MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-09-27 01:59:20 PST
Job id & description: 2119, pqqC
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
NC_002947.4:c458779-4580243195818CompleteK06137COG5424ProteobacteriaKlebsiella89.9581.5376.7
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusKlebsiella0.8330.00.0
speciesKlebsiella_pneumoniae0.8760.00.0
orderEnterobacteriales0.5558.85e-1521.04e-149
familyEnterobacteriaceae0.5558.85e-1521.04e-149
classGammaproteobacteria0.5482.92e-1472.76e-145
genusEnterobacter0.5099.88e-1247.77e-122
speciesEnterobacter_cloacae0.5077.47e-1235.04e-121
phylumProteobacteria0.4722.32e-1041.37e-102
genusEscherichia0.4022.09e-731.1e-71
speciesEscherichia_coli0.381.99e-659.39e-64
genusCitrobacter0.371.08e-614.63e-60
speciesCitrobacter_unclassified0.3641.48e-595.82e-58
speciesCitrobacter_freundii0.3632.06e-597.48e-58
speciesSubdoligranulum_unclassified-0.3481.81e-546.1e-53
genusSubdoligranulum-0.3473.88e-541.22e-52
phylumFusobacteria0.3177.62e-452e-43
classFusobacteriia0.3177.62e-452e-43
orderFusobacteriales0.3177.62e-452e-43
genusFusobacterium0.3152.23e-445.54e-43
familyFusobacteriaceae0.3152.85e-446.73e-43
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3122.06e-434.63e-42
speciesKlebsiella_oxytoca0.3011.98e-404.25e-39
speciesEubacterium_siraeum-0.2911e-372.05e-36
speciesEscherichia_unclassified0.2871.14e-362.24e-35
speciesKlebsiella_unclassified0.2781.44e-342.72e-33
speciesAnaerotruncus_unclassified-0.2773.37e-346.12e-33
genusPantoea0.2725.55e-339.36e-32
speciesPantoea_unclassified0.2725.55e-339.36e-32
speciesMegamonas_unclassified0.2661.24e-312.02e-30
genusMegamonas0.2651.77e-312.78e-30
speciesVeillonella_parvula0.2634.94e-317.52e-30
genusPseudoflavonifractor-0.2621.12e-301.6e-29
speciesPseudoflavonifractor_capillosus-0.2621.12e-301.6e-29
speciesClostridium_leptum-0.262.37e-303.29e-29
speciesWeissella_confusa0.2571.17e-291.58e-28
genusVeillonella0.2562.31e-293.03e-28
speciesClostridium_nexile0.2539.28e-291.18e-27
speciesEnterobacter_aerogenes0.254.83e-286e-27
genusWeissella0.2481.15e-271.39e-26
genusButyrivibrio-0.247.99e-269.43e-25
speciesHaemophilus_parainfluenzae0.248.31e-269.57e-25
speciesRuminococcus_gnavus0.2399.47e-261.06e-24
speciesBifidobacterium_adolescentis-0.2391.25e-251.37e-24
speciesClostridium_perfringens0.2381.79e-251.92e-24
genusHaemophilus0.2381.91e-252e-24
genusDorea-0.2356.9e-257.08e-24
orderPasteurellales0.2358.04e-257.91e-24
familyPasteurellaceae0.2358.04e-257.91e-24
speciesLactococcus_garvieae0.2331.48e-241.43e-23
speciesDorea_longicatena-0.2323.22e-243.04e-23
familyRuminococcaceae-0.2315.29e-244.9e-23
genusCoprococcus-0.237.8e-247.08e-23
speciesEubacterium_hallii-0.238.43e-247.51e-23
speciesFusobacterium_mortiferum0.2281.52e-231.33e-22
speciesVeillonella_unclassified0.2281.79e-231.54e-22
genusPrevotella0.2282.09e-231.76e-22
speciesPrevotella_buccae0.2263.7e-233.06e-22
speciesMegasphaera_micronuciformis0.2222.64e-222.15e-21
speciesBacteroides_plebeius0.2214.08e-223.26e-21
genusAnaerotruncus-0.225.77e-224.54e-21
phylumVerrucomicrobia-0.2172.22e-211.59e-20
classVerrucomicrobiae-0.2172.22e-211.59e-20
orderVerrucomicrobiales-0.2172.22e-211.59e-20
familyVerrucomicrobiaceae-0.2172.22e-211.59e-20
genusAkkermansia-0.2172.22e-211.59e-20
speciesAkkermansia_muciniphila-0.2172.22e-211.59e-20
speciesC2likevirus_unclassified-0.2164.19e-212.95e-20
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2164.33e-213.01e-20
speciesWeissella_cibaria0.2156.62e-214.53e-20
speciesFusobacterium_nucleatum0.2121.57e-201.06e-19
genusC2likevirus-0.2122.08e-201.38e-19
classClostridia-0.2112.71e-201.75e-19
orderClostridiales-0.2112.71e-201.75e-19
genusRuminococcaceae_noname-0.214.8e-203.02e-19
speciesRuminococcaceae_bacterium_D16-0.214.8e-203.02e-19
speciesPrevotella_stercorea0.2081.05e-196.52e-19
speciesBacteroides_stercoris0.2061.99e-191.22e-18
genusMegasphaera0.2062.76e-191.67e-18
speciesPrevotella_copri0.2037.54e-194.5e-18
speciesCoprococcus_comes-0.2038.4e-194.96e-18
speciesLactobacillus_salivarius0.2021.34e-187.81e-18
speciesStreptococcus_thermophilus-0.22.57e-181.48e-17
speciesFusobacterium_ulcerans0.22.87e-181.63e-17
genusBarnesiella-0.1993.48e-181.93e-17
speciesBarnesiella_intestinihominis-0.1993.48e-181.93e-17
speciesEubacterium_ramulus-0.1977.59e-184.17e-17
speciesVeillonella_dispar0.1951.66e-179.01e-17
speciesButyrivibrio_unclassified-0.1924.73e-172.54e-16
speciesAnaerostipes_hadrus-0.1925.24e-172.78e-16
speciesCollinsella_aerofaciens-0.1891.46e-167.66e-16
speciesKlebsiella_sp_MS_92_30.1891.58e-168.2e-16
orderCoriobacteriales-0.1891.76e-168.93e-16
familyCoriobacteriaceae-0.1891.76e-168.93e-16
speciesMethanobrevibacter_smithii-0.1892.04e-161.02e-15
speciesStreptococcus_infantarius0.1882.36e-161.17e-15
genusCollinsella-0.1857.83e-163.85e-15
speciesVeillonella_atypica0.1849.28e-164.52e-15
familyOscillospiraceae-0.1849.99e-164.76e-15
genusOscillibacter-0.1849.99e-164.76e-15
speciesErysipelotrichaceae_bacterium_21_3-0.1831.48e-156.99e-15
genusMethanobrevibacter-0.1822.47e-151.15e-14
speciesCoprococcus_catus-0.1822.55e-151.18e-14
familyMyoviridae0.1813.46e-151.59e-14
classMethanobacteria-0.184.13e-151.84e-14
orderMethanobacteriales-0.184.13e-151.84e-14
familyMethanobacteriaceae-0.184.13e-151.84e-14
speciesRuminococcus_sp_5_1_39BFAA-0.1796e-152.65e-14
phylumEuryarchaeota-0.1796.62e-152.89e-14
speciesMegamonas_hypermegale0.1761.75e-147.58e-14
speciesStreptococcus_anginosus0.1752.97e-141.27e-13
phylumFirmicutes-0.1743.59e-141.53e-13
speciesBifidobacterium_pseudocatenulatum0.1735.78e-142.44e-13
speciesMegamonas_rupellensis0.1727.12e-142.97e-13
speciesMegamonas_funiformis0.1691.78e-137.37e-13
speciesOscillibacter_unclassified-0.1691.94e-137.96e-13
speciesMitsuokella_unclassified-0.1691.96e-137.98e-13
genusCampylobacter0.1674.07e-131.64e-12
familyLeuconostocaceae0.1664.37e-131.75e-12
speciesBlautia_hydrogenotrophica-0.1664.92e-131.95e-12
phylumSynergistetes0.1657.07e-132.71e-12
classSynergistia0.1657.07e-132.71e-12
orderSynergistales0.1657.07e-132.71e-12
familySynergistaceae0.1657.07e-132.71e-12
genusPyramidobacter0.1648.69e-133.28e-12
speciesPyramidobacter_piscolens0.1648.69e-133.28e-12
familyCampylobacteraceae0.1631.14e-124.27e-12
genusAggregatibacter0.1631.21e-124.5e-12
genusMitsuokella-0.1631.55e-125.72e-12
classEpsilonproteobacteria0.1621.65e-125.99e-12
orderCampylobacterales0.1621.65e-125.99e-12
speciesBacteroides_uniformis-0.1621.93e-126.95e-12
speciesClostridium_bolteae0.162.98e-121.07e-11
speciesLeuconostoc_lactis0.163.33e-121.18e-11
speciesAggregatibacter_segnis0.1586.99e-122.46e-11
genusAnaerostipes-0.1561.1e-113.85e-11
genusCoprobacter-0.1561.17e-114.03e-11
speciesCoprobacter_fastidiosus-0.1561.17e-114.03e-11
speciesEubacterium_rectale-0.1561.32e-114.51e-11
familyBacteroidales_noname-0.1551.72e-115.76e-11
genusBacteroidales_noname-0.1551.72e-115.76e-11
speciesBacteroidales_bacterium_ph8-0.1551.72e-115.76e-11
familySiphoviridae-0.1542.26e-117.51e-11
speciesBacteroides_coprocola0.1542.39e-117.89e-11
speciesLactobacillus_mucosae0.1532.61e-118.55e-11
speciesSutterella_wadsworthensis-0.1532.65e-118.63e-11
speciesFusobacterium_varium0.1533.3e-111.07e-10
genusRuminococcus-0.1523.84e-111.23e-10
speciesBacteroides_intestinalis0.1523.92e-111.25e-10
speciesBacteroides_fragilis0.1524.16e-111.32e-10
speciesStreptococcus_mitis_oralis_pneumoniae0.1498.88e-112.79e-10
speciesCampylobacter_concisus0.1481.11e-103.47e-10
genusSutterella-0.1471.78e-105.53e-10
genusMorganella0.1471.89e-105.79e-10
speciesMorganella_morganii0.1471.89e-105.79e-10
phylumActinobacteria-0.1471.95e-105.9e-10
classActinobacteria-0.1471.95e-105.9e-10
speciesCoprobacillus_unclassified0.1443.52e-101.06e-09
speciesBifidobacterium_dentium0.1444.33e-101.29e-09
speciesBacteroides_thetaiotaomicron0.1419.02e-102.68e-09
speciesDorea_formicigenerans-0.1411.01e-092.98e-09
genusTunalikevirus0.141.24e-093.64e-09
speciesRuminococcus_obeum-0.1391.63e-094.75e-09
classBacilli0.1382.23e-096.46e-09
genusEubacterium-0.1372.79e-098.01e-09
familyEubacteriaceae-0.1372.8e-098.01e-09
speciesStreptococcus_salivarius0.1363.12e-098.87e-09
orderLactobacillales0.1354.08e-091.15e-08
genusCoprobacillus0.1354.41e-091.24e-08
speciesOlsenella_unclassified-0.1354.56e-091.27e-08
speciesKlebsiella_phage_KP360.1338.47e-092.35e-08
speciesAlistipes_senegalensis-0.1321.14e-083.15e-08
familyPrevotellaceae0.1311.16e-083.18e-08
genusActinobacillus0.1311.18e-083.2e-08
speciesActinobacillus_unclassified0.1311.18e-083.2e-08
speciesStreptococcus_australis0.1311.36e-083.67e-08
speciesClostridium_symbiosum0.1311.41e-083.78e-08
speciesBacteroides_finegoldii0.131.67e-084.45e-08
genusEnterococcus0.1291.92e-085.09e-08
familyEnterococcaceae0.1292.15e-085.67e-08
genusProteus0.1282.61e-086.84e-08
genusMyoviridae_noname0.1273.19e-088.32e-08
speciesRoseburia_hominis-0.1273.26e-088.45e-08
speciesBacteroides_oleiciplenus0.1273.81e-089.83e-08
speciesButyrivibrio_crossotus-0.1264.15e-081.06e-07
speciesBacteroides_salyersiae0.1264.44e-081.13e-07
speciesClostridium_ramosum0.1265e-081.27e-07
familyRikenellaceae-0.1255.23e-081.31e-07
genusAlistipes-0.1255.23e-081.31e-07
genusOdoribacter-0.1255.66e-081.41e-07
speciesClostridiales_bacterium_1_7_47FAA0.1255.75e-081.43e-07
speciesBifidobacterium_animalis-0.1247.17e-081.77e-07
speciesClostridium_hathewayi0.1231.01e-072.48e-07
familyPorphyromonadaceae-0.122.18e-075.33e-07
genusClostridium0.1192.41e-075.86e-07
genusBifidobacterium-0.1192.45e-075.93e-07
speciesClostridium_citroniae0.1182.94e-077.08e-07
speciesMegasphaera_unclassified0.1183.05e-077.31e-07
familyVeillonellaceae0.1183.27e-077.8e-07
genusOlsenella-0.1183.3e-077.83e-07
orderBifidobacteriales-0.1173.67e-078.62e-07
familyBifidobacteriaceae-0.1173.67e-078.62e-07
genusAdlercreutzia-0.1174e-079.3e-07
speciesAdlercreutzia_equolifaciens-0.1174e-079.3e-07
speciesProteus_mirabilis0.1174.07e-079.42e-07
familyLachnospiraceae-0.1174.14e-079.53e-07
familyClostridiaceae0.1174.22e-079.67e-07
familyPropionibacteriaceae-0.1174.25e-079.67e-07
speciesEnterococcus_faecalis0.1174.26e-079.67e-07
genusFlavonifractor0.1164.59e-071.03e-06
speciesFlavonifractor_plautii0.1164.59e-071.03e-06
genusSiphoviridae_noname-0.1165.01e-071.12e-06
speciesCoprococcus_sp_ART55_1-0.1156.13e-071.36e-06
speciesBacteroides_xylanisolvens0.1156.63e-071.47e-06
speciesMethanobrevibacter_unclassified-0.1147.46e-071.65e-06
speciesBacteroides_massiliensis0.1147.84e-071.72e-06
familyPeptostreptococcaceae0.1139.39e-072.05e-06
speciesOdoribacter_splanchnicus-0.1131.01e-062.2e-06
speciesPropionibacterium_freudenreichii-0.1131.05e-062.27e-06
familyStreptococcaceae0.1131.07e-062.31e-06
speciesClostridium_bartlettii0.1111.46e-063.13e-06
speciesAlistipes_onderdonkii-0.1111.65e-063.52e-06
speciesBacteroides_nordii0.111.74e-063.7e-06
speciesRoseburia_unclassified-0.1092.31e-064.89e-06
speciesBifidobacterium_longum-0.1082.77e-065.84e-06
genusPeptostreptococcaceae_noname0.1083.11e-066.52e-06
speciesLactococcus_phage_P680-0.1073.34e-066.98e-06
speciesDialister_invisus-0.1064.14e-068.61e-06
speciesHaemophilus_sputorum0.1055.01e-061.04e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1055.07e-061.04e-05
speciesHaemophilus_paraphrohaemolyticus0.1046.8e-061.4e-05
speciesOdoribacter_unclassified-0.1037.81e-061.6e-05
speciesRuminococcus_torques-0.1038.24e-061.68e-05
genusPropionibacterium-0.1029.51e-061.93e-05
speciesBifidobacterium_catenulatum-0.1021.03e-052.08e-05
speciesOscillibacter_sp_KLE_1745-0.1021.09e-052.19e-05
genusStreptococcus0.1011.16e-052.32e-05
speciesBacteroides_sp_3_1_190.1011.21e-052.41e-05
speciesLactobacillus_sanfranciscensis0.11.38e-052.74e-05
speciesAlistipes_sp_AP11-0.11.46e-052.88e-05
familyBacillales_noname0.11.59e-053.11e-05
genusGemella0.11.59e-053.11e-05
genusDialister-0.0991.97e-053.84e-05
genusLambdalikevirus0.0982.21e-054.29e-05
orderBacillales0.0972.42e-054.68e-05
speciesEnterobacteria_phage_HK5440.0963.19e-056.15e-05
speciesLactobacillus_fermentum0.0935.59e-050.000107
genusSolobacterium0.0935.94e-050.000113
speciesSolobacterium_moorei0.0935.94e-050.000113
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0936.15e-050.000117
familyBacteroidaceae0.0926.6e-050.000124
genusBacteroides0.0926.6e-050.000124
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0927.38e-050.000138
speciesLactobacillus_plantarum0.0917.62e-050.000142
speciesErysipelotrichaceae_bacterium_6_1_45-0.0917.87e-050.000146
speciesAlistipes_unclassified-0.0918.26e-050.000153
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.098.9e-050.000164
speciesStreptococcus_pasteurianus0.099.77e-050.000179
speciesCollinsella_tanakaei0.090.0001020.000187
speciesRuminococcus_champanellensis-0.090.0001050.000191
speciesParabacteroides_goldsteinii0.090.0001060.000192
speciesEubacterium_cylindroides-0.0890.0001070.000194
genusLactobacillus0.0890.0001130.000204
speciesRuminococcus_lactaris-0.0880.0001370.000246
speciesAnaerostipes_unclassified0.0860.0001840.000329
speciesAlistipes_indistinctus-0.0860.0001910.00034
familyAcidaminococcaceae-0.0860.0002040.000362
genusCatenibacterium-0.0850.0002190.000386
speciesCatenibacterium_mitsuokai-0.0850.0002190.000386
familyLactobacillaceae0.0850.0002340.000411
speciesHoldemania_filiformis-0.0840.000280.000489
speciesEggerthella_unclassified0.0830.0003060.000533
classBacteroidia0.0820.000360.000622
orderBacteroidales0.0820.000360.000622
phylumBacteroidetes0.0820.0003610.000622
speciesLachnospiraceae_bacterium_2_1_58FAA0.0820.0003720.000638
speciesStreptococcus_gordonii0.080.0005120.000876
speciesCoprococcus_eutactus-0.080.0005380.000917
speciesAlistipes_shahii-0.080.0005760.000978
genusAcidaminococcaceae_unclassified-0.0790.0006470.00109
genusClostridiales_noname0.0790.000680.00115
speciesBilophila_unclassified0.0760.0009340.00157
genusBilophila0.0740.001290.00216
speciesPeptostreptococcus_stomatis0.0740.001330.00222
speciesLactobacillus_crispatus0.0740.001370.00228
speciesLachnospiraceae_bacterium_6_1_63FAA0.0740.001410.00231
classErysipelotrichia-0.0740.001420.00231
orderErysipelotrichales-0.0740.001420.00231
familyErysipelotrichaceae-0.0740.001420.00231
genusPhascolarctobacterium-0.0740.001420.00231
speciesPhascolarctobacterium_succinatutens-0.0740.001420.00231
genusHoldemania-0.0730.001480.0024
speciesLactobacillus_oris0.0730.001540.00249
speciesStreptococcus_sanguinis0.0730.001630.00262
genusGordonibacter-0.0730.001640.00262
speciesGordonibacter_pamelaeae-0.0730.001640.00262
genusErysipelotrichaceae_noname-0.0730.001690.00269
speciesBacteroides_pectinophilus-0.0730.001690.00269
speciesParaprevotella_xylaniphila-0.0720.001720.00272
genusEggerthella0.0720.001840.0029
speciesDorea_unclassified-0.0720.001970.0031
orderCaudovirales-0.0690.002680.0042
speciesOscillibacter_sp_KLE_1728-0.0680.003120.00488
speciesLachnospiraceae_bacterium_1_1_57FAA0.0680.003320.00517
speciesLachnospiraceae_bacterium_2_1_46FAA0.0680.003470.00539
speciesDesulfovibrio_desulfuricans-0.0670.003740.00579
speciesLactobacillus_vaginalis0.0670.003840.0059
speciesRothia_mucilaginosa0.0670.003840.0059
speciesLactobacillus_acidophilus-0.0660.004060.00622
speciesAlistipes_sp_HGB5-0.0660.004270.00652
speciesBilophila_wadsworthia0.0660.004440.00676
speciesEubacterium_biforme-0.0660.004470.00678
speciesRuminococcus_bromii-0.0650.004660.00705
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0650.004890.00737
speciesAcidaminococcus_unclassified-0.0650.004950.00744
genusPeptostreptococcus0.0650.0050.00749
speciesLactococcus_phage_936_sensu_lato-0.0650.005050.00754
speciesBacteroides_barnesiae-0.0650.005220.00777
genusBurkholderiales_noname0.0640.005570.00824
speciesBurkholderiales_bacterium_1_1_470.0640.005570.00824
familyBurkholderiales_noname0.0640.005830.0086
speciesMegasphaera_elsdenii0.0630.006420.00944
speciesEnterococcus_faecium0.0630.006490.00951
genusParasutterella0.0610.00820.0119
speciesParasutterella_excrementihominis0.0610.00820.0119
speciesAlistipes_finegoldii-0.060.008940.013
speciesBacteroides_eggerthii0.060.008970.013
classNegativicutes0.060.009590.0138
orderSelenomonadales0.060.009590.0138
speciesParabacteroides_sp_D13-0.060.009950.0143
phylumViruses_noname-0.0590.01030.0147
classViruses_noname-0.0590.01030.0147
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0590.01140.0162
speciesOdoribacter_laneus-0.0580.01220.0173
speciesRoseburia_inulinivorans0.0580.01240.0175
speciesBacteroides_sp_1_1_6-0.0580.01270.0179
speciesParabacteroides_johnsonii0.0570.01430.02
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0570.01430.02
speciesLactococcus_phage_jm2-0.0560.0150.0209
speciesClostridium_sp_KLE_1755-0.0550.01640.0228
speciesAlistipes_putredinis-0.0550.01650.0229
genusMethanosphaera-0.0550.01670.023
speciesMethanosphaera_stadtmanae-0.0550.01670.023
speciesCollinsella_intestinalis0.0550.01830.0252
familyOxalobacteraceae-0.0540.01950.0268
speciesHoldemania_unclassified-0.0540.02060.0282
genusDesulfovibrio-0.0530.02070.0282
genusClostridiaceae_noname-0.0530.02150.0292
speciesClostridiaceae_bacterium_JC118-0.0530.02150.0292
speciesStreptococcus_lutetiensis0.0530.02310.0312
familyMicrococcaceae0.0520.02450.033
genusRothia0.0510.0260.035
genusOxalobacter-0.0510.02680.0358
speciesOxalobacter_formigenes-0.0510.02680.0358
speciesStreptococcus_vestibularis0.0510.02760.0368
speciesBacteroides_ovatus0.0510.02780.037
orderViruses_noname-0.0510.02840.0377
speciesParaprevotella_unclassified-0.050.03150.0416
speciesLactobacillus_gasseri0.050.03220.0425
familyViruses_noname0.0490.03520.0462
genusViruses_noname0.0490.03520.0462
speciesBacteroides_faecis0.0490.03530.0462
speciesTuricibacter_unclassified-0.0490.03560.0464
genusTuricibacter-0.0480.03650.0475
genusParaprevotella-0.0480.03830.0497
speciesRuminococcus_callidus0.0480.03860.0499
speciesParaprevotella_clara-0.0480.03990.0515
classDeltaproteobacteria0.0470.04130.0528
orderDesulfovibrionales0.0470.04130.0528
familyDesulfovibrionaceae0.0470.04130.0528
speciesClostridium_spiroforme-0.0460.04480.0572
speciesBacteroides_salanitronis-0.0460.04550.0579
speciesLactococcus_phage_phi7-0.0460.04610.0585
speciesLactobacillus_casei_paracasei-0.0460.04880.0618
speciesParabacteroides_unclassified-0.0460.04910.0619
speciesLactobacillus_delbrueckii-0.0450.04920.0619
orderAeromonadales0.0440.0550.0689
speciesBifidobacterium_angulatum-0.0440.0550.0689
speciesLactobacillus_ruminis-0.0440.05520.0689
speciesAcidaminococcus_fermentans0.0440.05750.0716
speciesBacteroides_coprophilus0.0430.06180.0768
speciesEubacterium_ventriosum-0.0430.06310.0781
genusParabacteroides-0.0430.06320.0781
speciesBacteroides_caccae0.0430.06420.0791
speciesMitsuokella_multacida-0.0430.06460.0794
familyPodoviridae0.0420.06720.0824
speciesParabacteroides_distasonis0.0420.07250.0887
speciesPorphyromonas_uenonis0.0410.07450.0909
speciesTuricibacter_sanguinis-0.0410.07480.091
speciesGemella_morbillorum0.0410.07680.0932
genusLactococcus0.040.08090.0979
familySuccinivibrionaceae-0.040.08110.0979
speciesCoriobacteriaceae_bacterium_phI-0.040.08380.101
speciesHoldemania_sp_AP20.0390.08940.107
genusLachnospiraceae_noname-0.0390.08990.108
genusButyricimonas0.0380.09610.114
speciesButyricimonas_synergistica0.0380.09610.114
genusSuccinatimonas-0.0380.09630.114
speciesSuccinatimonas_hippei-0.0380.09630.114
speciesBifidobacterium_breve0.0380.09790.116
genusCoriobacteriaceae_noname-0.0370.1080.127
genusSutterellaceae_unclassified0.0370.1090.128
speciesAcidaminococcus_intestini0.0370.110.129
speciesEubacterium_eligens0.0370.1140.134
speciesClostridium_sp_ATCC_BAA_4420.0350.1350.158
speciesDesulfovibrio_piger-0.0330.1580.184
speciesCollinsella_unclassified-0.0320.1620.188
familyStaphylococcaceae0.0320.1710.198
speciesEubacterium_dolichum-0.0310.1750.202
speciesPrevotella_bivia0.0310.1870.216
speciesBacteroides_cellulosilyticus-0.030.1880.216
genusLeuconostoc0.0290.2040.234
speciesLactobacillus_amylovorus0.0280.2210.253
speciesClostridium_sp_L2_50-0.0270.2360.27
speciesRoseburia_intestinalis-0.0270.2410.274
speciesBacteroides_dorei-0.0270.2410.274
speciesBacteroides_sp_4_3_47FAA0.0270.2440.277
speciesSutterella_parvirubra0.0270.2450.277
speciesEubacterium_sp_3_1_31-0.0270.2520.285
speciesLactococcus_lactis-0.0260.2590.292
speciesLactococcus_phage_bIL67-0.0260.260.292
orderActinomycetales0.0260.2670.299
speciesClostridium_asparagiforme0.0250.2820.315
speciesBacteroides_clarus0.0240.2960.33
speciesEggerthella_lenta-0.0240.3030.337
genusStaphylococcus0.0230.330.366
genusRoseburia0.0220.3410.378
familyActinomycetaceae0.0220.3430.379
familyClostridiales_Family_XI_Incertae_Sedis0.0220.3530.389
familyClostridiales_noname0.0210.3710.408
speciesBacteroides_fluxus0.0210.3730.409
speciesBacteroides_vulgatus0.020.3760.412
genusSlackia0.020.3820.417
speciesBacteroides_sp_2_1_22-0.0190.4030.439
genusPeptoniphilus0.0190.4220.459
speciesLactobacillus_rhamnosus-0.0180.4270.463
speciesPeptostreptococcus_anaerobius-0.0180.4490.486
genusActinomyces0.0170.4650.502
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0160.4840.522
speciesStreptococcus_parasanguinis0.0160.490.527
speciesBlautia_producta0.0150.5040.541
speciesBifidobacterium_bifidum0.0150.5130.549
speciesSlackia_piriformis-0.0130.5770.616
speciesRuminococcus_sp_JC304-0.0120.590.629
speciesParabacteroides_sp_20_3-0.0120.6040.642
speciesPeptostreptococcaceae_noname_unclassified0.010.6530.693
genusAcidaminococcus-0.010.6580.696
speciesErysipelotrichaceae_bacterium_3_1_53-0.010.660.697
speciesParabacteroides_merdae0.010.6660.702
speciesStreptococcus_mutans0.0090.6860.721
speciesCoprobacillus_sp_D6-0.0090.6990.733
speciesDialister_succinatiphilus0.0090.7060.739
genusBlautia-0.0080.7430.776
genusButyricicoccus-0.0070.7460.776
speciesButyricicoccus_pullicaecorum-0.0070.7460.776
familySutterellaceae-0.0070.7610.789
speciesEggerthella_sp_1_3_56FAA-0.0070.7660.792
genusPorphyromonas0.0070.7670.792
speciesStreptococcus_phage_Sfi21-0.0060.7850.809
speciesLachnospiraceae_bacterium_1_4_56FAA0.0060.7980.821
orderPseudomonadales-0.0050.8150.835
speciesLactobacillus_reuteri-0.0050.8160.835
speciesClostridium_clostridioforme0.0050.8380.855
classBetaproteobacteria0.0050.8390.855
speciesCoprobacillus_sp_29_1-0.0040.8560.871
speciesEubacterium_limosum0.0040.870.883
speciesParvimonas_unclassified0.0030.8970.908
genusParvimonas0.0030.8980.908
genusFaecalibacterium0.0020.9160.922
speciesFaecalibacterium_prausnitzii0.0020.9160.922
speciesAnaerotruncus_colihominis0.0020.9220.926
speciesPorphyromonas_asaccharolytica-0.0020.9370.939
orderBurkholderiales0.00.9910.991
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.009832643870370.0009576453400230.00161057440961798926.8366
Rheumatoid arthritisChina127980.005543044294380.004447096441630.043659562617428669.55748
ObesityDenmark1691230.0002575987199240.0007952918001280.0708371146349605819.9204
Crohns diseaseSpain17660.007842510813186.96751666766e-050.08200527707641310043.5578
Type II diabetesSweden53920.0008342841924480.0002022711499670.130888984317468315.8584
Colorectal cancerAustria64350.0005538212914020.004637793198730.2905029863361175039.755
Type II diabetesDenmark752779.6677328761e-050.000212582712280.334500779931667654.6629
Ulcerative colitisSpain78661.58465985978e-056.96751666766e-050.392026727921650754.4534
Type II diabetesChina1831850.003399554896230.003252160737730.7178112785342523983.4099
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382