MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-09-15 17:58:44 PST
Job id & description: 2105, YghJ from ETEC H10407
Query type: protein
Count queries & homologs: 1, 26
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
YghJ27485CompleteK10939NOG313590ProteobacteriaEscherichia100.099.6197.63
YghJ27996CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.094.81
YghJ28086CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.094.21
YghJ27953CompleteK10939NOG305376;NOG313590ProteobacteriaEscherichia100.0100.092.11
YghJ27762CompleteK10939NOG313590ProteobacteriaEscherichia100.099.0290.92
YghJ28031CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.091.58
YghJ28486CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.090.59
YghJ27569CompleteK10939NOG313590ProteobacteriaEscherichia100.099.6190.66
YghJ27896CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.090.67
YghJ28075CompleteK10939NOG305376;NOG313590ProteobacteriaEscherichia100.0100.090.26
YghJ27827CompleteK10939NOG313590ProteobacteriaEscherichia100.099.6189.41
YghJ26012Lack 5'-endK10939NOG313590ProteobacteriaEscherichia100.098.0790.08
YghJ27690CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.088.79
YghJ27994CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.089.36
YghJ27874CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.089.55
YghJ27854CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.089.55
YghJ27698CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.088.58
YghJ28076CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.088.08
YghJ27568CompleteK10939NOG313590ProteobacteriaEscherichia100.099.6187.84
YghJ27952CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.088.82
YghJ27945CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.087.84
YghJ28085CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.087.76
YghJ27761CompleteK10939NOG313590ProteobacteriaEscherichia100.0100.087.66
YghJ27691CompleteK10939NOG313590ProteobacteriaEscherichia100.099.6187.51
YghJ33571CompleteK10939NOG305376;NOG313590ProteobacteriaEscherichia93.4898.3492.05
YghJ31238CompleteK10939NOG313590ProteobacteriaEscherichia97.1100.086.87
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.7730.00.0
orderEnterobacteriales0.8370.00.0
familyEnterobacteriaceae0.8370.00.0
genusEscherichia0.8990.00.0
speciesEscherichia_coli0.9050.00.0
phylumProteobacteria0.5822.76e-1702.17e-168
speciesEscherichia_unclassified0.5141.88e-1261.27e-124
genusPantoea0.4014.54e-732.38e-71
speciesPantoea_unclassified0.4014.54e-732.38e-71
genusKlebsiella0.3871.07e-675.05e-66
speciesKlebsiella_pneumoniae0.3745.2e-632.23e-61
speciesRuminococcus_gnavus0.3511.89e-557.43e-54
familyFusobacteriaceae0.3011.51e-405.48e-39
genusCoprobacillus0.32.59e-408.73e-39
speciesClostridium_bolteae0.34.06e-401.28e-38
speciesClostridium_nexile0.2988.69e-402.56e-38
speciesClostridium_hathewayi0.2962.98e-398.27e-38
genusFusobacterium0.2957.8e-392.05e-37
phylumFusobacteria0.2941.46e-383.28e-37
classFusobacteriia0.2941.46e-383.28e-37
orderFusobacteriales0.2941.46e-383.28e-37
speciesCoprobacillus_unclassified0.2844.03e-368.65e-35
speciesClostridium_ramosum0.2813.75e-357.7e-34
speciesSubdoligranulum_unclassified-0.2531.01e-281.99e-27
genusSubdoligranulum-0.2455.28e-279.97e-26
familyClostridiaceae0.2448.15e-271.48e-25
speciesEnterobacter_cloacae0.2431.43e-262.5e-25
genusEnterobacter0.2431.91e-263.22e-25
genusClostridium0.246.26e-261.01e-24
speciesBacteroides_fragilis0.246.42e-261.01e-24
speciesClostridium_symbiosum0.2314.35e-246.62e-23
genusCitrobacter0.2256.64e-239.79e-22
genusCoprococcus-0.2222.14e-223.06e-21
speciesEubacterium_siraeum-0.225.45e-227.57e-21
speciesCitrobacter_unclassified0.2198.36e-221.13e-20
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2181.51e-211.98e-20
speciesFusobacterium_ulcerans0.2172.38e-213.04e-20
genusButyrivibrio-0.2155.74e-217.13e-20
speciesCitrobacter_freundii0.2131.17e-201.42e-19
speciesAnaerotruncus_unclassified-0.2131.24e-201.46e-19
genusBarnesiella-0.2131.42e-201.6e-19
speciesBarnesiella_intestinihominis-0.2131.42e-201.6e-19
genusEubacterium-0.215.24e-205.75e-19
familyEubacteriaceae-0.215.38e-205.77e-19
speciesEubacterium_rectale-0.2096.23e-206.53e-19
speciesEggerthella_unclassified0.2071.68e-191.72e-18
speciesClostridiales_bacterium_1_7_47FAA0.2071.72e-191.73e-18
genusEnterococcus0.2062.69e-192.65e-18
familyEnterococcaceae0.2045.62e-195.41e-18
speciesEubacterium_ramulus-0.2011.53e-181.44e-17
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1993.33e-183.08e-17
genusEggerthella0.1979.17e-188.32e-17
familyRuminococcaceae-0.1961.18e-171.05e-16
speciesSutterella_wadsworthensis-0.1951.46e-171.28e-16
genusFlavonifractor0.1916.72e-175.66e-16
speciesFlavonifractor_plautii0.1916.72e-175.66e-16
classClostridia-0.191.08e-168.79e-16
orderClostridiales-0.191.08e-168.79e-16
speciesBifidobacterium_adolescentis-0.191.18e-169.44e-16
genusSutterella-0.1873.6e-162.83e-15
speciesCoprococcus_comes-0.1874.08e-163.16e-15
speciesClostridium_citroniae0.1831.68e-151.28e-14
genusBlautia0.1812.84e-152.13e-14
genusWeissella0.183.77e-152.78e-14
speciesMitsuokella_unclassified-0.1795.78e-154.2e-14
genusPseudoflavonifractor-0.1796.27e-154.42e-14
speciesPseudoflavonifractor_capillosus-0.1796.27e-154.42e-14
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1796.93e-154.81e-14
speciesFusobacterium_varium0.1771.41e-149.65e-14
genusMegasphaera0.1761.64e-141.11e-13
speciesButyrivibrio_unclassified-0.1761.87e-141.24e-13
speciesFusobacterium_nucleatum0.1761.89e-141.24e-13
familyBacteroidales_noname-0.1726.29e-143.96e-13
genusBacteroidales_noname-0.1726.29e-143.96e-13
speciesBacteroidales_bacterium_ph8-0.1726.29e-143.96e-13
speciesAlistipes_putredinis-0.1727e-144.35e-13
familyRikenellaceae-0.1718.45e-145.11e-13
genusAlistipes-0.1718.45e-145.11e-13
speciesKlebsiella_unclassified0.1691.7e-131.02e-12
genusMitsuokella-0.1692.08e-131.23e-12
speciesLactobacillus_salivarius0.1665.92e-133.45e-12
speciesClostridium_clostridioforme0.1657.8e-134.49e-12
speciesLachnospiraceae_bacterium_6_1_63FAA0.1621.75e-129.95e-12
speciesBacteroides_uniformis-0.1621.96e-121.1e-11
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1612.67e-121.48e-11
speciesEnterococcus_faecalis0.163.29e-121.81e-11
speciesClostridium_perfringens0.1594.07e-122.21e-11
speciesMegasphaera_micronuciformis0.1595.06e-122.71e-11
speciesAlistipes_shahii-0.1595.15e-122.73e-11
speciesDorea_longicatena-0.1595.41e-122.84e-11
familyLeuconostocaceae0.1579.77e-125.07e-11
genusClostridiales_noname0.1561.02e-115.23e-11
speciesRoseburia_hominis-0.1551.4e-117.11e-11
speciesStreptococcus_anginosus0.1551.46e-117.33e-11
speciesCoprococcus_catus-0.1551.55e-117.7e-11
speciesAnaerostipes_unclassified0.1551.7e-118.36e-11
genusCoprobacter-0.1542.14e-111.03e-10
speciesCoprobacter_fastidiosus-0.1542.14e-111.03e-10
speciesVeillonella_parvula0.1542.17e-111.03e-10
speciesKlebsiella_oxytoca0.1542.3e-111.09e-10
speciesWeissella_confusa0.1532.79e-111.3e-10
speciesClostridium_leptum-0.1533.09e-111.43e-10
phylumFirmicutes-0.1523.63e-111.66e-10
speciesLachnospiraceae_bacterium_2_1_58FAA0.1523.87e-111.76e-10
speciesFusobacterium_mortiferum0.1514.84e-112.18e-10
genusFaecalibacterium-0.157.69e-113.39e-10
speciesFaecalibacterium_prausnitzii-0.157.69e-113.39e-10
genusMegamonas0.1481.3e-105.63e-10
speciesMegamonas_unclassified0.1481.3e-105.63e-10
genusDorea-0.1462.03e-108.71e-10
classBacilli0.1443.7e-101.57e-09
genusOdoribacter-0.1435.11e-102.15e-09
orderLactobacillales0.1435.63e-102.35e-09
speciesWeissella_cibaria0.1426.17e-102.55e-09
speciesC2likevirus_unclassified-0.1426.55e-102.69e-09
genusRuminococcaceae_noname-0.1427.47e-103.01e-09
speciesRuminococcaceae_bacterium_D16-0.1427.47e-103.01e-09
speciesStreptococcus_infantarius0.1411.01e-094.04e-09
genusC2likevirus-0.141.21e-094.8e-09
speciesCoprococcus_sp_ART55_1-0.1391.58e-096.2e-09
familyClostridiales_noname0.1391.59e-096.2e-09
genusVeillonella0.1391.63e-096.31e-09
speciesOdoribacter_splanchnicus-0.1382.21e-098.48e-09
familySutterellaceae-0.1372.47e-099.4e-09
speciesAlistipes_senegalensis-0.1372.68e-091.01e-08
phylumSynergistetes0.1337.57e-092.77e-08
classSynergistia0.1337.57e-092.77e-08
orderSynergistales0.1337.57e-092.77e-08
familySynergistaceae0.1337.57e-092.77e-08
genusMorganella0.1328.94e-093.22e-08
speciesMorganella_morganii0.1328.94e-093.22e-08
speciesLactococcus_garvieae0.1321.07e-083.83e-08
speciesStreptococcus_thermophilus-0.1321.11e-083.94e-08
speciesOscillibacter_unclassified-0.1311.39e-084.9e-08
speciesDorea_formicigenerans-0.1311.46e-085.1e-08
speciesRuminococcus_lactaris-0.131.66e-085.76e-08
genusPyramidobacter0.1292.01e-086.87e-08
speciesPyramidobacter_piscolens0.1292.01e-086.87e-08
familyPeptostreptococcaceae0.1292.12e-087.2e-08
speciesEubacterium_hallii-0.1282.69e-089.07e-08
speciesLactobacillus_mucosae0.1282.89e-089.67e-08
speciesCollinsella_aerofaciens-0.1283.13e-081.04e-07
speciesEnterococcus_faecium0.1273.71e-081.22e-07
genusPeptostreptococcus0.1264.5e-081.47e-07
speciesStreptococcus_pasteurianus0.1264.88e-081.59e-07
orderBurkholderiales-0.1255.32e-081.72e-07
speciesParaprevotella_xylaniphila-0.1255.77e-081.85e-07
speciesStreptococcus_lutetiensis0.1256.11e-081.95e-07
speciesBifidobacterium_pseudocatenulatum0.1246.9e-082.19e-07
speciesAnaerostipes_hadrus-0.1247.56e-082.38e-07
familyBacillales_noname0.1247.97e-082.47e-07
genusGemella0.1247.97e-082.47e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.1239.16e-082.83e-07
speciesPrevotella_stercorea0.1221.2e-073.68e-07
familyOscillospiraceae-0.1221.3e-073.93e-07
genusOscillibacter-0.1221.3e-073.93e-07
classBetaproteobacteria-0.1211.37e-074.12e-07
genusPrevotella0.1211.53e-074.57e-07
speciesEubacterium_eligens-0.1211.6e-074.75e-07
genusAnaerotruncus-0.1192.24e-076.61e-07
speciesClostridium_bartlettii0.1192.55e-077.48e-07
genusSolobacterium0.1173.54e-071.03e-06
speciesSolobacterium_moorei0.1173.54e-071.03e-06
speciesKlebsiella_sp_MS_92_30.1164.95e-071.42e-06
genusCollinsella-0.1155.82e-071.66e-06
phylumVerrucomicrobia-0.1146.92e-071.9e-06
classVerrucomicrobiae-0.1146.92e-071.9e-06
orderVerrucomicrobiales-0.1146.92e-071.9e-06
familyVerrucomicrobiaceae-0.1146.92e-071.9e-06
genusAkkermansia-0.1146.92e-071.9e-06
speciesAkkermansia_muciniphila-0.1146.92e-071.9e-06
speciesPrevotella_buccae0.1146.93e-071.9e-06
genusPeptostreptococcaceae_noname0.1147.24e-071.98e-06
speciesBlautia_producta0.1138.64e-072.34e-06
speciesRuminococcus_sp_5_1_39BFAA-0.1139.67e-072.61e-06
speciesParaprevotella_unclassified-0.1139.84e-072.63e-06
genusParaprevotella-0.1139.87e-072.63e-06
familyLactobacillaceae0.1131.02e-062.7e-06
speciesEnterobacter_aerogenes0.1121.27e-063.35e-06
speciesAlistipes_onderdonkii-0.1121.3e-063.41e-06
classEpsilonproteobacteria0.111.89e-064.9e-06
orderCampylobacterales0.111.89e-064.9e-06
speciesButyrivibrio_crossotus-0.111.91e-064.92e-06
speciesStreptococcus_salivarius0.111.93e-064.92e-06
speciesRoseburia_intestinalis-0.111.93e-064.92e-06
speciesBacteroides_stercoris0.112.02e-065.12e-06
speciesEubacterium_ventriosum-0.112.03e-065.12e-06
genusLactobacillus0.1092.29e-065.75e-06
speciesMegasphaera_unclassified0.1082.61e-066.52e-06
familyCampylobacteraceae0.1082.76e-066.86e-06
familyPorphyromonadaceae-0.1082.99e-067.39e-06
speciesEnterobacteria_phage_HK5440.1083.05e-067.5e-06
genusCampylobacter0.1083.08e-067.53e-06
genusProteus0.1073.2e-067.79e-06
speciesLachnospiraceae_bacterium_1_4_56FAA0.1073.64e-068.81e-06
speciesVeillonella_dispar0.1063.92e-069.44e-06
familyActinomycetaceae0.1063.94e-069.44e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1054.94e-061.18e-05
speciesMegamonas_hypermegale0.1046.82e-061.62e-05
speciesMegamonas_rupellensis0.1047.16e-061.69e-05
speciesStreptococcus_mitis_oralis_pneumoniae0.1037.39e-061.74e-05
speciesParaprevotella_clara-0.1038.59e-062.01e-05
orderBacillales0.1029.85e-062.29e-05
speciesVeillonella_unclassified0.1021.01e-052.34e-05
speciesBacteroides_intestinalis0.1011.15e-052.65e-05
speciesAcidaminococcus_intestini0.1011.17e-052.68e-05
speciesParabacteroides_merdae-0.1011.27e-052.9e-05
genusActinomyces0.11.4e-053.18e-05
familySiphoviridae-0.0991.68e-053.79e-05
speciesLactobacillus_fermentum0.0991.7e-053.82e-05
speciesGemella_morbillorum0.0981.99e-054.45e-05
genusPeptoniphilus0.0982.09e-054.65e-05
familyStreptococcaceae0.0972.56e-055.67e-05
speciesPeptostreptococcus_stomatis0.0972.78e-056.13e-05
speciesBacteroides_thetaiotaomicron0.0963.04e-056.66e-05
speciesBacteroides_plebeius0.0963.05e-056.66e-05
speciesBifidobacterium_dentium0.0963.23e-057.03e-05
genusRoseburia-0.0963.32e-057.19e-05
genusStreptococcus0.0953.98e-058.58e-05
speciesAlistipes_sp_HGB5-0.0945e-050.000107
speciesPrevotella_bivia0.0935.29e-050.000113
speciesBifidobacterium_catenulatum-0.0935.3e-050.000113
speciesProteus_mirabilis0.0935.76e-050.000122
familyMyoviridae0.0936.07e-050.000128
speciesVeillonella_atypica0.0926.82e-050.000142
speciesLachnospiraceae_bacterium_5_1_57FAA0.0926.83e-050.000142
speciesEggerthella_lenta0.0926.83e-050.000142
speciesEubacterium_biforme-0.0918.03e-050.000166
speciesBlautia_hydrogenotrophica-0.0918.14e-050.000168
speciesPrevotella_copri0.099.52e-050.000195
speciesCoprococcus_eutactus-0.090.0001020.000208
speciesBacteroides_nordii0.090.0001050.000214
genusLambdalikevirus0.0890.0001170.000237
speciesAnaerotruncus_colihominis0.0890.0001230.000248
speciesPorphyromonas_uenonis0.0880.0001340.000268
speciesLactobacillus_amylovorus0.0880.0001340.000268
speciesMethanobrevibacter_smithii-0.0870.0001780.000354
genusPorphyromonas0.0860.0001890.000375
speciesAlistipes_finegoldii-0.0850.0002160.000427
speciesBifidobacterium_angulatum-0.0850.0002190.000431
genusAdlercreutzia-0.0850.0002430.000474
speciesAdlercreutzia_equolifaciens-0.0850.0002430.000474
phylumEuryarchaeota-0.0850.0002440.000474
speciesOdoribacter_unclassified-0.0850.0002470.000478
speciesClostridium_sp_L2_50-0.0840.0002710.000522
speciesPorphyromonas_asaccharolytica0.0830.0003530.000677
genusMethanobrevibacter-0.0820.0003620.000692
speciesErysipelotrichaceae_bacterium_2_2_44A0.0820.0004090.000778
genusRuminococcus-0.0810.0004260.000808
speciesStreptococcus_australis0.0810.0004880.000921
classMethanobacteria-0.080.0005020.000937
orderMethanobacteriales-0.080.0005020.000937
familyMethanobacteriaceae-0.080.0005020.000937
speciesClostridium_asparagiforme0.080.0005710.00106
speciesBacteroides_sp_3_1_190.0790.0005920.0011
speciesParabacteroides_goldsteinii0.0780.0007030.0013
speciesAggregatibacter_segnis0.0770.0008810.00162
speciesLactobacillus_crispatus0.0760.001030.00188
genusAcidaminococcaceae_unclassified-0.0750.00110.002
genusCatenibacterium-0.0750.001120.00203
speciesCatenibacterium_mitsuokai-0.0750.001120.00203
familyLachnospiraceae-0.0750.001130.00204
speciesOlsenella_unclassified-0.0750.001180.00212
genusSutterellaceae_unclassified-0.0750.001250.00223
genusAggregatibacter0.0740.001320.00235
speciesRuminococcus_champanellensis-0.0740.001440.00256
speciesBacteroides_salyersiae0.0730.001480.00262
speciesBifidobacterium_breve0.0730.001510.00266
speciesStreptococcus_gordonii0.0730.001640.00288
speciesClostridium_sp_ATCC_BAA_4420.0720.001710.00299
genusBilophila0.0710.002050.00357
speciesLactobacillus_sanfranciscensis0.0710.00210.00364
speciesBilophila_unclassified0.0710.002110.00365
classErysipelotrichia0.0710.002140.00366
orderErysipelotrichales0.0710.002140.00366
familyErysipelotrichaceae0.0710.002140.00366
familyPropionibacteriaceae-0.0710.002210.00377
speciesEubacterium_limosum0.070.002340.00397
speciesLactobacillus_plantarum0.070.002520.00426
speciesCoprobacillus_sp_29_10.070.00260.00438
speciesRoseburia_inulinivorans-0.0690.002640.00443
speciesRuminococcus_obeum-0.0690.002990.005
speciesSubdoligranulum_sp_4_3_54A2FAA0.0680.003140.00524
speciesLactobacillus_acidophilus-0.0680.00320.00532
speciesCampylobacter_concisus0.0680.003230.00535
genusPhascolarctobacterium-0.0680.00340.00559
speciesPhascolarctobacterium_succinatutens-0.0680.00340.00559
classDeltaproteobacteria0.0680.003490.00568
orderDesulfovibrionales0.0680.003490.00568
familyDesulfovibrionaceae0.0680.003490.00568
genusParvimonas0.0670.003610.00586
speciesParvimonas_unclassified0.0670.003690.00596
speciesRoseburia_unclassified-0.0650.004760.00767
speciesRuminococcus_torques0.0650.004790.00769
speciesBacteroides_coprocola0.0640.005390.00862
familyVeillonellaceae0.0630.006080.00969
orderCaudovirales-0.0630.00610.00969
speciesBacteroides_pectinophilus-0.0630.006180.00979
speciesLactobacillus_vaginalis0.0610.007960.0126
speciesParabacteroides_sp_D13-0.0610.00880.0138
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0610.008860.0139
speciesBifidobacterium_animalis-0.060.00940.0147
speciesAcidaminococcus_fermentans0.060.00990.0154
speciesAlistipes_indistinctus-0.0590.01040.0161
speciesStreptococcus_vestibularis0.0590.01050.0162
familyAcidaminococcaceae-0.0590.01090.0168
speciesMegasphaera_elsdenii0.0580.01220.0188
orderActinomycetales0.0580.01230.0188
speciesLactococcus_phage_936_sensu_lato-0.0570.01310.02
speciesBacteroides_sp_1_1_6-0.0570.0140.0213
speciesEubacterium_dolichum0.0560.01520.0231
orderCoriobacteriales-0.0560.01540.0232
familyCoriobacteriaceae-0.0560.01540.0232
speciesBacteroides_xylanisolvens0.0560.01580.0238
speciesErysipelotrichaceae_bacterium_6_1_450.0560.01620.0243
speciesCoprobacillus_sp_D60.0550.01770.0264
genusOlsenella-0.0540.01880.028
genusLeuconostoc0.0540.01890.0281
speciesLeuconostoc_lactis0.0540.02050.0303
speciesPropionibacterium_freudenreichii-0.0530.02080.0307
familyBacteroidaceae0.0530.02140.0314
genusBacteroides0.0530.02140.0314
speciesHaemophilus_paraphrohaemolyticus0.0530.02150.0314
speciesMegamonas_funiformis0.0530.02220.0323
speciesLactobacillus_ruminis-0.0530.02240.0325
speciesRothia_mucilaginosa0.0520.02330.0337
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0520.02420.0349
speciesBilophila_wadsworthia0.0520.02550.0367
genusParabacteroides-0.0520.02570.0368
phylumViruses_noname-0.0520.02580.0368
classViruses_noname-0.0520.02580.0368
speciesBacteroides_oleiciplenus0.0510.02670.038
speciesBacteroides_barnesiae-0.0510.02720.0386
speciesStreptococcus_sanguinis0.0490.03320.0469
speciesDesulfovibrio_piger-0.0490.03430.0483
speciesHaemophilus_parainfluenzae0.0490.03540.0497
speciesStreptococcus_mutans0.0480.03660.0513
genusHaemophilus0.0480.03860.0539
genusAcidaminococcus0.0470.04070.0567
orderPasteurellales0.0470.04170.0577
familyPasteurellaceae0.0470.04170.0577
genusSiphoviridae_noname-0.0470.0430.0593
speciesRuminococcus_bromii-0.0460.04670.0643
genusDialister-0.0460.04710.0646
speciesParabacteroides_unclassified0.0450.05370.0735
speciesLachnospiraceae_bacterium_1_1_57FAA0.0450.05410.0738
speciesLactococcus_phage_bIL67-0.0450.05440.074
familyMicrococcaceae0.0440.05680.077
speciesLactococcus_phage_P680-0.0440.05850.0791
genusRothia0.0440.05940.0801
genusErysipelotrichaceae_noname0.0430.06020.0804
speciesPeptostreptococcus_anaerobius0.0430.06020.0804
genusOxalobacter-0.0430.06030.0804
speciesOxalobacter_formigenes-0.0430.06030.0804
familyOxalobacteraceae-0.0430.06240.083
orderAeromonadales0.0430.06370.0844
speciesMethanobrevibacter_unclassified-0.0430.06380.0844
speciesDialister_invisus-0.0420.06990.092
genusAnaerostipes-0.0420.070.092
speciesLactobacillus_gasseri0.0410.07660.1
speciesLactobacillus_oris0.0410.07670.1
speciesOscillibacter_sp_KLE_1728-0.0410.07680.1
genusMyoviridae_noname0.0410.07790.101
speciesBacteroides_cellulosilyticus-0.040.08330.108
speciesHoldemania_filiformis-0.040.08380.108
speciesAlistipes_sp_AP11-0.040.08380.108
speciesCollinsella_tanakaei0.0390.09010.116
speciesPeptostreptococcaceae_noname_unclassified-0.0380.09820.126
genusPropionibacterium-0.0380.09890.127
speciesBacteroides_sp_2_1_22-0.0380.1010.129
genusBifidobacterium-0.0380.1050.134
speciesBacteroides_dorei-0.0370.1090.138
speciesLactococcus_lactis-0.0360.1180.149
speciesAcidaminococcus_unclassified-0.0360.1230.155
speciesBacteroides_eggerthii0.0350.1310.165
speciesLactococcus_phage_phi7-0.0350.1320.165
speciesParabacteroides_johnsonii0.0350.1320.165
orderBifidobacteriales-0.0340.1370.171
familyBifidobacteriaceae-0.0340.1370.171
speciesOscillibacter_sp_KLE_1745-0.0340.1410.175
genusClostridiaceae_noname0.0340.1460.18
speciesClostridiaceae_bacterium_JC1180.0340.1460.18
speciesTuricibacter_unclassified-0.0330.1490.184
speciesAlistipes_unclassified-0.0330.1560.192
speciesSutterella_parvirubra0.0330.1580.194
speciesBacteroides_vulgatus-0.0320.1650.202
speciesErysipelotrichaceae_bacterium_21_3-0.0320.1730.211
phylumBacteroidetes-0.0310.1790.218
classBacteroidia-0.0310.180.218
orderBacteroidales-0.0310.180.218
speciesLactococcus_phage_jm2-0.030.1880.227
genusSlackia0.030.1960.235
speciesClostridium_spiroforme-0.030.1960.235
genusTuricibacter-0.030.1990.238
speciesBacteroides_coprophilus0.0290.2020.241
speciesOdoribacter_laneus0.0290.2110.251
genusLachnospiraceae_noname0.0290.2130.253
speciesEggerthella_sp_1_3_56FAA-0.0280.2180.259
genusBurkholderiales_noname0.0280.2220.262
speciesBurkholderiales_bacterium_1_1_470.0280.2220.262
speciesBacteroides_finegoldii0.0270.2350.276
speciesHaemophilus_sputorum0.0270.2360.276
speciesBacteroides_clarus0.0270.2360.276
genusButyricicoccus0.0270.2390.279
speciesButyricicoccus_pullicaecorum0.0270.2390.279
speciesKlebsiella_phage_KP36-0.0260.2640.307
familyBurkholderiales_noname0.0260.2690.312
speciesDorea_unclassified-0.0250.2780.322
phylumActinobacteria-0.0250.2850.328
classActinobacteria-0.0250.2850.328
classNegativicutes0.0250.2890.331
orderSelenomonadales0.0250.2890.331
speciesMitsuokella_multacida-0.0240.2980.341
speciesHoldemania_unclassified-0.0230.3180.362
genusActinobacillus0.0230.3190.362
speciesActinobacillus_unclassified0.0230.3190.362
genusGordonibacter-0.0220.3430.387
speciesGordonibacter_pamelaeae-0.0220.3430.387
speciesRuminococcus_sp_JC3040.0210.3640.41
speciesBifidobacterium_longum-0.0210.3650.41
speciesCoriobacteriaceae_bacterium_phI-0.0210.370.415
speciesEubacterium_cylindroides-0.0210.3740.418
speciesDesulfovibrio_desulfuricans-0.020.3780.422
genusParasutterella0.0190.40.444
speciesParasutterella_excrementihominis0.0190.40.444
speciesHoldemania_sp_AP20.0190.4140.459
genusStaphylococcus-0.0190.4220.466
genusCoriobacteriaceae_noname-0.0180.4390.484
genusHoldemania-0.0170.460.506
speciesParabacteroides_sp_20_3-0.0170.4750.521
speciesClostridium_sp_KLE_1755-0.0160.4830.527
genusButyricimonas-0.0160.4840.527
speciesButyricimonas_synergistica-0.0160.4840.527
genusTunalikevirus-0.0160.4850.527
genusDesulfovibrio-0.0160.5010.544
speciesLactobacillus_reuteri0.0150.5070.549
familySuccinivibrionaceae-0.0150.5280.57
speciesDialister_succinatiphilus-0.0140.5460.588
speciesCollinsella_unclassified-0.0130.5710.614
speciesTuricibacter_sanguinis-0.0130.5810.623
speciesEubacterium_sp_3_1_310.0130.5820.623
orderPseudomonadales0.0120.5950.635
familyStaphylococcaceae-0.0110.6220.663
speciesErysipelotrichaceae_bacterium_3_1_530.010.6530.694
speciesBacteroides_salanitronis-0.010.6590.699
orderViruses_noname-0.010.6610.7
speciesCollinsella_intestinalis0.010.6710.708
familyPrevotellaceae0.010.6720.708
familyPodoviridae0.0090.6820.716
genusSuccinatimonas-0.0090.6840.716
speciesSuccinatimonas_hippei-0.0090.6840.716
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0090.690.721
speciesBifidobacterium_bifidum-0.0080.7350.766
speciesStreptococcus_phage_Sfi21-0.0080.7380.767
speciesBacteroides_ovatus-0.0080.740.768
speciesRuminococcus_callidus-0.0070.7520.778
genusMethanosphaera-0.0070.7670.79
speciesMethanosphaera_stadtmanae-0.0070.7670.79
speciesBacteroides_faecis-0.0070.7680.79
speciesBacteroides_massiliensis0.0070.770.79
speciesLactobacillus_rhamnosus-0.0070.7760.795
speciesBacteroides_fluxus0.0050.8230.841
speciesBacteroides_caccae0.0040.8490.866
speciesBacteroides_sp_4_3_47FAA0.0040.8650.88
speciesSlackia_piriformis0.0040.8780.891
speciesLactobacillus_delbrueckii-0.0030.90.912
speciesLactobacillus_casei_paracasei0.0020.9450.955
familyViruses_noname-0.0010.9540.96
genusViruses_noname-0.0010.9540.96
speciesStreptococcus_parasanguinis0.0010.9750.977
genusLactococcus0.0010.9760.977
speciesParabacteroides_distasonis-0.0010.9770.977
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.009106152907930.002794403309917.78296357706e-133461.13417
Crohns diseaseSpain17660.0191670280050.004321199358260.000600946453898355411.8171
Liver cirrhosisChina1201140.02028962279520.004721320375590.03428559185511349445.329
Colorectal cancerAustria64350.04499296752620.001763150268480.0540210801725304210.2923
Type II diabetesChina1831850.02069983698370.01229267662250.0759081614353842427.8397
ObesityDenmark1691230.004258583809440.002688008784480.3180640953971455447.8577
Type II diabetesSweden53920.0050382511070.00867071888170.3744174216951230441.6661
Rheumatoid arthritisChina127980.006577081539390.005588805064590.6186349871892038067.9628
Ulcerative colitisSpain78660.001417685608310.004321199358260.961833732782953397.4236
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382