MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-09-15 20:38:44 PST
Job id & description: 2107, Serine protease EatA
Query type: protein
Count queries & homologs: 1, 20
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
CBJ04449.140484CompleteK12684COG3468ProteobacteriaEscherichia100.0100.096.86
CBJ04449.141180CompleteK12684COG3468ProteobacteriaEscherichia100.0100.075.15
CBJ04449.141117CompleteK12684COG3468ProteobacteriaShigella100.0100.074.34
CBJ04449.146928CompleteK12684COG3468ProteobacteriaEscherichia96.5599.7775.85
CBJ04449.147066CompleteK12684COG3468ProteobacteriaEscherichia96.5599.8575.02
CBJ04449.140264CompleteK12684COG3468ProteobacteriaShigella100.0100.052.46
CBJ04449.141745CompleteK12684COG3468ProteobacteriaEscherichia100.0100.052.43
CBJ04449.138906CompleteK12684COG3468ProteobacteriaEscherichia100.098.2750.65
CBJ04449.141247CompleteK12684COG3468ProteobacteriaEscherichia100.0100.050.4
CBJ04449.139838CompleteK12684COG3468ProteobacteriaEscherichia100.0100.045.49
CBJ04449.138710CompleteK12684COG3468unknownunknown100.098.9242.48
CBJ04449.139894CompleteK12684COG3468ProteobacteriaEscherichia100.0100.043.27
CBJ04449.146033CompleteK12684COG3468unknownunknown96.1199.443.57
CBJ04449.148370CompleteK12684COG3468unknownunknown100.0100.038.18
CBJ04449.146804CompleteK12684COG3468ProteobacteriaEscherichia100.0100.037.31
CBJ04449.156342CompleteK12684COG3468ProteobacteriaEscherichia95.2399.3638.86
CBJ04449.151214CompleteK12684COG3468ProteobacteriaShigella100.0100.038.03
CBJ04449.148263CompleteK12684COG3468ProteobacteriaEscherichia100.0100.036.8
CBJ04449.193637Lack 3'-endK12684COG3468unknownunknown85.41100.041.19
CBJ04449.149387CompleteK12684COG3468ProteobacteriaEscherichia100.0100.036.86
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.5732.22e-1631.05e-160
genusEscherichia0.5685.74e-1601.35e-157
orderEnterobacteriales0.5149.35e-1271.1e-124
familyEnterobacteriaceae0.5149.35e-1271.1e-124
classGammaproteobacteria0.469.25e-998.73e-97
phylumProteobacteria0.3444.74e-533.73e-51
speciesEscherichia_unclassified0.3283.76e-482.54e-46
speciesClostridium_hathewayi0.246.44e-263.8e-24
genusKlebsiella0.2357.9e-254.14e-23
speciesClostridium_nexile0.2291.23e-235.81e-22
speciesKlebsiella_pneumoniae0.2191.03e-214.42e-20
genusPantoea0.2088.65e-203.14e-18
speciesPantoea_unclassified0.2088.65e-203.14e-18
familyFusobacteriaceae0.1933.19e-171.08e-15
genusFusobacterium0.1919.53e-173e-15
speciesEnterobacter_cloacae0.191.15e-163.39e-15
speciesBacteroides_fragilis0.1891.45e-164.03e-15
phylumFusobacteria0.1882.82e-166.66e-15
classFusobacteriia0.1882.82e-166.66e-15
orderFusobacteriales0.1882.82e-166.66e-15
genusEnterobacter0.1857.81e-161.76e-14
genusCoprobacillus0.1841.07e-152.3e-14
speciesClostridium_symbiosum0.1812.74e-155.62e-14
speciesClostridium_bolteae0.184.2e-158.26e-14
genusCitrobacter0.1771.14e-142.15e-13
speciesRuminococcus_gnavus0.1771.25e-142.27e-13
familyClostridiaceae0.1735.28e-149.23e-13
genusClostridium0.171.22e-132.06e-12
genusFlavonifractor0.1691.9e-132.97e-12
speciesFlavonifractor_plautii0.1691.9e-132.97e-12
speciesCitrobacter_freundii0.1691.95e-132.97e-12
genusWeissella0.1631.55e-122.29e-11
speciesCitrobacter_unclassified0.1612.75e-123.93e-11
speciesCoprobacillus_unclassified0.1481.29e-101.79e-09
speciesEggerthella_unclassified0.1461.99e-102.68e-09
genusMegasphaera0.1453.21e-104.21e-09
speciesKlebsiella_oxytoca0.1444.13e-105.27e-09
speciesWeissella_cibaria0.141.21e-091.5e-08
genusEnterococcus0.1391.42e-091.72e-08
familyEnterococcaceae0.1391.7e-091.98e-08
speciesClostridiales_bacterium_1_7_47FAA0.1391.72e-091.98e-08
speciesClostridium_citroniae0.1391.76e-091.98e-08
speciesClostridium_ramosum0.1363.91e-094.29e-08
genusEggerthella0.1354.43e-094.73e-08
speciesFusobacterium_nucleatum0.1354.51e-094.73e-08
speciesLachnospiraceae_bacterium_6_1_63FAA0.1354.71e-094.83e-08
speciesWeissella_confusa0.1337.68e-097.71e-08
speciesClostridium_clostridioforme0.1292.19e-082.15e-07
genusEubacterium-0.1282.58e-082.48e-07
familyEubacteriaceae-0.1282.63e-082.48e-07
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1283.04e-082.78e-07
phylumSynergistetes0.1273.24e-082.78e-07
classSynergistia0.1273.24e-082.78e-07
orderSynergistales0.1273.24e-082.78e-07
familySynergistaceae0.1273.24e-082.78e-07
speciesEubacterium_siraeum-0.1264.51e-083.8e-07
genusPyramidobacter0.1264.77e-083.88e-07
speciesPyramidobacter_piscolens0.1264.77e-083.88e-07
genusMorganella0.1256.48e-085.1e-07
speciesMorganella_morganii0.1256.48e-085.1e-07
genusBilophila0.1239.98e-087.72e-07
familyLeuconostocaceae0.1221.25e-079.52e-07
speciesBilophila_unclassified0.1221.28e-079.59e-07
speciesKlebsiella_unclassified0.1192.36e-071.74e-06
speciesMegasphaera_micronuciformis0.1192.46e-071.79e-06
genusButyrivibrio-0.1192.64e-071.89e-06
speciesFusobacterium_mortiferum0.1183.09e-072.18e-06
familyClostridiales_noname0.1164.64e-073.22e-06
speciesFusobacterium_ulcerans0.1165.46e-073.73e-06
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1155.64e-073.8e-06
speciesLactobacillus_salivarius0.1148.45e-075.62e-06
speciesEubacterium_rectale-0.1139.49e-076.22e-06
speciesClostridium_perfringens0.1139.97e-076.45e-06
genusBlautia0.1131.04e-066.63e-06
speciesStreptococcus_anginosus0.1121.18e-067.43e-06
speciesSutterella_wadsworthensis-0.1121.29e-068.01e-06
familyClostridiales_Family_XI_Incertae_Sedis0.111.79e-061.1e-05
speciesStreptococcus_lutetiensis0.111.88e-061.14e-05
classDeltaproteobacteria0.1092.08e-061.21e-05
orderDesulfovibrionales0.1092.08e-061.21e-05
familyDesulfovibrionaceae0.1092.08e-061.21e-05
genusMegamonas0.1082.63e-061.51e-05
speciesMegamonas_unclassified0.1082.71e-061.53e-05
speciesEnterococcus_faecalis0.1082.72e-061.53e-05
genusPorphyromonas0.1083.14e-061.74e-05
speciesAnaerotruncus_unclassified-0.1073.21e-061.76e-05
speciesParabacteroides_goldsteinii0.1073.29e-061.78e-05
speciesEubacterium_ramulus-0.1073.41e-061.83e-05
genusPeptostreptococcus0.1073.72e-061.97e-05
genusProteus0.1073.83e-062.01e-05
speciesEnterococcus_faecium0.1073.88e-062.01e-05
genusPeptoniphilus0.1055.26e-062.7e-05
speciesLactococcus_garvieae0.1055.5e-062.79e-05
genusSutterella-0.1046.06e-063.04e-05
speciesLactobacillus_mucosae0.1046.48e-063.22e-05
genusCoprococcus-0.1038.26e-064.06e-05
speciesSubdoligranulum_unclassified-0.0982.04e-059.93e-05
speciesMegasphaera_unclassified0.0982.07e-059.97e-05
speciesPorphyromonas_asaccharolytica0.0982.34e-050.000111
classClostridia-0.0982.38e-050.000111
orderClostridiales-0.0982.38e-050.000111
speciesBacteroides_coprocola0.0972.74e-050.000127
speciesGemella_morbillorum0.0972.86e-050.000131
speciesCoprobacillus_sp_29_10.0963e-050.000136
speciesPorphyromonas_uenonis0.0963.07e-050.000138
orderLactobacillales0.0963.28e-050.000146
genusSubdoligranulum-0.0963.31e-050.000146
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0953.56e-050.000156
speciesCoprobacillus_sp_D60.0953.65e-050.000158
classBacilli0.0953.72e-050.00016
genusClostridiales_noname0.0954.05e-050.000172
speciesCoprococcus_comes-0.0944.3e-050.000181
speciesBilophila_wadsworthia0.0944.93e-050.000206
speciesClostridium_bartlettii0.0935.86e-050.000243
familyLactobacillaceae0.0935.99e-050.000246
genusLactobacillus0.0927.16e-050.000291
speciesBifidobacterium_dentium0.0917.55e-050.000305
speciesStreptococcus_infantarius0.0917.96e-050.000318
speciesErysipelotrichaceae_bacterium_2_2_44A0.0918.66e-050.000342
familyPeptostreptococcaceae0.0918.69e-050.000342
speciesAnaerostipes_unclassified0.099.48e-050.00037
genusPrevotella0.090.0001050.000406
speciesBifidobacterium_adolescentis-0.0890.0001070.000411
speciesVeillonella_parvula0.0890.0001130.00043
speciesStreptococcus_salivarius0.0890.0001140.00043
genusParvimonas0.0890.0001170.000438
speciesParvimonas_unclassified0.0890.0001180.000439
speciesMegamonas_hypermegale0.0890.0001190.000439
speciesAcidaminococcus_intestini0.0880.0001490.000545
familyRuminococcaceae-0.0870.0001590.000573
speciesMegamonas_rupellensis0.0870.0001590.000573
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0860.0001850.000662
speciesBacteroides_plebeius0.0850.0002540.000901
speciesBacteroides_stercoris0.0840.000270.000951
speciesBacteroides_thetaiotaomicron0.0840.0002850.000996
speciesDorea_longicatena-0.0840.0002890.001
speciesButyrivibrio_unclassified-0.0830.0003220.00111
speciesProteus_mirabilis0.0830.0003380.00116
speciesBifidobacterium_pseudocatenulatum0.0820.0003790.00129
speciesStreptococcus_thermophilus-0.0810.0004210.00142
genusDorea-0.0810.0004850.00162
familyActinomycetaceae0.080.0005610.00186
speciesLachnospiraceae_bacterium_1_1_57FAA0.0790.0006380.00211
genusVeillonella0.0790.0006580.00216
speciesPrevotella_buccae0.0780.0006820.00222
genusPseudoflavonifractor-0.0780.0007630.00245
speciesPseudoflavonifractor_capillosus-0.0780.0007630.00245
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0780.0007950.00254
genusFaecalibacterium-0.0770.0009280.00292
speciesFaecalibacterium_prausnitzii-0.0770.0009280.00292
speciesBacteroides_oleiciplenus0.0750.001110.00347
speciesPeptostreptococcus_stomatis0.0740.001280.00397
genusPeptostreptococcaceae_noname0.0740.00130.00401
speciesAnaerotruncus_colihominis0.0740.001360.00417
speciesDorea_formicigenerans-0.0740.001440.00439
genusActinomyces0.0730.001570.00475
speciesFusobacterium_varium0.0730.001580.00475
speciesErysipelotrichaceae_bacterium_6_1_450.0730.001610.00481
phylumFirmicutes-0.0720.001780.00528
genusSolobacterium0.0720.001940.00565
speciesSolobacterium_moorei0.0720.001940.00565
speciesPrevotella_copri0.0720.001940.00565
speciesMitsuokella_unclassified-0.0710.002140.0062
speciesCoprococcus_catus-0.0710.002220.00639
speciesBacteroides_salyersiae0.0710.002280.00652
classEpsilonproteobacteria0.070.002340.0066
orderCampylobacterales0.070.002340.0066
familyPropionibacteriaceae-0.070.002350.0066
speciesRuminococcus_torques0.070.002380.00665
familyCampylobacteraceae0.070.002460.00683
speciesBacteroides_uniformis-0.070.002520.00696
familyVeillonellaceae0.070.002590.00711
genusCampylobacter0.0690.002860.0078
speciesLactobacillus_vaginalis0.0690.002880.00781
speciesEnterobacter_aerogenes0.0690.003030.00815
speciesRoseburia_hominis-0.0680.003040.00815
speciesPeptostreptococcus_anaerobius0.0680.003060.00816
speciesEggerthella_lenta0.0680.00310.00822
speciesAlistipes_shahii-0.0680.003170.00836
familyBacillales_noname0.0670.003540.00923
genusGemella0.0670.003540.00923
speciesBacteroides_caccae0.0670.003970.0103
speciesLachnospiraceae_bacterium_5_1_57FAA0.0660.004140.0107
familyBacteroidaceae0.0650.004840.0123
genusBacteroides0.0650.004840.0123
speciesLactobacillus_amylovorus0.0650.004920.0125
speciesButyrivibrio_crossotus-0.0650.004940.0125
speciesClostridium_leptum-0.0650.005060.0127
speciesEubacterium_biforme-0.0640.005580.0139
speciesBacteroides_pectinophilus-0.0640.005690.0141
speciesLactobacillus_fermentum0.0630.006470.016
orderBacillales0.0630.006740.0165
speciesLachnospiraceae_bacterium_2_1_58FAA0.0630.006750.0165
familyStreptococcaceae0.0620.007080.0172
genusBarnesiella-0.0620.007160.0172
speciesBarnesiella_intestinihominis-0.0620.007160.0172
speciesStreptococcus_gordonii0.0610.007830.0188
genusMitsuokella-0.0610.008220.0196
speciesPrevotella_bivia0.0610.008260.0196
genusStreptococcus0.0610.008320.0196
genusCoprobacter-0.0610.008480.0198
speciesCoprobacter_fastidiosus-0.0610.008480.0198
speciesBacteroides_nordii0.0610.008580.0199
speciesBlautia_hydrogenotrophica-0.0610.008620.0199
speciesStreptococcus_mitis_oralis_pneumoniae0.0610.008790.0202
speciesLachnospiraceae_bacterium_2_1_46FAA0.060.009360.0214
speciesAnaerostipes_hadrus-0.060.00940.0214
speciesRuminococcus_sp_5_1_39BFAA-0.060.009940.0226
speciesCoprococcus_sp_ART55_1-0.0590.01020.023
speciesAlistipes_sp_HGB5-0.0590.01040.0234
speciesClostridium_asparagiforme0.0590.0110.0246
speciesStreptococcus_vestibularis0.0590.01130.0252
speciesVeillonella_dispar0.0580.01180.0261
genusAcidaminococcus0.0580.0120.0265
speciesClostridium_sp_ATCC_BAA_4420.0580.01230.027
speciesAlistipes_senegalensis-0.0580.01270.0278
speciesParaprevotella_xylaniphila-0.0570.01290.0281
speciesKlebsiella_sp_MS_92_30.0570.01350.0291
speciesVeillonella_unclassified0.0570.01350.0291
genusParaprevotella-0.0570.01380.0295
speciesBacteroides_clarus0.0570.01380.0295
speciesParaprevotella_unclassified-0.0560.01480.0315
genusRoseburia-0.0560.01490.0315
speciesSubdoligranulum_sp_4_3_54A2FAA0.0560.01540.0324
speciesBacteroides_intestinalis0.0560.01570.0329
speciesBlautia_producta0.0550.01660.0347
speciesVeillonella_atypica0.0550.01690.0351
orderActinomycetales0.0540.01990.0412
speciesLachnospiraceae_bacterium_1_4_56FAA0.0540.02050.0423
speciesLactobacillus_acidophilus-0.0540.02060.0423
speciesRoseburia_intestinalis-0.0530.02120.0433
speciesLactococcus_phage_P680-0.0530.0220.0448
familyMyoviridae0.0520.02580.0523
speciesAcidaminococcus_fermentans0.0510.02760.0557
speciesAlistipes_sp_AP110.050.02940.0591
speciesEubacterium_ventriosum-0.050.0320.064
speciesEubacterium_hallii-0.050.03220.0641
speciesParaprevotella_clara-0.0490.0340.0674
speciesPrevotella_stercorea0.0490.03550.0701
familyLachnospiraceae-0.0490.0360.0708
familySiphoviridae-0.0480.03690.0723
speciesLeuconostoc_lactis0.0480.0380.0741
familyBacteroidales_noname-0.0470.04040.0778
genusBacteroidales_noname-0.0470.04040.0778
speciesBacteroidales_bacterium_ph8-0.0470.04040.0778
speciesMegamonas_funiformis0.0470.04060.0779
speciesAlistipes_putredinis-0.0470.04130.0785
genusCatenibacterium-0.0470.04140.0785
speciesCatenibacterium_mitsuokai-0.0470.04140.0785
speciesC2likevirus_unclassified-0.0470.04390.0829
speciesBacteroides_finegoldii0.0460.04450.0837
genusRuminococcaceae_noname-0.0460.04530.0845
speciesRuminococcaceae_bacterium_D16-0.0460.04530.0845
genusC2likevirus-0.0460.04610.0857
speciesBacteroides_xylanisolvens0.0460.04710.0872
speciesOscillibacter_sp_KLE_1728-0.0460.04730.0872
speciesLactobacillus_sanfranciscensis0.0460.04750.0872
speciesStreptococcus_australis0.0460.04840.0885
speciesRoseburia_unclassified-0.0450.04930.0898
speciesStreptococcus_pasteurianus0.0450.04980.0904
genusBurkholderiales_noname0.0440.0570.103
speciesBurkholderiales_bacterium_1_1_470.0440.0570.103
classNegativicutes0.0440.05760.103
orderSelenomonadales0.0440.05760.103
speciesLactobacillus_crispatus0.0440.05870.104
speciesBifidobacterium_catenulatum-0.0440.05870.104
genusPhascolarctobacterium-0.0430.06130.108
speciesPhascolarctobacterium_succinatutens-0.0430.06130.108
familySutterellaceae-0.0430.06160.108
speciesMegasphaera_elsdenii0.0420.06870.12
genusLachnospiraceae_noname0.0420.06980.121
orderPasteurellales0.0420.07020.121
familyPasteurellaceae0.0420.07020.121
speciesHaemophilus_parainfluenzae0.0420.07260.125
classErysipelotrichia0.0410.07340.125
orderErysipelotrichales0.0410.07340.125
familyErysipelotrichaceae0.0410.07340.125
genusHaemophilus0.0410.07510.128
genusAdlercreutzia-0.0410.07630.128
speciesAdlercreutzia_equolifaciens-0.0410.07630.128
familyBurkholderiales_noname0.0410.07710.128
genusParasutterella0.0410.07720.128
speciesParasutterella_excrementihominis0.0410.07720.128
genusClostridiaceae_noname0.0410.07750.128
speciesClostridiaceae_bacterium_JC1180.0410.07750.128
familyPodoviridae0.0410.07860.13
speciesParabacteroides_johnsonii0.040.08030.132
speciesCampylobacter_concisus0.040.08310.136
speciesOdoribacter_unclassified-0.040.08350.136
genusButyricimonas0.0390.08950.145
speciesButyricimonas_synergistica0.0390.08950.145
phylumVerrucomicrobia-0.0390.09170.145
classVerrucomicrobiae-0.0390.09170.145
orderVerrucomicrobiales-0.0390.09170.145
familyVerrucomicrobiaceae-0.0390.09170.145
genusAkkermansia-0.0390.09170.145
speciesLactobacillus_gasseri0.0390.09170.145
speciesAkkermansia_muciniphila-0.0390.09170.145
speciesClostridium_sp_L2_50-0.0390.09430.149
speciesClostridium_spiroforme-0.0380.1050.165
familyViruses_noname-0.0370.1070.167
genusViruses_noname-0.0370.1070.167
speciesBacteroides_coprophilus0.0370.1080.168
speciesBacteroides_dorei-0.0370.1140.177
speciesEubacterium_limosum0.0360.1190.184
speciesParabacteroides_sp_D13-0.0360.120.184
speciesEubacterium_dolichum0.0360.120.184
speciesCollinsella_aerofaciens-0.0360.1240.19
genusSlackia0.0350.1260.192
speciesErysipelotrichaceae_bacterium_21_30.0350.1290.196
speciesTuricibacter_unclassified-0.0350.1350.204
speciesOscillibacter_unclassified-0.0350.1350.204
speciesBacteroides_sp_3_1_190.0340.140.211
speciesRuminococcus_champanellensis-0.0340.1410.212
genusAnaerotruncus-0.0330.1490.223
speciesParabacteroides_distasonis0.0330.1580.236
genusTuricibacter-0.0320.1680.249
speciesLactobacillus_plantarum0.0320.1680.249
genusAggregatibacter0.0320.1690.25
familyOscillospiraceae-0.0320.1710.251
genusOscillibacter-0.0320.1710.251
speciesCoprococcus_eutactus-0.0310.1770.259
genusHoldemania0.030.1930.282
speciesRoseburia_inulinivorans-0.030.1940.283
speciesBacteroides_faecis0.030.2020.293
speciesPropionibacterium_freudenreichii-0.0290.2030.294
speciesLactococcus_phage_bIL67-0.0290.2050.296
speciesAlistipes_unclassified-0.0290.210.302
familyMicrococcaceae0.0290.2140.306
familyOxalobacteraceae0.0290.2140.306
genusRothia0.0290.2150.307
speciesHoldemania_unclassified0.0290.2160.307
genusOxalobacter0.0290.2170.307
speciesOxalobacter_formigenes0.0290.2170.307
speciesRuminococcus_obeum-0.0280.2280.321
speciesMethanobrevibacter_smithii-0.0280.2340.329
genusPropionibacterium-0.0270.2390.335
speciesAggregatibacter_segnis0.0270.2410.337
speciesLactobacillus_oris0.0270.2430.338
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0270.2440.339
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0270.2480.342
speciesLactococcus_lactis-0.0270.2490.342
orderPseudomonadales0.0270.250.342
genusButyricicoccus0.0270.250.342
speciesButyricicoccus_pullicaecorum0.0270.250.342
speciesStreptococcus_mutans0.0270.2510.342
orderBurkholderiales-0.0270.2520.343
genusLeuconostoc0.0260.2610.354
speciesOlsenella_unclassified-0.0260.2660.36
speciesBifidobacterium_animalis-0.0260.2690.363
genusSutterellaceae_unclassified-0.0260.270.363
speciesBacteroides_vulgatus0.0250.2770.371
speciesSutterella_parvirubra0.0250.2780.372
speciesRuminococcus_callidus0.0250.2830.377
speciesRothia_mucilaginosa0.0250.2850.379
genusAnaerostipes-0.0240.3040.403
speciesBifidobacterium_angulatum-0.0240.3070.406
speciesLactobacillus_casei_paracasei0.0230.3120.411
classBetaproteobacteria-0.0230.3160.415
speciesBifidobacterium_breve0.0230.3240.425
speciesBacteroides_massiliensis0.0230.3260.426
speciesCollinsella_tanakaei0.0220.3390.442
genusDialister-0.0220.3510.455
genusRuminococcus-0.0220.3510.455
familyRikenellaceae-0.0210.3550.458
genusAlistipes-0.0210.3550.458
orderCaudovirales-0.0210.3560.458
genusDesulfovibrio0.0210.3610.463
speciesBacteroides_eggerthii0.0210.3650.467
speciesPeptostreptococcaceae_noname_unclassified-0.0210.3720.475
speciesBacteroides_sp_4_3_47FAA0.0210.3730.475
speciesCollinsella_unclassified0.020.3820.485
familyStaphylococcaceae0.020.3850.486
genusSiphoviridae_noname-0.020.3860.486
speciesRuminococcus_lactaris-0.020.3860.486
genusParabacteroides0.020.3870.486
genusCollinsella-0.0190.40.501
speciesHoldemania_sp_AP20.0190.4020.502
speciesMitsuokella_multacida0.0190.4030.502
genusOdoribacter-0.0190.4220.524
genusErysipelotrichaceae_noname0.0190.4230.524
genusMethanobrevibacter-0.0180.4250.525
speciesAlistipes_indistinctus0.0180.4260.525
speciesDialister_invisus-0.0180.4440.546
phylumEuryarchaeota-0.0180.4470.548
speciesBifidobacterium_longum0.0170.4510.551
familySuccinivibrionaceae-0.0170.4560.556
speciesBacteroides_sp_2_1_22-0.0170.4720.574
speciesEggerthella_sp_1_3_56FAA-0.0160.4810.584
speciesClostridium_sp_KLE_17550.0160.4970.601
speciesTuricibacter_sanguinis-0.0160.5010.605
speciesBacteroides_barnesiae-0.0150.5090.613
speciesParabacteroides_merdae-0.0150.5120.613
genusOlsenella-0.0150.5130.613
speciesAlistipes_finegoldii-0.0150.5130.613
genusGordonibacter0.0150.5170.615
speciesGordonibacter_pamelaeae0.0150.5170.615
speciesMethanobrevibacter_unclassified-0.0140.5380.638
speciesBacteroides_fluxus-0.0140.5440.644
phylumActinobacteria0.0140.5470.644
classActinobacteria0.0140.5470.644
speciesDesulfovibrio_piger-0.0140.5530.649
phylumBacteroidetes-0.0140.5580.65
classBacteroidia-0.0140.5580.65
orderBacteroidales-0.0140.5580.65
speciesStreptococcus_sanguinis0.0130.5610.651
genusSuccinatimonas-0.0130.5640.651
speciesSuccinatimonas_hippei-0.0130.5640.651
orderAeromonadales0.0130.5680.651
speciesLactobacillus_ruminis-0.0130.5690.651
orderCoriobacteriales0.0130.570.651
familyCoriobacteriaceae0.0130.570.651
speciesStreptococcus_parasanguinis0.0130.570.651
speciesLactococcus_phage_936_sensu_lato-0.0120.590.673
classMethanobacteria-0.0120.5960.675
orderMethanobacteriales-0.0120.5960.675
familyMethanobacteriaceae-0.0120.5960.675
speciesEubacterium_cylindroides-0.0120.5980.675
genusStaphylococcus0.0120.6040.679
speciesOdoribacter_splanchnicus-0.0120.6040.679
speciesLactobacillus_rhamnosus-0.0120.6150.69
speciesLactococcus_phage_jm2-0.0110.6480.723
speciesDesulfovibrio_desulfuricans0.0110.6480.723
familyPrevotellaceae0.010.6510.725
speciesParabacteroides_unclassified0.010.6530.725
speciesBifidobacterium_bifidum0.010.6670.739
speciesEnterobacteria_phage_HK5440.010.6690.74
speciesEubacterium_eligens-0.010.6730.742
familyPorphyromonadaceae0.010.6790.747
speciesBacteroides_cellulosilyticus0.0090.6870.753
speciesParabacteroides_sp_20_30.0090.6890.753
speciesBacteroides_ovatus-0.0090.6890.753
speciesDialister_succinatiphilus-0.0090.6970.76
familyAcidaminococcaceae-0.0090.7060.768
phylumViruses_noname-0.0080.7180.777
classViruses_noname-0.0080.7180.777
genusActinobacillus0.0080.7340.791
speciesActinobacillus_unclassified0.0080.7340.791
speciesOdoribacter_laneus0.0080.7360.791
speciesSlackia_piriformis0.0070.7590.813
genusLactococcus0.0070.760.813
speciesCollinsella_intestinalis0.0070.770.822
genusCoriobacteriaceae_noname0.0060.8020.855
speciesErysipelotrichaceae_bacterium_3_1_53-0.0060.8090.86
genusLambdalikevirus0.0050.8240.874
speciesDorea_unclassified-0.0050.8340.883
speciesOscillibacter_sp_KLE_1745-0.0040.8510.899
orderViruses_noname0.0040.8670.913
speciesBacteroides_sp_1_1_60.0040.8690.914
speciesRuminococcus_sp_JC304-0.0040.8710.914
speciesLactobacillus_reuteri0.0040.8740.915
speciesHaemophilus_paraphrohaemolyticus0.0040.8790.917
speciesHaemophilus_sputorum-0.0030.880.917
speciesLactococcus_phage_phi70.0030.8970.933
genusTunalikevirus0.0030.90.934
speciesLactobacillus_delbrueckii0.0030.9060.936
speciesHoldemania_filiformis-0.0030.9060.936
speciesKlebsiella_phage_KP36-0.0020.9210.949
speciesAlistipes_onderdonkii0.0020.9350.957
speciesEubacterium_sp_3_1_31-0.0020.9360.957
orderBifidobacteriales0.0020.9370.957
familyBifidobacteriaceae0.0020.9370.957
genusAcidaminococcaceae_unclassified0.0020.9390.957
genusMethanosphaera-0.0020.9470.961
speciesMethanosphaera_stadtmanae-0.0020.9470.961
speciesRuminococcus_bromii-0.0010.9560.968
speciesBacteroides_salanitronis-0.0010.9580.968
speciesCoriobacteriaceae_bacterium_phI0.0010.9780.985
genusMyoviridae_noname0.0010.9790.985
speciesAcidaminococcus_unclassified0.00.990.994
speciesStreptococcus_phage_Sfi210.00.9930.995
genusBifidobacterium0.00.9990.999
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.00345149789770.00173516009840.0013007082133726528.69309
Crohns diseaseSpain17660.005623988619410.004829722211570.0174180761093914630.4106
ObesityDenmark1691230.002481766352220.002493741160550.0192263933201314210.3318
Type II diabetesSweden53920.002529540043410.003437128146710.072225997729127699.3769
Type II diabetesChina1831850.009041461536630.008322406675390.0732291068767831327.4728
Rheumatoid arthritisChina127980.006731445400130.002243982445440.107014844879552918.438
Ulcerative colitisSpain78660.001712067990740.004829722211570.176075287167983332.4372
Colorectal cancerAustria64350.0276827886470.0004393907154740.4056808377411514351.2349
Liver cirrhosisChina1201140.005412027845930.001977026746050.5193433653682445182.1358
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382