MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-09-15 22:47:51 PST
Job id & description: 2116, tibA adhesin from ETEC H10407
Query type: protein
Count queries & homologs: 1, 12
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
AAD41751.1136280CompleteK12687COG3468ProteobacteriaEscherichia100.0100.0100.0
AAD41751.157355CompleteK12687COG3468ProteobacteriaEscherichia93.4372.3486.47
AAD41751.1213049CompleteK12681COG3468ProteobacteriaEscherichia100.0100.067.24
AAD41751.1137436CompleteK12687COG3468ProteobacteriaEscherichia93.4392.2965.72
AAD41751.193169CompleteK12681COG3468ProteobacteriaEscherichia93.2383.9732.1
AAD41751.1221789CompleteK12683COG3468unknownunknown80.1885.3732.69
AAD41751.1203550CompleteK12681COG3468ProteobacteriaEscherichia95.6597.831.49
AAD41751.1218021CompleteK12682COG3468Proteobacteriaunknown82.7192.4332.24
AAD41751.1203795CompleteK12681COG3468ProteobacteriaEscherichia95.6597.831.08
AAD41751.1290552CompleteK12681COG3468ProteobacteriaEscherichia79.1793.5232.02
AAD41751.1292527CompleteK12681COG3468ProteobacteriaEscherichia84.8396.3630.14
AAD41751.1148103CompleteK12687COG3468ProteobacteriaEscherichia73.3178.3331.27
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.8160.00.0
orderEnterobacteriales0.8650.00.0
familyEnterobacteriaceae0.8650.00.0
genusEscherichia0.9050.00.0
speciesEscherichia_coli0.9050.00.0
phylumProteobacteria0.6225.15e-2014.05e-199
speciesEscherichia_unclassified0.5235.25e-1323.54e-130
genusKlebsiella0.4757.04e-1064.15e-104
speciesKlebsiella_pneumoniae0.4483.31e-931.74e-91
genusPantoea0.4115.03e-772.16e-75
speciesPantoea_unclassified0.4115.03e-772.16e-75
speciesRuminococcus_gnavus0.3581.74e-576.84e-56
familyFusobacteriaceae0.3391.28e-514.65e-50
genusFusobacterium0.3346.6e-502.02e-48
phylumFusobacteria0.3347.27e-502.02e-48
classFusobacteriia0.3347.27e-502.02e-48
orderFusobacteriales0.3347.27e-502.02e-48
speciesClostridium_nexile0.3292.03e-485.32e-47
speciesSubdoligranulum_unclassified-0.3074.33e-421.08e-40
speciesClostridium_bolteae0.3066.26e-421.45e-40
genusEnterobacter0.3066.46e-421.45e-40
genusSubdoligranulum-0.3012.13e-404.57e-39
speciesEnterobacter_cloacae0.2995.64e-401.16e-38
genusCoprobacillus0.2989.62e-401.89e-38
speciesClostridium_hathewayi0.2844.1e-367.74e-35
genusCitrobacter0.2812.32e-354.21e-34
speciesCoprobacillus_unclassified0.284.12e-357.2e-34
speciesAnaerotruncus_unclassified-0.2759.04e-341.52e-32
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2741.44e-332.34e-32
speciesClostridium_ramosum0.2724.42e-336.95e-32
speciesCitrobacter_unclassified0.2717.34e-331.12e-31
speciesEubacterium_siraeum-0.2692.55e-323.76e-31
genusButyrivibrio-0.2652.17e-313.1e-30
speciesCitrobacter_freundii0.2627.91e-311.1e-29
genusCoprococcus-0.2589.14e-301.23e-28
speciesClostridium_symbiosum0.2513.25e-284.26e-27
speciesEubacterium_ramulus-0.2422.2e-262.81e-25
genusBarnesiella-0.248.28e-261e-24
speciesBarnesiella_intestinihominis-0.248.28e-261e-24
genusPseudoflavonifractor-0.2372.75e-253.17e-24
speciesPseudoflavonifractor_capillosus-0.2372.75e-253.17e-24
speciesBacteroides_fragilis0.2355.59e-256.28e-24
familyRuminococcaceae-0.2313.83e-244.2e-23
speciesFusobacterium_ulcerans0.237.11e-247.63e-23
speciesBifidobacterium_adolescentis-0.2273.01e-233.16e-22
speciesSutterella_wadsworthensis-0.2256.04e-236.2e-22
familyClostridiaceae0.2256.24e-236.27e-22
speciesEubacterium_rectale-0.2241.09e-221.07e-21
familyBacteroidales_noname-0.2231.93e-221.79e-21
genusBacteroidales_noname-0.2231.93e-221.79e-21
speciesBacteroidales_bacterium_ph8-0.2231.93e-221.79e-21
genusWeissella0.2222.92e-222.65e-21
genusClostridium0.2213.37e-223e-21
genusEubacterium-0.2213.49e-223.05e-21
familyEubacteriaceae-0.2213.63e-223.12e-21
classClostridia-0.2214.15e-223.44e-21
orderClostridiales-0.2214.15e-223.44e-21
genusSutterella-0.2199.18e-227.47e-21
genusMegasphaera0.2199.58e-227.66e-21
genusEnterococcus0.2181.33e-211.05e-20
familyEnterococcaceae0.2172.62e-212.03e-20
speciesKlebsiella_unclassified0.2164.3e-213.27e-20
speciesButyrivibrio_unclassified-0.2147.16e-215.36e-20
speciesCoprococcus_comes-0.2131.41e-201.04e-19
speciesClostridiales_bacterium_1_7_47FAA0.2112.4e-201.74e-19
speciesLactobacillus_salivarius0.2112.54e-201.82e-19
speciesClostridium_perfringens0.2062.4e-191.69e-18
speciesMegamonas_unclassified0.2053.97e-192.76e-18
genusMegamonas0.2044.52e-193.09e-18
speciesEggerthella_unclassified0.2045.23e-193.53e-18
speciesFusobacterium_varium0.2045.84e-193.88e-18
speciesMitsuokella_unclassified-0.2011.49e-189.77e-18
speciesClostridium_leptum-0.22.22e-181.44e-17
genusFlavonifractor0.22.98e-181.88e-17
speciesFlavonifractor_plautii0.22.98e-181.88e-17
speciesVeillonella_parvula0.1993.9e-182.42e-17
speciesDorea_longicatena-0.1985.97e-183.66e-17
speciesWeissella_confusa0.1979.53e-185.77e-17
genusEggerthella0.1951.55e-179.26e-17
speciesFusobacterium_nucleatum0.1942.87e-171.69e-16
speciesKlebsiella_oxytoca0.1933.32e-171.93e-16
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1933.35e-171.93e-16
speciesCoprococcus_catus-0.1933.46e-171.97e-16
genusDorea-0.1924.77e-172.68e-16
speciesFusobacterium_mortiferum0.1917.34e-174.08e-16
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1918.5e-174.67e-16
speciesMegasphaera_micronuciformis0.191e-165.43e-16
genusMitsuokella-0.191.19e-166.38e-16
genusRuminococcaceae_noname-0.191.29e-166.77e-16
speciesRuminococcaceae_bacterium_D16-0.191.29e-166.77e-16
speciesClostridium_citroniae0.1891.6e-168.3e-16
speciesLactococcus_garvieae0.1873.49e-161.79e-15
speciesC2likevirus_unclassified-0.1865.37e-162.73e-15
speciesRoseburia_hominis-0.1856.64e-163.33e-15
genusCoprobacter-0.1849.25e-164.55e-15
speciesCoprobacter_fastidiosus-0.1849.25e-164.55e-15
familyLeuconostocaceae0.1831.28e-156.23e-15
speciesLactobacillus_mucosae0.1831.49e-157.18e-15
genusC2likevirus-0.1822.3e-151.1e-14
speciesBacteroides_uniformis-0.184e-151.89e-14
speciesEubacterium_hallii-0.184.07e-151.9e-14
genusVeillonella0.184.42e-152.05e-14
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1795.42e-152.48e-14
speciesAlistipes_senegalensis-0.1797.14e-153.19e-14
familyRikenellaceae-0.1797.17e-153.19e-14
genusAlistipes-0.1797.17e-153.19e-14
speciesCollinsella_aerofaciens-0.1788.35e-153.68e-14
speciesStreptococcus_anginosus0.1789.27e-154.05e-14
speciesEnterococcus_faecalis0.1771.22e-145.28e-14
phylumFirmicutes-0.1771.28e-145.49e-14
speciesStreptococcus_infantarius0.1761.71e-147.27e-14
genusCollinsella-0.1727.22e-143.04e-13
speciesCoprococcus_sp_ART55_1-0.1727.42e-143.1e-13
classBacilli0.1727.58e-143.12e-13
orderLactobacillales0.1727.59e-143.12e-13
phylumSynergistetes0.1691.83e-137.26e-13
classSynergistia0.1691.83e-137.26e-13
orderSynergistales0.1691.83e-137.26e-13
familySynergistaceae0.1691.83e-137.26e-13
speciesAnaerostipes_hadrus-0.1691.9e-137.47e-13
genusAnaerotruncus-0.1692.03e-137.92e-13
genusPyramidobacter0.1665.39e-132.07e-12
speciesPyramidobacter_piscolens0.1665.39e-132.07e-12
speciesRuminococcus_lactaris-0.1648.84e-133.36e-12
speciesAlistipes_shahii-0.1631.18e-124.46e-12
speciesStreptococcus_thermophilus-0.1631.2e-124.5e-12
speciesAlistipes_putredinis-0.1621.73e-126.43e-12
speciesBacteroides_stercoris0.163.01e-121.11e-11
genusPrevotella0.1594.16e-121.52e-11
speciesDorea_formicigenerans-0.1587.21e-122.62e-11
speciesOscillibacter_unclassified-0.1577.53e-122.71e-11
speciesLachnospiraceae_bacterium_6_1_63FAA0.1578.26e-122.95e-11
genusOdoribacter-0.1579.46e-123.36e-11
speciesWeissella_cibaria0.1561.1e-113.87e-11
speciesBifidobacterium_pseudocatenulatum0.1561.21e-114.23e-11
speciesAnaerostipes_unclassified0.1551.72e-115.97e-11
genusClostridiales_noname0.1532.57e-118.85e-11
speciesBacteroides_intestinalis0.1524.2e-111.44e-10
familySutterellaceae-0.156.82e-112.32e-10
speciesPrevotella_stercorea0.157.24e-112.44e-10
speciesEnterobacter_aerogenes0.157.51e-112.51e-10
speciesVeillonella_dispar0.157.83e-112.6e-10
speciesOdoribacter_splanchnicus-0.1481.29e-104.26e-10
phylumVerrucomicrobia-0.1462.57e-108.14e-10
classVerrucomicrobiae-0.1462.57e-108.14e-10
orderVerrucomicrobiales-0.1462.57e-108.14e-10
familyVerrucomicrobiaceae-0.1462.57e-108.14e-10
genusAkkermansia-0.1462.57e-108.14e-10
speciesAkkermansia_muciniphila-0.1462.57e-108.14e-10
familyOscillospiraceae-0.1452.92e-109.13e-10
genusOscillibacter-0.1452.92e-109.13e-10
speciesEnterococcus_faecium0.1426.45e-101.99e-09
speciesVeillonella_unclassified0.1426.45e-101.99e-09
genusBlautia0.141.09e-093.34e-09
speciesPrevotella_buccae0.141.22e-093.72e-09
speciesParaprevotella_xylaniphila-0.141.32e-093.99e-09
speciesMegasphaera_unclassified0.1391.45e-094.36e-09
familyLactobacillaceae0.1391.54e-094.57e-09
speciesLachnospiraceae_bacterium_2_1_46FAA0.1391.54e-094.57e-09
speciesMegamonas_rupellensis0.1391.56e-094.6e-09
speciesButyrivibrio_crossotus-0.1391.57e-094.6e-09
genusLactobacillus0.1381.85e-095.39e-09
orderBurkholderiales-0.1382.18e-096.31e-09
speciesMegamonas_hypermegale0.1354.22e-091.21e-08
speciesStreptococcus_mitis_oralis_pneumoniae0.1354.63e-091.32e-08
genusSolobacterium0.1354.97e-091.4e-08
speciesSolobacterium_moorei0.1354.97e-091.4e-08
speciesRuminococcus_sp_5_1_39BFAA-0.1355e-091.4e-08
speciesBacteroides_nordii0.1346.21e-091.73e-08
familyBacillales_noname0.1346.46e-091.78e-08
genusGemella0.1346.46e-091.78e-08
speciesBacteroides_plebeius0.1337.2e-091.98e-08
classBetaproteobacteria-0.1337.33e-092e-08
speciesStreptococcus_salivarius0.1337.77e-092.11e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1338.25e-092.23e-08
speciesParaprevotella_unclassified-0.1329.03e-092.42e-08
familyPorphyromonadaceae-0.1311.34e-083.57e-08
genusParaprevotella-0.1311.46e-083.87e-08
genusPeptostreptococcus0.131.66e-084.38e-08
genusFaecalibacterium-0.131.89e-084.93e-08
speciesFaecalibacterium_prausnitzii-0.131.89e-084.93e-08
genusMorganella0.1292.09e-085.39e-08
speciesMorganella_morganii0.1292.09e-085.39e-08
familySiphoviridae-0.1292.35e-086.03e-08
speciesStreptococcus_pasteurianus0.1283.14e-088.01e-08
speciesPrevotella_copri0.1273.36e-088.53e-08
speciesBifidobacterium_dentium0.1273.45e-088.71e-08
speciesAlistipes_onderdonkii-0.1273.53e-088.84e-08
familyPeptostreptococcaceae0.1273.54e-088.84e-08
speciesBacteroides_thetaiotaomicron0.1264.09e-081.02e-07
classEpsilonproteobacteria0.1264.14e-081.02e-07
orderCampylobacterales0.1264.14e-081.02e-07
speciesClostridium_clostridioforme0.1264.49e-081.1e-07
genusCampylobacter0.1264.73e-081.15e-07
familyCampylobacteraceae0.1247.13e-081.73e-07
speciesParaprevotella_clara-0.1211.55e-073.73e-07
speciesVeillonella_atypica0.121.74e-074.17e-07
speciesLactobacillus_sanfranciscensis0.121.84e-074.39e-07
familyClostridiales_noname0.122.07e-074.91e-07
familyStreptococcaceae0.1183.04e-077.17e-07
speciesMethanobrevibacter_smithii-0.1164.94e-071.16e-06
genusMethanobrevibacter-0.1165.16e-071.21e-06
speciesEnterobacteria_phage_HK5440.1165.46e-071.27e-06
genusPeptostreptococcaceae_noname0.1155.76e-071.33e-06
speciesOdoribacter_unclassified-0.1156.24e-071.44e-06
orderBacillales0.1147.51e-071.72e-06
phylumEuryarchaeota-0.1148.12e-071.85e-06
speciesRoseburia_intestinalis-0.1148.27e-071.88e-06
speciesLactobacillus_fermentum0.1148.35e-071.88e-06
speciesKlebsiella_sp_MS_92_30.1148.37e-071.88e-06
speciesStreptococcus_lutetiensis0.1139.77e-072.19e-06
genusRuminococcus-0.1131.03e-062.29e-06
speciesClostridium_bartlettii0.1121.28e-062.84e-06
classMethanobacteria-0.1121.33e-062.91e-06
orderMethanobacteriales-0.1121.33e-062.91e-06
familyMethanobacteriaceae-0.1121.33e-062.91e-06
speciesBlautia_hydrogenotrophica-0.1111.45e-063.15e-06
speciesAcidaminococcus_intestini0.1111.65e-063.57e-06
speciesCoprococcus_eutactus-0.111.86e-064.01e-06
genusStreptococcus0.112.05e-064.4e-06
speciesBacteroides_salyersiae0.1092.28e-064.87e-06
speciesHaemophilus_parainfluenzae0.1092.5e-065.32e-06
speciesBifidobacterium_catenulatum-0.1082.87e-066.07e-06
orderCoriobacteriales-0.1082.94e-066.17e-06
familyCoriobacteriaceae-0.1082.94e-066.17e-06
speciesParabacteroides_merdae-0.1083.13e-066.54e-06
genusHaemophilus0.1073.45e-067.17e-06
speciesStreptococcus_australis0.1073.91e-068.09e-06
orderPasteurellales0.1055.21e-061.07e-05
familyPasteurellaceae0.1055.21e-061.07e-05
speciesEubacterium_eligens-0.1021.03e-052.1e-05
speciesClostridium_sp_ATCC_BAA_4420.1021.06e-052.16e-05
speciesEubacterium_ventriosum-0.11.57e-053.18e-05
familyMyoviridae0.11.59e-053.21e-05
speciesBacteroides_sp_3_1_190.0991.85e-053.72e-05
genusProteus0.0991.87e-053.74e-05
speciesPeptostreptococcus_stomatis0.0991.96e-053.9e-05
genusAcidaminococcaceae_unclassified-0.0982.24e-054.44e-05
speciesRoseburia_unclassified-0.0982.3e-054.54e-05
speciesClostridium_asparagiforme0.0982.36e-054.64e-05
speciesAggregatibacter_segnis0.0972.48e-054.86e-05
familyLachnospiraceae-0.0972.82e-055.5e-05
speciesClostridium_sp_L2_50-0.0962.97e-055.76e-05
speciesLactobacillus_amylovorus0.0962.98e-055.76e-05
speciesPrevotella_bivia0.0963.33e-056.42e-05
speciesAlistipes_sp_HGB5-0.0953.86e-057.41e-05
speciesParabacteroides_goldsteinii0.0944.68e-058.94e-05
genusAdlercreutzia-0.0935.17e-059.8e-05
speciesAdlercreutzia_equolifaciens-0.0935.17e-059.8e-05
speciesProteus_mirabilis0.0935.2e-059.82e-05
familyPropionibacteriaceae-0.0935.3e-059.97e-05
genusLambdalikevirus0.0935.49e-050.000103
genusAggregatibacter0.0935.68e-050.000106
speciesRuminococcus_obeum-0.0935.79e-050.000108
speciesEubacterium_biforme-0.0935.82e-050.000108
speciesLachnospiraceae_bacterium_1_4_56FAA0.0935.95e-050.00011
speciesMegamonas_funiformis0.0917.45e-050.000137
speciesBacteroides_oleiciplenus0.0917.62e-050.000139
speciesLachnospiraceae_bacterium_5_1_57FAA0.0918.48e-050.000155
speciesMegasphaera_elsdenii0.099.35e-050.00017
orderCaudovirales-0.090.0001020.000184
speciesLactobacillus_crispatus0.090.0001060.000191
speciesRuminococcus_champanellensis-0.0890.0001110.000199
speciesOlsenella_unclassified-0.0880.000140.00025
familyClostridiales_Family_XI_Incertae_Sedis0.0880.0001450.000258
speciesGemella_morbillorum0.0870.0001520.00027
speciesAlistipes_indistinctus-0.0870.0001650.000292
speciesLeuconostoc_lactis0.0870.0001740.000306
speciesAnaerotruncus_colihominis0.0870.0001760.000309
genusCatenibacterium-0.0860.0001830.000319
speciesCatenibacterium_mitsuokai-0.0860.0001830.000319
familyVeillonellaceae0.0860.0001980.000344
genusAnaerostipes-0.0860.0002110.000365
familyActinomycetaceae0.0850.0002240.000386
speciesCampylobacter_concisus0.0840.0002590.000445
speciesAlistipes_finegoldii-0.0840.0002760.000472
speciesEubacterium_limosum0.0840.0002960.000504
speciesPorphyromonas_uenonis0.0830.0003290.000557
speciesAlistipes_sp_AP11-0.0830.0003290.000557
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0830.0003340.000563
speciesBacteroides_pectinophilus-0.0820.0003680.000618
genusDialister-0.0820.0003730.000624
speciesHaemophilus_paraphrohaemolyticus0.0820.0003930.000655
speciesErysipelotrichaceae_bacterium_21_3-0.0820.0003940.000655
speciesStreptococcus_gordonii0.0810.0004310.000714
speciesBacteroides_coprocola0.0810.0004330.000715
speciesBifidobacterium_animalis-0.0810.0004770.000784
genusActinomyces0.080.0005230.000857
speciesEggerthella_lenta0.080.0005570.00091
genusBilophila0.0790.0006050.000985
genusPhascolarctobacterium-0.0790.000650.00105
speciesPhascolarctobacterium_succinatutens-0.0790.000650.00105
speciesLactobacillus_acidophilus-0.0790.0006590.00106
classDeltaproteobacteria0.0780.0007120.00114
orderDesulfovibrionales0.0780.0007120.00114
familyDesulfovibrionaceae0.0780.0007120.00114
speciesBacteroides_xylanisolvens0.0780.0007270.00116
speciesBlautia_producta0.0780.000730.00116
speciesBilophila_unclassified0.0780.0007590.0012
genusPeptoniphilus0.0770.0008450.00133
speciesPropionibacterium_freudenreichii-0.0760.0009410.00147
genusPorphyromonas0.0760.0009420.00147
speciesLactobacillus_plantarum0.0750.001220.0019
phylumViruses_noname-0.0740.001290.002
classViruses_noname-0.0740.001290.002
genusRoseburia-0.0740.001360.0021
speciesBifidobacterium_breve0.0740.00140.00215
speciesLachnospiraceae_bacterium_1_1_57FAA0.0730.001540.00236
familyAcidaminococcaceae-0.0720.001760.00269
speciesDialister_invisus-0.0720.001930.00294
speciesBilophila_wadsworthia0.0720.001940.00294
speciesCoprobacillus_sp_29_10.0710.002020.00306
speciesBacteroides_finegoldii0.070.00230.00347
speciesStreptococcus_vestibularis0.0690.002670.00401
genusSutterellaceae_unclassified-0.0690.002740.00411
speciesStreptococcus_sanguinis0.0680.003140.00469
familyBacteroidaceae0.0680.003290.00488
genusBacteroides0.0680.003290.00488
speciesBifidobacterium_angulatum-0.0680.003360.00497
speciesRothia_mucilaginosa0.0660.004520.00667
genusOlsenella-0.0660.004540.00668
genusBifidobacterium-0.0650.005110.00749
speciesLactobacillus_vaginalis0.0630.006440.00941
phylumActinobacteria-0.0620.007070.0103
classActinobacteria-0.0620.007070.0103
genusSiphoviridae_noname-0.0620.00770.0111
genusPropionibacterium-0.0620.007780.0112
speciesHoldemania_unclassified-0.0610.007860.0113
orderBifidobacteriales-0.0610.007870.0113
familyBifidobacteriaceae-0.0610.007870.0113
speciesBacteroides_salanitronis-0.0610.008230.0117
genusMyoviridae_noname0.0610.008680.0123
speciesBacteroides_sp_1_1_6-0.060.008940.0127
speciesAcidaminococcus_fermentans0.060.009390.0133
speciesCoprobacillus_sp_D60.060.009440.0133
speciesLactococcus_phage_936_sensu_lato-0.060.009460.0133
speciesLactococcus_phage_P680-0.0590.01070.015
speciesBacteroides_massiliensis0.0580.01240.0173
familyOxalobacteraceae-0.0580.01260.0175
genusOxalobacter-0.0580.01280.0177
speciesOxalobacter_formigenes-0.0580.01280.0177
speciesMethanobrevibacter_unclassified-0.0580.01290.0178
genusLeuconostoc0.0570.01320.0182
familyMicrococcaceae0.0570.01370.0188
genusRothia0.0570.01440.0197
genusParabacteroides-0.0560.01520.0207
speciesParabacteroides_johnsonii0.0560.01550.0211
speciesPorphyromonas_asaccharolytica0.0550.01660.0225
speciesLactobacillus_gasseri0.0550.01720.0233
speciesBacteroides_barnesiae-0.0550.01760.0237
genusAcidaminococcus0.0520.02430.0326
speciesRuminococcus_bromii-0.0520.02430.0326
genusActinobacillus0.0520.02530.0337
speciesActinobacillus_unclassified0.0520.02530.0337
speciesParabacteroides_sp_D13-0.0520.02550.0339
orderAeromonadales0.0510.02610.0345
speciesBifidobacterium_longum-0.0510.02610.0345
orderActinomycetales0.050.03060.0403
speciesBacteroides_eggerthii0.050.03160.0415
speciesAlistipes_unclassified-0.0490.03490.0458
speciesDesulfovibrio_piger-0.0480.03710.0485
speciesOscillibacter_sp_KLE_1728-0.0480.03850.0502
speciesStreptococcus_mutans0.0480.03990.0519
speciesLactobacillus_oris0.0480.040.0519
speciesLactococcus_phage_jm2-0.0470.04020.052
genusParvimonas0.0470.04040.0521
speciesParvimonas_unclassified0.0470.04120.053
speciesLactococcus_lactis-0.0470.04250.0545
genusTuricibacter-0.0470.04310.0551
speciesCollinsella_tanakaei0.0450.04960.0633
genusBurkholderiales_noname0.0450.05340.0677
speciesBurkholderiales_bacterium_1_1_470.0450.05340.0677
speciesEubacterium_dolichum0.0450.05350.0677
speciesTuricibacter_unclassified-0.0440.05440.0687
speciesHaemophilus_sputorum0.0440.05690.0716
familyBurkholderiales_noname0.0440.0580.0728
speciesAcidaminococcus_unclassified-0.0430.06070.076
speciesEubacterium_cylindroides-0.0430.06270.0781
speciesLactobacillus_ruminis-0.0430.06280.0781
speciesErysipelotrichaceae_bacterium_2_2_44A0.0430.06290.0781
speciesParabacteroides_unclassified0.0430.06570.0814
speciesOscillibacter_sp_KLE_1745-0.0420.0690.0853
classNegativicutes0.0410.07390.0908
orderSelenomonadales0.0410.07390.0908
classErysipelotrichia0.0390.08930.109
orderErysipelotrichales0.0390.08930.109
familyErysipelotrichaceae0.0390.08930.109
genusGordonibacter-0.0390.09460.115
speciesGordonibacter_pamelaeae-0.0390.09460.115
speciesBacteroides_dorei-0.0380.09730.118
familyPrevotellaceae0.0380.1040.126
speciesLactobacillus_reuteri0.0370.1060.128
speciesEggerthella_sp_1_3_56FAA-0.0360.1230.148
speciesLactococcus_phage_bIL67-0.0360.1240.149
genusParasutterella0.0350.1250.149
speciesParasutterella_excrementihominis0.0350.1250.149
speciesLactobacillus_casei_paracasei-0.0350.1260.15
speciesDesulfovibrio_desulfuricans-0.0350.1270.151
speciesDorea_unclassified-0.0350.1290.153
speciesSubdoligranulum_sp_4_3_54A2FAA0.0350.1310.155
speciesRoseburia_inulinivorans-0.0350.1340.158
speciesClostridium_sp_KLE_1755-0.0340.1380.162
speciesBacteroides_sp_2_1_22-0.0340.1450.17
speciesHoldemania_sp_AP20.0330.1590.186
speciesLactococcus_phage_phi7-0.0310.1840.214
speciesCoriobacteriaceae_bacterium_phI-0.0310.1860.216
speciesPeptostreptococcus_anaerobius0.030.1920.223
genusSlackia0.030.1970.228
genusClostridiaceae_noname0.030.20.23
speciesClostridiaceae_bacterium_JC1180.030.20.23
speciesSutterella_parvirubra0.0290.2080.239
speciesTuricibacter_sanguinis-0.0280.2270.26
genusCoriobacteriaceae_noname-0.0280.2280.261
speciesHoldemania_filiformis-0.0270.2360.269
orderPseudomonadales0.0260.2580.293
speciesMitsuokella_multacida-0.0250.280.318
orderViruses_noname-0.0250.2890.327
speciesRuminococcus_sp_JC3040.0240.2990.338
speciesErysipelotrichaceae_bacterium_6_1_450.0240.30.338
genusButyricicoccus0.0240.3080.345
speciesButyricicoccus_pullicaecorum0.0240.3080.345
speciesBacteroides_coprophilus0.0230.3190.357
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0230.3230.36
speciesCollinsella_intestinalis0.0230.3290.366
speciesBacteroides_vulgatus-0.0220.3430.381
speciesBacteroides_cellulosilyticus-0.0210.3560.394
genusDesulfovibrio-0.0210.3580.396
speciesErysipelotrichaceae_bacterium_3_1_530.0210.3630.399
speciesParabacteroides_sp_20_3-0.0210.3630.399
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0210.3680.404
speciesLactobacillus_delbrueckii-0.0210.3730.408
speciesDialister_succinatiphilus-0.020.3850.421
speciesPeptostreptococcaceae_noname_unclassified-0.0190.4090.446
speciesBacteroides_caccae0.0150.5030.547
speciesRuminococcus_torques0.0150.5110.554
speciesBacteroides_clarus0.0150.5150.558
speciesCollinsella_unclassified-0.0140.5320.575
familyViruses_noname0.0130.5810.625
genusViruses_noname0.0130.5810.625
speciesBacteroides_faecis0.0130.5860.629
genusStaphylococcus-0.0120.6090.652
genusLactococcus0.0110.6440.688
familyPodoviridae0.0110.6490.691
genusHoldemania-0.010.6510.692
speciesParabacteroides_distasonis0.010.680.721
speciesBacteroides_ovatus0.0090.6960.737
speciesEubacterium_sp_3_1_31-0.0080.7290.769
genusTunalikevirus0.0080.730.769
speciesBacteroides_fluxus0.0080.7410.779
genusErysipelotrichaceae_noname0.0070.7540.791
phylumBacteroidetes-0.0070.7660.8
classBacteroidia-0.0070.7680.8
orderBacteroidales-0.0070.7680.8
speciesLactobacillus_rhamnosus-0.0060.7850.816
speciesOdoribacter_laneus0.0060.7920.822
speciesStreptococcus_phage_Sfi210.0050.8180.845
familyStaphylococcaceae-0.0050.8210.845
genusLachnospiraceae_noname0.0050.8210.845
genusSuccinatimonas0.0050.8240.845
speciesSuccinatimonas_hippei0.0050.8240.845
speciesSlackia_piriformis-0.0040.8530.873
genusButyricimonas0.0020.9330.949
speciesButyricimonas_synergistica0.0020.9330.949
speciesStreptococcus_parasanguinis-0.0020.9330.949
speciesClostridium_spiroforme0.0020.9410.955
speciesRuminococcus_callidus0.0010.9650.974
genusMethanosphaera-0.0010.9660.974
speciesMethanosphaera_stadtmanae-0.0010.9660.974
speciesKlebsiella_phage_KP36-0.0010.970.976
speciesBacteroides_sp_4_3_47FAA0.00.9930.997
speciesBifidobacterium_bifidum0.00.9950.997
familySuccinivibrionaceae0.00.9970.997
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.007467088606250.001929400053534.59505780171e-124891.60291
Crohns diseaseSpain17660.0163495167290.001753296771340.00205588280528519617.2768
Colorectal cancerAustria64350.02966642398380.007942714995410.00490754218733281.10976
Liver cirrhosisChina1201140.02222571333470.005722483058380.03610188502011361645.7389
ObesityDenmark1691230.002835256253660.006520809946250.2005149544731104036.3027
Type II diabetesChina1831850.02338560327660.01811132858070.5333018006512169171.6845
Rheumatoid arthritisChina127980.009753621221740.00771231526560.6622196385292143971.4943
Type II diabetesSweden53920.002409057708690.007121283118180.8920302386052671390.4605
Ulcerative colitisSpain78660.0006285869429310.001753296771340.9584910061232946797.2059
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382