MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-09-15 22:25:07 PST
Job id & description: 2115, EtpA in H10407
Query type: protein
Count queries & homologs: 1, 1
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
AAX13509.238782CompleteK07279COG3210unknownunknown76.1292.8750.97
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesClostridium_perfringens0.1029.32e-060.0044
classGammaproteobacteria0.0880.0001480.0326
speciesCitrobacter_freundii0.0850.0002450.0326
orderEnterobacteriales0.0830.0003450.0326
familyEnterobacteriaceae0.0830.0003450.0326
speciesCitrobacter_unclassified0.0810.0004540.0357
speciesBacteroides_stercoris0.080.0005490.037
genusMegasphaera0.0790.0006770.0399
speciesMegasphaera_unclassified0.0770.000930.04
phylumProteobacteria0.0750.001090.04
genusEnterobacter0.0750.001110.04
genusCitrobacter0.0750.001230.04
genusPyramidobacter0.0750.001250.04
speciesPyramidobacter_piscolens0.0750.001250.04
speciesEscherichia_coli0.0740.001270.04
speciesCollinsella_aerofaciens-0.0730.001520.0448
genusMorganella0.0720.001860.0448
speciesMorganella_morganii0.0720.001860.0448
genusCollinsella-0.0720.001960.0448
speciesWeissella_confusa0.0720.001960.0448
speciesStreptococcus_infantarius0.0710.002130.0448
genusEscherichia0.0710.00220.0448
speciesLeuconostoc_lactis0.070.002360.0448
phylumSynergistetes0.070.002560.0448
classSynergistia0.070.002560.0448
orderSynergistales0.070.002560.0448
familySynergistaceae0.070.002560.0448
speciesEnterobacter_cloacae0.0690.002730.046
genusCampylobacter0.0680.003080.0501
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0680.003280.0516
familyCampylobacteraceae0.0680.003430.0522
speciesKlebsiella_pneumoniae0.0660.004260.0615
speciesAcidaminococcus_intestini0.0660.00430.0615
classEpsilonproteobacteria0.0640.005580.0737
orderCampylobacterales0.0640.005580.0737
speciesCampylobacter_concisus0.0640.005620.0737
genusKlebsiella0.0630.006330.0808
speciesClostridium_nexile0.0620.007210.0896
genusPeptostreptococcaceae_noname0.0620.007770.094
speciesHaemophilus_paraphrohaemolyticus0.060.009640.114
familyPeptostreptococcaceae0.0590.01120.126
genusFlavonifractor0.0580.01150.126
speciesFlavonifractor_plautii0.0580.01150.126
speciesRuminococcus_gnavus0.0570.0140.15
speciesLactobacillus_sanfranciscensis0.0570.01450.152
speciesTuricibacter_sanguinis0.0560.01480.152
speciesClostridium_symbiosum0.0560.01560.157
speciesStreptococcus_australis0.0550.01680.165
speciesAcidaminococcus_fermentans0.0550.01820.174
speciesHoldemania_sp_AP20.0550.01840.174
speciesCoprococcus_catus-0.0540.02030.185
familyFusobacteriaceae0.0540.02040.185
genusWeissella0.0530.02220.198
phylumFusobacteria0.0520.02460.205
classFusobacteriia0.0520.02460.205
orderFusobacteriales0.0520.02460.205
familyLeuconostocaceae0.0520.02470.205
familySiphoviridae-0.0510.02640.215
speciesClostridium_bolteae0.0510.02860.228
speciesEnterobacteria_phage_HK5440.0510.0290.228
genusFusobacterium0.050.03050.236
speciesLactococcus_garvieae0.050.03150.239
genusBarnesiella-0.0490.03240.239
speciesBarnesiella_intestinihominis-0.0490.03240.239
orderCoriobacteriales-0.0490.03430.244
familyCoriobacteriaceae-0.0490.03430.244
speciesPrevotella_buccae0.0490.03530.244
speciesSubdoligranulum_unclassified-0.0490.03550.244
phylumEuryarchaeota-0.0480.03750.244
familyViruses_noname0.0480.03760.244
genusViruses_noname0.0480.03760.244
familyBacteroidaceae0.0480.0380.244
genusBacteroides0.0480.0380.244
speciesClostridium_bartlettii0.0480.03830.244
genusSubdoligranulum-0.0480.0390.245
speciesRuminococcus_obeum-0.0470.0410.255
speciesAnaerostipes_hadrus-0.0470.04170.255
speciesLactobacillus_ruminis0.0470.04250.255
speciesBifidobacterium_adolescentis-0.0470.04320.255
speciesBacteroides_xylanisolvens0.0470.04370.255
orderCaudovirales-0.0460.04730.255
speciesAggregatibacter_segnis0.0460.04740.255
speciesCoprobacillus_sp_29_10.0460.04790.255
classNegativicutes0.0460.04830.255
orderSelenomonadales0.0460.04830.255
classMethanobacteria-0.0460.04890.255
orderMethanobacteriales-0.0460.04890.255
familyMethanobacteriaceae-0.0460.04890.255
speciesEubacterium_siraeum-0.0450.04920.255
speciesBacteroides_cellulosilyticus-0.0450.04930.255
speciesFusobacterium_varium0.0450.04940.255
speciesAnaerotruncus_unclassified-0.0450.04990.255
genusCoprobacter-0.0450.05070.255
speciesCoprobacter_fastidiosus-0.0450.05070.255
genusAcidaminococcus0.0450.05240.26
genusMethanobrevibacter-0.0450.05330.262
speciesEubacterium_hallii-0.0440.0550.265
speciesClostridium_citroniae0.0440.05520.265
speciesStreptococcus_thermophilus-0.0440.05550.265
genusDorea-0.0440.05620.265
speciesClostridium_clostridioforme-0.0440.05810.272
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0440.05950.275
speciesBacteroides_finegoldii0.0430.06020.276
speciesRuminococcus_torques-0.0430.06080.276
genusLactobacillus0.0430.0630.283
speciesTuricibacter_unclassified0.0430.06470.288
speciesMethanobrevibacter_smithii-0.0430.0660.291
speciesButyrivibrio_unclassified-0.0420.06770.296
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0420.06830.296
familyLactobacillaceae0.0420.070.299
speciesAlistipes_onderdonkii-0.0420.07020.299
speciesEubacterium_sp_3_1_31-0.0420.07190.303
familyClostridiales_noname0.0420.07270.304
speciesBifidobacterium_pseudocatenulatum0.0410.07430.308
speciesErysipelotrichaceae_bacterium_21_3-0.0410.07550.31
genusClostridium0.0410.07810.318
genusSutterella-0.0410.07940.32
speciesDorea_formicigenerans-0.0410.07990.32
familyVeillonellaceae0.040.08070.32
familyBacillales_noname0.040.0830.324
genusGemella0.040.0830.324
speciesMegasphaera_micronuciformis0.040.08380.324
genusButyrivibrio-0.040.08530.327
familyClostridiaceae0.040.08670.329
speciesBacteroides_sp_1_1_60.040.08720.329
speciesEubacterium_rectale-0.0390.08880.329
genusPseudoflavonifractor-0.0390.08940.329
speciesPseudoflavonifractor_capillosus-0.0390.08940.329
speciesAlistipes_sp_AP11-0.0390.09050.329
familyPorphyromonadaceae-0.0390.09090.329
genusTuricibacter0.0390.09120.329
speciesMegasphaera_elsdenii0.0390.09470.339
speciesSutterella_wadsworthensis-0.0390.09540.339
genusLeuconostoc0.0380.09730.342
speciesClostridium_leptum-0.0380.09770.342
speciesStreptococcus_mutans-0.0380.1010.348
speciesMitsuokella_unclassified-0.0380.1010.348
speciesAlistipes_finegoldii-0.0380.1020.349
speciesRuminococcus_sp_5_1_39BFAA-0.0370.1070.363
speciesLachnospiraceae_bacterium_2_1_58FAA0.0370.1080.364
genusC2likevirus-0.0360.1170.387
speciesLactobacillus_salivarius0.0360.1170.387
speciesC2likevirus_unclassified-0.0360.120.387
speciesEscherichia_unclassified0.0360.1220.387
phylumVerrucomicrobia-0.0360.1230.387
classVerrucomicrobiae-0.0360.1230.387
orderVerrucomicrobiales-0.0360.1230.387
familyVerrucomicrobiaceae-0.0360.1230.387
genusAkkermansia-0.0360.1230.387
speciesAkkermansia_muciniphila-0.0360.1230.387
speciesPrevotella_stercorea-0.0350.1270.394
speciesVeillonella_parvula0.0350.1270.394
speciesClostridium_asparagiforme0.0350.1310.404
speciesStreptococcus_parasanguinis-0.0350.1320.405
speciesBacteroides_fluxus0.0340.1370.415
speciesLachnospiraceae_bacterium_1_4_56FAA0.0340.1370.415
genusCoprobacillus0.0340.1390.415
speciesDorea_longicatena-0.0340.140.415
genusGordonibacter-0.0340.1440.415
speciesGordonibacter_pamelaeae-0.0340.1440.415
familyBacteroidales_noname-0.0340.1460.415
genusAdlercreutzia-0.0340.1460.415
genusBacteroidales_noname-0.0340.1460.415
speciesAdlercreutzia_equolifaciens-0.0340.1460.415
speciesBacteroidales_bacterium_ph8-0.0340.1460.415
genusOxalobacter0.0340.1470.415
speciesOxalobacter_formigenes0.0340.1470.415
familyOxalobacteraceae0.0330.1530.427
genusAggregatibacter0.0330.1530.427
speciesClostridium_sp_L2_500.0330.1580.439
speciesEggerthella_unclassified0.0320.1610.444
speciesClostridium_ramosum0.0320.1620.445
speciesCoprococcus_sp_ART55_1-0.0320.1630.445
classBetaproteobacteria0.0320.1670.453
orderBurkholderiales0.0310.1750.467
speciesLactobacillus_mucosae0.0310.1750.467
speciesBacteroides_coprocola0.0310.1750.467
speciesLactococcus_phage_jm20.0310.1770.469
genusEggerthella0.0310.1780.469
speciesBifidobacterium_animalis-0.0310.1830.48
genusPeptostreptococcus0.0310.1840.48
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0310.1860.482
speciesBacteroides_sp_2_1_22-0.030.1880.482
speciesSubdoligranulum_sp_4_3_54A2FAA0.030.1880.482
speciesLactobacillus_gasseri-0.030.1930.492
classDeltaproteobacteria0.030.20.502
orderDesulfovibrionales0.030.20.502
familyDesulfovibrionaceae0.030.20.502
speciesAlistipes_senegalensis-0.0290.2030.504
familyActinomycetaceae-0.0290.2040.504
speciesBlautia_hydrogenotrophica-0.0290.2040.504
speciesRoseburia_hominis-0.0290.2050.504
speciesBacteroides_coprophilus0.0290.2070.506
orderBacillales0.0290.210.508
speciesEubacterium_ramulus-0.0290.210.508
genusActinomyces-0.0290.2160.52
speciesMegamonas_rupellensis0.0280.2180.522
speciesStreptococcus_gordonii0.0280.220.524
genusSutterellaceae_unclassified0.0280.2230.529
speciesOdoribacter_unclassified-0.0280.2280.537
speciesAnaerotruncus_colihominis0.0280.2290.537
speciesBacteroides_vulgatus0.0280.230.537
genusPropionibacterium-0.0270.2350.541
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0270.2350.541
speciesCoriobacteriaceae_bacterium_phI0.0280.2350.541
speciesCollinsella_tanakaei0.0270.2360.541
speciesKlebsiella_oxytoca0.0270.2410.55
genusCoriobacteriaceae_noname0.0270.2440.553
genusAnaerostipes-0.0270.2450.553
speciesBacteroides_uniformis-0.0270.2490.56
speciesBacteroides_faecis-0.0270.2520.564
genusButyricicoccus-0.0260.2590.574
speciesButyricicoccus_pullicaecorum-0.0260.2590.574
speciesParaprevotella_xylaniphila-0.0260.2660.587
genusMethanosphaera-0.0250.2780.607
speciesMethanosphaera_stadtmanae-0.0250.2780.607
genusRuminococcus-0.0250.280.609
speciesPeptostreptococcaceae_noname_unclassified0.0250.2840.615
genusOdoribacter-0.0250.2860.616
speciesAnaerostipes_unclassified0.0240.2930.629
genusClostridiaceae_noname-0.0240.2970.629
speciesClostridiaceae_bacterium_JC118-0.0240.2970.629
speciesMethanobrevibacter_unclassified-0.0240.2980.629
genusMitsuokella-0.0240.30.629
speciesStreptococcus_sanguinis0.0240.30.629
speciesDorea_unclassified-0.0240.3030.631
speciesKlebsiella_unclassified0.0240.3040.631
speciesMegamonas_funiformis0.0240.3050.631
speciesBacteroides_massiliensis0.0240.3060.631
genusSiphoviridae_noname-0.0240.3080.632
speciesClostridium_hathewayi0.0230.3120.635
orderViruses_noname0.0230.3150.635
genusFaecalibacterium0.0230.3150.635
speciesFaecalibacterium_prausnitzii0.0230.3150.635
speciesFusobacterium_nucleatum0.0230.3160.635
genusBlautia-0.0230.3190.636
genusCoprococcus-0.0230.3210.636
speciesCoprococcus_eutactus-0.0230.3210.636
phylumViruses_noname-0.0230.3240.636
classViruses_noname-0.0230.3240.636
classClostridia-0.0230.3280.636
orderClostridiales-0.0230.3280.636
speciesRoseburia_intestinalis0.0230.3280.636
speciesLactobacillus_plantarum-0.0230.330.636
speciesRuminococcus_champanellensis-0.0230.330.636
speciesBifidobacterium_breve-0.0220.3330.639
speciesLachnospiraceae_bacterium_5_1_57FAA0.0220.3360.642
familyEubacteriaceae-0.0220.3420.648
speciesPropionibacterium_freudenreichii-0.0220.3420.648
genusEubacterium-0.0220.3430.648
genusVeillonella0.0220.3530.663
speciesStreptococcus_mitis_oralis_pneumoniae0.0210.3540.663
speciesEubacterium_cylindroides-0.0210.3590.67
speciesBilophila_wadsworthia0.0210.3640.672
genusSuccinatimonas0.0210.3650.672
speciesSuccinatimonas_hippei0.0210.3650.672
genusDialister-0.0210.3660.672
speciesLactobacillus_rhamnosus-0.0210.3690.672
speciesBacteroides_sp_3_1_19-0.0210.3690.672
genusParabacteroides-0.0210.3710.673
familyPodoviridae-0.0210.3720.673
speciesEubacterium_dolichum0.020.3770.677
familyStaphylococcaceae-0.020.3790.677
familySuccinivibrionaceae0.020.380.677
genusOlsenella0.020.3820.677
speciesLactobacillus_vaginalis-0.020.3830.677
speciesAlistipes_sp_HGB5-0.020.3830.677
genusParaprevotella-0.020.3850.678
speciesLachnospiraceae_bacterium_6_1_63FAA0.020.3870.679
speciesDialister_invisus-0.020.3890.68
genusStaphylococcus-0.020.3940.684
speciesLactobacillus_crispatus-0.020.3940.684
familyMyoviridae0.020.3990.69
genusRoseburia0.0190.4020.691
speciesAlistipes_unclassified-0.0190.4040.691
speciesRothia_mucilaginosa0.0190.4050.691
speciesOdoribacter_splanchnicus-0.0190.4060.691
speciesEubacterium_biforme-0.0190.4070.691
phylumActinobacteria-0.0190.4170.703
classActinobacteria-0.0190.4170.703
speciesParaprevotella_unclassified-0.0190.4190.704
speciesBilophila_unclassified0.0190.4220.706
genusActinobacillus0.0180.4260.706
speciesActinobacillus_unclassified0.0180.4260.706
speciesLactobacillus_oris-0.0180.4260.706
speciesPrevotella_bivia-0.0180.4310.711
genusBilophila0.0180.4340.714
speciesBacteroides_dorei-0.0180.4360.714
speciesRuminococcus_lactaris-0.0180.4370.714
speciesOdoribacter_laneus-0.0180.4430.717
speciesBacteroides_nordii0.0180.4440.717
familyRuminococcaceae-0.0180.4450.717
genusEnterococcus0.0180.4450.717
genusDesulfovibrio0.0170.4510.719
familyAcidaminococcaceae0.0170.4520.719
phylumBacteroidetes0.0170.4560.719
classBacteroidia0.0170.4560.719
orderBacteroidales0.0170.4560.719
familyEnterococcaceae0.0170.4570.719
genusBurkholderiales_noname0.0170.4590.719
speciesBurkholderiales_bacterium_1_1_470.0170.4590.719
speciesMitsuokella_multacida0.0170.460.719
speciesLactococcus_lactis-0.0170.4650.72
speciesLactobacillus_amylovorus-0.0170.4660.72
speciesCoprobacillus_unclassified0.0170.4660.72
familyBurkholderiales_noname0.0170.4670.72
speciesDesulfovibrio_piger0.0170.4680.72
orderActinomycetales-0.0170.470.72
speciesBifidobacterium_bifidum0.0170.4720.721
familyPropionibacteriaceae-0.0170.4740.721
speciesStreptococcus_lutetiensis0.0170.4750.721
speciesBifidobacterium_angulatum-0.0160.480.726
speciesPorphyromonas_asaccharolytica-0.0160.4840.73
speciesAlistipes_putredinis-0.0160.4870.732
genusProteus-0.0160.4910.733
speciesStreptococcus_pasteurianus-0.0160.4910.733
speciesBifidobacterium_catenulatum-0.0160.4960.739
genusClostridiales_noname0.0150.5060.748
speciesLactococcus_phage_phi7-0.0150.5070.748
speciesParaprevotella_clara-0.0150.5070.748
familyLachnospiraceae-0.0150.5110.748
speciesPeptostreptococcus_anaerobius0.0150.5110.748
speciesAlistipes_shahii-0.0150.5120.748
genusAcidaminococcaceae_unclassified-0.0150.5220.753
genusLachnospiraceae_noname-0.0150.5220.753
speciesOscillibacter_sp_KLE_1728-0.0150.5230.753
speciesBacteroides_ovatus0.0150.5240.753
speciesClostridiales_bacterium_1_7_47FAA0.0150.5250.753
speciesButyrivibrio_crossotus-0.0150.5280.753
speciesHaemophilus_parainfluenzae0.0150.5280.753
genusSolobacterium0.0150.530.753
speciesSolobacterium_moorei0.0150.530.753
speciesClostridium_spiroforme-0.0140.5350.758
speciesEubacterium_limosum0.0140.5370.759
genusHaemophilus0.0140.5390.759
speciesLactobacillus_reuteri-0.0140.5410.76
speciesCoprobacillus_sp_D6-0.0140.5470.762
speciesEggerthella_lenta0.0140.5490.762
speciesLactobacillus_acidophilus-0.0140.5530.762
speciesRuminococcus_sp_JC304-0.0140.5530.762
speciesMegamonas_hypermegale0.0140.5540.762
orderPasteurellales0.0140.5580.762
familyPasteurellaceae0.0140.5580.762
familyRikenellaceae-0.0140.5590.762
genusAlistipes-0.0140.5590.762
speciesEubacterium_ventriosum0.0140.5590.762
speciesLactococcus_phage_936_sensu_lato-0.0130.560.762
speciesCollinsella_unclassified-0.0130.5660.765
speciesClostridium_sp_KLE_1755-0.0130.5660.765
genusAnaerotruncus-0.0130.5720.768
speciesProteus_mirabilis-0.0130.5730.768
speciesBacteroides_thetaiotaomicron0.0130.5730.768
speciesBacteroides_intestinalis-0.0130.5770.772
genusPhascolarctobacterium0.0130.5830.774
speciesPhascolarctobacterium_succinatutens0.0130.5830.774
genusLambdalikevirus-0.0130.5870.774
orderAeromonadales0.0120.5890.774
speciesRuminococcus_bromii-0.0130.5890.774
genusMegamonas0.0120.5910.774
speciesLachnospiraceae_bacterium_1_1_57FAA0.0120.5930.774
speciesBacteroides_oleiciplenus-0.0120.5940.774
speciesParabacteroides_sp_D13-0.0120.5940.774
speciesMegamonas_unclassified0.0120.60.78
speciesRuminococcus_callidus0.0120.6050.781
speciesBacteroides_salanitronis-0.0120.6080.781
speciesLactococcus_phage_bIL67-0.0120.6080.781
genusRothia0.0120.6120.781
familyMicrococcaceae0.0120.6130.781
speciesOlsenella_unclassified0.0120.6130.781
speciesVeillonella_unclassified0.0120.6130.781
genusParvimonas-0.0120.6180.781
speciesParvimonas_unclassified-0.0120.6180.781
speciesSutterella_parvirubra-0.0110.6240.781
speciesBacteroides_eggerthii0.0110.6240.781
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0110.6240.781
speciesLactobacillus_delbrueckii-0.0110.6280.781
speciesBifidobacterium_dentium0.0110.6290.781
speciesBacteroides_plebeius0.0110.6290.781
genusPorphyromonas-0.0110.6310.781
genusParasutterella0.0110.6320.781
speciesBacteroides_sp_4_3_47FAA-0.0110.6320.781
speciesParasutterella_excrementihominis0.0110.6320.781
speciesParabacteroides_distasonis-0.0110.6350.782
speciesErysipelotrichaceae_bacterium_3_1_53-0.0110.6360.782
speciesEggerthella_sp_1_3_56FAA-0.0110.640.784
speciesFusobacterium_mortiferum0.0110.6410.784
speciesBacteroides_barnesiae-0.0110.6490.792
phylumFirmicutes-0.010.6540.792
genusRuminococcaceae_noname-0.010.6560.792
speciesStreptococcus_anginosus0.010.6560.792
speciesRuminococcaceae_bacterium_D16-0.010.6560.792
speciesKlebsiella_sp_MS_92_3-0.010.6580.792
genusMyoviridae_noname-0.010.6670.801
speciesLachnospiraceae_bacterium_2_1_46FAA0.010.670.803
orderLactobacillales0.010.6720.803
genusTunalikevirus-0.010.6760.804
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.010.6760.804
genusLactococcus-0.010.6780.804
familySutterellaceae0.0090.6850.809
speciesKlebsiella_phage_KP36-0.0090.6860.809
speciesRoseburia_unclassified-0.0090.6870.809
classBacilli0.0090.6970.818
speciesHoldemania_filiformis-0.0090.7090.83
speciesPeptostreptococcus_stomatis0.0080.7160.835
genusPeptoniphilus0.0080.7180.835
speciesStreptococcus_phage_Sfi21-0.0080.7180.835
speciesDialister_succinatiphilus-0.0080.7220.837
speciesLactobacillus_casei_paracasei-0.0080.7250.839
speciesVeillonella_dispar0.0080.7380.852
speciesRoseburia_inulinivorans-0.0080.7410.853
genusSlackia-0.0070.7490.856
genusPrevotella-0.0070.7490.856
speciesEnterobacter_aerogenes0.0070.7540.856
speciesParabacteroides_sp_20_3-0.0070.7550.856
speciesEnterococcus_faecalis0.0070.7560.856
speciesClostridium_sp_ATCC_BAA_4420.0070.7560.856
speciesParabacteroides_goldsteinii-0.0070.7560.856
speciesErysipelotrichaceae_bacterium_6_1_45-0.0070.7610.858
speciesEubacterium_eligens0.0070.7620.858
speciesLactobacillus_fermentum-0.0070.7650.859
speciesHoldemania_unclassified-0.0070.7660.859
classErysipelotrichia0.0070.7720.859
orderErysipelotrichales0.0070.7720.859
familyErysipelotrichaceae0.0070.7720.859
familyStreptococcaceae-0.0070.7760.862
familyPrevotellaceae-0.0070.7790.863
speciesBacteroides_fragilis0.0060.7810.863
genusButyricimonas-0.0060.7960.876
speciesButyricimonas_synergistica-0.0060.7960.876
familyClostridiales_Family_XI_Incertae_Sedis-0.0060.8090.888
speciesStreptococcus_vestibularis-0.0050.8120.889
familyOscillospiraceae0.0050.8170.891
genusOscillibacter0.0050.8170.891
genusStreptococcus-0.0050.8210.893
speciesBacteroides_salyersiae-0.0050.8230.893
genusHoldemania0.0050.8270.893
speciesFusobacterium_ulcerans-0.0050.8270.893
speciesParabacteroides_unclassified-0.0040.8480.914
genusErysipelotrichaceae_noname-0.0040.8660.931
orderPseudomonadales0.0040.8730.936
speciesBacteroides_clarus0.0040.8780.937
speciesStreptococcus_salivarius-0.0040.8790.937
genusCatenibacterium0.0030.8810.937
speciesCatenibacterium_mitsuokai0.0030.8810.937
speciesOscillibacter_sp_KLE_17450.0030.8840.938
speciesPorphyromonas_uenonis0.0030.8880.94
speciesCollinsella_intestinalis-0.0030.8910.94
speciesVeillonella_atypica-0.0030.8920.94
speciesParabacteroides_johnsonii-0.0030.8960.942
speciesPrevotella_copri-0.0030.8990.943
speciesLactococcus_phage_P680-0.0030.9050.945
speciesOscillibacter_unclassified0.0030.9050.945
speciesBlautia_producta-0.0020.9270.966
speciesGemella_morbillorum0.0020.9320.968
speciesSlackia_piriformis-0.0020.9330.968
speciesBifidobacterium_longum0.0020.9410.974
speciesAlistipes_indistinctus0.0010.950.981
speciesParabacteroides_merdae0.0010.9580.987
speciesLachnospiraceae_bacterium_8_1_57FAA0.0010.9690.991
speciesHaemophilus_sputorum0.0010.9720.991
speciesWeissella_cibaria-0.0010.9730.991
speciesBacteroides_caccae0.0010.9750.991
speciesDesulfovibrio_desulfuricans0.0010.9770.991
orderBifidobacteriales-0.0010.9780.991
familyBifidobacteriaceae-0.0010.9780.991
speciesAcidaminococcus_unclassified-0.0010.980.991
speciesBacteroides_pectinophilus-0.0010.9820.991
speciesCoprococcus_comes0.00.9830.991
genusPantoea0.00.9940.996
genusBifidobacterium0.00.9940.996
speciesPantoea_unclassified0.00.9940.996
speciesEnterococcus_faecium0.00.9960.996
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
ObesityDenmark1691230.01.88834144569e-080.2339429732991226740.3374
Type II diabetesChina1831859.54583789495e-070.0006747326828350.2501106500011476848.8053
Rheumatoid arthritisChina127989.66824971567e-059.50254484981e-070.5150710159071796859.9193
Type II diabetesDenmark752770.07.78400290588e-090.5975697737252246573.6388
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382