MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-09-15 22:14:03 PST
Job id & description: 2114, Tia adhesin in H10407
Query type: protein
Count queries & homologs: 1, 42
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
Tia3706159CompleteunknownCOG3637ProteobacteriaEscherichia100.0100.0100.0
Tia3636052CompleteunknownCOG3637ProteobacteriaEscherichia100.098.893.95
Tia3650286CompleteunknownCOG3637ProteobacteriaEscherichia100.098.892.74
Tia3647275CompleteunknownCOG3637ProteobacteriaEscherichia100.098.889.52
Tia3703390CompleteunknownCOG3637ProteobacteriaEscherichia100.0100.089.52
Tia3686459CompleteunknownCOG3637ProteobacteriaEscherichia94.7694.3878.39
Tia3699158CompleteunknownCOG3637ProteobacteriaEscherichia100.098.7969.6
Tia3417400CompleteunknownCOG3637ProteobacteriaEscherichia100.093.5468.95
Tia3680039CompleteunknownCOG3637ProteobacteriaEscherichia100.097.1965.32
Tia3178692CompleteunknownCOG3637ProteobacteriaEscherichia100.087.0565.2
Tia3697141CompleteunknownCOG3637ProteobacteriaEscherichia100.0100.062.65
Tia3333177CompleteunknownCOG3637ProteobacteriaEscherichia100.091.7963.71
Tia3741048CompleteunknownCOG3637ProteobacteriaEscherichia91.5391.4664.76
Tia3637471CompleteunknownCOG3637ProteobacteriaEscherichia91.5389.6464.76
Tia4131235Lack 5'-endunknownCOG3637ProteobacteriaEscherichia91.94100.064.04
Tia3776852CompleteunknownCOG3637ProteobacteriaProvidencia100.0100.046.46
Tia3782129CompleteunknownCOG3637ProteobacteriaProvidencia100.0100.046.64
Tia3776855CompleteunknownCOG3637unknownunknown100.0100.040.71
Tia3996077CompleteunknownCOG3637unknownunknown100.0100.037.02
Tia4325032CompleteunknownCOG3637ProteobacteriaDesulfovibrio100.0100.035.08
Tia4499466CompleteunknownCOG3637Proteobacteriaunknown100.0100.032.26
Tia4361357CompleteunknownCOG3637ProteobacteriaDesulfovibrio72.9872.6936.46
Tia3673519CompleteunknownCOG3637unknownunknown100.0100.031.03
Tia4321644CompleteunknownCOG3637ProteobacteriaDesulfovibrio73.3973.2735.71
Tia5342337Lack 5'-endunknownCOG3637ProteobacteriaDesulfovibrio75.491.5734.76
Tia4105855CompleteunknownCOG3637unknownunknown100.0100.033.2
Tia4598002CompleteunknownCOG3637unknownunknown100.0100.032.26
Tia4299975CompleteunknownCOG3637ProteobacteriaDesulfovibrio72.9873.3935.36
Tia3728050CompleteunknownCOG3637unknownunknown100.0100.031.11
Tia4156935CompleteunknownCOG3637ProteobacteriaDesulfovibrio75.475.5631.75
Tia4256945CompleteunknownCOG3637unknownunknown100.0100.031.91
Tia4095550Lack 5'-endunknownCOG3637unknownunknown74.672.8131.18
Tia4484912Lack 3'-endunknownCOG3637unknownunknown86.6993.3630.09
Tia3878750CompleteunknownCOG3637unknownunknown74.1972.6934.74
Tia5926997Lack 5'-endunknownCOG3637unknownunknown70.97100.031.25
Tia4888312Lack 5'-endunknownCOG3637unknownunknown74.1984.0231.52
Tia4245882Lack 5'-endunknownCOG3637unknownunknown100.093.2132.27
Tia5182553Lack 5'-endunknownCOG3637unknownunknown74.1994.5435.26
Tia4408680CompleteunknownCOG3637unknownunknown100.0100.031.85
Tia4573370CompleteunknownCOG3637unknownunknown74.1972.8232.07
Tia4667737Lack 5'-endunknownCOG3637unknownunknown78.6392.5732.68
Tia4035233CompleteunknownCOG3637unknownunknown75.476.1930.41
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusDesulfovibrio0.4037.43e-743.51e-71
speciesDesulfovibrio_piger0.3692.3e-615.43e-59
classDeltaproteobacteria0.3283.63e-483.43e-46
orderDesulfovibrionales0.3283.63e-483.43e-46
familyDesulfovibrionaceae0.3283.63e-483.43e-46
genusAnaerotruncus0.2281.67e-231.31e-21
speciesDesulfovibrio_desulfuricans0.2282.1e-231.42e-21
phylumProteobacteria0.2255.53e-233.26e-21
speciesAlistipes_senegalensis0.2257.03e-233.69e-21
genusBilophila0.2213.43e-221.62e-20
speciesBilophila_unclassified0.2181.84e-217.9e-20
speciesEscherichia_coli0.2163.99e-211.57e-19
genusOdoribacter0.2061.88e-196.78e-18
genusEscherichia0.2062.01e-196.78e-18
speciesBilophila_wadsworthia0.2021.23e-183.87e-17
speciesOdoribacter_splanchnicus0.22.24e-186.61e-17
speciesAnaerotruncus_unclassified0.1882.7e-167.5e-15
familyPorphyromonadaceae0.1813.13e-158.21e-14
orderEnterobacteriales0.184.4e-151.04e-13
familyEnterobacteriaceae0.184.4e-151.04e-13
familyOxalobacteraceae0.1788.38e-151.88e-13
genusOxalobacter0.1781.03e-142.11e-13
speciesOxalobacter_formigenes0.1781.03e-142.11e-13
familyBacteroidales_noname0.1734.44e-148.06e-13
genusBacteroidales_noname0.1734.44e-148.06e-13
speciesBacteroidales_bacterium_ph80.1734.44e-148.06e-13
speciesOscillibacter_unclassified0.1682.94e-135.14e-12
speciesAlistipes_indistinctus0.1612.14e-123.61e-11
familyOscillospiraceae0.163.51e-125.52e-11
genusOscillibacter0.163.51e-125.52e-11
genusBarnesiella0.1594.21e-126.21e-11
speciesBarnesiella_intestinihominis0.1594.21e-126.21e-11
genusCoprobacter0.1594.6e-126.39e-11
speciesCoprobacter_fastidiosus0.1594.6e-126.39e-11
genusSubdoligranulum0.1585.49e-127.4e-11
speciesLachnospiraceae_bacterium_7_1_58FAA0.1579.56e-121.25e-10
speciesSubdoligranulum_unclassified0.1561.36e-111.73e-10
familyRikenellaceae0.156.72e-118.13e-10
genusAlistipes0.156.72e-118.13e-10
genusParabacteroides0.1453e-103.54e-09
speciesParabacteroides_goldsteinii0.1453.12e-103.59e-09
speciesStreptococcus_sanguinis-0.1434.71e-105.29e-09
speciesParabacteroides_johnsonii0.141.13e-091.24e-08
speciesAlistipes_putredinis0.1391.58e-091.69e-08
speciesAlistipes_finegoldii0.1381.95e-092.05e-08
classGammaproteobacteria0.1382.36e-092.42e-08
speciesAnaerotruncus_colihominis0.1372.99e-093e-08
speciesAlistipes_onderdonkii0.1363.5e-093.44e-08
genusButyrivibrio0.1354.12e-093.97e-08
genusPseudoflavonifractor0.1354.31e-093.99e-08
speciesPseudoflavonifractor_capillosus0.1354.31e-093.99e-08
phylumEuryarchaeota0.1311.41e-081.28e-07
familyAcidaminococcaceae0.131.51e-081.34e-07
genusRuminococcaceae_noname0.1292.31e-081.98e-07
speciesRuminococcaceae_bacterium_D160.1292.31e-081.98e-07
classMethanobacteria0.1282.61e-082.12e-07
orderMethanobacteriales0.1282.61e-082.12e-07
familyMethanobacteriaceae0.1282.61e-082.12e-07
familyClostridiales_noname0.1282.7e-082.16e-07
speciesParabacteroides_merdae0.1282.88e-082.27e-07
genusMethanobrevibacter0.1273.2e-082.48e-07
speciesMethanobrevibacter_smithii0.1264.14e-083.15e-07
speciesClostridium_asparagiforme0.1256.36e-084.76e-07
speciesMethanobrevibacter_unclassified0.1248.37e-086.17e-07
speciesBacteroides_clarus0.1231.04e-077.55e-07
speciesAlistipes_shahii0.1221.13e-078.08e-07
genusHoldemania0.1211.53e-071.08e-06
genusPantoea0.121.73e-071.18e-06
speciesPantoea_unclassified0.121.73e-071.18e-06
genusMitsuokella0.1192.72e-071.83e-06
speciesEubacterium_siraeum0.1174.17e-072.75e-06
speciesLachnospiraceae_bacterium_3_1_46FAA0.1174.2e-072.75e-06
speciesMitsuokella_unclassified0.1156.11e-073.95e-06
genusButyricimonas0.1092.32e-061.46e-05
speciesButyricimonas_synergistica0.1092.32e-061.46e-05
speciesHoldemania_filiformis0.1082.73e-061.7e-05
speciesButyrivibrio_crossotus0.1083.1e-061.9e-05
speciesVeillonella_atypica-0.1073.27e-061.98e-05
speciesClostridium_hathewayi0.1073.51e-062.1e-05
genusClostridium0.1073.64e-062.15e-05
familyClostridiaceae0.1064.25e-062.48e-05
speciesBacteroides_salyersiae0.1064.71e-062.68e-05
genusStreptococcus-0.1064.72e-062.68e-05
orderBurkholderiales0.1055.02e-062.82e-05
classBetaproteobacteria0.1055.73e-063.18e-05
genusMorganella0.1046.41e-063.48e-05
speciesMorganella_morganii0.1046.41e-063.48e-05
classErysipelotrichia0.1047.16e-063.76e-05
orderErysipelotrichales0.1047.16e-063.76e-05
familyErysipelotrichaceae0.1047.16e-063.76e-05
speciesStreptococcus_parasanguinis-0.1047.27e-063.77e-05
speciesParaprevotella_xylaniphila0.1038e-064.1e-05
speciesBacteroides_caccae0.1038.29e-064.21e-05
genusVeillonella-0.1038.38e-064.21e-05
familyStreptococcaceae-0.1021.01e-055.02e-05
familySutterellaceae0.1011.1e-055.41e-05
speciesParaprevotella_unclassified0.1011.13e-055.5e-05
genusParaprevotella0.1011.18e-055.68e-05
phylumVerrucomicrobia0.1011.32e-055.99e-05
classVerrucomicrobiae0.1011.32e-055.99e-05
orderVerrucomicrobiales0.1011.32e-055.99e-05
familyVerrucomicrobiaceae0.1011.32e-055.99e-05
genusAkkermansia0.1011.32e-055.99e-05
speciesAkkermansia_muciniphila0.1011.32e-055.99e-05
speciesBacteroides_eggerthii0.0991.85e-058.32e-05
phylumSynergistetes0.0982e-058.66e-05
classSynergistia0.0982e-058.66e-05
orderSynergistales0.0982e-058.66e-05
familySynergistaceae0.0982e-058.66e-05
genusAcidaminococcus0.0982.09e-058.97e-05
speciesStreptococcus_gordonii-0.0982.21e-059.4e-05
speciesRuminococcus_callidus0.0982.38e-050.0001
familyPrevotellaceae0.0954.2e-050.000175
genusLachnospiraceae_noname0.0944.3e-050.000178
speciesClostridium_citroniae0.0944.71e-050.000193
speciesParabacteroides_distasonis0.0935.35e-050.000218
speciesLachnospiraceae_bacterium_1_1_57FAA0.0926.6e-050.000266
speciesOdoribacter_laneus0.0927.32e-050.000293
speciesOlsenella_unclassified0.0917.92e-050.000314
genusEggerthella-0.0918.2e-050.000323
speciesEscherichia_unclassified0.0918.52e-050.000332
genusFlavonifractor0.099.07e-050.000348
speciesFlavonifractor_plautii0.099.07e-050.000348
speciesAcidaminococcus_fermentans0.099.35e-050.000356
speciesVeillonella_unclassified-0.099.64e-050.000364
genusAcidaminococcaceae_unclassified0.099.83e-050.000368
speciesClostridium_bolteae0.090.0001010.000375
speciesHaemophilus_parainfluenzae-0.0890.0001070.000395
speciesVeillonella_parvula-0.0890.0001120.00041
genusPyramidobacter0.0890.0001150.000414
speciesPyramidobacter_piscolens0.0890.0001150.000414
speciesBacteroides_nordii0.0890.0001220.000436
speciesStreptococcus_mitis_oralis_pneumoniae-0.0890.0001230.000437
speciesStreptococcus_salivarius-0.0890.0001240.000437
speciesRoseburia_hominis0.0880.0001330.000465
speciesEggerthella_unclassified-0.0880.0001410.000489
speciesAlistipes_sp_AP110.0880.0001430.000493
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0870.0001650.000564
speciesStreptococcus_vestibularis-0.0870.0001670.000567
genusSuccinatimonas0.0870.000170.000569
speciesSuccinatimonas_hippei0.0870.000170.000569
speciesVeillonella_dispar-0.0870.0001770.000588
genusOlsenella0.0860.0001880.000621
genusActinomyces-0.0860.0001980.000649
genusHaemophilus-0.0860.0002010.000654
genusErysipelotrichaceae_noname0.0860.0002120.000684
speciesStreptococcus_mutans-0.0860.0002130.000684
familyActinomycetaceae-0.0850.0002190.000698
familySuccinivibrionaceae0.0850.0002350.000744
speciesRuminococcus_gnavus-0.0850.0002420.000761
orderPasteurellales-0.0840.0002630.000817
familyPasteurellaceae-0.0840.0002630.000817
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0830.000310.000956
speciesRuminococcus_torques0.0830.0003240.000993
speciesMegasphaera_unclassified0.0830.0003280.000999
speciesParaprevotella_clara0.0830.0003430.00104
speciesBacteroides_cellulosilyticus0.0820.0003920.00118
classBacilli-0.0820.0004030.0012
genusParasutterella0.0820.0004080.0012
speciesParasutterella_excrementihominis0.0820.0004080.0012
genusRothia-0.0810.0004370.00128
genusBurkholderiales_noname0.0810.0004410.00128
speciesBurkholderiales_bacterium_1_1_470.0810.0004410.00128
familyMicrococcaceae-0.0810.0004640.00134
speciesBacteroides_dorei0.0810.0004850.00139
orderBacillales-0.080.0005390.00153
orderLactobacillales-0.0790.0005910.00167
orderAeromonadales0.0790.0006140.00173
familyBurkholderiales_noname0.0790.0006550.00183
orderViruses_noname0.0770.0009130.00253
genusSutterella0.0770.0009170.00253
speciesRothia_mucilaginosa-0.0760.0009540.00262
speciesBacteroides_massiliensis0.0760.0009820.00268
speciesClostridium_sp_L2_500.0760.001080.00293
speciesSutterella_wadsworthensis0.0750.001150.0031
genusSutterellaceae_unclassified0.0740.001340.00359
genusCatenibacterium0.0740.001370.00363
speciesCatenibacterium_mitsuokai0.0740.001370.00363
speciesAcidaminococcus_intestini0.0730.00150.00396
genusClostridiales_noname0.0720.001760.00459
familyBacillales_noname-0.0720.001780.00459
genusGemella-0.0720.001780.00459
speciesBacteroides_faecis0.0720.001780.00459
orderActinomycetales-0.0720.001920.00493
speciesStreptococcus_australis-0.0690.002640.00674
speciesEggerthella_lenta-0.0690.002750.00698
speciesButyrivibrio_unclassified0.0690.00280.00707
speciesBacteroides_stercoris0.0680.003150.00791
speciesCoprococcus_sp_ART55_10.0680.003420.00854
genusActinobacillus-0.0660.004330.0107
speciesActinobacillus_unclassified-0.0660.004330.0107
speciesCollinsella_tanakaei0.0660.004370.0107
speciesClostridium_leptum0.0660.004420.0108
speciesCitrobacter_freundii0.0660.004580.0111
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0650.004660.0113
speciesEnterobacter_cloacae0.0650.004690.0113
speciesPrevotella_copri0.0650.004710.0113
speciesPorphyromonas_uenonis0.0650.004740.0113
speciesBacteroides_intestinalis0.0650.00490.0116
genusPrevotella0.0640.005740.0135
speciesLactobacillus_mucosae-0.0630.006190.0145
speciesOscillibacter_sp_KLE_1728-0.0630.00660.0154
speciesRuminococcus_champanellensis0.0620.00730.017
genusMegasphaera0.0620.007350.017
speciesLactobacillus_rhamnosus-0.0620.007720.0178
genusProteus0.0610.007940.0182
speciesBacteroides_coprophilus0.0610.008150.0186
speciesPeptostreptococcus_anaerobius0.0610.008310.0189
genusEnterobacter0.0610.008450.0191
speciesRuminococcus_bromii0.0610.008530.0192
speciesEubacterium_biforme0.0610.008740.0196
familyViruses_noname0.060.009110.0202
genusViruses_noname0.060.009110.0202
speciesHaemophilus_paraphrohaemolyticus-0.060.009410.0208
speciesPorphyromonas_asaccharolytica0.060.00980.0215
speciesKlebsiella_pneumoniae0.060.009990.0218
speciesSubdoligranulum_sp_4_3_54A2FAA0.0590.01060.0231
speciesClostridiales_bacterium_1_7_47FAA0.0590.01090.0236
speciesEubacterium_eligens0.0580.01210.0261
speciesEubacterium_cylindroides0.0580.01230.0264
genusKlebsiella0.0570.01330.0284
genusPhascolarctobacterium0.0570.01420.0301
speciesPhascolarctobacterium_succinatutens0.0570.01420.0301
speciesCitrobacter_unclassified0.0560.01490.0314
genusPorphyromonas0.0560.01530.0321
speciesStreptococcus_thermophilus-0.0560.01550.0324
speciesDialister_succinatiphilus0.0560.01570.0326
speciesErysipelotrichaceae_bacterium_2_2_44A0.0540.01840.0381
speciesBifidobacterium_dentium-0.0540.01860.0383
genusPropionibacterium-0.0540.01970.0404
speciesEubacterium_ventriosum0.0540.020.0409
speciesCoprococcus_eutactus0.0530.0220.0448
speciesHaemophilus_sputorum-0.0530.02260.0458
familyPropionibacteriaceae-0.0530.02290.0462
speciesBacteroides_barnesiae0.0530.0230.0462
speciesMegasphaera_elsdenii0.0520.02530.0504
genusCitrobacter0.0520.02540.0504
speciesErysipelotrichaceae_bacterium_21_30.0520.02540.0504
speciesKlebsiella_oxytoca0.0520.02550.0504
speciesEnterobacteria_phage_HK5440.0510.02730.0537
speciesEubacterium_limosum0.050.03030.0593
speciesCampylobacter_concisus-0.050.0320.0624
speciesMitsuokella_multacida0.0490.03240.0629
speciesPrevotella_buccae-0.0490.03390.0656
speciesCoriobacteriaceae_bacterium_phI0.0490.03520.0678
speciesAnaerostipes_hadrus-0.0480.03780.0725
genusCoriobacteriaceae_noname0.0480.03850.0733
speciesEubacterium_rectale-0.0480.03850.0733
familyRuminococcaceae0.0470.04090.0775
speciesClostridium_sp_ATCC_BAA_4420.0470.04110.0775
speciesLactobacillus_casei_paracasei-0.0470.04120.0775
speciesClostridium_symbiosum0.0470.04160.0779
phylumViruses_noname0.0470.04260.0792
classViruses_noname0.0470.04260.0792
speciesMegamonas_hypermegale0.0470.04350.0805
genusSolobacterium-0.0460.04550.0836
speciesSolobacterium_moorei-0.0460.04550.0836
speciesBacteroides_salanitronis0.0460.04740.0867
speciesBacteroides_sp_3_1_190.0450.04940.09
speciesLactococcus_garvieae0.0450.05350.0971
genusCoprococcus0.0450.05370.0971
genusAnaerostipes-0.0440.05770.104
speciesKlebsiella_sp_MS_92_30.0430.06120.11
genusLactobacillus-0.0430.06510.116
genusPeptoniphilus0.0420.06650.118
genusAggregatibacter-0.0410.07540.134
speciesRuminococcus_lactaris0.0410.07840.138
speciesParabacteroides_sp_20_30.0410.07890.138
genusButyricicoccus0.0410.07920.138
speciesButyricicoccus_pullicaecorum0.0410.07920.138
speciesLactobacillus_delbrueckii-0.0410.07940.138
familyLactobacillaceae-0.040.08030.139
familyLachnospiraceae0.040.08380.145
speciesStreptococcus_lutetiensis0.040.08440.145
classNegativicutes0.040.08540.146
orderSelenomonadales0.040.08540.146
speciesRoseburia_unclassified0.0390.08780.15
speciesDorea_longicatena0.0390.09130.155
speciesCoprobacillus_sp_D60.0390.09350.158
speciesLactobacillus_ruminis0.0390.09390.158
speciesParabacteroides_unclassified0.0380.09660.162
speciesLactococcus_phage_phi70.0380.1010.169
speciesLactobacillus_acidophilus-0.0380.1020.17
speciesBacteroides_pectinophilus0.0380.1020.17
genusStaphylococcus-0.0380.1030.171
genusLambdalikevirus0.0380.1040.172
speciesBacteroides_fluxus-0.0370.1110.182
speciesFusobacterium_mortiferum-0.0370.1110.182
speciesDorea_formicigenerans-0.0370.1140.186
speciesStreptococcus_anginosus-0.0360.1160.189
speciesBacteroides_fragilis0.0360.1170.19
speciesRuminococcus_obeum0.0360.120.194
speciesHoldemania_unclassified0.0360.1230.198
speciesBifidobacterium_adolescentis0.0360.1240.198
speciesBacteroides_uniformis0.0360.1240.198
genusPeptostreptococcaceae_noname-0.0350.1260.201
speciesLactococcus_phage_936_sensu_lato0.0350.1320.21
speciesClostridium_clostridioforme0.0350.1340.212
speciesLachnospiraceae_bacterium_6_1_63FAA0.0350.1350.213
speciesParabacteroides_sp_D130.0340.1380.217
familyStaphylococcaceae-0.0340.1390.218
phylumActinobacteria-0.0340.140.218
classActinobacteria-0.0340.140.218
speciesCoprococcus_catus0.0340.1410.219
speciesDialister_invisus-0.0340.1420.22
genusC2likevirus0.0330.1480.228
speciesPropionibacterium_freudenreichii-0.0330.1540.236
genusMethanosphaera0.0330.1550.236
speciesTuricibacter_unclassified-0.0330.1550.236
speciesMethanosphaera_stadtmanae0.0330.1550.236
speciesEnterococcus_faecalis0.0320.1610.244
speciesRuminococcus_sp_JC304-0.0320.1620.245
speciesCollinsella_unclassified0.0320.1630.246
speciesPrevotella_bivia0.0320.1660.25
speciesAlistipes_unclassified-0.0320.170.255
speciesLactobacillus_gasseri-0.0320.1730.258
speciesLachnospiraceae_bacterium_2_1_46FAA0.0310.1750.26
genusMegamonas0.0310.1760.26
speciesMegamonas_unclassified0.0310.1760.26
speciesHoldemania_sp_AP20.0310.1810.267
speciesClostridium_bartlettii-0.0310.1830.269
speciesClostridium_spiroforme-0.0310.1840.27
speciesErysipelotrichaceae_bacterium_3_1_53-0.0310.1860.272
speciesLactococcus_phage_P6800.030.1890.275
orderPseudomonadales-0.030.1910.277
speciesRuminococcus_sp_5_1_39BFAA-0.030.1930.279
speciesMegamonas_rupellensis0.030.1950.281
genusBifidobacterium-0.030.1970.283
orderBifidobacteriales-0.0290.2070.295
familyBifidobacteriaceae-0.0290.2070.295
speciesBifidobacterium_longum-0.0290.2070.295
speciesStreptococcus_pasteurianus-0.0290.210.299
familySiphoviridae0.0290.2120.3
speciesEubacterium_hallii0.0280.2190.309
speciesC2likevirus_unclassified0.0280.2210.311
speciesStreptococcus_phage_Sfi210.0280.2220.311
speciesPeptostreptococcus_stomatis-0.0280.2220.311
speciesLactobacillus_crispatus0.0280.2230.311
speciesKlebsiella_phage_KP36-0.0280.2240.312
speciesAggregatibacter_segnis-0.0280.2250.312
speciesOscillibacter_sp_KLE_17450.0280.2260.313
speciesBifidobacterium_animalis-0.0280.2340.323
genusTuricibacter-0.0270.2430.334
familyPeptostreptococcaceae-0.0270.2480.34
speciesLactobacillus_sanfranciscensis0.0270.2520.345
speciesEubacterium_ramulus0.0260.2620.357
speciesEubacterium_sp_3_1_310.0260.2630.357
speciesLactococcus_lactis-0.0260.2630.357
speciesCoprobacillus_unclassified-0.0260.2640.357
speciesBacteroides_plebeius0.0260.270.362
genusAdlercreutzia0.0250.2710.362
speciesProteus_mirabilis0.0250.2710.362
speciesAdlercreutzia_equolifaciens0.0250.2710.362
speciesLactococcus_phage_bIL670.0250.2790.372
familyEnterococcaceae0.0250.2860.379
speciesLactobacillus_vaginalis-0.0250.2860.379
speciesLactobacillus_reuteri0.0240.2920.386
speciesLachnospiraceae_bacterium_5_1_57FAA0.0240.2950.389
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0240.2990.393
speciesBacteroides_vulgatus0.0240.30.393
genusEnterococcus0.0240.3060.4
speciesLactobacillus_fermentum-0.0230.3110.406
speciesClostridium_perfringens-0.0230.3230.42
speciesKlebsiella_unclassified0.0230.3250.421
speciesGemella_morbillorum0.0220.3330.431
speciesAcidaminococcus_unclassified0.0220.3340.431
genusEubacterium-0.0220.3350.431
familyEubacteriaceae-0.0220.3370.432
genusLeuconostoc-0.0220.3390.434
familyLeuconostocaceae-0.0220.3430.438
genusCollinsella0.0220.3440.438
genusTunalikevirus-0.0220.3520.447
familyClostridiales_Family_XI_Incertae_Sedis0.0210.3530.447
genusBlautia0.0210.3560.449
speciesMegamonas_funiformis0.0210.360.453
orderCaudovirales0.0210.3630.456
speciesWeissella_confusa0.0210.3670.459
classClostridia0.0210.3690.46
orderClostridiales0.0210.3690.46
speciesPeptostreptococcaceae_noname_unclassified-0.0190.4010.498
genusFaecalibacterium-0.0190.4080.503
speciesLactobacillus_salivarius-0.0190.4080.503
speciesFaecalibacterium_prausnitzii-0.0190.4080.503
speciesBacteroides_oleiciplenus0.0190.410.504
phylumFusobacteria-0.0190.4230.516
classFusobacteriia-0.0190.4230.516
orderFusobacteriales-0.0190.4230.516
classEpsilonproteobacteria0.0180.4260.516
orderCampylobacterales0.0180.4260.516
genusSlackia0.0180.4260.516
genusRuminococcus0.0180.4330.523
speciesSlackia_piriformis0.0180.4420.532
genusCoprobacillus-0.0170.4510.54
speciesMegasphaera_micronuciformis-0.0170.4510.54
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0170.4530.541
speciesBacteroides_sp_4_3_47FAA-0.0170.4610.549
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0160.4790.569
speciesWeissella_cibaria0.0160.4850.575
genusClostridiaceae_noname0.0160.4910.579
speciesClostridiaceae_bacterium_JC1180.0160.4910.579
speciesLactobacillus_plantarum-0.0160.4940.581
speciesBifidobacterium_breve-0.0160.4970.584
speciesLactococcus_phage_jm20.0160.5020.588
genusGordonibacter0.0150.5090.593
speciesGordonibacter_pamelaeae0.0150.5090.593
speciesEggerthella_sp_1_3_56FAA-0.0150.510.593
speciesBacteroides_xylanisolvens0.0150.5140.596
speciesCoprococcus_comes0.0150.5220.604
genusSiphoviridae_noname0.0140.5320.612
speciesBacteroides_thetaiotaomicron0.0140.5320.612
speciesTuricibacter_sanguinis-0.0140.5330.612
genusLactococcus-0.0140.5370.615
speciesBifidobacterium_bifidum-0.0140.5430.62
speciesAlistipes_sp_HGB50.0140.5440.62
speciesEnterococcus_faecium0.0140.5450.62
familyPodoviridae-0.0140.5580.633
speciesBifidobacterium_pseudocatenulatum-0.0130.5790.655
speciesBacteroides_finegoldii0.0130.5830.658
speciesCoprobacillus_sp_29_10.0130.5840.658
speciesBacteroides_sp_2_1_220.0120.5970.671
speciesRoseburia_inulinivorans-0.0120.6050.678
familyCampylobacteraceae0.0120.6160.689
speciesDorea_unclassified-0.0110.6290.702
speciesBlautia_hydrogenotrophica-0.0110.6410.714
speciesLactobacillus_oris-0.010.660.733
speciesRoseburia_intestinalis-0.010.6640.734
familyFusobacteriaceae-0.010.6650.734
speciesClostridium_nexile-0.010.6660.734
genusFusobacterium-0.010.670.737
speciesBacteroides_sp_1_1_60.0090.6830.75
speciesFusobacterium_varium0.0090.6870.75
genusCampylobacter0.0090.6880.75
speciesCollinsella_aerofaciens0.0090.6880.75
speciesBacteroides_coprocola0.0090.7030.761
classBacteroidia-0.0090.7040.761
orderBacteroidales-0.0090.7040.761
phylumBacteroidetes-0.0090.7050.761
phylumFirmicutes0.0080.720.773
speciesParvimonas_unclassified0.0080.7230.773
speciesOdoribacter_unclassified0.0080.7230.773
genusParvimonas0.0080.7240.773
familyBacteroidaceae-0.0080.7270.773
genusBacteroides-0.0080.7270.773
speciesLeuconostoc_lactis-0.0080.7270.773
speciesBifidobacterium_catenulatum0.0080.7290.773
speciesClostridium_sp_KLE_1755-0.0080.7310.774
speciesBlautia_producta-0.0080.7410.782
speciesLactobacillus_amylovorus-0.0070.7470.787
speciesEnterobacter_aerogenes0.0070.7550.794
genusMyoviridae_noname-0.0070.7660.803
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0070.7720.808
genusDorea0.0060.7920.827
genusDialister-0.0060.8030.837
speciesFusobacterium_nucleatum-0.0060.8090.841
speciesEubacterium_dolichum-0.0050.8150.844
speciesPrevotella_stercorea-0.0050.8180.844
orderCoriobacteriales0.0050.8190.844
familyCoriobacteriaceae0.0050.8190.844
genusWeissella0.0050.8270.85
speciesBifidobacterium_angulatum0.0050.8350.857
familyVeillonellaceae-0.0040.8510.87
speciesSutterella_parvirubra-0.0040.8520.87
speciesErysipelotrichaceae_bacterium_6_1_45-0.0030.9010.919
speciesBacteroides_ovatus0.0030.9110.927
speciesClostridium_ramosum0.0020.9170.931
speciesAnaerostipes_unclassified0.0020.9310.943
speciesFusobacterium_ulcerans-0.0020.9330.943
genusRoseburia0.0020.9380.946
speciesStreptococcus_infantarius0.0010.9510.957
speciesCollinsella_intestinalis-0.0010.9630.967
familyMyoviridae-0.0010.9710.973
genusPeptostreptococcus0.00.9870.987
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Rheumatoid arthritisChina127980.004807168013790.003730114942228.52049712921e-05340.113382
Type II diabetesChina1831850.02001406228660.01130655671060.0144788640048423914.0091
Ulcerative colitisSpain78660.003330356161590.005787117712510.0264258210719329610.8729
Colorectal cancerAustria64350.03017638498970.001572296893440.103333549813516517.4753
Crohns diseaseSpain17660.02885551986480.005787117712510.2337881364781760758.5436
Type II diabetesDenmark752770.005758624366850.006154337100970.6471180484422371677.7395
Liver cirrhosisChina1201140.005156681017360.003062666082770.7073274325452679590.0097
ObesityDenmark1691230.006136192563790.006950737067630.8401917618922720789.4643
Type II diabetesSweden53920.007091464906960.005273812149240.8654709109782595787.9004
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382