MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-09-15 21:40:01 PST
Job id & description: 2112, FimH H10407
Query type: protein
Count queries & homologs: 1, 20
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
AGA03820.12970499Lack 3'-endK07350NOG68182ProteobacteriaEscherichia96.3398.97100.0
AGA03820.12786363CompleteK07350NOG68182ProteobacteriaKlebsiella100.099.6784.05
AGA03820.12795320CompleteK07350NOG68182ProteobacteriaKlebsiella100.099.6783.39
AGA03820.12813336CompleteK07350NOG68182ProteobacteriaKlebsiella95.6795.3584.32
AGA03820.12896422Lack 3'-endK07350NOG68182ProteobacteriaKlebsiella98.33100.082.09
AGA03820.14009067Lack 5'-endK07350NOG68182ProteobacteriaEscherichia77.33100.097.41
AGA03820.13665640Lack 3'-endK07350NOG68182ProteobacteriaKlebsiella76.3392.4381.9
AGA03820.12693481CompleteK07350NOG68182unknownunknown100.0100.059.42
AGA03820.12826005CompleteK07350NOG68182ProteobacteriaEnterobacter100.0100.059.93
AGA03820.12828931CompleteK07350NOG68182ProteobacteriaCitrobacter100.0100.059.6
AGA03820.12696600CompleteK07350NOG68182unknownunknown97.6797.458.0
AGA03820.12600111CompleteK07350NOG68182unknownunknown98.096.1951.82
AGA03820.12339682CompleteK07350NOG145779;NOG68182ProteobacteriaEscherichia98.088.0647.14
AGA03820.12676851CompleteK07350NOG68182ProteobacteriaProteus99.6798.7145.6
AGA03820.12767552CompleteK07350NOG145779ProteobacteriaEscherichia98.097.0446.46
AGA03820.12777238CompleteK07350NOG145779ProteobacteriaProteus95.3395.0543.15
AGA03820.12326615CompleteK07350NOG68182ProteobacteriaEscherichia96.3389.2936.42
AGA03820.12498082CompleteK07350NOG68182ProteobacteriaEscherichia96.3393.1736.42
AGA03820.12511184CompleteK07350NOG68182ProteobacteriaEscherichia99.095.3335.6
AGA03820.12533059CompleteK07350NOG68182ProteobacteriaEscherichia96.3393.1337.62
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.8920.00.0
orderEnterobacteriales0.9470.00.0
familyEnterobacteriaceae0.9470.00.0
genusEscherichia0.9110.00.0
speciesEscherichia_coli0.90.00.0
phylumProteobacteria0.7024.66e-2783.67e-276
genusKlebsiella0.5783.9e-1672.63e-165
speciesKlebsiella_pneumoniae0.5582.93e-1531.73e-151
speciesEscherichia_unclassified0.5535.19e-1502.72e-148
genusPantoea0.4614.5e-991.93e-97
speciesPantoea_unclassified0.4614.5e-991.93e-97
speciesRuminococcus_gnavus0.3581.66e-576.53e-56
genusEnterobacter0.3572.38e-578.64e-56
speciesEnterobacter_cloacae0.3512.53e-558.53e-54
familyFusobacteriaceae0.3275.68e-481.79e-46
genusFusobacterium0.3231.61e-464.75e-45
phylumFusobacteria0.3221.99e-464.94e-45
classFusobacteriia0.3221.99e-464.94e-45
orderFusobacteriales0.3221.99e-464.94e-45
speciesClostridium_nexile0.3177.7e-451.82e-43
genusCitrobacter0.2981.19e-392.67e-38
genusCoprobacillus0.2923.44e-387.38e-37
speciesClostridium_bolteae0.2919.14e-381.88e-36
speciesCitrobacter_unclassified0.2861.67e-363.28e-35
speciesSubdoligranulum_unclassified-0.2853.6e-366.8e-35
speciesCitrobacter_freundii0.2844.95e-368.99e-35
speciesEubacterium_siraeum-0.285.63e-359.84e-34
speciesClostridium_hathewayi0.2797.82e-351.32e-33
genusSubdoligranulum-0.2773.09e-345.03e-33
speciesCoprobacillus_unclassified0.2716.06e-339.53e-32
speciesClostridium_ramosum0.2675.6e-328.53e-31
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2661.19e-311.76e-30
genusButyrivibrio-0.2652.1e-313e-30
speciesAnaerotruncus_unclassified-0.2637.5e-311.04e-29
speciesKlebsiella_oxytoca0.2498.83e-281.19e-26
genusCoprococcus-0.2422.69e-263.53e-25
speciesClostridium_symbiosum0.2423.04e-263.88e-25
speciesEubacterium_ramulus-0.2381.39e-251.73e-24
speciesKlebsiella_unclassified0.2364.71e-255.7e-24
genusEnterococcus0.2332.01e-242.37e-23
familyEnterococcaceae0.2313.99e-244.59e-23
speciesFusobacterium_ulcerans0.2314.21e-244.73e-23
speciesBacteroides_fragilis0.2282.02e-232.22e-22
genusWeissella0.2282.15e-232.31e-22
genusPseudoflavonifractor-0.2264.81e-234.94e-22
speciesPseudoflavonifractor_capillosus-0.2264.81e-234.94e-22
genusBarnesiella-0.2222.1e-222.07e-21
speciesBarnesiella_intestinihominis-0.2222.1e-222.07e-21
genusMegasphaera0.227.48e-227.21e-21
familyClostridiaceae0.2172.35e-212.22e-20
familyRuminococcaceae-0.2162.85e-212.64e-20
genusClostridium0.2164.04e-213.66e-20
speciesBifidobacterium_adolescentis-0.2164.11e-213.66e-20
genusEubacterium-0.2155.12e-214.48e-20
familyEubacteriaceae-0.2155.37e-214.61e-20
speciesSutterella_wadsworthensis-0.2156.51e-215.49e-20
speciesEggerthella_unclassified0.2147.87e-216.52e-20
speciesEubacterium_rectale-0.2131.4e-201.14e-19
classClostridia-0.214.42e-203.48e-19
orderClostridiales-0.214.42e-203.48e-19
speciesClostridiales_bacterium_1_7_47FAA0.215.22e-204.04e-19
speciesClostridium_perfringens0.2081.09e-198.3e-19
speciesCoprococcus_comes-0.2061.9e-191.42e-18
speciesWeissella_confusa0.2062.53e-191.87e-18
speciesButyrivibrio_unclassified-0.2053.25e-192.36e-18
genusSutterella-0.2054.1e-192.93e-18
genusEggerthella0.2036.76e-194.76e-18
speciesLactobacillus_salivarius0.22.17e-181.51e-17
speciesMitsuokella_unclassified-0.22.65e-181.81e-17
speciesFusobacterium_nucleatum0.22.71e-181.83e-17
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1993.63e-182.41e-17
speciesMegasphaera_micronuciformis0.1961.1e-177.21e-17
speciesVeillonella_parvula0.1961.13e-177.31e-17
speciesClostridium_leptum-0.1961.18e-177.53e-17
speciesRoseburia_hominis-0.1961.32e-178.31e-17
familyBacteroidales_noname-0.1952.12e-171.28e-16
genusBacteroidales_noname-0.1952.12e-171.28e-16
speciesBacteroidales_bacterium_ph8-0.1952.12e-171.28e-16
speciesStreptococcus_anginosus0.1942.9e-171.73e-16
genusCoprobacter-0.1933.69e-172.15e-16
speciesCoprobacter_fastidiosus-0.1933.69e-172.15e-16
speciesEnterococcus_faecalis0.1934.56e-172.62e-16
genusMitsuokella-0.1919.67e-175.5e-16
genusFlavonifractor0.1891.52e-168.44e-16
speciesFlavonifractor_plautii0.1891.52e-168.44e-16
speciesFusobacterium_mortiferum0.1891.58e-168.67e-16
speciesMegamonas_unclassified0.1891.63e-168.84e-16
speciesFusobacterium_varium0.1891.86e-169.92e-16
genusMegamonas0.1891.87e-169.92e-16
speciesLactococcus_garvieae0.1892.02e-161.06e-15
speciesClostridium_citroniae0.1882.73e-161.42e-15
speciesDorea_longicatena-0.1873.74e-161.92e-15
familyLeuconostocaceae0.1865.09e-162.58e-15
speciesBacteroides_uniformis-0.1865.75e-162.89e-15
genusDorea-0.1858.4e-164.17e-15
familyRikenellaceae-0.1841.05e-155.11e-15
genusAlistipes-0.1841.05e-155.11e-15
speciesCoprococcus_catus-0.1831.62e-157.8e-15
speciesAlistipes_shahii-0.1831.81e-158.63e-15
genusVeillonella0.1822.3e-151.09e-14
classBacilli0.1822.4e-151.12e-14
orderLactobacillales0.1822.5e-151.16e-14
speciesEnterobacter_aerogenes0.1812.87e-151.32e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.185.1e-152.31e-14
speciesStreptococcus_infantarius0.1771.08e-144.85e-14
speciesWeissella_cibaria0.1771.35e-146.01e-14
speciesEubacterium_hallii-0.1761.63e-147.19e-14
speciesAlistipes_senegalensis-0.1752.39e-141.04e-13
genusRuminococcaceae_noname-0.1743.8e-141.63e-13
speciesRuminococcaceae_bacterium_D16-0.1743.8e-141.63e-13
speciesAnaerostipes_hadrus-0.1734.55e-141.93e-13
speciesLactobacillus_mucosae0.1726.64e-142.8e-13
speciesAlistipes_putredinis-0.1692.17e-139.06e-13
phylumFirmicutes-0.1682.4e-139.94e-13
genusAnaerotruncus-0.1682.49e-131.02e-12
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1673.8e-131.55e-12
speciesC2likevirus_unclassified-0.1656.56e-132.65e-12
genusOdoribacter-0.1656.82e-132.71e-12
speciesAnaerostipes_unclassified0.1656.82e-132.71e-12
phylumSynergistetes0.1657.07e-132.71e-12
classSynergistia0.1657.07e-132.71e-12
orderSynergistales0.1657.07e-132.71e-12
familySynergistaceae0.1657.07e-132.71e-12
speciesDorea_formicigenerans-0.1648.6e-133.27e-12
speciesOscillibacter_unclassified-0.1641.03e-123.89e-12
genusPyramidobacter0.1631.25e-124.65e-12
speciesPyramidobacter_piscolens0.1631.25e-124.65e-12
speciesStreptococcus_thermophilus-0.1621.63e-126.01e-12
genusC2likevirus-0.1621.73e-126.33e-12
speciesCollinsella_aerofaciens-0.1612.21e-128.02e-12
familyOscillospiraceae-0.1586.03e-122.16e-11
genusOscillibacter-0.1586.03e-122.16e-11
speciesBifidobacterium_dentium0.1586.4e-122.27e-11
speciesOdoribacter_splanchnicus-0.1586.92e-122.44e-11
speciesCoprococcus_sp_ART55_1-0.1561.32e-114.62e-11
familyBacillales_noname0.1551.51e-115.2e-11
genusGemella0.1551.51e-115.2e-11
speciesEnterococcus_faecium0.1532.73e-119.34e-11
genusCollinsella-0.1515.26e-111.79e-10
genusClostridiales_noname0.1516.01e-112.03e-10
speciesVeillonella_dispar0.156.38e-112.14e-10
genusMorganella0.1498.39e-112.77e-10
speciesMorganella_morganii0.1498.39e-112.77e-10
speciesButyrivibrio_crossotus-0.1481.34e-104.39e-10
speciesClostridium_clostridioforme0.1471.58e-105.14e-10
phylumVerrucomicrobia-0.1453.22e-101e-09
classVerrucomicrobiae-0.1453.22e-101e-09
orderVerrucomicrobiales-0.1453.22e-101e-09
familyVerrucomicrobiaceae-0.1453.22e-101e-09
genusAkkermansia-0.1453.22e-101e-09
speciesAkkermansia_muciniphila-0.1453.22e-101e-09
genusFaecalibacterium-0.1453.24e-101e-09
speciesFaecalibacterium_prausnitzii-0.1453.24e-101e-09
speciesVeillonella_unclassified0.1443.96e-101.21e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1444.43e-101.35e-09
speciesRuminococcus_lactaris-0.1435.01e-101.52e-09
speciesKlebsiella_sp_MS_92_30.1435.31e-101.6e-09
familySutterellaceae-0.1435.58e-101.67e-09
speciesStreptococcus_salivarius0.1435.73e-101.7e-09
genusSolobacterium0.1426.65e-101.95e-09
speciesSolobacterium_moorei0.1426.65e-101.95e-09
speciesStreptococcus_mitis_oralis_pneumoniae0.1418.43e-102.46e-09
genusBlautia0.1419.27e-102.68e-09
speciesBifidobacterium_pseudocatenulatum0.1419.42e-102.71e-09
speciesPrevotella_buccae0.1381.83e-095.23e-09
speciesRuminococcus_sp_5_1_39BFAA-0.1372.56e-097.28e-09
speciesBacteroides_stercoris0.1373.04e-098.59e-09
speciesMegasphaera_unclassified0.1363.13e-098.79e-09
speciesMegamonas_rupellensis0.1354.35e-091.21e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1354.66e-091.29e-08
familyLactobacillaceae0.1346.25e-091.73e-08
speciesParaprevotella_xylaniphila-0.1337.8e-092.14e-08
genusLactobacillus0.1321.07e-082.92e-08
orderBurkholderiales-0.131.59e-084.31e-08
orderBacillales0.131.65e-084.45e-08
speciesMegamonas_hypermegale0.131.86e-084.99e-08
genusCampylobacter0.1291.92e-085.12e-08
genusPeptostreptococcus0.1291.95e-085.17e-08
familyCampylobacteraceae0.1282.69e-087.09e-08
familyStreptococcaceae0.1282.97e-087.79e-08
genusProteus0.1273.45e-089e-08
classEpsilonproteobacteria0.1274.05e-081.04e-07
orderCampylobacterales0.1274.05e-081.04e-07
familyMyoviridae0.1255.51e-081.41e-07
classBetaproteobacteria-0.1255.7e-081.45e-07
speciesEubacterium_ventriosum-0.1255.76e-081.46e-07
speciesProteus_mirabilis0.1238.97e-082.26e-07
genusPrevotella0.1221.08e-072.71e-07
speciesPrevotella_stercorea0.1221.12e-072.8e-07
speciesStreptococcus_lutetiensis0.1211.71e-074.25e-07
familyPeptostreptococcaceae0.121.75e-074.32e-07
genusStreptococcus0.121.87e-074.57e-07
speciesBacteroides_plebeius0.121.87e-074.57e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.121.92e-074.67e-07
speciesParaprevotella_unclassified-0.122.12e-075.13e-07
familyPorphyromonadaceae-0.1192.28e-075.49e-07
genusParaprevotella-0.1192.52e-076.04e-07
speciesAlistipes_onderdonkii-0.1174.21e-071e-06
speciesVeillonella_atypica0.1164.64e-071.1e-06
speciesBacteroides_intestinalis0.1155.74e-071.35e-06
speciesMethanobrevibacter_smithii-0.1147.42e-071.74e-06
speciesStreptococcus_australis0.1147.73e-071.81e-06
speciesHaemophilus_parainfluenzae0.1148.08e-071.88e-06
genusAggregatibacter0.1138.66e-072e-06
speciesAggregatibacter_segnis0.1139.11e-072.1e-06
genusHaemophilus0.1131.04e-062.38e-06
familyClostridiales_noname0.1121.21e-062.76e-06
speciesBlautia_hydrogenotrophica-0.1121.24e-062.81e-06
genusMethanobrevibacter-0.1121.32e-062.98e-06
orderPasteurellales0.1121.33e-062.98e-06
familyPasteurellaceae0.1121.33e-062.98e-06
speciesGemella_morbillorum0.1111.39e-063.09e-06
speciesParaprevotella_clara-0.1111.56e-063.46e-06
genusRuminococcus-0.1111.62e-063.57e-06
familySiphoviridae-0.111.67e-063.67e-06
phylumEuryarchaeota-0.111.85e-064.04e-06
speciesStreptococcus_pasteurianus0.111.95e-064.24e-06
speciesLactobacillus_fermentum0.1092.26e-064.89e-06
speciesEubacterium_eligens-0.1092.35e-065.06e-06
classMethanobacteria-0.1082.88e-066.12e-06
orderMethanobacteriales-0.1082.88e-066.12e-06
familyMethanobacteriaceae-0.1082.88e-066.12e-06
speciesRoseburia_intestinalis-0.1083.07e-066.5e-06
speciesLactobacillus_sanfranciscensis0.1073.33e-067.02e-06
speciesStreptococcus_gordonii0.1073.46e-067.26e-06
speciesEnterobacteria_phage_HK5440.1064.01e-068.37e-06
genusPeptostreptococcaceae_noname0.1064.19e-068.71e-06
speciesBacteroides_thetaiotaomicron0.1064.55e-069.42e-06
speciesClostridium_bartlettii0.1054.86e-061e-05
speciesOdoribacter_unclassified-0.1055.12e-061.05e-05
familyClostridiales_Family_XI_Incertae_Sedis0.1055.39e-061.1e-05
speciesClostridium_sp_L2_50-0.1046.46e-061.31e-05
speciesPeptostreptococcus_stomatis0.1037.94e-061.61e-05
familyActinomycetaceae0.1029.31e-061.88e-05
familyLachnospiraceae-0.1021.06e-052.13e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.1021.08e-052.16e-05
speciesLactobacillus_amylovorus0.1011.32e-052.63e-05
speciesPrevotella_copri0.11.4e-052.78e-05
speciesRuminococcus_champanellensis-0.11.51e-052.98e-05
speciesParabacteroides_merdae-0.0991.85e-053.64e-05
genusAdlercreutzia-0.0991.96e-053.82e-05
speciesAdlercreutzia_equolifaciens-0.0991.96e-053.82e-05
genusRoseburia-0.0982.05e-053.98e-05
speciesStreptococcus_vestibularis0.0982.25e-054.35e-05
speciesCampylobacter_concisus0.0972.58e-054.95e-05
genusActinomyces0.0972.59e-054.95e-05
speciesCoprococcus_eutactus-0.0972.59e-054.95e-05
speciesLeuconostoc_lactis0.0963.16e-056.01e-05
speciesMegamonas_funiformis0.0963.47e-056.58e-05
speciesBlautia_producta0.0953.56e-056.71e-05
speciesRuminococcus_obeum-0.0953.57e-056.71e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0953.85e-057.21e-05
speciesRothia_mucilaginosa0.0944.64e-058.64e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.0944.65e-058.64e-05
familyPropionibacteriaceae-0.0944.76e-058.81e-05
speciesAlistipes_finegoldii-0.0945.1e-059.4e-05
speciesAlistipes_indistinctus-0.0926.85e-050.000126
speciesAcidaminococcus_intestini0.0918.04e-050.000147
genusAnaerostipes-0.099.13e-050.000166
speciesHaemophilus_paraphrohaemolyticus0.099.57e-050.000174
speciesOlsenella_unclassified-0.099.61e-050.000174
speciesEubacterium_limosum0.099.66e-050.000174
familyVeillonellaceae0.090.00010.000179
speciesEggerthella_lenta0.0890.0001080.000193
speciesRoseburia_unclassified-0.0890.0001150.000205
genusAcidaminococcaceae_unclassified-0.0880.0001330.000236
speciesLactobacillus_plantarum0.0880.0001390.000246
orderCoriobacteriales-0.0870.0001640.000288
familyCoriobacteriaceae-0.0870.0001640.000288
speciesLactobacillus_crispatus0.0860.0001940.000339
speciesPorphyromonas_uenonis0.0860.0001990.000347
speciesClostridium_asparagiforme0.0860.0002040.000354
speciesBacteroides_nordii0.0850.0002240.000387
speciesBacteroides_salyersiae0.0850.0002490.000429
speciesAlistipes_sp_HGB5-0.0840.0002580.000443
genusCatenibacterium-0.0840.0002950.000503
speciesCatenibacterium_mitsuokai-0.0840.0002950.000503
genusBilophila0.0830.0003090.000525
speciesBilophila_unclassified0.0830.0003270.000553
familyMicrococcaceae0.0820.0004010.000676
speciesBifidobacterium_catenulatum-0.0820.0004130.000694
genusRothia0.0810.0004240.00071
genusLambdalikevirus0.0810.0004810.000802
speciesLactobacillus_vaginalis0.080.0005070.000843
speciesCoprobacillus_sp_D60.0790.0005870.000972
speciesBacteroides_sp_3_1_190.0790.000590.000974
orderActinomycetales0.0790.0006320.00104
speciesStreptococcus_sanguinis0.0790.0006580.00108
speciesBifidobacterium_animalis-0.0780.0007570.00124
speciesBacteroides_pectinophilus-0.0780.0007810.00127
genusPeptoniphilus0.0780.0007850.00127
speciesCoprobacillus_sp_29_10.0770.000870.00141
genusMyoviridae_noname0.0760.0009450.00152
speciesClostridium_sp_ATCC_BAA_4420.0760.001030.00165
speciesEubacterium_biforme-0.0750.001110.00178
speciesLactobacillus_acidophilus-0.0750.001240.00198
genusActinobacillus0.0740.001310.00207
speciesActinobacillus_unclassified0.0740.001310.00207
speciesBacteroides_coprocola0.0740.001320.00208
genusPhascolarctobacterium-0.0740.001440.00226
speciesPhascolarctobacterium_succinatutens-0.0740.001440.00226
speciesMegasphaera_elsdenii0.0710.001990.00311
speciesAcidaminococcus_fermentans0.0710.002020.00315
speciesAnaerotruncus_colihominis0.0710.002090.00324
genusParvimonas0.0710.002230.00345
speciesParabacteroides_goldsteinii0.0710.002250.00347
speciesParvimonas_unclassified0.0710.002270.00349
classDeltaproteobacteria0.070.002290.00349
orderDesulfovibrionales0.070.002290.00349
familyDesulfovibrionaceae0.070.002290.00349
speciesLactobacillus_gasseri0.070.002320.00352
speciesBilophila_wadsworthia0.070.002380.0036
speciesBacteroides_barnesiae-0.0690.003010.00454
genusOlsenella-0.0690.003020.00454
genusPorphyromonas0.0680.003040.00456
speciesLactobacillus_oris0.0680.003250.00485
genusDialister-0.0680.003260.00485
speciesErysipelotrichaceae_bacterium_21_3-0.0680.003320.00493
familyAcidaminococcaceae-0.0680.003440.00509
speciesBacteroides_dorei-0.0670.003810.00562
speciesPropionibacterium_freudenreichii-0.0670.0040.00588
speciesBifidobacterium_breve0.0660.004530.00664
speciesStreptococcus_mutans0.0660.004560.00666
speciesMethanobrevibacter_unclassified-0.0650.004720.00688
speciesParabacteroides_sp_D13-0.0650.00480.00697
familyOxalobacteraceae-0.0650.004890.00708
speciesOscillibacter_sp_KLE_1745-0.0650.00520.00751
speciesLactococcus_phage_P680-0.0650.005240.00754
genusOxalobacter-0.0640.005290.00757
speciesOxalobacter_formigenes-0.0640.005290.00757
speciesBacteroides_xylanisolvens0.0640.005360.00764
genusSutterellaceae_unclassified-0.0640.005530.00786
speciesRoseburia_inulinivorans-0.0640.005660.00802
speciesHaemophilus_sputorum0.0640.005950.00838
speciesCollinsella_tanakaei0.0640.005950.00838
classErysipelotrichia0.0630.006470.00904
orderErysipelotrichales0.0630.006470.00904
familyErysipelotrichaceae0.0630.006470.00904
speciesAlistipes_sp_AP11-0.0630.006610.0092
speciesBacteroides_finegoldii0.0620.0070.00972
speciesBacteroides_oleiciplenus0.0620.007540.0104
genusLeuconostoc0.0620.007710.0106
speciesErysipelotrichaceae_bacterium_2_2_44A0.0610.008270.0114
genusSiphoviridae_noname-0.060.009490.013
speciesLactococcus_phage_936_sensu_lato-0.060.009640.0132
speciesDialister_invisus-0.0590.01040.0142
orderAeromonadales0.0590.01060.0144
speciesOscillibacter_sp_KLE_1728-0.0590.01080.0146
speciesPorphyromonas_asaccharolytica0.0580.01220.0165
speciesAlistipes_unclassified-0.0570.01320.0178
speciesAcidaminococcus_unclassified-0.0570.01320.0178
speciesBacteroides_sp_2_1_22-0.0570.01360.0182
speciesBacteroides_sp_1_1_6-0.0570.01380.0185
speciesHoldemania_unclassified-0.0570.01450.0193
genusBifidobacterium-0.0560.01470.0195
speciesLachnospiraceae_bacterium_1_1_57FAA0.0560.01470.0195
speciesBifidobacterium_angulatum-0.0560.01530.0202
orderCaudovirales-0.0560.01570.0207
speciesPrevotella_bivia0.0560.01630.0214
genusPropionibacterium-0.0540.01870.0245
orderBifidobacteriales-0.0540.02050.0267
familyBifidobacteriaceae-0.0540.02050.0267
speciesRuminococcus_bromii-0.0530.02140.0278
genusParabacteroides-0.0530.02260.0293
speciesDesulfovibrio_piger-0.0510.02720.0352
speciesSubdoligranulum_sp_4_3_54A2FAA0.050.02930.0378
familyBacteroidaceae0.050.03010.0386
genusBacteroides0.050.03010.0386
speciesBifidobacterium_longum-0.0470.04180.0535
genusTunalikevirus0.0470.04320.0551
speciesBacteroides_cellulosilyticus-0.0460.04780.0608
phylumActinobacteria-0.0460.04870.0616
classActinobacteria-0.0460.04870.0616
speciesSutterella_parvirubra0.0450.05130.0647
speciesLactococcus_phage_bIL67-0.0450.05170.0651
speciesBacteroides_salanitronis-0.0440.05450.0684
speciesErysipelotrichaceae_bacterium_6_1_450.0430.06130.0767
speciesEubacterium_dolichum0.0430.06190.0773
phylumViruses_noname-0.0430.06380.0792
classViruses_noname-0.0430.06380.0792
speciesDesulfovibrio_desulfuricans-0.0420.06960.0862
speciesLactococcus_lactis-0.0420.07130.0881
speciesLactobacillus_reuteri0.0410.07930.0977
speciesLactococcus_phage_jm2-0.040.0810.0996
speciesLactobacillus_ruminis-0.0390.08840.108
speciesParabacteroides_unclassified0.0390.09150.112
speciesKlebsiella_phage_KP360.0390.09210.112
speciesEubacterium_cylindroides-0.0390.09470.115
speciesPeptostreptococcus_anaerobius0.0390.09510.115
classNegativicutes0.0380.1030.124
orderSelenomonadales0.0380.1030.124
speciesTuricibacter_unclassified-0.0360.1190.143
speciesBacteroides_eggerthii0.0350.1320.159
speciesHoldemania_filiformis-0.0340.1380.165
phylumBacteroidetes-0.0340.140.167
speciesMitsuokella_multacida-0.0340.140.167
classBacteroidia-0.0340.1410.167
orderBacteroidales-0.0340.1410.167
genusAcidaminococcus0.0330.1570.186
orderPseudomonadales0.0320.1650.195
genusErysipelotrichaceae_noname0.0320.1680.198
speciesParabacteroides_johnsonii0.030.190.223
genusTuricibacter-0.030.1980.232
speciesLactobacillus_casei_paracasei-0.030.2010.235
genusBurkholderiales_noname0.0290.2080.241
speciesStreptococcus_parasanguinis0.0290.2080.241
speciesBurkholderiales_bacterium_1_1_470.0290.2080.241
genusDesulfovibrio-0.0290.2160.25
familyPodoviridae0.0280.2230.257
speciesHoldemania_sp_AP20.0280.2290.264
familyBurkholderiales_noname0.0270.2390.274
speciesPeptostreptococcaceae_noname_unclassified-0.0270.2410.276
speciesClostridium_spiroforme-0.0260.2590.296
genusButyricicoccus0.0250.2790.317
speciesButyricicoccus_pullicaecorum0.0250.2790.317
genusGordonibacter-0.0230.3210.362
speciesGordonibacter_pamelaeae-0.0230.3210.362
speciesBacteroides_vulgatus-0.0230.3210.362
speciesLactococcus_phage_phi7-0.0230.3230.364
speciesRuminococcus_sp_JC3040.0230.3280.369
genusButyricimonas-0.0220.3480.389
speciesButyricimonas_synergistica-0.0220.3480.389
speciesLactobacillus_delbrueckii-0.0220.350.391
speciesClostridium_sp_KLE_1755-0.0220.3510.391
speciesSlackia_piriformis-0.0210.3540.393
speciesBacteroides_coprophilus0.0210.3560.394
speciesCollinsella_intestinalis0.0210.3570.395
genusParasutterella0.020.3980.437
speciesCoriobacteriaceae_bacterium_phI-0.020.3980.437
speciesParasutterella_excrementihominis0.020.3980.437
speciesDialister_succinatiphilus-0.0190.4190.459
familyViruses_noname0.0180.4260.464
genusViruses_noname0.0180.4260.464
orderViruses_noname-0.0180.4330.471
genusMethanosphaera-0.0170.4530.49
speciesMethanosphaera_stadtmanae-0.0170.4530.49
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0170.460.497
speciesDorea_unclassified-0.0170.4640.5
genusCoriobacteriaceae_noname-0.0170.4750.511
speciesParabacteroides_sp_20_3-0.0160.480.515
speciesRuminococcus_torques0.0160.4940.529
genusSlackia0.0160.4990.533
speciesEggerthella_sp_1_3_56FAA-0.0150.5050.538
genusClostridiaceae_noname0.0140.5390.571
speciesClostridiaceae_bacterium_JC1180.0140.5390.571
speciesBacteroides_massiliensis0.0140.540.571
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0130.560.591
genusLactococcus0.0130.5780.609
speciesErysipelotrichaceae_bacterium_3_1_530.0130.5880.618
speciesLactobacillus_rhamnosus0.0120.5950.624
genusHoldemania-0.0120.6090.635
speciesBacteroides_clarus0.0120.6090.635
speciesBifidobacterium_bifidum0.0120.6090.635
speciesBacteroides_ovatus-0.0090.6890.716
genusStaphylococcus-0.0080.7140.741
familyPrevotellaceae0.0080.7180.743
speciesTuricibacter_sanguinis-0.0070.7660.791
speciesOdoribacter_laneus0.0060.7930.817
speciesBacteroides_faecis-0.0050.8140.837
speciesRuminococcus_callidus0.0050.8210.841
speciesBacteroides_fluxus-0.0050.8220.841
genusSuccinatimonas0.0050.8270.841
speciesSuccinatimonas_hippei0.0050.8270.841
speciesBacteroides_sp_4_3_47FAA-0.0050.8270.841
speciesBacteroides_caccae0.0050.8320.845
speciesParabacteroides_distasonis0.0040.8630.874
speciesEubacterium_sp_3_1_310.0030.8850.894
speciesStreptococcus_phage_Sfi21-0.0020.9230.93
familyStaphylococcaceae-0.0020.9240.93
genusLachnospiraceae_noname-0.0020.9320.936
speciesCollinsella_unclassified0.0010.9540.956
familySuccinivibrionaceae0.00.9910.991
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.0128574383270.004169979663779.29758385805e-141540.504802
Crohns diseaseSpain17660.0465452367630.006154782060610.000667775663888369412.2826
Liver cirrhosisChina1201140.04641473148090.00957497640180.00155022398942793426.6519
Colorectal cancerAustria64350.08040771371420.01924699896470.01417974357559653.26499
Type II diabetesChina1831850.03800213767910.03127717044710.2832148719561569951.8821
ObesityDenmark1691230.006071011201750.01480344648870.3086920238091431347.0652
Ulcerative colitisSpain78660.002030256289250.006154782060610.7865206641112544083.9216
Type II diabetesSweden53920.01051274651270.01236706799920.9160717912682730092.4484
Rheumatoid arthritisChina127980.02200394930040.01477793237080.9695186623832925797.5656
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382