MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-23 17:57:23 PST
Job id & description: 2133, Tax_Class
Query type: dna
Count queries & homologs: 14, 109
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
1|AE001437.168613.170132511592unknownunknownFirmicutesClostridium98.7474.9290.89
14|CP000527.3172152.3173693882598unknownunknownProteobacteriaDesulfovibrio99.9284.291.79
14|CP000527.3172152.3173693882548unknownunknownProteobacteriaBilophila99.083.5691.79
13|CP019066.1428494.14300211081828unknownunknownActinobacteriaActinomyces97.0599.5887.59
0|CP000282.3213358.3214883877836unknownunknownProteobacteriaProteus97.6792.1586.8
0|CP000282.3213358.3214883856178unknownunknownProteobacteriaEnterobacter87.9282.3888.89
0|CP000282.3213358.32148831093628unknownunknownProteobacteriaProvidencia89.4391.9587.84
0|CP000282.3213358.3214883843984unknownunknownProteobacteriaEscherichia97.4691.2585.64
2|CP001964.1209818.1211325886983unknownunknownActinobacteriaBifidobacterium97.0684.5187.25
2|CP001964.1209818.1211325882600unknownunknownActinobacteriaBifidobacterium97.0684.1286.89
0|CP000282.3213358.3214883860634unknownunknownProteobacteriaHaemophilus88.9583.2686.58
1|AE001437.168613.170132957732unknownunknownFirmicutesClostridium98.1994.1684.77
2|CP001964.1209818.1211325864726unknownunknownActinobacteriaBifidobacterium95.4882.7186.56
0|CP000282.3213358.3214883896267unknownunknownProteobacteriaAggregatibacter88.9584.6286.16
13|CP019066.1428494.1430021943064unknownunknownActinobacteriaAtopobium99.6594.0784.04
1|AE001437.168613.170132928676unknownunknownFirmicutesAnaerofustis98.1294.1683.99
1|AE001437.168613.170132952897unknownunknownFirmicutesRuminococcus97.2893.3184.01
0|CP000282.3213358.3214883933546unknownunknownProteobacteriaSuccinatimonas97.4692.3683.9
16|CP017141.1132021.1133550919121unknownunknownBacteroidetesAlistipes100.090.9683.93
1|AE001437.168613.170132909967unknownunknownFirmicutesunknown97.6393.7583.65
1|AE001437.168613.170132914680unknownunknownFirmicutesClostridium91.5686.1584.77
1|AE001437.168613.170132909790unknownunknownFirmicutesunknown83.1178.386.33
1|AE001437.168613.170132948040unknownunknownFirmicutesEubacterium97.1493.1983.32
1|AE001437.168613.170132909879unknownunknownFirmicutesunknown83.1178.4485.93
1|AE001437.168613.170132909972unknownunknownFirmicutesunknown91.9186.5784.19
1|AE001437.168613.170132905338unknownunknownFirmicutesAnaerostipes92.0486.6184.02
1|AE001437.168613.170132923885unknownunknownFirmicutesButyrivibrio98.1294.1882.99
1|AE001437.168613.170132909876unknownunknownFirmicutesRuminococcus92.2586.7983.93
1|AE001437.168613.170132887138unknownunknownFirmicutesRoseburia92.0485.8683.97
1|AE001437.168613.170132909968unknownunknownFirmicutesunknown92.5387.1783.75
1|AE001437.168613.170132643255unknownunknownFirmicutesunknown92.2575.6483.78
1|AE001437.168613.170132962644unknownunknownFirmicutesunknown98.1296.0382.76
1|AE001437.168613.1701321076271unknownunknownFirmicutesEubacterium83.1183.7185.51
0|CP000282.3213358.3214883905339unknownunknownProteobacteriaSutterella88.484.3784.15
16|CP017141.1132021.1133550914677unknownunknownBacteroidetesBacteroides92.4683.9884.2
1|AE001437.168613.170132909973unknownunknownFirmicutesClostridium92.0486.783.51
1|AE001437.168613.170132909969unknownunknownFirmicutesDorea92.2586.983.51
1|AE001437.168613.170132882599unknownunknownFirmicutesGranulicatella98.1294.2882.48
1|AE001437.168613.170132905337unknownunknownFirmicutesClostridium83.1878.2785.18
16|CP017141.1132021.1133550919154unknownunknownBacteroidetesBacteroides92.4684.0983.97
16|CP017141.1132021.1133550882601unknownunknownBacteroidetesBacteroides92.4683.0283.88
1|AE001437.168613.170132905340unknownunknownFirmicutesBlautia92.0486.683.37
13|CP019066.1428494.1430021948025unknownunknownActinobacteriaEggerthella99.6593.9982.36
1|AE001437.168613.170132909964unknownunknownFirmicutesEubacterium92.0486.7183.3
1|AE001437.168613.170132909970unknownunknownFirmicutesClostridium97.6393.7582.35
16|CP017141.1132021.1133550919127unknownunknownBacteroidetesBacteroides92.4684.0983.71
1|AE001437.168613.170132824698unknownunknownFirmicutesLactobacillus92.5385.7783.15
1|AE001437.168613.170132919228unknownunknownFirmicutesAnaerotruncus91.786.3883.38
1|AE001437.168613.170132909821unknownunknownFirmicutesEubacterium92.5387.0583.08
16|CP017141.1132021.1133550923884unknownunknownBacteroidetesBacteroides92.4684.3283.59
16|CP017141.1132021.1133550919229unknownunknownBacteroidetesBacteroides92.5484.3483.48
1|AE001437.168613.170132860628unknownunknownFirmicutesLactobacillus92.5387.1982.8
16|CP017141.1132021.1133550919231unknownunknownBacteroidetesBacteroides92.4684.283.26
1|AE001437.168613.170132943183unknownunknownFirmicutesFaecalibacterium96.392.3982.19
1|AE001437.168613.170132864729unknownunknownFirmicutesEnterococcus92.687.682.65
1|AE001437.168613.1701321047730unknownunknownFirmicutesOribacterium91.5690.9782.73
16|CP017141.1132021.1133550909971unknownunknownBacteroidetesBacteroides92.4684.0783.11
1|AE001437.168613.170132821203unknownunknownFirmicutesWeissella92.685.6182.42
16|CP017141.1132021.1133550914679unknownunknownBacteroidetesBacteroides93.7785.2282.58
1|AE001437.168613.170132864662unknownunknownFirmicutesLactobacillus83.6778.9283.4
16|CP017141.1132021.1133550909965unknownunknownBacteroidetesBacteroides92.4683.9582.43
13|CP019066.1428494.1430021948165unknownunknownActinobacteriaCollinsella96.8491.4481.31
0|CP000282.3213358.3214883896243unknownunknownProteobacteriaunknown87.1782.5582.31
1|AE001437.168613.170132868909unknownunknownFirmicutesGemella97.1493.3480.88
0|CP000282.3213358.3214883836310unknownunknownFirmicutesLactobacillus88.9582.5681.87
0|CP000282.3213358.3214883832524unknownunknownFirmicutesLactobacillus89.9883.1781.73
16|CP017141.1132021.1133550909831unknownunknownBacteroidetesBacteroides92.4683.9682.02
1|AE001437.168613.1701321041798unknownunknownFirmicutesAnaerococcus92.691.6181.49
16|CP017141.1132021.1133550914676unknownunknownBacteroidetesPorphyromonas92.5484.3881.89
16|CP017141.1132021.1133550923767unknownunknownBacteroidetesOdoribacter92.4684.3381.86
0|CP000282.3213358.3214883868799unknownunknownFirmicutesStreptococcus96.7191.3480.39
1|AE001437.168613.1701321186048unknownunknownFirmicutesPeptoniphilus80.2583.3883.39
1|AE001437.168613.170132856179unknownunknownFirmicutesStreptococcus98.3393.3180.34
1|AE001437.168613.170132856177unknownunknownFirmicutesLactococcus97.3592.2980.51
0|CP000282.3213358.3214883882554unknownunknownFirmicutesLeuconostoc87.7883.1781.64
14|CP000527.3172152.3173693873211unknownunknownFirmicutesAcidaminococcus97.0781.6281.8
0|CP000282.3213358.3214883844088unknownunknownFirmicutesLactobacillus97.4691.3180.17
16|CP017141.1132021.1133550973009unknownunknownBacteroidetesPrevotella91.6785.4181.63
1|AE001437.168613.170132741096unknownunknownFirmicutesLactobacillus92.8182.3180.99
0|CP000282.3213358.3214883836208unknownunknownFirmicutesLactobacillus97.4691.1679.93
1|AE001437.168613.170132919126unknownunknownFirmicutesunknown97.5693.6680.13
0|CP000282.3213358.3214883860637unknownunknownFirmicutesStreptococcus96.7191.1779.87
8|JN685484.1.1549864728unknownunknownFirmicutesMitsuokella100.086.3180.72
1|AE001437.168613.170132856145unknownunknownFirmicutesDialister82.4877.8482.18
14|CP000527.3172152.3173693747640unknownunknownFirmicutesPhascolarctobacterium97.0776.6181.3
8|JN685484.1.1549864727unknownunknownFirmicutesMegasphaera100.086.8480.38
16|CP017141.1132021.1133550909966unknownunknownBacteroidetesPrevotella92.4683.9580.85
16|CP017141.1132021.1133550988313unknownunknownBacteroidetesPrevotella90.7285.0481.04
16|CP017141.1132021.11335501118861unknownunknownBacteroidetesPrevotella92.4691.0980.47
16|CP017141.1132021.1133550914678unknownunknownBacteroidetesParaprevotella92.4684.0580.56
0|CP000282.3213358.3214883860635unknownunknownFirmicutesVeillonella97.0592.3479.19
14|CP000527.3172152.3173693860636unknownunknownFirmicutesMegasphaera93.6878.4880.83
16|CP017141.1132021.1133550983224unknownunknownBacteroidetesPrevotella89.4283.880.68
0|CP000282.3213358.3214883720465unknownunknownFusobacteriaFusobacterium98.784.6878.92
1|AE001437.168613.170132948164unknownunknownLentisphaeraeVictivallis98.2694.1278.68
1|AE001437.168613.1701321477250unknownunknownFirmicutesHoldemania79.2791.1881.49
1|AE001437.168613.170132896266unknownunknownFirmicutesunknown97.5693.5978.96
1|AE001437.168613.1701321013960unknownunknownProteobacteriaCampylobacter80.2579.1580.94
13|CP019066.1428494.1430021900735unknownunknownFirmicutesunknown99.6594.2478.5
1|AE001437.168613.1701321125287unknownunknownFirmicutesunknown95.9599.1478.63
1|AE001437.168613.170132919230unknownunknownFirmicutesSolobacterium97.5693.6578.51
13|CP019066.1428494.1430021933570unknownunknownVerrucomicrobiaAkkermansia98.6692.8278.23
1|AE001437.168613.170132948166unknownunknownFusobacteriaFusobacterium96.0992.1878.2
1|AE001437.168613.170132923883unknownunknownProteobacteriaCampylobacter80.2576.3780.15
16|CP017141.1132021.11335501354631unknownunknownBacteroidetesBacteroides80.2984.1380.55
7|AB663391.1.1473957817unknownunknownEuryarchaeotaMethanosphaera95.6878.5978.92
2|CP001964.1209818.12113251721090unknownunknownFirmicutesCoprobacillus77.7586.5180.44
13|CP019066.1428494.14300211317042unknownunknownFirmicutesBlautia77.384.4679.2
5|LC177116.1.14772972340unknownunknownBacteroidetesPrevotella86.7976.677.55
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusSubdoligranulum-0.6161.26e-1955.95e-193
speciesSubdoligranulum_unclassified-0.6132.12e-1935e-191
speciesAnaerotruncus_unclassified-0.5672.14e-1593.37e-157
genusAnaerotruncus-0.5373.95e-1404.66e-138
speciesEubacterium_siraeum-0.4779.33e-1078.81e-105
speciesLachnospiraceae_bacterium_7_1_58FAA-0.4228.56e-826.73e-80
familyRuminococcaceae-0.4221.13e-817.62e-80
speciesRuminococcus_gnavus0.4184.32e-802.55e-78
speciesMethanobrevibacter_smithii-0.4171.65e-798.65e-78
phylumEuryarchaeota-0.4172.18e-791.03e-77
classMethanobacteria-0.4151.19e-784.32e-77
orderMethanobacteriales-0.4151.19e-784.32e-77
familyMethanobacteriaceae-0.4151.19e-784.32e-77
genusMethanobrevibacter-0.4142.53e-787.27e-77
familyBacteroidales_noname-0.4142.62e-787.27e-77
genusBacteroidales_noname-0.4142.62e-787.27e-77
speciesBacteroidales_bacterium_ph8-0.4142.62e-787.27e-77
genusPseudoflavonifractor-0.4134.2e-781.04e-76
speciesPseudoflavonifractor_capillosus-0.4134.2e-781.04e-76
familyRikenellaceae-0.4071.13e-752.54e-74
genusAlistipes-0.4071.13e-752.54e-74
genusButyrivibrio-0.3951.1e-702.36e-69
speciesClostridium_leptum-0.3921.2e-692.46e-68
speciesAlistipes_senegalensis-0.395.63e-691.11e-67
classClostridia-0.3847.17e-671.3e-65
orderClostridiales-0.3847.18e-671.3e-65
genusBarnesiella-0.3767.26e-641.22e-62
speciesBarnesiella_intestinihominis-0.3767.26e-641.22e-62
phylumVerrucomicrobia-0.3769.74e-641.35e-62
classVerrucomicrobiae-0.3769.74e-641.35e-62
orderVerrucomicrobiales-0.3769.74e-641.35e-62
familyVerrucomicrobiaceae-0.3769.74e-641.35e-62
genusAkkermansia-0.3769.74e-641.35e-62
speciesAkkermansia_muciniphila-0.3769.74e-641.35e-62
genusCoprococcus-0.3633.32e-594.48e-58
speciesLachnospiraceae_bacterium_3_1_46FAA-0.3624.22e-595.53e-58
genusOdoribacter-0.3535.39e-566.88e-55
speciesCoprococcus_catus-0.3474.02e-544.99e-53
speciesAlistipes_shahii-0.3383.16e-513.82e-50
speciesMitsuokella_unclassified-0.3345.85e-506.9e-49
familyOxalobacteraceae-0.3321.8e-491.98e-48
genusOxalobacter-0.3321.8e-491.98e-48
speciesOxalobacter_formigenes-0.3321.8e-491.98e-48
speciesOdoribacter_splanchnicus-0.3247.3e-477.83e-46
genusMitsuokella-0.3231.56e-461.64e-45
familyFusobacteriaceae0.3153.26e-443.35e-43
phylumFusobacteria0.3143.67e-443.54e-43
classFusobacteriia0.3143.67e-443.54e-43
orderFusobacteriales0.3143.67e-443.54e-43
genusFusobacterium0.3144.75e-444.48e-43
speciesAlistipes_onderdonkii-0.3145.25e-444.86e-43
phylumFirmicutes-0.3114.06e-433.69e-42
speciesRuminococcus_bromii-0.3042.85e-412.54e-40
speciesRoseburia_hominis-0.3034.03e-413.52e-40
speciesAlistipes_putredinis-0.3012.44e-402.09e-39
speciesAlistipes_indistinctus-0.2971.84e-391.55e-38
genusCoprobacter-0.2956.1e-394.96e-38
speciesCoprobacter_fastidiosus-0.2956.1e-394.96e-38
familyPorphyromonadaceae-0.2957.32e-395.86e-38
speciesDorea_longicatena-0.2923.35e-382.64e-37
genusKlebsiella0.2919.74e-387.54e-37
genusRuminococcaceae_noname-0.291.4e-371.05e-36
speciesRuminococcaceae_bacterium_D16-0.291.4e-371.05e-36
speciesEubacterium_hallii-0.2884.03e-372.97e-36
speciesMethanobrevibacter_unclassified-0.2861.91e-361.39e-35
speciesKlebsiella_pneumoniae0.2837.29e-365.21e-35
speciesAlistipes_finegoldii-0.2838.83e-366.22e-35
genusRuminococcus-0.283.83e-352.66e-34
speciesCoprococcus_comes-0.285.13e-353.51e-34
speciesOscillibacter_unclassified-0.2796.72e-354.53e-34
classGammaproteobacteria0.2763.7e-342.46e-33
familyOscillospiraceae-0.2757.29e-344.71e-33
genusOscillibacter-0.2757.29e-344.71e-33
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.2691.88e-321.2e-31
familyEubacteriaceae-0.2684.87e-323.06e-31
genusEubacterium-0.2685.14e-323.19e-31
genusDesulfovibrio-0.2661.14e-316.99e-31
speciesButyrivibrio_unclassified-0.2652.54e-311.54e-30
speciesBifidobacterium_adolescentis-0.2628.89e-315.31e-30
speciesDesulfovibrio_desulfuricans-0.2611.84e-301.09e-29
speciesCoprobacillus_unclassified0.2589.12e-305.31e-29
phylumProteobacteria0.2561.78e-291.02e-28
genusDorea-0.2553.67e-292.09e-28
speciesRuminococcus_obeum-0.2521.38e-287.75e-28
speciesButyrivibrio_crossotus-0.254.51e-282.5e-27
speciesFusobacterium_mortiferum0.2471.75e-279.6e-27
speciesClostridium_nexile0.2455.79e-273.14e-26
speciesEubacterium_ramulus-0.2447.63e-274.05e-26
genusVeillonella0.2447.64e-274.05e-26
speciesCoprococcus_sp_ART55_1-0.2449.26e-274.86e-26
speciesBacteroides_uniformis-0.2431.32e-266.85e-26
speciesOlsenella_unclassified-0.2381.55e-257.95e-25
speciesAlistipes_sp_AP11-0.2373.22e-251.63e-24
orderEnterobacteriales0.2363.53e-251.75e-24
familyEnterobacteriaceae0.2363.53e-251.75e-24
genusAdlercreutzia-0.2356.57e-253.2e-24
speciesAdlercreutzia_equolifaciens-0.2356.57e-253.2e-24
speciesEubacterium_ventriosum-0.2357.88e-253.8e-24
speciesErysipelotrichaceae_bacterium_21_3-0.2282.23e-231.06e-22
speciesVeillonella_unclassified0.2273.12e-231.47e-22
genusPrevotella0.2263.74e-231.75e-22
speciesHaemophilus_parainfluenzae0.2264.48e-232.07e-22
speciesRuminococcus_lactaris-0.2256.06e-232.78e-22
speciesPrevotella_copri0.2257.66e-233.48e-22
speciesC2likevirus_unclassified-0.2248.92e-234e-22
genusHaemophilus0.2248.98e-234e-22
genusC2likevirus-0.2222.45e-221.08e-21
orderPasteurellales0.2214.08e-221.77e-21
familyPasteurellaceae0.2214.08e-221.77e-21
speciesCoprococcus_eutactus-0.2198.7e-223.73e-21
speciesVeillonella_parvula0.2172.01e-218.55e-21
classBacteroidia0.2172.31e-219.65e-21
orderBacteroidales0.2172.31e-219.65e-21
phylumBacteroidetes0.2172.39e-219.9e-21
genusCoprobacillus0.2147.39e-213.03e-20
familySiphoviridae-0.2147.76e-213.16e-20
speciesMegamonas_unclassified0.2112.79e-201.13e-19
speciesClostridium_ramosum0.2113.53e-201.41e-19
genusMegamonas0.214.4e-201.75e-19
speciesMegasphaera_micronuciformis0.2071.76e-196.92e-19
genusOlsenella-0.2062.45e-199.56e-19
speciesBacteroides_cellulosilyticus-0.2052.87e-191.11e-18
speciesEubacterium_rectale-0.2053.53e-191.35e-18
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2037.23e-192.75e-18
speciesVeillonella_atypica0.2011.42e-185.36e-18
speciesCollinsella_aerofaciens-0.2011.81e-186.78e-18
genusCollinsella-0.1985.94e-182.21e-17
genusEscherichia0.1951.69e-176.23e-17
speciesRuminococcus_champanellensis-0.1926.25e-172.29e-16
speciesHoldemania_filiformis-0.1916.78e-172.46e-16
phylumViruses_noname-0.1917.48e-172.67e-16
classViruses_noname-0.1917.48e-172.67e-16
speciesClostridium_sp_L2_50-0.1918.16e-172.9e-16
speciesEubacterium_eligens-0.191.08e-163.8e-16
speciesStreptococcus_mitis_oralis_pneumoniae0.191.22e-164.27e-16
genusHoldemania-0.1882.3e-167.98e-16
speciesVeillonella_dispar0.1865.6e-161.93e-15
speciesEscherichia_coli0.1821.94e-156.64e-15
speciesClostridium_bolteae0.184.84e-151.64e-14
orderCaudovirales-0.1788.34e-152.81e-14
speciesRoseburia_unclassified-0.1789.05e-153.03e-14
speciesRuminococcus_callidus-0.1761.76e-145.85e-14
speciesBacteroides_pectinophilus-0.1761.79e-145.91e-14
speciesEggerthella_unclassified0.1752.33e-147.64e-14
speciesBacteroides_stercoris0.1752.42e-147.88e-14
speciesFusobacterium_varium0.1752.77e-148.96e-14
genusEggerthella0.1735.38e-141.73e-13
orderCoriobacteriales-0.1727.32e-142.32e-13
familyCoriobacteriaceae-0.1727.32e-142.32e-13
speciesAnaerostipes_hadrus-0.171.21e-133.81e-13
speciesFusobacterium_ulcerans0.171.39e-134.34e-13
familyLachnospiraceae-0.1673.22e-131e-12
speciesMegamonas_rupellensis0.1656.15e-131.9e-12
speciesSubdoligranulum_sp_4_3_54A2FAA-0.1657.49e-132.3e-12
speciesLachnospiraceae_bacterium_2_1_58FAA0.1631.28e-123.9e-12
genusMegasphaera0.1631.37e-124.15e-12
classDeltaproteobacteria-0.1622.03e-126.03e-12
orderDesulfovibrionales-0.1622.03e-126.03e-12
familyDesulfovibrionaceae-0.1622.03e-126.03e-12
speciesLachnospiraceae_bacterium_6_1_63FAA0.1622.12e-126.25e-12
speciesMegamonas_hypermegale0.1586.1e-121.79e-11
speciesRuminococcus_torques-0.1579.17e-122.67e-11
speciesParabacteroides_merdae-0.1551.54e-114.46e-11
speciesEubacterium_cylindroides-0.1551.82e-115.24e-11
speciesMegamonas_funiformis0.1542.21e-116.32e-11
genusGordonibacter-0.1533.08e-118.71e-11
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speciesStreptococcus_gordonii0.1029.41e-061.73e-05
speciesParaprevotella_xylaniphila-0.1021.04e-051.9e-05
familyBacteroidaceae0.0991.83e-053.32e-05
genusBacteroides0.0991.83e-053.32e-05
speciesLactobacillus_ruminis-0.0963.2e-055.79e-05
speciesClostridiales_bacterium_1_7_47FAA0.0963.24e-055.84e-05
genusPeptostreptococcus0.0963.5e-056.28e-05
speciesLactobacillus_rhamnosus0.0953.97e-057.1e-05
speciesHaemophilus_paraphrohaemolyticus0.0944.75e-058.45e-05
genusBifidobacterium-0.0944.76e-058.45e-05
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speciesWeissella_confusa0.099.08e-050.000157
speciesBifidobacterium_dentium0.0890.0001250.000215
speciesStreptococcus_pasteurianus0.0880.0001340.00023
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speciesPeptostreptococcus_stomatis0.0870.0001620.000276
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speciesClostridium_clostridioforme0.0860.0002140.000358
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speciesStreptococcus_lutetiensis0.0840.0002940.000487
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speciesParaprevotella_unclassified-0.0780.0007280.00117
speciesEubacterium_dolichum0.0780.0007890.00126
speciesClostridium_citroniae0.0770.0007970.00127
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speciesEggerthella_lenta0.0730.001510.00232
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speciesLactococcus_garvieae0.0710.002090.00316
speciesEnterobacteria_phage_HK5440.0710.002140.00323
familyLactobacillaceae0.0710.002280.00343
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speciesDialister_invisus-0.0690.002640.00394
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speciesCoprobacillus_sp_29_1-0.0690.002730.00405
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speciesLachnospiraceae_bacterium_1_1_57FAA-0.0680.003150.00465
genusLactobacillus0.0680.003310.00487
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speciesBurkholderiales_bacterium_1_1_47-0.0660.004060.00586
speciesCollinsella_tanakaei0.0660.00410.0059
speciesPeptostreptococcaceae_noname_unclassified-0.0660.004260.00611
speciesTuricibacter_unclassified-0.0650.004720.00675
speciesWeissella_cibaria0.0650.00510.00727
speciesEnterococcus_faecalis0.0640.005410.00769
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genusTuricibacter-0.0640.005610.00793
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speciesLachnospiraceae_bacterium_5_1_57FAA0.0640.00580.00815
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speciesBacteroides_eggerthii-0.0630.006320.00883
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genusMyoviridae_noname0.0620.007810.0108
speciesLactobacillus_amylovorus0.0610.007890.0109
speciesSutterella_parvirubra0.0610.008180.0112
speciesBacteroides_barnesiae-0.0610.008580.0117
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speciesLactobacillus_oris0.060.009380.0128
speciesPorphyromonas_uenonis-0.060.00950.0129
genusPeptostreptococcaceae_noname-0.060.010.0135
speciesLactobacillus_crispatus0.0590.01090.0147
genusProteus0.0580.01170.0157
speciesLactobacillus_vaginalis0.0580.01180.0158
speciesProteus_mirabilis0.0580.01210.0162
familyClostridiales_noname-0.0560.01540.0205
speciesRoseburia_intestinalis-0.0550.01750.0233
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0550.0180.0239
genusMorganella0.0550.01810.0239
speciesMorganella_morganii0.0550.01810.0239
speciesParabacteroides_johnsonii-0.0540.01870.0246
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speciesBifidobacterium_angulatum-0.0530.02070.027
speciesBacteroides_xylanisolvens0.0530.02310.03
speciesGemella_morbillorum0.0520.02530.0328
familyLeuconostocaceae0.0520.02540.0328
genusLactococcus-0.050.02940.0379
genusPhascolarctobacterium-0.050.0320.041
speciesPhascolarctobacterium_succinatutens-0.050.0320.041
speciesParabacteroides_unclassified0.0490.03280.042
speciesBacteroides_sp_3_1_190.0490.03430.0438
speciesParabacteroides_distasonis-0.0480.0360.0458
speciesCollinsella_unclassified-0.0480.03730.0473
speciesClostridium_spiroforme-0.0470.04110.052
speciesCoprobacillus_sp_D6-0.0470.0430.0543
speciesPropionibacterium_freudenreichii-0.0450.05390.0678
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0440.05650.0709
genusFaecalibacterium-0.0430.06210.0775
speciesFaecalibacterium_prausnitzii-0.0430.06210.0775
speciesClostridium_sp_ATCC_BAA_4420.0430.06560.0817
classEpsilonproteobacteria0.0420.06680.0828
orderCampylobacterales0.0420.06680.0828
speciesRuminococcus_sp_JC3040.0420.07040.087
speciesLactobacillus_sanfranciscensis0.0420.07260.0894
genusPeptoniphilus-0.0420.07270.0894
speciesCollinsella_intestinalis0.0410.07810.0957
genusCampylobacter0.0390.09410.115
speciesTuricibacter_sanguinis-0.0380.1050.128
speciesBifidobacterium_animalis-0.0370.1090.133
speciesAcidaminococcus_fermentans-0.0370.1130.137
speciesAcidaminococcus_intestini0.0370.1140.138
speciesBacteroides_finegoldii0.0360.1150.139
speciesBacteroides_intestinalis-0.0350.1270.153
genusRoseburia-0.0350.1280.153
speciesErysipelotrichaceae_bacterium_3_1_530.0350.1280.153
speciesBacteroides_clarus-0.0340.1410.168
familyCampylobacteraceae0.0340.1420.169
speciesBacteroides_nordii-0.0320.1630.194
familyStaphylococcaceae0.0320.1690.2
speciesOscillibacter_sp_KLE_1728-0.0320.1720.203
familySutterellaceae0.0310.1840.217
familyPropionibacteriaceae-0.0310.1850.218
familySuccinivibrionaceae-0.030.1910.224
classBetaproteobacteria0.0290.2090.245
genusStaphylococcus0.0280.2190.256
genusSuccinatimonas-0.0270.2480.288
speciesSuccinatimonas_hippei-0.0270.2480.288
speciesLactobacillus_reuteri0.0260.2590.3
speciesHoldemania_sp_AP20.0260.2590.3
orderBurkholderiales0.0260.2650.305
genusClostridiaceae_noname-0.0260.2660.305
speciesClostridiaceae_bacterium_JC118-0.0260.2660.305
speciesClostridium_hathewayi0.0260.2690.308
speciesPrevotella_bivia-0.0250.2730.312
genusPyramidobacter0.0250.2870.326
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speciesLactococcus_phage_bIL67-0.0240.3070.348
speciesBacteroides_oleiciplenus0.0230.3110.352
speciesEubacterium_limosum-0.0220.3390.382
speciesBifidobacterium_bifidum-0.0220.3390.382
speciesDorea_unclassified-0.0220.3410.383
speciesMitsuokella_multacida-0.0210.3530.396
speciesLactobacillus_casei_paracasei-0.0210.360.403
speciesAlistipes_unclassified-0.0210.3650.407
speciesBacteroides_vulgatus0.020.380.423
genusLambdalikevirus-0.020.3880.431
genusBlautia-0.0190.4010.444
genusAcidaminococcus-0.0180.4330.479
speciesBacteroides_salyersiae0.0180.4380.483
speciesAcidaminococcus_unclassified-0.0170.4590.505
genusSlackia0.0170.4680.514
speciesBacteroides_massiliensis0.0160.4920.539
speciesSlackia_piriformis0.0150.5150.563
speciesBacteroides_sp_2_1_22-0.0140.5320.58
speciesClostridium_sp_KLE_1755-0.0130.5730.623
speciesRoseburia_inulinivorans0.0130.5820.632
speciesLactobacillus_delbrueckii0.0130.5840.632
speciesEubacterium_sp_3_1_31-0.0130.5880.635
speciesStreptococcus_phage_Sfi210.0120.5940.64
speciesBacteroides_ovatus0.0120.6040.649
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0120.6110.655
phylumSynergistetes0.0110.6260.665
classSynergistia0.0110.6260.665
orderSynergistales0.0110.6260.665
familySynergistaceae0.0110.6260.665
speciesClostridium_asparagiforme-0.0110.640.677
genusButyricicoccus0.0110.6410.677
speciesButyricicoccus_pullicaecorum0.0110.6410.677
speciesMegasphaera_elsdenii0.010.6510.686
speciesBacteroides_faecis-0.010.6580.692
familyPodoviridae-0.010.6620.694
orderPseudomonadales-0.010.6770.709
speciesBacteroides_fluxus0.0090.6940.725
genusSutterellaceae_unclassified0.0070.7520.784
speciesLactobacillus_plantarum-0.0070.7550.785
familyClostridiaceae-0.0070.7580.785
speciesBacteroides_sp_4_3_47FAA0.0070.7590.785
genusPropionibacterium-0.0070.760.785
familyViruses_noname-0.0070.7760.798
genusViruses_noname-0.0070.7760.798
speciesPeptostreptococcus_anaerobius-0.0060.7920.813
genusLeuconostoc0.0060.8010.82
speciesLactobacillus_acidophilus0.0060.8040.821
familyClostridiales_Family_XI_Incertae_Sedis0.0050.8130.829
genusClostridium-0.0050.8230.837
genusParvimonas-0.0050.8450.858
speciesParvimonas_unclassified-0.0040.8480.859
speciesKlebsiella_phage_KP36-0.0040.850.859
speciesBacteroides_coprophilus0.0040.8520.859
genusTunalikevirus0.0030.8940.9
speciesEnterococcus_faecium0.0010.9650.969
orderAeromonadales0.0010.980.982
genusClostridiales_noname0.00.9960.996
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201144.663649671074.196816400120.000607443169687623.0979
Crohns diseaseSpain17663.867528318243.203377314130.00470470343599664522.0948
Type II diabetesChina1831854.395692579284.731097442470.00695194279215326210.7803
ObesityDenmark1691233.30029171113.05878628220.0085610212399922377.35589
Type II diabetesSweden53923.526067061523.205201969070.01084915176354261.4426
Ulcerative colitisSpain78663.545908567213.203377314130.011381761966820076.6207
Type II diabetesDenmark752773.403432736823.190525816350.0332975136836622420.4019
Rheumatoid arthritisChina127983.954795742993.86260879840.4234938843841548151.6257
Colorectal cancerAustria64354.148355848694.429939066150.8807293992482671190.3742
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382