MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-09-15 21:32:32 PST
Job id & description: 2111, LT refined structure
Query type: protein
Count queries & homologs: 1, 1
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
pdb|1LTS|H8391294CompleteK10929unknownProteobacteriaEscherichia70.87100.097.26
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesLachnospiraceae_bacterium_2_1_46FAA0.1082.71e-060.00128
speciesPrevotella_stercorea0.0927.01e-050.0125
genusPantoea0.090.0001060.0125
speciesPantoea_unclassified0.090.0001060.0125
speciesKlebsiella_unclassified0.0870.0001780.0159
speciesBacteroides_fluxus0.0860.0002020.0159
speciesFusobacterium_mortiferum0.0830.0003380.0228
speciesClostridium_perfringens0.080.0005140.0303
speciesMegamonas_funiformis0.0730.001510.0755
speciesEscherichia_unclassified0.0730.00160.0755
genusFaecalibacterium0.0630.006140.19
speciesFaecalibacterium_prausnitzii0.0630.006140.19
genusEscherichia0.0630.006490.19
orderEnterobacteriales0.0620.006920.19
familyEnterobacteriaceae0.0620.006920.19
speciesMegamonas_unclassified0.0620.006970.19
speciesEnterobacter_cloacae0.0620.007070.19
speciesEubacterium_eligens0.0620.007250.19
genusMegamonas0.0620.007790.194
speciesEscherichia_coli0.060.00960.206
genusEnterobacter0.060.009690.206
genusPrevotella0.060.009750.206
classGammaproteobacteria0.0590.01010.206
phylumProteobacteria0.0590.01060.206
speciesKlebsiella_pneumoniae0.0590.01090.206
speciesBacteroides_coprocola0.0570.01450.257
speciesBacteroides_plebeius0.0560.01470.257
genusKlebsiella0.0550.01690.277
speciesLachnospiraceae_bacterium_6_1_63FAA0.0550.0170.277
speciesRoseburia_inulinivorans0.0550.01810.285
familyPrevotellaceae0.0540.01930.294
speciesRuminococcus_gnavus0.0540.02020.298
genusActinobacillus0.0520.02580.346
speciesActinobacillus_unclassified0.0520.02580.346
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0510.02640.346
genusFusobacterium0.0510.02690.346
speciesBifidobacterium_adolescentis-0.0510.02710.346
familyFusobacteriaceae0.0510.02870.352
phylumFusobacteria0.050.03160.352
classFusobacteriia0.050.03160.352
orderFusobacteriales0.050.03160.352
genusParasutterella-0.050.03210.352
speciesParasutterella_excrementihominis-0.050.03210.352
genusSutterellaceae_unclassified0.0490.03490.374
genusSubdoligranulum-0.0470.04180.432
familyBurkholderiales_noname-0.0470.04310.432
genusBurkholderiales_noname-0.0470.04390.432
speciesBurkholderiales_bacterium_1_1_47-0.0470.04390.432
speciesSubdoligranulum_unclassified-0.0460.04560.436
speciesBacteroides_faecis0.0460.04620.436
familyPodoviridae0.0450.050.463
speciesCampylobacter_concisus0.0450.05280.463
speciesBacteroides_coprophilus0.0450.05370.463
orderBifidobacteriales-0.0450.05390.463
familyBifidobacteriaceae-0.0450.05390.463
genusBifidobacterium-0.0440.05530.465
speciesBacteroides_sp_3_1_190.0440.05620.465
speciesEnterobacter_aerogenes0.0440.05870.476
speciesStreptococcus_sanguinis0.0440.05950.476
speciesParabacteroides_johnsonii0.0420.06750.531
speciesClostridium_leptum-0.0410.07480.571
speciesLachnospiraceae_bacterium_3_1_46FAA-0.040.08060.571
familyPorphyromonadaceae-0.040.08670.571
speciesRoseburia_unclassified-0.040.08740.571
speciesBacteroides_uniformis-0.0390.08840.571
speciesAlistipes_indistinctus-0.0390.09040.571
familyRikenellaceae-0.0390.09080.571
genusAlistipes-0.0390.09080.571
speciesStreptococcus_mitis_oralis_pneumoniae0.0390.09130.571
genusMegasphaera0.0390.09170.571
speciesBifidobacterium_breve0.0390.09180.571
speciesCitrobacter_unclassified0.0390.09290.571
genusSutterella-0.0390.09420.571
genusCoprobacter-0.0390.09490.571
speciesCoprobacter_fastidiosus-0.0390.09490.571
speciesHaemophilus_parainfluenzae0.0390.09590.571
speciesLactococcus_garvieae0.0380.09640.571
speciesCitrobacter_freundii0.0380.09660.571
orderPasteurellales0.0380.09670.571
familyPasteurellaceae0.0380.09670.571
genusHaemophilus0.0380.0980.571
speciesSutterella_wadsworthensis-0.0380.1010.576
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0380.1020.576
speciesCollinsella_tanakaei0.0380.1030.576
speciesStreptococcus_thermophilus-0.0380.1040.576
speciesBifidobacterium_longum-0.0380.1050.576
speciesParabacteroides_unclassified-0.0370.1090.589
genusPseudoflavonifractor-0.0370.1140.589
speciesPseudoflavonifractor_capillosus-0.0370.1140.589
speciesHaemophilus_sputorum0.0370.1150.589
speciesFusobacterium_varium0.0360.1150.589
speciesBacteroides_eggerthii0.0360.1150.589
genusButyrivibrio-0.0360.1160.589
speciesStreptococcus_infantarius0.0360.120.603
speciesDorea_unclassified-0.0360.1220.606
speciesTuricibacter_unclassified0.0350.1310.644
genusCitrobacter0.0350.1360.658
speciesAggregatibacter_segnis0.0340.1370.658
speciesPrevotella_buccae0.0340.1380.658
speciesErysipelotrichaceae_bacterium_21_3-0.0340.1460.683
speciesAlistipes_shahii-0.0340.1470.683
speciesSlackia_piriformis0.0340.1480.683
speciesMegamonas_hypermegale0.0330.150.683
speciesCollinsella_intestinalis0.0330.1510.683
speciesEubacterium_ventriosum-0.0330.1520.683
orderViruses_noname0.0330.1570.699
familySiphoviridae-0.0320.1630.719
speciesLachnospiraceae_bacterium_1_4_56FAA0.0320.1660.725
genusTuricibacter0.0320.1720.738
speciesVeillonella_dispar0.0320.1720.738
speciesBifidobacterium_pseudocatenulatum0.0310.1760.743
genusButyricicoccus0.0310.1780.743
speciesButyricicoccus_pullicaecorum0.0310.1780.743
speciesBacteroides_intestinalis0.0310.1810.743
speciesPrevotella_copri0.0310.1810.743
speciesMegamonas_rupellensis0.030.1930.785
speciesEubacterium_ramulus-0.030.1970.795
familyLeuconostocaceae0.030.20.8
genusParabacteroides-0.0290.210.829
speciesDorea_longicatena-0.0290.2150.829
familyClostridiales_noname-0.0290.2160.829
familyOscillospiraceae-0.0290.2160.829
genusOscillibacter-0.0290.2160.829
genusOlsenella-0.0280.2190.834
genusDorea-0.0280.2250.837
speciesBifidobacterium_bifidum-0.0280.2270.837
genusAggregatibacter0.0280.2320.837
genusSlackia0.0280.2320.837
speciesVeillonella_parvula0.0280.2330.837
speciesMitsuokella_multacida0.0280.2340.837
genusRoseburia0.0270.2350.837
speciesOlsenella_unclassified-0.0270.2350.837
genusPyramidobacter0.0270.2390.837
speciesPyramidobacter_piscolens0.0270.2390.837
familyAcidaminococcaceae-0.0270.2430.837
speciesClostridium_clostridioforme-0.0270.2430.837
genusDialister-0.0270.2450.837
speciesButyrivibrio_unclassified-0.0270.2480.837
speciesAlistipes_finegoldii-0.0270.2510.837
speciesAnaerotruncus_colihominis-0.0260.2550.837
orderActinomycetales-0.0260.2560.837
speciesBacteroides_salyersiae0.0260.2570.837
speciesLactobacillus_fermentum0.0260.2580.837
speciesOscillibacter_unclassified-0.0260.2630.837
phylumActinobacteria-0.0260.2670.837
classActinobacteria-0.0260.2670.837
genusRuminococcaceae_noname-0.0260.2680.837
speciesRuminococcaceae_bacterium_D16-0.0260.2680.837
speciesAlistipes_sp_AP11-0.0250.2710.837
genusC2likevirus-0.0250.2720.837
speciesC2likevirus_unclassified-0.0250.2730.837
phylumSynergistetes0.0250.2770.837
classSynergistia0.0250.2770.837
orderSynergistales0.0250.2770.837
familySynergistaceae0.0250.2770.837
speciesParaprevotella_clara0.0250.2810.837
speciesBacteroides_fragilis0.0250.2820.837
speciesWeissella_confusa0.0250.2850.837
speciesCollinsella_aerofaciens-0.0250.2850.837
speciesBacteroides_thetaiotaomicron-0.0250.2890.837
speciesMegasphaera_unclassified0.0240.2910.837
genusClostridiales_noname-0.0240.2920.837
speciesAlistipes_onderdonkii-0.0240.2920.837
speciesKlebsiella_oxytoca0.0240.2930.837
speciesAlistipes_unclassified-0.0240.2940.837
genusPhascolarctobacterium-0.0240.3010.837
speciesPhascolarctobacterium_succinatutens-0.0240.3010.837
familyVeillonellaceae0.0240.3050.837
speciesBacteroides_stercoris0.0240.3070.837
familyBacillales_noname0.0240.3090.837
genusGemella0.0240.3090.837
speciesStreptococcus_salivarius0.0230.3130.837
genusButyricimonas-0.0230.3160.837
speciesButyricimonas_synergistica-0.0230.3160.837
speciesStreptococcus_gordonii0.0230.3180.837
speciesLactococcus_lactis-0.0230.3180.837
genusAdlercreutzia-0.0230.320.837
speciesAdlercreutzia_equolifaciens-0.0230.320.837
speciesRuminococcus_lactaris0.0230.3220.837
speciesEnterococcus_faecalis0.0230.3250.837
genusAnaerotruncus-0.0230.3270.837
speciesCoprococcus_catus-0.0230.3270.837
speciesCollinsella_unclassified0.0230.3280.837
speciesBlautia_hydrogenotrophica-0.0230.3280.837
speciesLactobacillus_ruminis0.0230.3280.837
genusAcidaminococcaceae_unclassified-0.0220.3330.843
speciesCoprococcus_comes-0.0220.3340.843
speciesStreptococcus_australis0.0220.3360.844
orderBacillales0.0220.3380.844
speciesStreptococcus_anginosus0.0220.3420.848
speciesEubacterium_dolichum0.0220.3430.848
genusVeillonella0.0220.350.858
speciesMegasphaera_micronuciformis0.0220.3510.858
speciesButyrivibrio_crossotus-0.0210.3540.859
familyStreptococcaceae0.0210.3570.859
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0210.3590.859
speciesBifidobacterium_catenulatum-0.0210.360.859
speciesBilophila_unclassified0.0210.3610.859
genusClostridium0.0210.3620.859
speciesDialister_invisus-0.0210.3640.859
speciesEubacterium_sp_3_1_31-0.0210.370.867
genusBlautia0.0210.3710.867
familyClostridiaceae0.0210.3760.869
genusPorphyromonas-0.020.380.869
genusCatenibacterium-0.020.3810.869
speciesCatenibacterium_mitsuokai-0.020.3810.869
speciesRuminococcus_sp_5_1_39BFAA-0.020.3820.869
speciesVeillonella_unclassified0.020.3840.869
speciesFusobacterium_nucleatum0.020.3850.869
speciesRuminococcus_obeum-0.020.3880.872
genusSiphoviridae_noname-0.020.390.872
genusBilophila0.020.3950.878
speciesClostridiales_bacterium_1_7_47FAA-0.020.3960.878
speciesVeillonella_atypica0.020.3980.878
speciesClostridium_nexile0.0190.4020.883
genusLeuconostoc0.0190.4050.883
speciesPrevotella_bivia0.0190.4060.883
familyClostridiales_Family_XI_Incertae_Sedis-0.0190.420.897
genusCoprococcus-0.0190.420.897
speciesCoprococcus_eutactus-0.0190.420.897
genusCampylobacter0.0190.4220.897
speciesBlautia_producta-0.0190.4220.897
familyCampylobacteraceae0.0180.4290.908
speciesEubacterium_cylindroides-0.0180.4320.91
speciesParabacteroides_distasonis-0.0180.4420.915
speciesParabacteroides_goldsteinii-0.0180.4460.915
speciesParaprevotella_unclassified0.0180.4470.915
speciesBacteroides_ovatus-0.0180.4480.915
genusParaprevotella0.0170.450.915
speciesAcidaminococcus_unclassified-0.0170.4510.915
speciesEubacterium_rectale-0.0170.4520.915
orderBurkholderiales-0.0170.4530.915
familyPropionibacteriaceae-0.0170.4580.915
classEpsilonproteobacteria0.0170.4640.915
orderCampylobacterales0.0170.4640.915
speciesPorphyromonas_asaccharolytica-0.0170.4650.915
speciesEnterococcus_faecium-0.0170.4650.915
speciesRoseburia_hominis-0.0170.4660.915
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0170.4670.915
speciesOscillibacter_sp_KLE_1745-0.0170.4710.915
speciesBacteroides_nordii-0.0160.4780.915
speciesClostridium_bartlettii-0.0160.4830.915
orderPseudomonadales-0.0160.4860.915
speciesAnaerostipes_unclassified-0.0160.4860.915
speciesAlistipes_putredinis-0.0160.4870.915
classBetaproteobacteria-0.0160.4970.915
genusWeissella0.0160.50.915
speciesEubacterium_siraeum-0.0160.5030.915
speciesPeptostreptococcaceae_noname_unclassified0.0150.5040.915
speciesBacteroides_oleiciplenus-0.0150.5060.915
speciesLactobacillus_delbrueckii-0.0150.5080.915
speciesBifidobacterium_animalis-0.0150.5080.915
speciesBacteroides_sp_2_1_22-0.0150.5120.915
familyBacteroidales_noname0.0150.5140.915
genusBacteroidales_noname0.0150.5140.915
speciesBacteroidales_bacterium_ph80.0150.5140.915
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0150.5150.915
speciesStreptococcus_mutans0.0150.5160.915
genusCoriobacteriaceae_noname-0.0150.5170.915
speciesPeptostreptococcus_stomatis-0.0150.5170.915
speciesLactobacillus_gasseri-0.0150.5170.915
genusParvimonas-0.0150.5190.915
speciesParvimonas_unclassified-0.0150.5190.915
speciesCoriobacteriaceae_bacterium_phI-0.0150.520.915
speciesErysipelotrichaceae_bacterium_3_1_53-0.0150.5220.915
speciesBacteroides_clarus0.0150.5290.915
speciesDialister_succinatiphilus-0.0140.5310.915
speciesClostridium_bolteae-0.0140.5410.915
speciesLactobacillus_casei_paracasei-0.0140.5430.915
speciesParabacteroides_merdae0.0140.5440.915
classDeltaproteobacteria0.0140.5510.915
orderDesulfovibrionales0.0140.5510.915
familyDesulfovibrionaceae0.0140.5510.915
speciesAcidaminococcus_fermentans-0.0140.5510.915
speciesHoldemania_unclassified0.0140.5520.915
speciesOdoribacter_splanchnicus-0.0140.5520.915
speciesEubacterium_limosum-0.0140.5530.915
genusPropionibacterium-0.0140.5550.915
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0140.5550.915
speciesAcidaminococcus_intestini0.0140.5550.915
speciesClostridium_ramosum0.0140.5550.915
speciesFusobacterium_ulcerans-0.0140.5580.915
speciesMegasphaera_elsdenii-0.0130.5670.915
speciesLactobacillus_mucosae0.0130.580.915
speciesClostridium_hathewayi-0.0130.580.915
orderCaudovirales-0.0130.5830.915
speciesLactococcus_phage_P680-0.0130.5840.915
genusMethanosphaera-0.0120.5890.915
speciesMethanosphaera_stadtmanae-0.0120.5890.915
speciesRuminococcus_callidus0.0120.590.915
speciesWeissella_cibaria-0.0120.5970.915
speciesBilophila_wadsworthia0.0120.5970.915
speciesEubacterium_biforme-0.0120.5970.915
speciesTuricibacter_sanguinis0.0120.6080.915
speciesBacteroides_pectinophilus-0.0120.6090.915
familyOxalobacteraceae-0.0120.6120.915
speciesLachnospiraceae_bacterium_1_1_57FAA0.0120.6130.915
orderCoriobacteriales-0.0120.6180.915
familyCoriobacteriaceae-0.0120.6180.915
genusOxalobacter-0.0120.6180.915
speciesOxalobacter_formigenes-0.0120.6180.915
genusStreptococcus0.0120.6190.915
genusErysipelotrichaceae_noname-0.0110.620.915
familyRuminococcaceae0.0110.6230.915
speciesGemella_morbillorum-0.0110.6230.915
speciesLactobacillus_plantarum-0.0110.6280.915
speciesRuminococcus_champanellensis-0.0110.6280.915
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0110.6290.915
phylumVerrucomicrobia-0.0110.6310.915
classVerrucomicrobiae-0.0110.6310.915
orderVerrucomicrobiales-0.0110.6310.915
familyVerrucomicrobiaceae-0.0110.6310.915
genusAkkermansia-0.0110.6310.915
speciesAkkermansia_muciniphila-0.0110.6310.915
familyMicrococcaceae-0.0110.6340.915
genusRothia-0.0110.6340.915
genusOdoribacter-0.0110.6340.915
speciesPorphyromonas_uenonis-0.0110.6340.915
speciesEggerthella_unclassified0.0110.6340.915
speciesPropionibacterium_freudenreichii-0.0110.6360.915
genusGordonibacter-0.0110.6370.915
speciesGordonibacter_pamelaeae-0.0110.6370.915
speciesLachnospiraceae_bacterium_2_1_58FAA0.0110.6380.915
speciesClostridium_sp_L2_500.0110.6390.915
speciesLactobacillus_sanfranciscensis-0.0110.6410.915
orderLactobacillales0.0110.6430.915
speciesClostridium_citroniae-0.0110.6440.915
genusEggerthella0.0110.6460.915
genusDesulfovibrio-0.0110.6470.915
classNegativicutes0.010.6510.915
orderSelenomonadales0.010.6510.915
familySutterellaceae-0.010.6510.915
classBacilli0.010.6540.915
speciesLactobacillus_rhamnosus-0.010.6540.915
familyStaphylococcaceae-0.010.6610.915
speciesClostridium_sp_ATCC_BAA_442-0.010.6610.915
speciesLactobacillus_vaginalis-0.010.6640.915
speciesAlistipes_sp_HGB5-0.010.6640.915
genusPeptoniphilus-0.010.6690.915
genusStaphylococcus-0.010.6710.915
speciesLactobacillus_crispatus-0.010.6710.915
speciesParaprevotella_xylaniphila0.010.6810.915
speciesLeuconostoc_lactis-0.0090.6890.915
speciesLactobacillus_oris-0.0090.6920.915
orderAeromonadales-0.0090.6970.915
speciesOdoribacter_laneus-0.0090.7020.915
speciesCoprobacillus_sp_29_1-0.0090.7050.915
speciesAnaerostipes_hadrus0.0090.7050.915
speciesDorea_formicigenerans-0.0090.7070.915
familyActinomycetaceae-0.0090.710.915
phylumFirmicutes-0.0090.7110.915
familyViruses_noname-0.0090.7110.915
genusViruses_noname-0.0090.7110.915
speciesMitsuokella_unclassified0.0090.7130.915
speciesPeptostreptococcus_anaerobius-0.0080.7140.915
speciesLactobacillus_amylovorus-0.0080.7160.915
speciesStreptococcus_lutetiensis-0.0080.7220.915
genusActinomyces-0.0080.7230.915
genusClostridiaceae_noname-0.0080.7230.915
speciesClostridiaceae_bacterium_JC118-0.0080.7230.915
familyLactobacillaceae-0.0080.7250.915
speciesBifidobacterium_angulatum-0.0080.7250.915
speciesLachnospiraceae_bacterium_5_1_57FAA0.0080.7260.915
genusProteus-0.0080.7310.915
speciesStreptococcus_pasteurianus-0.0080.7310.915
speciesHoldemania_sp_AP2-0.0080.7310.915
familyLachnospiraceae0.0080.7320.915
genusPeptostreptococcaceae_noname0.0080.7320.915
genusBarnesiella-0.0080.7330.915
speciesBarnesiella_intestinihominis-0.0080.7330.915
familyMyoviridae-0.0080.7350.915
classErysipelotrichia-0.0080.7370.915
orderErysipelotrichales-0.0080.7370.915
familyErysipelotrichaceae-0.0080.7370.915
familyBacteroidaceae-0.0080.740.915
genusBacteroides-0.0080.740.915
familySuccinivibrionaceae-0.0080.7410.915
speciesLactococcus_phage_phi7-0.0080.7410.915
genusSuccinatimonas-0.0080.7440.915
genusMitsuokella0.0080.7440.915
genusLactobacillus-0.0080.7440.915
speciesSuccinatimonas_hippei-0.0080.7440.915
speciesRuminococcus_bromii0.0080.7440.915
speciesRothia_mucilaginosa-0.0080.7450.915
genusPeptostreptococcus0.0070.7490.915
speciesHaemophilus_paraphrohaemolyticus-0.0070.7510.915
speciesOscillibacter_sp_KLE_1728-0.0070.7510.915
speciesBacteroides_xylanisolvens-0.0070.7550.915
speciesClostridium_spiroforme-0.0070.7570.915
genusFlavonifractor-0.0070.7610.915
speciesLactobacillus_reuteri-0.0070.7610.915
speciesFlavonifractor_plautii-0.0070.7610.915
speciesCoprobacillus_sp_D6-0.0070.7640.915
speciesClostridium_symbiosum0.0070.7650.915
speciesLactobacillus_acidophilus-0.0070.7680.915
speciesRuminococcus_sp_JC304-0.0070.7680.915
speciesLactococcus_phage_936_sensu_lato-0.0070.7710.915
speciesClostridium_sp_KLE_1755-0.0070.7750.915
familyPeptostreptococcaceae0.0060.7790.915
speciesProteus_mirabilis-0.0060.7790.915
speciesLactobacillus_salivarius0.0070.7790.915
genusMorganella-0.0060.7830.915
speciesMorganella_morganii-0.0060.7830.915
genusLambdalikevirus-0.0060.7870.915
speciesErysipelotrichaceae_bacterium_6_1_45-0.0060.7880.915
speciesLactococcus_phage_jm2-0.0060.790.915
speciesParabacteroides_sp_D13-0.0060.790.915
speciesBacteroides_finegoldii0.0060.7910.915
speciesBacteroides_salanitronis-0.0060.7990.92
speciesLactococcus_phage_bIL67-0.0060.7990.92
speciesSutterella_parvirubra-0.0060.8070.927
speciesBacteroides_sp_4_3_47FAA-0.0060.8120.93
speciesEggerthella_sp_1_3_56FAA-0.0050.8160.93
speciesBacteroides_sp_1_1_6-0.0050.8160.93
speciesBacteroides_barnesiae-0.0050.8210.932
speciesKlebsiella_sp_MS_92_3-0.0050.8250.932
genusAcidaminococcus-0.0050.8270.932
genusMyoviridae_noname-0.0050.830.932
genusHoldemania-0.0050.8310.932
phylumViruses_noname-0.0050.8320.932
classViruses_noname-0.0050.8320.932
genusTunalikevirus-0.0050.8350.932
speciesRoseburia_intestinalis-0.0050.8360.932
speciesKlebsiella_phage_KP36-0.0050.8410.932
genusLactococcus0.0050.8420.932
speciesEnterobacteria_phage_HK544-0.0040.8460.932
speciesAnaerotruncus_unclassified-0.0040.8490.932
speciesStreptococcus_parasanguinis0.0040.850.932
genusSolobacterium-0.0040.8560.932
speciesSolobacterium_moorei-0.0040.8560.932
speciesStreptococcus_phage_Sfi21-0.0040.8570.932
speciesBacteroides_cellulosilyticus0.0040.8570.932
classClostridia-0.0040.8590.932
orderClostridiales-0.0040.8590.932
phylumBacteroidetes-0.0040.8680.932
classBacteroidia-0.0040.8680.932
orderBacteroidales-0.0040.8680.932
genusCoprobacillus-0.0040.8680.932
speciesOdoribacter_unclassified0.0040.8680.932
speciesBacteroides_dorei0.0040.8690.932
speciesEggerthella_lenta0.0040.8710.932
speciesParabacteroides_sp_20_3-0.0040.8760.935
speciesStreptococcus_vestibularis-0.0030.8840.941
speciesDesulfovibrio_piger-0.0030.8850.941
speciesHoldemania_filiformis-0.0030.8890.943
genusEnterococcus0.0030.8960.946
speciesAlistipes_senegalensis-0.0030.8960.946
familyEnterococcaceae0.0030.9040.951
genusRuminococcus-0.0030.9050.951
speciesBacteroides_caccae-0.0030.9120.957
genusAnaerostipes0.0020.920.962
speciesMethanobrevibacter_unclassified-0.0020.9210.962
phylumEuryarchaeota-0.0020.940.977
speciesRuminococcus_torques-0.0020.940.977
speciesBacteroides_vulgatus0.0020.9470.977
speciesDesulfovibrio_desulfuricans0.0010.9480.977
familyEubacteriaceae-0.0010.9510.977
genusEubacterium-0.0010.9510.977
speciesMethanobrevibacter_smithii0.0010.9510.977
speciesEubacterium_hallii-0.0010.9520.977
speciesCoprococcus_sp_ART55_1-0.0010.9560.979
genusLachnospiraceae_noname0.0010.9630.984
classMethanobacteria-0.0010.9790.993
orderMethanobacteriales-0.0010.9790.993
familyMethanobacteriaceae-0.0010.9790.993
speciesCoprobacillus_unclassified0.0010.980.993
speciesBacteroides_massiliensis-0.0010.9820.993
genusCollinsella0.00.9880.996
genusMethanobrevibacter0.00.9930.997
speciesLachnospiraceae_bacterium_5_1_63FAA0.00.9940.997
speciesBifidobacterium_dentium0.00.9950.997
speciesClostridium_asparagiforme0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.01.22158791786e-050.1784422025951261641.6934
Liver cirrhosisChina1201141.4224074895e-050.0002834378499360.5534815259472478283.2477
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382