MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-18 00:10:20 PST
Job id & description: 2128, ect ECIAI39_0025 rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
Query type: dna
Count queries & homologs: 1, 3
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
ect7209413CompleteunknownNOG309449ProteobacteriaEscherichia93.9674.77100.0
ect7841020CompleteK02968COG0268ProteobacteriaEnterobacter99.6297.7894.7
ect7910840CompleteK02968COG0268Proteobacteriaunknown86.0486.3687.34
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.8990.00.0
orderEnterobacteriales0.9460.00.0
familyEnterobacteriaceae0.9460.00.0
genusEscherichia0.8740.00.0
speciesEscherichia_coli0.8520.00.0
phylumProteobacteria0.7161.15e-2939.05e-292
genusKlebsiella0.6032.08e-1851.4e-183
speciesKlebsiella_pneumoniae0.5761.26e-1657.43e-164
speciesEscherichia_unclassified0.5451.97e-1451.03e-143
genusPantoea0.4661.86e-1017.98e-100
speciesPantoea_unclassified0.4661.86e-1017.98e-100
genusEnterobacter0.4422.77e-901.09e-88
speciesEnterobacter_cloacae0.4374.1e-881.49e-86
genusCitrobacter0.3511.73e-555.83e-54
speciesRuminococcus_gnavus0.346.71e-522.11e-50
speciesCitrobacter_unclassified0.3391.62e-514.78e-50
speciesCitrobacter_freundii0.3321.78e-494.94e-48
familyFusobacteriaceae0.3322.01e-495.27e-48
genusFusobacterium0.3279.09e-482.26e-46
phylumFusobacteria0.3252.85e-476.11e-46
classFusobacteriia0.3252.85e-476.11e-46
orderFusobacteriales0.3252.85e-476.11e-46
speciesClostridium_nexile0.3066.2e-421.27e-40
speciesSubdoligranulum_unclassified-0.2996.97e-401.37e-38
speciesKlebsiella_oxytoca0.2932.29e-384.32e-37
genusSubdoligranulum-0.2932.95e-385.36e-37
genusCoprobacillus0.2861.81e-363.16e-35
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2831.12e-351.89e-34
speciesEubacterium_siraeum-0.2724.13e-336.72e-32
speciesClostridium_bolteae0.2678.48e-321.33e-30
speciesCoprobacillus_unclassified0.2643.2e-314.87e-30
speciesAnaerotruncus_unclassified-0.2561.81e-292.67e-28
speciesKlebsiella_unclassified0.2562.44e-293.49e-28
speciesClostridium_ramosum0.2562.76e-293.83e-28
speciesClostridium_hathewayi0.256.21e-288.37e-27
genusEnterococcus0.2481.61e-272.11e-26
genusButyrivibrio-0.2471.84e-272.35e-26
familyEnterococcaceae0.2463.06e-273.8e-26
genusWeissella0.2455.84e-277.07e-26
genusCoprococcus-0.2349.07e-251.07e-23
speciesEubacterium_ramulus-0.2349.51e-251.09e-23
speciesFusobacterium_ulcerans0.2322.88e-243.24e-23
speciesWeissella_confusa0.2291e-231.1e-22
familyRuminococcaceae-0.2255.81e-236.23e-22
speciesClostridium_perfringens0.2231.92e-222.01e-21
speciesVeillonella_parvula0.2213.46e-223.55e-21
genusPseudoflavonifractor-0.227.11e-226.99e-21
speciesPseudoflavonifractor_capillosus-0.227.11e-226.99e-21
speciesEubacterium_rectale-0.2172.09e-212.01e-20
genusBarnesiella-0.2172.31e-212.14e-20
speciesBarnesiella_intestinihominis-0.2172.31e-212.14e-20
speciesClostridium_symbiosum0.2163.32e-213.01e-20
familyClostridiaceae0.2154.65e-214.14e-20
speciesSutterella_wadsworthensis-0.2131.18e-201.03e-19
genusClostridium0.2131.2e-201.03e-19
classClostridia-0.2112.66e-202.2e-19
orderClostridiales-0.2112.66e-202.2e-19
speciesLactobacillus_salivarius0.2112.95e-202.4e-19
genusMegasphaera0.213.9e-203.12e-19
speciesEggerthella_unclassified0.215.38e-204.23e-19
speciesBifidobacterium_adolescentis-0.2088.59e-206.65e-19
genusVeillonella0.2089.45e-207.19e-19
speciesLactococcus_garvieae0.2071.26e-199.44e-19
speciesStreptococcus_anginosus0.2071.58e-191.17e-18
speciesMegasphaera_micronuciformis0.2071.69e-191.23e-18
speciesFusobacterium_nucleatum0.2062.08e-191.49e-18
speciesClostridium_leptum-0.2044.4e-193.1e-18
speciesCoprococcus_comes-0.2038.72e-196.05e-18
genusSutterella-0.2038.99e-196.15e-18
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2029.99e-196.74e-18
speciesBacteroides_fragilis0.2021.06e-187.05e-18
genusEubacterium-0.2021.38e-189.05e-18
familyEubacteriaceae-0.2011.43e-189.25e-18
genusEggerthella0.2012.01e-181.28e-17
speciesBacteroides_uniformis-0.22.28e-181.43e-17
orderLactobacillales0.22.81e-181.75e-17
familyLeuconostocaceae0.23e-181.84e-17
classBacilli0.1985.24e-183.17e-17
speciesEnterococcus_faecalis0.1978.83e-185.28e-17
speciesFusobacterium_varium0.1961.05e-176.2e-17
familyOscillospiraceae-0.1916.76e-173.89e-16
genusOscillibacter-0.1916.76e-173.89e-16
familyBacteroidales_noname-0.1918.24e-174.58e-16
genusBacteroidales_noname-0.1918.24e-174.58e-16
speciesBacteroidales_bacterium_ph8-0.1918.24e-174.58e-16
genusCoprobacter-0.191.04e-165.64e-16
speciesCoprobacter_fastidiosus-0.191.04e-165.64e-16
speciesClostridiales_bacterium_1_7_47FAA0.1891.5e-168.05e-16
speciesWeissella_cibaria0.1891.58e-168.38e-16
familyRikenellaceae-0.1891.75e-169.08e-16
genusAlistipes-0.1891.75e-169.08e-16
speciesEnterobacter_aerogenes0.1882.61e-161.34e-15
speciesDorea_longicatena-0.1873.35e-161.7e-15
speciesOscillibacter_unclassified-0.1873.82e-161.92e-15
speciesMitsuokella_unclassified-0.1864.44e-162.21e-15
speciesFusobacterium_mortiferum0.1864.78e-162.35e-15
speciesButyrivibrio_unclassified-0.1831.4e-156.81e-15
speciesStreptococcus_infantarius0.1831.43e-156.89e-15
speciesMegamonas_unclassified0.184.28e-152.04e-14
genusMegamonas0.1795.28e-152.49e-14
genusMitsuokella-0.1781.02e-144.77e-14
speciesRoseburia_hominis-0.1771.49e-146.89e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1761.71e-147.84e-14
speciesClostridium_citroniae0.1762.02e-149.17e-14
speciesAlistipes_shahii-0.1752.31e-141.04e-13
speciesLactobacillus_mucosae0.1752.47e-141.1e-13
genusDorea-0.1742.99e-141.32e-13
speciesCoprococcus_catus-0.1726.34e-142.77e-13
speciesVeillonella_unclassified0.1726.44e-142.79e-13
genusAnaerotruncus-0.1719.07e-143.89e-13
genusRuminococcaceae_noname-0.171.45e-136.11e-13
speciesRuminococcaceae_bacterium_D16-0.171.45e-136.11e-13
familyBacillales_noname0.1692.11e-138.74e-13
genusGemella0.1692.11e-138.74e-13
speciesEubacterium_hallii-0.1682.34e-139.6e-13
speciesBifidobacterium_dentium0.1664.46e-131.81e-12
speciesEnterococcus_faecium0.1657.94e-133.2e-12
speciesVeillonella_dispar0.1649.59e-133.84e-12
phylumVerrucomicrobia-0.1641.03e-123.92e-12
classVerrucomicrobiae-0.1641.03e-123.92e-12
orderVerrucomicrobiales-0.1641.03e-123.92e-12
familyVerrucomicrobiaceae-0.1641.03e-123.92e-12
genusAkkermansia-0.1641.03e-123.92e-12
speciesAkkermansia_muciniphila-0.1641.03e-123.92e-12
speciesAlistipes_senegalensis-0.1641.05e-123.96e-12
genusOdoribacter-0.1641.07e-124.01e-12
speciesAlistipes_putredinis-0.1631.26e-124.68e-12
phylumSynergistetes0.1631.51e-125.44e-12
classSynergistia0.1631.51e-125.44e-12
orderSynergistales0.1631.51e-125.44e-12
familySynergistaceae0.1631.51e-125.44e-12
speciesAnaerostipes_hadrus-0.1621.57e-125.61e-12
genusFlavonifractor0.1621.68e-125.92e-12
speciesFlavonifractor_plautii0.1621.68e-125.92e-12
phylumFirmicutes-0.163.44e-121.2e-11
genusPyramidobacter0.1594.43e-121.53e-11
speciesPyramidobacter_piscolens0.1594.43e-121.53e-11
speciesC2likevirus_unclassified-0.1587.11e-122.43e-11
familyLactobacillaceae0.1577.67e-122.6e-11
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1579.38e-123.16e-11
genusLactobacillus0.1551.56e-115.22e-11
speciesStreptococcus_mitis_oralis_pneumoniae0.1551.8e-115.98e-11
genusC2likevirus-0.1541.99e-116.57e-11
speciesAnaerostipes_unclassified0.1533.27e-111.07e-10
speciesCollinsella_aerofaciens-0.1514.65e-111.51e-10
speciesStreptococcus_salivarius0.156.16e-111.99e-10
speciesOdoribacter_splanchnicus-0.156.52e-112.09e-10
speciesBifidobacterium_pseudocatenulatum0.157.34e-112.34e-10
speciesStreptococcus_thermophilus-0.1491.03e-103.26e-10
genusSolobacterium0.1491.09e-103.41e-10
speciesSolobacterium_moorei0.1491.09e-103.41e-10
speciesKlebsiella_sp_MS_92_30.1471.62e-105.03e-10
speciesButyrivibrio_crossotus-0.1462.14e-106.6e-10
genusMorganella0.1452.78e-108.47e-10
speciesMorganella_morganii0.1452.78e-108.47e-10
familyStreptococcaceae0.1452.89e-108.74e-10
speciesPrevotella_buccae0.1453.15e-109.47e-10
speciesCoprococcus_sp_ART55_1-0.1444.44e-101.33e-09
genusCollinsella-0.1434.6e-101.37e-09
speciesLactobacillus_fermentum0.1435.97e-101.76e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1426.7e-101.96e-09
speciesDorea_formicigenerans-0.141.21e-093.53e-09
orderBacillales0.141.31e-093.79e-09
classEpsilonproteobacteria0.1391.43e-094.09e-09
orderCampylobacterales0.1391.43e-094.09e-09
genusFaecalibacterium-0.1391.45e-094.1e-09
speciesFaecalibacterium_prausnitzii-0.1391.45e-094.1e-09
speciesBacteroides_stercoris0.1391.67e-094.69e-09
genusCampylobacter0.1391.77e-094.94e-09
familySutterellaceae-0.1391.78e-094.94e-09
familyCampylobacteraceae0.1381.86e-095.13e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1382.15e-095.9e-09
speciesBacteroides_plebeius0.1372.86e-097.8e-09
genusStreptococcus0.1372.91e-097.89e-09
familyPorphyromonadaceae-0.1373e-098.09e-09
speciesVeillonella_atypica0.1363.75e-091.01e-08
genusPrevotella0.1363.85e-091.03e-08
speciesHaemophilus_parainfluenzae0.1364.03e-091.07e-08
genusClostridiales_noname0.1354.16e-091.1e-08
genusBlautia0.1355.07e-091.33e-08
genusHaemophilus0.1355.12e-091.34e-08
orderPasteurellales0.1346.82e-091.76e-08
familyPasteurellaceae0.1346.82e-091.76e-08
speciesRuminococcus_lactaris-0.1329.41e-092.41e-08
speciesStreptococcus_lutetiensis0.1329.84e-092.51e-08
speciesRuminococcus_sp_5_1_39BFAA-0.1311.46e-083.7e-08
genusProteus0.131.55e-083.91e-08
genusPeptostreptococcus0.131.72e-084.32e-08
orderBurkholderiales-0.131.78e-084.45e-08
familyPeptostreptococcaceae0.1292.01e-084.99e-08
speciesPrevotella_stercorea0.1282.87e-087.09e-08
familyMyoviridae0.1282.98e-087.33e-08
classBetaproteobacteria-0.1265.15e-081.26e-07
speciesAlistipes_onderdonkii-0.1255.19e-081.26e-07
speciesMethanobrevibacter_smithii-0.1255.41e-081.31e-07
speciesClostridium_clostridioforme0.1246.64e-081.6e-07
speciesStreptococcus_gordonii0.1246.93e-081.66e-07
speciesParaprevotella_xylaniphila-0.1239.1e-082.17e-07
speciesLactobacillus_sanfranciscensis0.1221.12e-072.66e-07
genusMethanobrevibacter-0.1221.17e-072.76e-07
speciesProteus_mirabilis0.1221.34e-073.15e-07
speciesMegasphaera_unclassified0.122.06e-074.81e-07
classMethanobacteria-0.1192.72e-076.26e-07
orderMethanobacteriales-0.1192.72e-076.26e-07
familyMethanobacteriaceae-0.1192.72e-076.26e-07
phylumEuryarchaeota-0.1182.85e-076.53e-07
genusAggregatibacter0.1182.95e-076.73e-07
speciesPrevotella_copri0.1183.18e-077.22e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.1173.64e-078.22e-07
speciesStreptococcus_australis0.1164.39e-079.87e-07
speciesOdoribacter_unclassified-0.1164.73e-071.06e-06
speciesMegamonas_hypermegale0.1156.28e-071.4e-06
genusPeptostreptococcaceae_noname0.1156.6e-071.46e-06
speciesEubacterium_ventriosum-0.1156.8e-071.5e-06
speciesLeuconostoc_lactis0.1139.75e-072.14e-06
speciesBlautia_hydrogenotrophica-0.1121.12e-062.45e-06
speciesMegamonas_rupellensis0.1121.24e-062.7e-06
speciesPeptostreptococcus_stomatis0.1111.44e-063.12e-06
speciesBacteroides_intestinalis0.1111.48e-063.19e-06
speciesRothia_mucilaginosa0.1111.59e-063.41e-06
genusRuminococcus-0.1111.63e-063.48e-06
speciesClostridium_bartlettii0.111.76e-063.74e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1092.07e-064.38e-06
speciesStreptococcus_vestibularis0.1082.65e-065.58e-06
speciesParaprevotella_unclassified-0.1083e-066.29e-06
speciesRuminococcus_champanellensis-0.1083.14e-066.56e-06
speciesStreptococcus_pasteurianus0.1073.47e-067.22e-06
genusParaprevotella-0.1073.68e-067.62e-06
speciesAggregatibacter_segnis0.1054.89e-061.01e-05
speciesEnterobacteria_phage_HK5440.1054.92e-061.01e-05
speciesCoprococcus_eutactus-0.1055.23e-061.07e-05
familySiphoviridae-0.1055.37e-061.09e-05
speciesGemella_morbillorum0.1046.03e-061.22e-05
familyPropionibacteriaceae-0.1046.04e-061.22e-05
speciesAlistipes_indistinctus-0.1047.07e-061.42e-05
familyActinomycetaceae0.1047.09e-061.42e-05
speciesParabacteroides_merdae-0.1038.02e-061.6e-05
speciesCampylobacter_concisus0.1038.61e-061.71e-05
speciesAlistipes_finegoldii-0.1021.03e-052.03e-05
speciesParaprevotella_clara-0.1011.13e-052.22e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.11.56e-053.06e-05
genusAdlercreutzia-0.0991.79e-053.48e-05
speciesAdlercreutzia_equolifaciens-0.0991.79e-053.48e-05
speciesBacteroides_thetaiotaomicron0.0981.99e-053.85e-05
genusActinomyces0.0982e-053.85e-05
familyMicrococcaceae0.0982.08e-053.99e-05
genusRothia0.0982.23e-054.26e-05
familyClostridiales_noname0.0982.39e-054.55e-05
familyLachnospiraceae-0.0963.11e-055.9e-05
speciesOlsenella_unclassified-0.0953.79e-057.16e-05
speciesRuminococcus_obeum-0.0954.1e-057.71e-05
speciesLactobacillus_vaginalis0.0935.34e-050.0001
speciesHaemophilus_paraphrohaemolyticus0.0935.42e-050.000101
speciesLactobacillus_crispatus0.0926.64e-050.000123
speciesLactobacillus_plantarum0.0927.28e-050.000135
speciesLactobacillus_gasseri0.0917.83e-050.000144
speciesRoseburia_intestinalis-0.0918.06e-050.000148
speciesOscillibacter_sp_KLE_1745-0.0918.59e-050.000157
speciesMegamonas_funiformis0.099.13e-050.000166
speciesLachnospiraceae_bacterium_5_1_57FAA0.099.46e-050.000172
genusAcidaminococcaceae_unclassified-0.099.5e-050.000172
speciesAcidaminococcus_intestini0.0890.000120.000216
genusLambdalikevirus0.0880.0001420.000255
speciesBacteroides_nordii0.0880.0001430.000256
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0870.0001550.000276
speciesBlautia_producta0.0870.0001580.00028
orderCoriobacteriales-0.0870.000170.000298
familyCoriobacteriaceae-0.0870.000170.000298
speciesLactobacillus_amylovorus0.0870.000170.000298
speciesEggerthella_lenta0.0870.0001710.000299
genusRoseburia-0.0860.0002010.000349
speciesClostridium_sp_L2_50-0.0860.0002010.000349
speciesBacteroides_sp_3_1_190.0860.0002130.000368
orderActinomycetales0.0850.0002220.000382
genusActinobacillus0.0850.0002460.000421
speciesActinobacillus_unclassified0.0850.0002460.000421
speciesEubacterium_eligens-0.0840.0002590.000441
familyVeillonellaceae0.0840.0002630.000447
speciesErysipelotrichaceae_bacterium_21_3-0.0840.0002730.000462
speciesBacteroides_coprocola0.0840.0002860.000482
speciesRoseburia_unclassified-0.0830.0003510.00059
genusAnaerostipes-0.0820.0003770.000631
speciesLactococcus_phage_P680-0.0810.0004540.000757
speciesBacteroides_dorei-0.080.0005080.000844
speciesAlistipes_sp_HGB5-0.080.0005420.000898
speciesBifidobacterium_catenulatum-0.0790.0006560.00108
speciesCoprobacillus_sp_29_10.0780.0006820.00112
speciesEubacterium_limosum0.0780.0007320.0012
speciesMegasphaera_elsdenii0.0780.0007850.00128
speciesLactobacillus_acidophilus-0.0770.0007990.0013
speciesCoprobacillus_sp_D60.0770.000830.00135
genusParvimonas0.0770.0008880.00144
speciesParvimonas_unclassified0.0770.0008980.00144
speciesStreptococcus_sanguinis0.0770.0008980.00144
speciesLactobacillus_oris0.0770.000910.00146
speciesStreptococcus_mutans0.0770.0009180.00146
genusPhascolarctobacterium-0.0760.0009580.00152
speciesPhascolarctobacterium_succinatutens-0.0760.0009580.00152
genusCatenibacterium-0.0760.001060.00167
speciesCatenibacterium_mitsuokai-0.0760.001060.00167
speciesPorphyromonas_uenonis0.0750.00110.00172
genusOlsenella-0.0750.001160.00181
genusParabacteroides-0.0740.001280.00199
speciesBacteroides_salyersiae0.0740.001320.00205
speciesBacteroides_pectinophilus-0.0740.001380.00214
speciesPropionibacterium_freudenreichii-0.0740.001450.00224
familyAcidaminococcaceae-0.0730.001540.00237
speciesDialister_invisus-0.0730.001570.00241
familyOxalobacteraceae-0.0730.001620.00247
speciesMethanobrevibacter_unclassified-0.0720.001760.00268
genusOxalobacter-0.0720.001770.00268
speciesOxalobacter_formigenes-0.0720.001770.00268
genusDialister-0.0720.001840.00277
genusMyoviridae_noname0.0710.001990.00299
speciesOscillibacter_sp_KLE_1728-0.0710.002260.00339
speciesHaemophilus_sputorum0.070.002290.00342
genusPeptoniphilus0.070.002380.00354
genusTunalikevirus0.070.002470.00367
genusSiphoviridae_noname-0.070.002480.00367
speciesAlistipes_sp_AP11-0.070.002610.00385
speciesClostridium_asparagiforme0.070.002620.00385
genusLeuconostoc0.0690.002710.00397
speciesLactococcus_phage_936_sensu_lato-0.0690.002830.00414
speciesParabacteroides_goldsteinii0.0690.002910.00424
speciesParabacteroides_sp_D13-0.0690.003030.0044
speciesEubacterium_biforme-0.0680.003120.00452
speciesBacteroides_oleiciplenus0.0680.003350.00484
genusPorphyromonas0.0670.003680.0053
speciesCollinsella_tanakaei0.0670.003830.00549
speciesAlistipes_unclassified-0.0660.004140.00592
speciesBacteroides_sp_1_1_6-0.0660.004420.0063
speciesClostridium_sp_ATCC_BAA_4420.0660.004430.0063
speciesBilophila_wadsworthia0.0650.004810.00682
classErysipelotrichia0.0650.004950.00695
orderErysipelotrichales0.0650.004950.00695
familyErysipelotrichaceae0.0650.004950.00695
speciesBifidobacterium_breve0.0640.005280.0074
speciesBacteroides_finegoldii0.0630.006190.00864
speciesBifidobacterium_animalis-0.0630.006410.00892
genusBilophila0.0630.006550.00909
speciesKlebsiella_phage_KP360.0630.006660.00922
speciesBilophila_unclassified0.0620.007130.00984
speciesAcidaminococcus_fermentans0.0610.008810.0121
speciesBacteroides_xylanisolvens0.060.009430.0129
speciesAcidaminococcus_unclassified-0.060.009440.0129
genusBifidobacterium-0.060.009990.0136
genusPropionibacterium-0.0590.01130.0154
speciesBacteroides_cellulosilyticus-0.0580.01160.0157
orderAeromonadales0.0580.01170.0158
genusSutterellaceae_unclassified-0.0580.01230.0166
speciesBacteroides_barnesiae-0.0580.01250.0168
speciesHoldemania_unclassified-0.0570.01350.0181
speciesLachnospiraceae_bacterium_1_1_57FAA0.0560.01460.0195
orderBifidobacteriales-0.0560.01510.0201
familyBifidobacteriaceae-0.0560.01510.0201
speciesBifidobacterium_angulatum-0.0550.01820.0241
speciesAnaerotruncus_colihominis0.0540.01870.0247
speciesRuminococcus_bromii-0.0540.02060.0272
speciesPrevotella_bivia0.0520.02390.0314
classDeltaproteobacteria0.0520.02430.0317
orderDesulfovibrionales0.0520.02430.0317
familyDesulfovibrionaceae0.0520.02430.0317
speciesDesulfovibrio_piger-0.0510.02630.0342
orderCaudovirales-0.0510.02660.0345
speciesPorphyromonas_asaccharolytica0.0510.02680.0347
speciesRoseburia_inulinivorans-0.0510.02760.0356
speciesHoldemania_filiformis-0.050.0290.0373
speciesDesulfovibrio_desulfuricans-0.050.02920.0375
phylumActinobacteria-0.0490.03330.0425
classActinobacteria-0.0490.03330.0425
speciesBifidobacterium_longum-0.0490.03550.0452
speciesBacteroides_sp_2_1_22-0.0480.03780.048
speciesErysipelotrichaceae_bacterium_2_2_44A0.0470.04130.0523
speciesHoldemania_sp_AP20.0460.0490.0618
speciesSutterella_parvirubra0.0450.05180.0652
speciesLactococcus_phage_jm2-0.0440.05720.0718
speciesBacteroides_salanitronis-0.0420.06960.0869
speciesBacteroides_coprophilus0.0420.06960.0869
speciesLactococcus_phage_phi7-0.0410.07280.0907
speciesStreptococcus_parasanguinis0.0410.07410.092
orderPseudomonadales0.0410.07630.0945
speciesEubacterium_cylindroides-0.0410.07710.0953
phylumBacteroidetes-0.0410.07910.0972
classBacteroidia-0.0410.07930.0972
orderBacteroidales-0.0410.07930.0972
speciesParabacteroides_unclassified0.0380.09740.119
speciesLactobacillus_reuteri0.0380.09770.119
genusDesulfovibrio-0.0380.10.122
genusErysipelotrichaceae_noname0.0360.1190.144
familyBacteroidaceae0.0360.1230.148
genusBacteroides0.0360.1230.148
phylumViruses_noname-0.0340.1430.172
classViruses_noname-0.0340.1430.172
speciesBacteroides_eggerthii0.0330.1480.177
classNegativicutes0.0330.150.179
orderSelenomonadales0.0330.150.179
speciesLactobacillus_ruminis-0.0330.1540.183
speciesPeptostreptococcaceae_noname_unclassified-0.0310.180.213
speciesErysipelotrichaceae_bacterium_6_1_450.0310.1850.219
speciesBacteroides_massiliensis0.030.1880.222
speciesSubdoligranulum_sp_4_3_54A2FAA0.030.1980.233
speciesBacteroides_vulgatus-0.030.1990.234
genusLactococcus0.0290.2020.237
speciesEubacterium_dolichum0.0290.2080.243
speciesLactococcus_lactis-0.0280.2260.263
speciesDorea_unclassified-0.0280.2270.264
speciesClostridium_sp_KLE_1755-0.0280.230.267
genusAcidaminococcus0.0270.250.289
speciesClostridium_spiroforme-0.0270.250.289
speciesCoriobacteriaceae_bacterium_phI-0.0270.2510.289
genusHoldemania-0.0260.2530.291
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0250.2780.318
speciesRuminococcus_sp_JC3040.0240.2970.339
genusButyricicoccus0.0240.3070.349
speciesButyricicoccus_pullicaecorum0.0240.3070.349
speciesMitsuokella_multacida-0.0240.3080.349
genusCoriobacteriaceae_noname-0.0230.3220.364
speciesLactobacillus_rhamnosus0.0220.3330.376
speciesLactococcus_phage_bIL67-0.0220.3420.385
genusSlackia0.0220.3510.394
speciesPeptostreptococcus_anaerobius0.0220.3520.395
speciesErysipelotrichaceae_bacterium_3_1_530.0210.3550.397
speciesCollinsella_unclassified-0.0210.3740.417
familyPrevotellaceae0.020.3780.421
familyPodoviridae0.020.3920.435
speciesLactobacillus_casei_paracasei-0.020.3930.435
genusParasutterella0.0190.4160.459
speciesParasutterella_excrementihominis0.0190.4160.459
genusStaphylococcus-0.0190.4170.459
familyViruses_noname0.0190.420.46
genusViruses_noname0.0190.420.46
genusClostridiaceae_noname0.0190.4240.462
speciesClostridiaceae_bacterium_JC1180.0190.4240.462
speciesParabacteroides_johnsonii0.0180.4340.472
speciesBacteroides_clarus0.0170.4550.493
speciesBacteroides_ovatus-0.0170.4550.493
genusBurkholderiales_noname0.0170.4640.5
speciesBurkholderiales_bacterium_1_1_470.0170.4640.5
speciesParabacteroides_sp_20_3-0.0170.470.505
genusGordonibacter-0.0170.4740.507
speciesGordonibacter_pamelaeae-0.0170.4740.507
speciesCollinsella_intestinalis0.0160.4990.533
familyBurkholderiales_noname0.0150.5190.553
speciesTuricibacter_unclassified-0.0140.5470.581
genusMethanosphaera-0.0130.5730.606
speciesMethanosphaera_stadtmanae-0.0130.5730.606
speciesSlackia_piriformis-0.0130.5790.611
speciesBifidobacterium_bifidum0.0110.6240.657
speciesTuricibacter_sanguinis0.0110.6260.658
familyStaphylococcaceae-0.0110.6490.681
genusTuricibacter-0.010.670.701
speciesOdoribacter_laneus-0.0080.720.752
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0080.7370.768
speciesLactobacillus_delbrueckii0.0080.7440.773
speciesRuminococcus_torques0.0060.8010.831
speciesEubacterium_sp_3_1_31-0.0050.8220.851
speciesDialister_succinatiphilus-0.0050.840.868
genusButyricimonas-0.0040.8530.877
speciesButyricimonas_synergistica-0.0040.8530.877
speciesBacteroides_faecis-0.0040.8790.902
orderViruses_noname-0.0030.8830.902
speciesBacteroides_fluxus0.0030.8830.902
genusSuccinatimonas0.0030.8890.904
speciesSuccinatimonas_hippei0.0030.8890.904
speciesBacteroides_caccae0.0030.8990.913
speciesEggerthella_sp_1_3_56FAA-0.0020.9260.938
speciesBacteroides_sp_4_3_47FAA0.0020.930.94
speciesParabacteroides_distasonis-0.0020.9470.955
familySuccinivibrionaceae-0.0010.950.956
speciesStreptococcus_phage_Sfi210.00.9850.989
genusLachnospiraceae_noname0.00.9920.994
speciesRuminococcus_callidus0.00.9990.999
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.007750902452180.003027831071434.98520433735e-124911.60947
Liver cirrhosisChina1201140.03219638472150.006334436383837.89514664087e-05494816.6213
Crohns diseaseSpain17660.03618252857660.004110355619060.000583587248721351011.6708
Colorectal cancerAustria64350.04932645622830.01247509669960.040625024238324058.1371
Type II diabetesChina1831850.02671456943820.01832819395840.0984158039181940531.0817
Ulcerative colitisSpain78660.001881092088340.004110355619060.2764100316071306443.0956
ObesityDenmark1691230.004343992826640.008923936589250.4827624876411890462.1617
Type II diabetesSweden53920.008084799373390.007957499775110.7007540720582143372.5804
Rheumatoid arthritisChina127980.01681222566750.01428575830650.709273959222252975.1292
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382