MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-09-15 21:58:02 PST
Job id & description: 2113, CFA/I H10407
Query type: protein
Count queries & homologs: 1, 11
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
AAB22177.15590829CompleteunknownNOG74789ProteobacteriaEscherichia97.2884.1252.08
AAB22177.15692924CompleteunknownNOG74789ProteobacteriaEscherichia97.9684.3438.62
AAB22177.15694869CompleteunknownNOG74789ProteobacteriaEscherichia97.9684.3436.11
AAB22177.15166609Lack 5'-endunknownNOG74789ProteobacteriaEscherichia97.9676.0935.42
AAB22177.15500716CompleteunknownNOG74789Proteobacteriaunknown97.9679.6538.89
AAB22177.15520603CompleteunknownNOG74789ProteobacteriaEnterobacter97.9679.6537.5
AAB22177.15648726CompleteunknownNOG74789Proteobacteriaunknown97.9681.5537.5
AAB22177.15769178CompleteunknownNOG74789unknownunknown97.2884.7635.42
AAB22177.15503007CompleteunknownNOG74789unknownunknown97.2880.8135.17
AAB22177.15868637CompleteunknownNOG74789ProteobacteriaEscherichia94.5680.031.65
AAB22177.15289895CompleteunknownNOG74789unknownunknown95.2471.5134.04
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
orderEnterobacteriales0.631.18e-2072.78e-205
familyEnterobacteriaceae0.631.18e-2072.78e-205
genusEscherichia0.6256.16e-2039.69e-201
classGammaproteobacteria0.6071.13e-1881.33e-186
speciesEscherichia_coli0.6063.35e-1883.16e-186
phylumProteobacteria0.4734.85e-1053.82e-103
genusKlebsiella0.4483.41e-932.3e-91
speciesKlebsiella_pneumoniae0.4251.07e-826.31e-81
speciesEscherichia_unclassified0.4143.82e-782e-76
genusEnterobacter0.47.97e-733.76e-71
speciesEnterobacter_cloacae0.395.67e-692.43e-67
genusCitrobacter0.3438.49e-533.34e-51
speciesCitrobacter_freundii0.3345.51e-502e-48
speciesCitrobacter_unclassified0.3346.98e-502.35e-48
familyFusobacteriaceae0.3068.03e-422.53e-40
genusPantoea0.3069.49e-422.63e-40
speciesPantoea_unclassified0.3069.49e-422.63e-40
phylumFusobacteria0.3042.7e-416.14e-40
classFusobacteriia0.3042.7e-416.14e-40
orderFusobacteriales0.3042.7e-416.14e-40
genusFusobacterium0.3042.73e-416.14e-40
speciesRuminococcus_gnavus0.2877.02e-371.51e-35
speciesClostridium_nexile0.2843.75e-367.7e-35
genusWeissella0.2553.58e-297.04e-28
speciesSubdoligranulum_unclassified-0.2521.64e-283.1e-27
speciesEubacterium_siraeum-0.2481.29e-272.34e-26
genusSubdoligranulum-0.2471.7e-272.97e-26
speciesWeissella_confusa0.2448.6e-271.45e-25
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2422.7e-264.39e-25
speciesKlebsiella_oxytoca0.2331.43e-242.25e-23
speciesClostridium_perfringens0.2331.84e-242.8e-23
genusCoprobacillus0.2181.72e-212.54e-20
speciesKlebsiella_unclassified0.2156.18e-218.84e-20
speciesCoprobacillus_unclassified0.2131.43e-201.99e-19
familyEnterococcaceae0.2121.56e-202.05e-19
speciesClostridium_bolteae0.2121.56e-202.05e-19
genusEnterococcus0.2121.61e-202.05e-19
speciesVeillonella_parvula0.2112.42e-203.01e-19
speciesClostridium_symbiosum0.2062.6e-193.15e-18
speciesMegamonas_unclassified0.2053.44e-194.06e-18
genusMegamonas0.2054.12e-194.74e-18
speciesClostridium_ramosum0.2044.34e-194.88e-18
speciesStreptococcus_infantarius0.2036.31e-196.93e-18
speciesClostridium_hathewayi0.2036.67e-197.16e-18
speciesFusobacterium_nucleatum0.2011.46e-181.53e-17
speciesEnterobacter_aerogenes0.2011.78e-181.81e-17
genusVeillonella0.2011.8e-181.81e-17
speciesFusobacterium_ulcerans0.2011.94e-181.91e-17
speciesLactobacillus_salivarius0.1994.48e-184.32e-17
speciesWeissella_cibaria0.1984.76e-184.49e-17
familyLeuconostocaceae0.1978.25e-187.64e-17
genusButyrivibrio-0.1961.07e-179.71e-17
speciesMegasphaera_micronuciformis0.1961.41e-171.26e-16
speciesAnaerotruncus_unclassified-0.1942.57e-172.25e-16
genusMegasphaera0.1924.74e-174.07e-16
genusPseudoflavonifractor-0.1891.99e-161.65e-15
speciesPseudoflavonifractor_capillosus-0.1891.99e-161.65e-15
genusCoprococcus-0.1882.77e-162.25e-15
speciesBifidobacterium_adolescentis-0.1874.06e-163.25e-15
speciesLactococcus_garvieae0.1864.5e-163.54e-15
speciesLactobacillus_mucosae0.1856.64e-165.14e-15
speciesFusobacterium_mortiferum0.1856.81e-165.18e-15
familyBacteroidales_noname-0.1849.02e-166.55e-15
genusBacteroidales_noname-0.1849.02e-166.55e-15
speciesBacteroidales_bacterium_ph8-0.1849.02e-166.55e-15
classBacilli0.1822.22e-151.59e-14
speciesFusobacterium_varium0.1812.88e-152.03e-14
orderLactobacillales0.1813.68e-152.55e-14
speciesStreptococcus_anginosus0.1771.31e-148.96e-14
speciesVeillonella_unclassified0.1761.5e-141.01e-13
speciesEubacterium_ramulus-0.1752.27e-141.51e-13
speciesClostridium_leptum-0.1752.78e-141.82e-13
speciesEnterococcus_faecalis0.1743.45e-142.23e-13
genusPrevotella0.1735.83e-143.72e-13
speciesBacteroides_fragilis0.171.22e-137.68e-13
speciesVeillonella_dispar0.171.57e-139.75e-13
genusBarnesiella-0.1682.75e-131.66e-12
speciesBarnesiella_intestinihominis-0.1682.75e-131.66e-12
familyRuminococcaceae-0.1683.05e-131.82e-12
speciesDorea_longicatena-0.1664.32e-132.44e-12
phylumVerrucomicrobia-0.1664.45e-132.44e-12
classVerrucomicrobiae-0.1664.45e-132.44e-12
orderVerrucomicrobiales-0.1664.45e-132.44e-12
familyVerrucomicrobiaceae-0.1664.45e-132.44e-12
genusAkkermansia-0.1664.45e-132.44e-12
speciesAkkermansia_muciniphila-0.1664.45e-132.44e-12
speciesCoprococcus_comes-0.1664.73e-132.57e-12
familyRikenellaceae-0.1657.38e-133.91e-12
genusAlistipes-0.1657.38e-133.91e-12
speciesHaemophilus_parainfluenzae0.1657.52e-133.94e-12
genusHaemophilus0.1631.38e-127.16e-12
speciesEubacterium_hallii-0.1631.49e-127.64e-12
orderPasteurellales0.1621.72e-128.64e-12
familyPasteurellaceae0.1621.72e-128.64e-12
speciesEnterococcus_faecium0.1621.82e-129.04e-12
speciesBacteroides_stercoris0.1621.85e-129.1e-12
genusDorea-0.1622.01e-129.78e-12
speciesRoseburia_hominis-0.1622.12e-121.02e-11
speciesLachnospiraceae_bacterium_3_1_46FAA-0.163.19e-121.52e-11
speciesPrevotella_copri0.1594.11e-121.94e-11
genusSutterella-0.1594.44e-122.07e-11
speciesEubacterium_rectale-0.1585.85e-122.71e-11
genusEubacterium-0.1586.07e-122.78e-11
familyEubacteriaceae-0.1586.37e-122.89e-11
speciesBacteroides_plebeius0.1577.69e-123.46e-11
speciesVeillonella_atypica0.1579.01e-124.01e-11
speciesEggerthella_unclassified0.1561.03e-114.54e-11
speciesClostridium_citroniae0.1561.19e-115.2e-11
speciesAlistipes_senegalensis-0.1561.27e-115.5e-11
speciesSutterella_wadsworthensis-0.1561.32e-115.66e-11
classClostridia-0.1551.38e-115.82e-11
orderClostridiales-0.1551.38e-115.82e-11
speciesBifidobacterium_dentium0.1551.65e-116.89e-11
familyClostridiaceae0.1541.9e-117.87e-11
genusFlavonifractor0.1542.05e-118.34e-11
speciesFlavonifractor_plautii0.1542.05e-118.34e-11
speciesClostridiales_bacterium_1_7_47FAA0.1532.7e-111.09e-10
speciesCollinsella_aerofaciens-0.1524.01e-111.6e-10
speciesStreptococcus_salivarius0.1524.06e-111.61e-10
genusClostridium0.1524.36e-111.71e-10
speciesBacteroides_uniformis-0.1514.96e-111.93e-10
speciesOscillibacter_unclassified-0.1515.89e-112.28e-10
speciesStreptococcus_mitis_oralis_pneumoniae0.1516.08e-112.33e-10
speciesCoprococcus_catus-0.156.71e-112.55e-10
speciesMitsuokella_unclassified-0.1481.33e-105.02e-10
speciesC2likevirus_unclassified-0.1471.49e-105.58e-10
familyOscillospiraceae-0.1471.55e-105.72e-10
genusOscillibacter-0.1471.55e-105.72e-10
familyPeptostreptococcaceae0.1471.58e-105.78e-10
speciesPrevotella_buccae0.1471.69e-106.14e-10
genusEggerthella0.1452.73e-109.84e-10
speciesButyrivibrio_unclassified-0.1443.48e-101.24e-09
genusPyramidobacter0.1444.36e-101.54e-09
speciesPyramidobacter_piscolens0.1444.36e-101.54e-09
speciesStreptococcus_thermophilus-0.1444.48e-101.55e-09
genusAnaerotruncus-0.1444.51e-101.55e-09
genusCoprobacter-0.1444.52e-101.55e-09
speciesCoprobacter_fastidiosus-0.1444.52e-101.55e-09
familyBacillales_noname0.1435.08e-101.71e-09
genusGemella0.1435.08e-101.71e-09
phylumSynergistetes0.1435.28e-101.73e-09
classSynergistia0.1435.28e-101.73e-09
orderSynergistales0.1435.28e-101.73e-09
familySynergistaceae0.1435.28e-101.73e-09
genusC2likevirus-0.1426.29e-102.05e-09
genusCollinsella-0.1426.98e-102.26e-09
speciesMegamonas_rupellensis0.1418.54e-102.74e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.141.14e-093.64e-09
speciesClostridium_bartlettii0.141.36e-094.31e-09
genusSolobacterium0.1391.67e-095.22e-09
speciesSolobacterium_moorei0.1391.67e-095.22e-09
speciesAnaerostipes_hadrus-0.1381.94e-096.02e-09
familyStreptococcaceae0.1363.46e-091.07e-08
speciesLeuconostoc_lactis0.1354.04e-091.24e-08
genusPeptostreptococcaceae_noname0.1354.3e-091.31e-08
speciesBifidobacterium_pseudocatenulatum0.1354.38e-091.33e-08
speciesMegamonas_hypermegale0.1354.9e-091.47e-08
speciesPrevotella_stercorea0.1345.47e-091.63e-08
speciesLachnospiraceae_bacterium_2_1_46FAA0.1345.52e-091.64e-08
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1345.91e-091.74e-08
genusMitsuokella-0.1346.35e-091.86e-08
speciesDorea_formicigenerans-0.1337.39e-092.15e-08
orderBacillales0.1311.36e-083.94e-08
speciesStreptococcus_lutetiensis0.1311.44e-084.14e-08
speciesStreptococcus_pasteurianus0.131.53e-084.38e-08
genusRuminococcaceae_noname-0.131.59e-084.49e-08
speciesRuminococcaceae_bacterium_D16-0.131.59e-084.49e-08
genusLactobacillus0.131.66e-084.66e-08
speciesEnterobacteria_phage_HK5440.1283.08e-088.6e-08
genusStreptococcus0.1273.29e-089.13e-08
familyLactobacillaceae0.1273.49e-089.63e-08
speciesAnaerostipes_unclassified0.1264.25e-081.17e-07
speciesKlebsiella_sp_MS_92_30.1264.48e-081.22e-07
speciesAlistipes_putredinis-0.1265.16e-081.4e-07
familyMyoviridae0.1255.54e-081.49e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1246.89e-081.85e-07
speciesBacteroides_intestinalis0.1247.66e-082.04e-07
genusPeptostreptococcus0.1238.53e-082.26e-07
speciesRuminococcus_lactaris-0.1238.81e-082.32e-07
speciesStreptococcus_australis0.1239.96e-082.61e-07
speciesAlistipes_shahii-0.1221.13e-072.95e-07
speciesLactobacillus_crispatus0.121.73e-074.49e-07
speciesBacteroides_salyersiae0.1192.69e-076.94e-07
genusOdoribacter-0.1174.32e-071.11e-06
genusLambdalikevirus0.1148.23e-072.1e-06
speciesCoprococcus_sp_ART55_1-0.1139.23e-072.34e-06
familyVeillonellaceae0.1139.72e-072.45e-06
speciesMegasphaera_unclassified0.1131.07e-062.69e-06
speciesButyrivibrio_crossotus-0.1121.18e-062.95e-06
speciesEubacterium_ventriosum-0.1121.28e-063.18e-06
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1121.33e-063.29e-06
speciesLactobacillus_fermentum0.1111.65e-064.06e-06
genusMethanobrevibacter-0.111.7e-064.16e-06
speciesMethanobrevibacter_smithii-0.111.77e-064.31e-06
classMethanobacteria-0.111.83e-064.38e-06
orderMethanobacteriales-0.111.83e-064.38e-06
familyMethanobacteriaceae-0.111.83e-064.38e-06
phylumEuryarchaeota-0.1092.1e-065.01e-06
genusBlautia0.1092.46e-065.83e-06
speciesLactobacillus_sanfranciscensis0.1082.65e-066.25e-06
speciesBacteroides_coprocola0.1082.71e-066.36e-06
speciesAggregatibacter_segnis0.1082.77e-066.47e-06
phylumFirmicutes-0.1082.83e-066.58e-06
speciesAlistipes_indistinctus-0.1064.81e-061.11e-05
speciesAlistipes_onderdonkii-0.1055.58e-061.28e-05
speciesOdoribacter_splanchnicus-0.1055.82e-061.33e-05
speciesOdoribacter_unclassified-0.1046.39e-061.46e-05
familyPorphyromonadaceae-0.1046.61e-061.5e-05
speciesBacteroides_thetaiotaomicron0.1037.94e-061.79e-05
speciesMegamonas_funiformis0.1029.89e-062.22e-05
classEpsilonproteobacteria0.1011.12e-052.49e-05
orderCampylobacterales0.1011.12e-052.49e-05
speciesPeptostreptococcus_stomatis0.1011.15e-052.55e-05
familySiphoviridae-0.11.36e-053e-05
genusCampylobacter0.11.42e-053.12e-05
speciesRuminococcus_sp_5_1_39BFAA-0.11.49e-053.26e-05
familyCampylobacteraceae0.0991.96e-054.26e-05
speciesBacteroides_pectinophilus-0.0982.03e-054.4e-05
speciesCampylobacter_concisus0.0982.12e-054.57e-05
genusProteus0.0982.23e-054.78e-05
speciesBacteroides_nordii0.0982.34e-055e-05
orderCoriobacteriales-0.0972.82e-055.97e-05
familyCoriobacteriaceae-0.0972.82e-055.97e-05
speciesStreptococcus_vestibularis0.0963.06e-056.45e-05
familySutterellaceae-0.0963.43e-057.2e-05
genusAggregatibacter0.0953.56e-057.44e-05
speciesBlautia_hydrogenotrophica-0.0935.8e-050.000121
speciesStreptococcus_gordonii0.0926.25e-050.000129
genusClostridiales_noname0.0926.34e-050.000131
speciesGemella_morbillorum0.0917.61e-050.000156
orderBurkholderiales-0.090.0001020.000208
speciesStreptococcus_sanguinis0.0890.0001110.000226
speciesLachnospiraceae_bacterium_1_1_57FAA0.0890.0001160.000235
speciesClostridium_sp_L2_50-0.0890.0001190.00024
speciesAcidaminococcus_intestini0.0890.000120.000241
genusMyoviridae_noname0.0880.0001350.00027
speciesLactobacillus_vaginalis0.0870.0001640.000327
speciesBacteroides_oleiciplenus0.0860.0001930.000383
classBetaproteobacteria-0.0860.0002030.000401
speciesRuminococcus_champanellensis-0.0850.000250.000492
speciesLactobacillus_oris0.0840.0002830.000554
speciesProteus_mirabilis0.0830.0003290.000642
genusMorganella0.0830.000340.000658
speciesMorganella_morganii0.0830.000340.000658
speciesBlautia_producta0.0820.0003660.000705
familyPrevotellaceae0.080.0005420.00104
speciesLactobacillus_plantarum0.080.0005710.00109
genusAdlercreutzia-0.0780.000690.00131
speciesAdlercreutzia_equolifaciens-0.0780.000690.00131
speciesBacteroides_sp_3_1_190.0780.000790.00149
speciesClostridium_asparagiforme0.0770.00080.0015
familyClostridiales_Family_XI_Incertae_Sedis0.0770.0008390.00157
genusRuminococcus-0.0770.0008770.00164
genusFaecalibacterium-0.0760.001040.00193
speciesFaecalibacterium_prausnitzii-0.0760.001040.00193
speciesPropionibacterium_freudenreichii-0.0750.00110.00202
speciesBifidobacterium_angulatum-0.0750.00110.00202
speciesParaprevotella_xylaniphila-0.0750.001120.00205
speciesClostridium_clostridioforme0.0750.001130.00206
speciesAlistipes_finegoldii-0.0750.001160.00211
speciesMegasphaera_elsdenii0.0740.001380.0025
speciesLactobacillus_amylovorus0.0740.001440.00259
speciesLactobacillus_gasseri0.0730.00160.00286
speciesParabacteroides_goldsteinii0.0730.00160.00286
speciesPorphyromonas_uenonis0.0730.001620.00289
speciesClostridium_sp_ATCC_BAA_4420.0730.001660.00295
speciesLachnospiraceae_bacterium_1_4_56FAA0.0720.001720.00304
speciesBifidobacterium_catenulatum-0.0720.001770.00312
speciesCoprococcus_eutactus-0.0720.001820.00319
speciesBacteroides_xylanisolvens0.0720.001870.00327
genusAnaerostipes-0.0720.001950.0034
speciesParaprevotella_unclassified-0.0710.002050.00356
speciesOlsenella_unclassified-0.0710.002120.00367
speciesLachnospiraceae_bacterium_5_1_57FAA0.070.002290.00394
genusAcidaminococcaceae_unclassified-0.070.00250.00429
genusParaprevotella-0.070.002530.00433
familyClostridiales_noname0.0690.002690.00458
speciesBacteroides_massiliensis0.0690.002720.00462
speciesAlistipes_sp_AP11-0.0690.002920.00492
speciesBacteroides_finegoldii0.0690.002920.00492
speciesBacteroides_sp_1_1_6-0.0690.002940.00494
speciesStreptococcus_mutans0.0680.003250.00544
genusPhascolarctobacterium-0.0680.003490.0058
speciesPhascolarctobacterium_succinatutens-0.0680.003490.0058
genusCatenibacterium-0.0670.003520.00581
speciesCatenibacterium_mitsuokai-0.0670.003520.00581
familyPropionibacteriaceae-0.0670.003720.0061
speciesRoseburia_unclassified-0.0670.003720.0061
speciesRuminococcus_obeum-0.0670.003910.00639
speciesParaprevotella_clara-0.0660.004230.00688
speciesBacteroides_eggerthii0.0660.004550.00738
speciesAlistipes_sp_HGB5-0.0650.004670.00755
genusActinobacillus0.0650.004760.00764
speciesActinobacillus_unclassified0.0650.004760.00764
speciesEubacterium_limosum0.0650.005040.00806
genusPeptoniphilus0.0630.006020.0096
speciesDesulfovibrio_piger-0.0630.006230.0099
speciesErysipelotrichaceae_bacterium_21_3-0.0630.006360.0101
speciesBifidobacterium_animalis-0.0620.00730.0115
speciesDialister_invisus-0.0620.007440.0117
speciesBacteroides_cellulosilyticus-0.0610.008080.0126
speciesHaemophilus_sputorum0.0610.008090.0126
speciesEubacterium_biforme-0.0610.008210.0128
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0610.008390.013
genusLeuconostoc0.0610.00870.0135
classNegativicutes0.0610.008780.0135
orderSelenomonadales0.0610.008780.0135
speciesOscillibacter_sp_KLE_1745-0.060.009060.0139
familyAcidaminococcaceae-0.060.009650.0147
speciesHaemophilus_paraphrohaemolyticus0.0590.01030.0157
speciesPrevotella_bivia0.0590.01130.0171
speciesMethanobrevibacter_unclassified-0.0570.01290.0195
familyViruses_noname0.0570.01330.02
genusViruses_noname0.0570.01330.02
genusPropionibacterium-0.0570.01360.0204
phylumActinobacteria-0.0570.01370.0204
classActinobacteria-0.0570.01370.0204
genusParvimonas0.0570.01420.021
speciesErysipelotrichaceae_bacterium_2_2_44A0.0570.01420.021
speciesParvimonas_unclassified0.0560.01460.0215
speciesBacteroides_coprophilus0.0560.01470.0216
familyActinomycetaceae0.0560.01520.0223
genusBifidobacterium-0.0560.01550.0227
familyMicrococcaceae0.0560.01580.023
speciesRothia_mucilaginosa0.0560.0160.0232
speciesLactobacillus_reuteri0.0560.01630.0236
familyLachnospiraceae-0.0550.01660.024
genusRothia0.0550.01670.024
speciesLactobacillus_acidophilus-0.0550.01740.025
speciesAlistipes_unclassified-0.0550.01770.0253
orderBifidobacteriales-0.0540.02060.0293
familyBifidobacteriaceae-0.0540.02060.0293
genusOlsenella-0.0530.02080.0295
orderCaudovirales-0.0530.02220.0314
speciesBacteroides_faecis0.0520.02560.0361
speciesBifidobacterium_longum-0.0510.02670.0375
speciesBacteroides_sp_2_1_22-0.0510.02730.0382
genusSiphoviridae_noname-0.0510.02880.0402
genusDesulfovibrio-0.050.02910.0405
speciesAcidaminococcus_fermentans0.050.02970.0412
genusDialister-0.050.03110.043
genusActinomyces0.050.03140.0433
speciesAcidaminococcus_unclassified-0.050.03170.0436
speciesParabacteroides_merdae-0.0490.03250.0446
speciesErysipelotrichaceae_bacterium_3_1_530.0490.03550.0486
phylumViruses_noname-0.0490.03590.0488
classViruses_noname-0.0490.03590.0488
speciesStreptococcus_parasanguinis0.0480.03960.0537
speciesEubacterium_eligens-0.0470.04170.0564
orderActinomycetales0.0470.04240.0572
genusLactococcus0.0470.04410.0593
speciesHoldemania_filiformis-0.0460.0450.0603
speciesAnaerotruncus_colihominis0.0460.04750.0635
speciesEubacterium_dolichum0.0460.04880.0651
speciesCoprobacillus_sp_D60.0450.04940.0657
speciesBifidobacterium_breve0.0450.05270.0699
genusParabacteroides-0.0450.05310.0702
speciesEubacterium_cylindroides-0.0420.06710.0885
orderAeromonadales0.0420.06730.0885
speciesDesulfovibrio_desulfuricans-0.0420.06930.0909
speciesCoprobacillus_sp_29_10.040.08040.105
speciesPeptostreptococcus_anaerobius0.040.08720.113
speciesBacteroides_dorei-0.040.08720.113
familyBacteroidaceae0.0390.09150.118
genusBacteroides0.0390.09150.118
speciesLactococcus_phage_936_sensu_lato-0.0390.09280.12
speciesBacteroides_barnesiae-0.0380.09740.125
speciesEggerthella_lenta0.0380.09990.128
speciesParabacteroides_johnsonii0.0380.1020.13
genusBurkholderiales_noname0.0370.110.14
speciesBurkholderiales_bacterium_1_1_470.0370.110.14
speciesParabacteroides_sp_D13-0.0360.1180.15
familyBurkholderiales_noname0.0360.1190.151
familyOxalobacteraceae-0.0360.120.151
speciesTuricibacter_unclassified-0.0360.120.151
genusOxalobacter-0.0360.1220.152
speciesOxalobacter_formigenes-0.0360.1220.152
speciesSubdoligranulum_sp_4_3_54A2FAA0.0360.1220.152
speciesRoseburia_intestinalis-0.0350.1260.157
speciesOscillibacter_sp_KLE_1728-0.0350.1360.169
speciesBacteroides_clarus0.0340.1370.17
genusRoseburia-0.0340.1390.172
speciesCollinsella_intestinalis0.0340.140.173
speciesHoldemania_unclassified-0.0340.1470.181
genusTunalikevirus0.0320.1630.199
genusAcidaminococcus0.0320.1630.199
speciesBacteroides_salanitronis-0.0320.1680.205
genusParasutterella0.0310.1750.212
speciesParasutterella_excrementihominis0.0310.1750.212
genusTuricibacter-0.0310.1790.217
speciesLactococcus_phage_phi7-0.0310.180.217
speciesLactococcus_phage_jm2-0.030.1990.24
orderPseudomonadales0.030.20.24
speciesHoldemania_sp_AP20.0290.2050.246
genusPorphyromonas0.0290.2060.246
familyPodoviridae0.0290.2070.247
speciesPeptostreptococcaceae_noname_unclassified0.0290.2130.253
speciesRuminococcus_sp_JC3040.0280.2230.264
speciesBilophila_unclassified0.0280.2310.273
speciesEggerthella_sp_1_3_56FAA-0.0270.2460.29
speciesDialister_succinatiphilus0.0270.2490.293
genusBilophila0.0260.2550.299
speciesLactococcus_phage_P680-0.0260.260.305
speciesLactobacillus_delbrueckii-0.0250.2830.331
orderViruses_noname-0.0240.2910.339
genusHoldemania-0.0240.2920.339
genusGordonibacter-0.0240.2960.342
speciesGordonibacter_pamelaeae-0.0240.2960.342
speciesParabacteroides_unclassified0.0240.3030.35
speciesPorphyromonas_asaccharolytica0.0240.3080.355
speciesRuminococcus_bromii-0.0230.3160.363
speciesCoriobacteriaceae_bacterium_phI-0.0230.3190.365
speciesCollinsella_tanakaei0.0230.3210.367
speciesKlebsiella_phage_KP360.0230.3230.368
speciesClostridium_sp_KLE_1755-0.0230.3240.369
classErysipelotrichia0.0220.3330.376
orderErysipelotrichales0.0220.3330.376
familyErysipelotrichaceae0.0220.3330.376
genusLachnospiraceae_noname0.0220.3390.382
genusSutterellaceae_unclassified-0.0220.3510.394
speciesLactococcus_phage_bIL67-0.0190.4020.451
speciesTuricibacter_sanguinis-0.0190.4040.452
genusCoriobacteriaceae_noname-0.0190.4060.452
genusButyricicoccus0.0190.4070.452
speciesButyricicoccus_pullicaecorum0.0190.4070.452
speciesMitsuokella_multacida-0.0180.4260.472
genusSlackia0.0170.4580.506
speciesErysipelotrichaceae_bacterium_6_1_450.0170.470.518
genusMethanosphaera-0.0160.4810.527
speciesMethanosphaera_stadtmanae-0.0160.4810.527
classDeltaproteobacteria0.0160.4830.527
orderDesulfovibrionales0.0160.4830.527
familyDesulfovibrionaceae0.0160.4830.527
speciesStreptococcus_phage_Sfi21-0.0150.5080.552
speciesParabacteroides_distasonis0.0150.510.553
familySuccinivibrionaceae-0.0150.5220.565
speciesRoseburia_inulinivorans-0.0150.5240.566
speciesBacteroides_vulgatus-0.0150.5250.566
speciesBacteroides_sp_4_3_47FAA0.0140.5330.573
speciesLactobacillus_ruminis-0.0140.5460.586
speciesBacteroides_fluxus0.0130.5730.612
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0130.5730.612
speciesBilophila_wadsworthia0.0130.5740.612
speciesSutterella_parvirubra-0.0130.5870.624
genusErysipelotrichaceae_noname0.0130.5890.625
speciesEubacterium_sp_3_1_310.0120.5970.628
phylumBacteroidetes-0.0120.5980.628
classBacteroidia-0.0120.5990.628
orderBacteroidales-0.0120.5990.628
speciesSlackia_piriformis-0.0120.5990.628
speciesBacteroides_caccae0.0120.6010.629
genusSuccinatimonas-0.0120.610.636
speciesSuccinatimonas_hippei-0.0120.610.636
speciesDorea_unclassified-0.010.6810.708
genusClostridiaceae_noname-0.0080.7220.747
speciesClostridiaceae_bacterium_JC118-0.0080.7220.747
familyStaphylococcaceae0.0080.7350.759
speciesParabacteroides_sp_20_30.0080.740.763
speciesBacteroides_ovatus0.0070.7460.767
speciesLactococcus_lactis-0.0060.7990.82
genusButyricimonas-0.0050.8170.835
speciesButyricimonas_synergistica-0.0050.8170.835
speciesBifidobacterium_bifidum0.0050.8230.839
speciesCollinsella_unclassified0.0050.8390.853
speciesRuminococcus_callidus0.0050.8450.858
speciesOdoribacter_laneus-0.0030.8840.895
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0030.8860.895
genusStaphylococcus0.0020.9250.933
speciesRuminococcus_torques0.0020.9270.933
speciesLactobacillus_casei_paracasei0.0020.9470.951
speciesClostridium_spiroforme0.0010.960.962
speciesLactobacillus_rhamnosus0.00.9920.992
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01452990253840.002285845600580.00343416470543904230.3739
Colorectal cancerAustria64350.01944254411130.006512363581870.026784354593716905.71796
Type II diabetesDenmark752770.004821207182620.0004963360263850.0374273455991649721.2968
Rheumatoid arthritisChina127980.005208477376850.003755534856550.0975587319784519617.3275
Crohns diseaseSpain17660.01107457763120.000547685931520.1159003504761432447.6276
ObesityDenmark1691230.0005892710949250.006893361399260.6315994077562236273.5326
Ulcerative colitisSpain78660.0004292951515630.000547685931520.6348443386792235273.7349
Type II diabetesChina1831850.006514297055930.008329020410290.6866419175112473681.7476
Type II diabetesSweden53920.00282080444040.004358520681750.8948882804512677890.6807
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382