380.00115
speciesAcidaminococcus_fermentans0.0780.0007690.00119
speciesKlebsiella_phage_KP360.0770.0007970.00123
speciesBacteroides_pectinophilus-0.0770.0008160.00125
speciesEubacterium_biforme-0.0770.0008310.00127
genusMyoviridae_noname0.0770.0008840.00135
speciesMethanobrevibacter_unclassified-0.0770.0009290.00141
speciesBacteroides_dorei-0.0760.0009640.00146
speciesOscillibacter_sp_KLE_1745-0.0760.0009920.0015
speciesEubacterium_eligens-0.0760.0010.00151
speciesPropionibacterium_freudenreichii-0.0760.001010.00152
orderCaudovirales-0.0760.001070.0016
genusParvimonas0.0760.001080.00161
speciesParvimonas_unclassified0.0750.001090.00162
speciesBacteroides_finegoldii0.0750.001120.00166
genusDialister-0.0750.001140.00169
speciesBacteroides_xylanisolvens0.0750.001150.0017
speciesLactobacillus_gasseri0.0740.001380.00203
genusLambdalikevirus0.0740.001450.00213
speciesLactobacillus_oris0.0730.001530.00224
speciesHaemophilus_sputorum0.0730.001620.00236
genusRoseburia-0.0730.001630.00237
genusPorphyromonas0.0720.001930.00279
familyAcidaminococcaceae-0.0710.002190.00316
speciesLachnospiraceae_bacterium_1_1_57FAA0.070.002320.00334
speciesBilophila_unclassified0.070.002510.0036
genusBilophila0.070.002530.00362
genusLeuconostoc0.0690.002710.00386
speciesStreptococcus_mutans0.0680.003140.00446
speciesParabacteroides_sp_D13-0.0680.003170.00449
speciesBifidobacterium_animalis-0.0680.003430.00485
speciesAnaerotruncus_colihominis0.0680.003440.00485
genusParabacteroides-0.0680.00350.00492
speciesAlistipes_unclassified-0.0670.00370.00518
speciesCollinsella_tanakaei0.0670.003860.00539
speciesBifidobacterium_breve0.0670.004010.00558
speciesBifidobacterium_angulatum-0.0660.004140.00575
speciesBacteroides_barnesiae-0.0650.004910.0068
familyOxalobacteraceae-0.0650.004950.00683
speciesDesulfovibrio_piger-0.0640.005350.00736
genusOxalobacter-0.0640.005410.0074
speciesOxalobacter_formigenes-0.0640.005410.0074
speciesBilophila_wadsworthia0.0630.006150.00839
speciesAcidaminococcus_unclassified-0.0630.006520.00887
speciesSutterella_parvirubra0.0610.007960.0108
genusPropionibacterium-0.060.009930.0134
phylumViruses_noname-0.060.010.0134
classViruses_noname-0.060.010.0134
genusBifidobacterium-0.0590.01080.0144
speciesLactococcus_phage_jm2-0.0590.01080.0144
orderAeromonadales0.0590.01110.0148
speciesBacteroides_eggerthii0.0580.0120.016
speciesPorphyromonas_asaccharolytica0.0570.01310.0174
speciesBacteroides_sp_2_1_22-0.0560.0150.0198
orderBifidobacteriales-0.0560.01540.0202
familyBifidobacteriaceae-0.0560.01540.0202
speciesEubacterium_cylindroides-0.0550.01670.0218
classDeltaproteobacteria0.0550.01680.0218
orderDesulfovibrionales0.0550.01680.0218
familyDesulfovibrionaceae0.0550.01680.0218
speciesRuminococcus_bromii-0.0550.01710.0222
speciesPrevotella_bivia0.0550.01830.0237
speciesBacteroides_sp_1_1_6-0.0540.02010.0259
speciesHoldemania_filiformis-0.0540.02020.026
phylumActinobacteria-0.0520.02370.0303
classActinobacteria-0.0520.02370.0303
speciesLactococcus_phage_phi7-0.0510.02620.0334
speciesDesulfovibrio_desulfuricans-0.0510.0290.0369
speciesLactococcus_phage_bIL67-0.050.03120.0396
classErysipelotrichia0.0490.03590.0452
orderErysipelotrichales0.0490.03590.0452
familyErysipelotrichaceae0.0490.03590.0452
speciesBifidobacterium_longum-0.0470.04030.0506
familyBacteroidaceae0.0470.04090.0511
genusBacteroides0.0470.04090.0511
speciesHoldemania_sp_AP20.0460.04490.0559
speciesBacteroides_cellulosilyticus-0.0460.0490.0609
genusSutterellaceae_unclassified-0.0450.05240.0649
speciesBacteroides_coprophilus0.0450.05410.0668
genusDesulfovibrio-0.0440.05950.0733
speciesBacteroides_salanitronis-0.0430.06130.0753
speciesLactococcus_lactis-0.0420.06620.0812
speciesSubdoligranulum_sp_4_3_54A2FAA0.0420.07090.0867
speciesHoldemania_unclassified-0.0420.07270.0887
speciesLactobacillus_ruminis-0.040.08170.0994
speciesClostridium_spiroforme-0.040.08350.101
familyPrevotellaceae0.040.08580.104
speciesErysipelotrichaceae_bacterium_2_2_44A0.0390.08790.106
speciesDorea_unclassified-0.0380.09790.118
speciesStreptococcus_parasanguinis0.0370.1090.131
genusAcidaminococcus0.0360.1210.145
speciesPeptostreptococcus_anaerobius0.0360.1240.148
speciesRoseburia_inulinivorans-0.0350.1250.149
speciesParabacteroides_unclassified0.0350.1270.151
classNegativicutes0.0340.1420.168
orderSelenomonadales0.0340.1420.168
speciesCoriobacteriaceae_bacterium_phI-0.0330.1520.179
speciesBacteroides_massiliensis0.0330.1530.18
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0310.180.211
genusCoriobacteriaceae_noname-0.030.1920.225
speciesTuricibacter_unclassified-0.030.20.234
orderPseudomonadales0.0280.2220.259
phylumBacteroidetes-0.0280.2260.261
classBacteroidia-0.0280.2260.261
orderBacteroidales-0.0280.2260.261
speciesLactobacillus_casei_paracasei-0.0280.2340.27
speciesClostridium_sp_KLE_1755-0.0280.2350.271
speciesEubacterium_dolichum0.0270.2370.272
speciesBacteroides_clarus0.0270.2450.281
speciesLactobacillus_reuteri0.0260.2520.288
genusBurkholderiales_noname0.0260.2620.298
speciesBurkholderiales_bacterium_1_1_470.0260.2620.298
speciesMitsuokella_multacida-0.0260.2650.301
speciesErysipelotrichaceae_bacterium_6_1_450.0250.2720.308
speciesCollinsella_unclassified-0.0250.2740.309
familyPodoviridae0.0250.2760.311
speciesPeptostreptococcaceae_noname_unclassified-0.0250.2790.314
genusTuricibacter-0.0250.2810.315
speciesLactobacillus_delbrueckii-0.0240.3050.341
speciesBacteroides_caccae0.0240.3070.343
familyBurkholderiales_noname0.0230.310.345
speciesRuminococcus_sp_JC3040.0230.3160.351
speciesErysipelotrichaceae_bacterium_3_1_530.0230.3250.36
genusSlackia0.0210.3630.401
orderViruses_noname-0.0210.3750.414
genusHoldemania-0.020.3880.427
speciesParabacteroides_johnsonii0.020.3940.432
speciesEubacterium_sp_3_1_31-0.0190.4030.441
genusGordonibacter-0.0190.4160.453
speciesGordonibacter_pamelaeae-0.0190.4160.453
genusParasutterella0.0180.4290.465
speciesParasutterella_excrementihominis0.0180.4290.465
genusButyricicoccus0.0170.450.486
speciesButyricicoccus_pullicaecorum0.0170.450.486
speciesBacteroides_vulgatus-0.0170.470.506
genusErysipelotrichaceae_noname0.0160.4860.523
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0160.4980.534
genusMethanosphaera-0.0150.5140.549
speciesMethanosphaera_stadtmanae-0.0150.5140.549
speciesBacteroides_sp_4_3_47FAA0.0150.5190.553
speciesRuminococcus_torques0.0150.5260.559
speciesCollinsella_intestinalis0.0150.5290.561
genusClostridiaceae_noname0.0140.5420.571
genusLactococcus0.0140.5420.571
speciesClostridiaceae_bacterium_JC1180.0140.5420.571
speciesParabacteroides_sp_20_3-0.0140.5440.572
speciesBacteroides_faecis0.0140.5550.582
speciesBifidobacterium_bifidum0.0130.5690.595
genusStaphylococcus-0.0130.5760.601
speciesSlackia_piriformis-0.0120.590.615
speciesBacteroides_fluxus-0.0090.6930.72
familyViruses_noname0.0080.7380.764
genusViruses_noname0.0080.7380.764
speciesRuminococcus_callidus0.0060.780.806
speciesBacteroides_ovatus-0.0060.7880.812
speciesStreptococcus_phage_Sfi21-0.0060.8110.832
speciesEggerthella_sp_1_3_56FAA-0.0050.8130.832
speciesParabacteroides_distasonis0.0050.8130.832
familyStaphylococcaceae-0.0050.8440.862
speciesTuricibacter_sanguinis-0.0030.8880.905
genusSuccinatimonas0.0030.9050.919
speciesSuccinatimonas_hippei0.0030.9050.919
genusButyricimonas-0.0020.9220.932
speciesButyricimonas_synergistica-0.0020.9220.932
genusLachnospiraceae_noname-0.0020.9280.936
speciesOdoribacter_laneus0.0020.9350.941
speciesDialister_succinatiphilus0.0010.9590.963
familySuccinivibrionaceae0.00.9860.988
speciesLactobacillus_rhamnosus0.01.01.0
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.009107011453790.004251131439611.39919032856e-106542.14377
Liver cirrhosisChina1201140.06807850269180.01076290362276.55130935822e-06337411.3339
Crohns diseaseSpain17660.05547865035820.007100793673280.00421459878556642721.3699
Type II diabetesChina1831850.05449719510450.04185055582810.0286352221744557318.4177
Colorectal cancerAustria64350.07754284670510.01239940311170.116507771582565019.1163
Rheumatoid arthritisChina127980.0321607139590.03551553273870.4128058460481513150.4585
ObesityDenmark1691230.00588562882480.009554315900890.4982918355551926663.3521
Ulcerative colitisSpain78660.003184725589060.007100793673280.6675476032182310976.2321
Type II diabetesSweden53920.01626146317780.007965904719260.6909314885762119071.7575
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382