MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-23 18:00:21 PST
Job id & description: 2134, Tax_Class
Query type: dna
Count queries & homologs: 14, 102
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
1|AE001437.168613.170132511592unknownunknownFirmicutesClostridium98.7474.9290.89
14|CP000527.3172152.3173693882598unknownunknownProteobacteriaDesulfovibrio99.9284.291.79
14|CP000527.3172152.3173693882548unknownunknownProteobacteriaBilophila99.083.5691.79
13|CP019066.1428494.14300211081828unknownunknownActinobacteriaActinomyces97.0599.5887.59
0|CP000282.3213358.3214883877836unknownunknownProteobacteriaProteus97.6792.1586.8
0|CP000282.3213358.3214883856178unknownunknownProteobacteriaEnterobacter87.9282.3888.89
0|CP000282.3213358.32148831093628unknownunknownProteobacteriaProvidencia89.4391.9587.84
0|CP000282.3213358.3214883843984unknownunknownProteobacteriaEscherichia97.4691.2585.64
2|CP001964.1209818.1211325886983unknownunknownActinobacteriaBifidobacterium97.0684.5187.25
2|CP001964.1209818.1211325882600unknownunknownActinobacteriaBifidobacterium97.0684.1286.89
0|CP000282.3213358.3214883860634unknownunknownProteobacteriaHaemophilus88.9583.2686.58
1|AE001437.168613.170132957732unknownunknownFirmicutesClostridium98.1994.1684.77
2|CP001964.1209818.1211325864726unknownunknownActinobacteriaBifidobacterium95.4882.7186.56
0|CP000282.3213358.3214883896267unknownunknownProteobacteriaAggregatibacter88.9584.6286.16
13|CP019066.1428494.1430021943064unknownunknownActinobacteriaAtopobium99.6594.0784.04
1|AE001437.168613.170132928676unknownunknownFirmicutesAnaerofustis98.1294.1683.99
1|AE001437.168613.170132952897unknownunknownFirmicutesRuminococcus97.2893.3184.01
0|CP000282.3213358.3214883933546unknownunknownProteobacteriaSuccinatimonas97.4692.3683.9
16|CP017141.1132021.1133550919121unknownunknownBacteroidetesAlistipes100.090.9683.93
1|AE001437.168613.170132909967unknownunknownFirmicutesunknown97.6393.7583.65
1|AE001437.168613.170132914680unknownunknownFirmicutesClostridium91.5686.1584.77
1|AE001437.168613.170132909790unknownunknownFirmicutesunknown83.1178.386.33
1|AE001437.168613.170132948040unknownunknownFirmicutesEubacterium97.1493.1983.32
1|AE001437.168613.170132909879unknownunknownFirmicutesunknown83.1178.4485.93
1|AE001437.168613.170132909972unknownunknownFirmicutesunknown91.9186.5784.19
1|AE001437.168613.170132905338unknownunknownFirmicutesAnaerostipes92.0486.6184.02
1|AE001437.168613.170132923885unknownunknownFirmicutesButyrivibrio98.1294.1882.99
1|AE001437.168613.170132909876unknownunknownFirmicutesRuminococcus92.2586.7983.93
1|AE001437.168613.170132887138unknownunknownFirmicutesRoseburia92.0485.8683.97
1|AE001437.168613.170132909968unknownunknownFirmicutesunknown92.5387.1783.75
1|AE001437.168613.170132643255unknownunknownFirmicutesunknown92.2575.6483.78
1|AE001437.168613.170132962644unknownunknownFirmicutesunknown98.1296.0382.76
1|AE001437.168613.1701321076271unknownunknownFirmicutesEubacterium83.1183.7185.51
0|CP000282.3213358.3214883905339unknownunknownProteobacteriaSutterella88.484.3784.15
16|CP017141.1132021.1133550914677unknownunknownBacteroidetesBacteroides92.4683.9884.2
1|AE001437.168613.170132909973unknownunknownFirmicutesClostridium92.0486.783.51
1|AE001437.168613.170132909969unknownunknownFirmicutesDorea92.2586.983.51
1|AE001437.168613.170132882599unknownunknownFirmicutesGranulicatella98.1294.2882.48
1|AE001437.168613.170132905337unknownunknownFirmicutesClostridium83.1878.2785.18
16|CP017141.1132021.1133550919154unknownunknownBacteroidetesBacteroides92.4684.0983.97
16|CP017141.1132021.1133550882601unknownunknownBacteroidetesBacteroides92.4683.0283.88
1|AE001437.168613.170132905340unknownunknownFirmicutesBlautia92.0486.683.37
13|CP019066.1428494.1430021948025unknownunknownActinobacteriaEggerthella99.6593.9982.36
1|AE001437.168613.170132909964unknownunknownFirmicutesEubacterium92.0486.7183.3
1|AE001437.168613.170132909970unknownunknownFirmicutesClostridium97.6393.7582.35
16|CP017141.1132021.1133550919127unknownunknownBacteroidetesBacteroides92.4684.0983.71
1|AE001437.168613.170132824698unknownunknownFirmicutesLactobacillus92.5385.7783.15
1|AE001437.168613.170132919228unknownunknownFirmicutesAnaerotruncus91.786.3883.38
1|AE001437.168613.170132909821unknownunknownFirmicutesEubacterium92.5387.0583.08
16|CP017141.1132021.1133550923884unknownunknownBacteroidetesBacteroides92.4684.3283.59
16|CP017141.1132021.1133550919229unknownunknownBacteroidetesBacteroides92.5484.3483.48
1|AE001437.168613.170132860628unknownunknownFirmicutesLactobacillus92.5387.1982.8
16|CP017141.1132021.1133550919231unknownunknownBacteroidetesBacteroides92.4684.283.26
1|AE001437.168613.170132943183unknownunknownFirmicutesFaecalibacterium96.392.3982.19
1|AE001437.168613.170132864729unknownunknownFirmicutesEnterococcus92.687.682.65
1|AE001437.168613.1701321047730unknownunknownFirmicutesOribacterium91.5690.9782.73
16|CP017141.1132021.1133550909971unknownunknownBacteroidetesBacteroides92.4684.0783.11
1|AE001437.168613.170132821203unknownunknownFirmicutesWeissella92.685.6182.42
16|CP017141.1132021.1133550914679unknownunknownBacteroidetesBacteroides93.7785.2282.58
1|AE001437.168613.170132864662unknownunknownFirmicutesLactobacillus83.6778.9283.4
16|CP017141.1132021.1133550909965unknownunknownBacteroidetesBacteroides92.4683.9582.43
13|CP019066.1428494.1430021948165unknownunknownActinobacteriaCollinsella96.8491.4481.31
0|CP000282.3213358.3214883896243unknownunknownProteobacteriaunknown87.1782.5582.31
1|AE001437.168613.170132868909unknownunknownFirmicutesGemella97.1493.3480.88
0|CP000282.3213358.3214883836310unknownunknownFirmicutesLactobacillus88.9582.5681.87
0|CP000282.3213358.3214883832524unknownunknownFirmicutesLactobacillus89.9883.1781.73
16|CP017141.1132021.1133550909831unknownunknownBacteroidetesBacteroides92.4683.9682.02
1|AE001437.168613.1701321041798unknownunknownFirmicutesAnaerococcus92.691.6181.49
16|CP017141.1132021.1133550914676unknownunknownBacteroidetesPorphyromonas92.5484.3881.89
16|CP017141.1132021.1133550923767unknownunknownBacteroidetesOdoribacter92.4684.3381.86
0|CP000282.3213358.3214883868799unknownunknownFirmicutesStreptococcus96.7191.3480.39
1|AE001437.168613.1701321186048unknownunknownFirmicutesPeptoniphilus80.2583.3883.39
1|AE001437.168613.170132856179unknownunknownFirmicutesStreptococcus98.3393.3180.34
1|AE001437.168613.170132856177unknownunknownFirmicutesLactococcus97.3592.2980.51
0|CP000282.3213358.3214883882554unknownunknownFirmicutesLeuconostoc87.7883.1781.64
14|CP000527.3172152.3173693873211unknownunknownFirmicutesAcidaminococcus97.0781.6281.8
0|CP000282.3213358.3214883844088unknownunknownFirmicutesLactobacillus97.4691.3180.17
16|CP017141.1132021.1133550973009unknownunknownBacteroidetesPrevotella91.6785.4181.63
1|AE001437.168613.170132741096unknownunknownFirmicutesLactobacillus92.8182.3180.99
1|AE001437.168613.170132919126unknownunknownFirmicutesunknown97.5693.6680.13
8|JN685484.1.1549864728unknownunknownFirmicutesMitsuokella100.086.3180.72
1|AE001437.168613.170132856145unknownunknownFirmicutesDialister82.4877.8482.18
14|CP000527.3172152.3173693747640unknownunknownFirmicutesPhascolarctobacterium97.0776.6181.3
1|AE001437.168613.170132836208unknownunknownFirmicutesLactobacillus83.6778.1281.7
8|JN685484.1.1549864727unknownunknownFirmicutesMegasphaera100.086.8480.38
16|CP017141.1132021.1133550909966unknownunknownBacteroidetesPrevotella92.4683.9580.85
16|CP017141.1132021.1133550988313unknownunknownBacteroidetesPrevotella90.7285.0481.04
16|CP017141.1132021.11335501118861unknownunknownBacteroidetesPrevotella92.4691.0980.47
16|CP017141.1132021.1133550914678unknownunknownBacteroidetesParaprevotella92.4684.0580.56
13|CP019066.1428494.1430021860635unknownunknownFirmicutesVeillonella83.3577.7881.36
14|CP000527.3172152.3173693860636unknownunknownFirmicutesMegasphaera93.6878.4880.83
8|JN685484.1.1549860637unknownunknownFirmicutesStreptococcus82.1370.382.42
16|CP017141.1132021.1133550983224unknownunknownBacteroidetesPrevotella89.4283.880.68
1|AE001437.168613.1701321477250unknownunknownFirmicutesHoldemania79.2791.1881.49
1|AE001437.168613.1701321013960unknownunknownProteobacteriaCampylobacter80.2579.1580.94
1|AE001437.168613.170132900735unknownunknownFirmicutesunknown83.3278.9180.05
14|CP000527.3172152.3173693933570unknownunknownVerrucomicrobiaAkkermansia90.7576.9480.22
1|AE001437.168613.170132923883unknownunknownProteobacteriaCampylobacter80.2576.3780.15
16|CP017141.1132021.11335501354631unknownunknownBacteroidetesBacteroides80.2984.1380.55
8|JN685484.1.1549919230unknownunknownFirmicutesSolobacterium82.2170.9880.54
8|JN685484.1.15491125287unknownunknownFirmicutesunknown82.1377.0980.36
2|CP001964.1209818.12113251721090unknownunknownFirmicutesCoprobacillus77.7586.5180.44
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusSubdoligranulum-0.6313.07e-2081.45e-205
speciesSubdoligranulum_unclassified-0.6291.11e-2062.62e-204
speciesAnaerotruncus_unclassified-0.5741.21e-1641.9e-162
genusAnaerotruncus-0.5261.13e-1331.33e-131
speciesEubacterium_siraeum-0.5031.36e-1201.28e-118
speciesRuminococcus_gnavus0.4569.07e-977.14e-95
speciesMethanobrevibacter_smithii-0.4472.49e-921.68e-90
phylumEuryarchaeota-0.4451.28e-917.55e-90
classMethanobacteria-0.4444.9e-912.1e-89
orderMethanobacteriales-0.4444.9e-912.1e-89
familyMethanobacteriaceae-0.4444.9e-912.1e-89
genusMethanobrevibacter-0.4422.43e-909.56e-89
familyRuminococcaceae-0.4345.93e-872.15e-85
genusButyrivibrio-0.4171.3e-794.38e-78
genusPseudoflavonifractor-0.4143.16e-789.32e-77
speciesPseudoflavonifractor_capillosus-0.4143.16e-789.32e-77
speciesLachnospiraceae_bacterium_7_1_58FAA-0.4121.17e-773.25e-76
familyBacteroidales_noname-0.4113.45e-778.14e-76
genusBacteroidales_noname-0.4113.45e-778.14e-76
speciesBacteroidales_bacterium_ph8-0.4113.45e-778.14e-76
speciesAlistipes_senegalensis-0.4115.4e-771.21e-75
genusCoprococcus-0.4036.97e-741.5e-72
classClostridia-0.3987.58e-721.49e-70
orderClostridiales-0.3987.59e-721.49e-70
speciesClostridium_leptum-0.3971.36e-712.57e-70
phylumVerrucomicrobia-0.3882.71e-684.13e-67
classVerrucomicrobiae-0.3882.71e-684.13e-67
orderVerrucomicrobiales-0.3882.71e-684.13e-67
familyVerrucomicrobiaceae-0.3882.71e-684.13e-67
genusAkkermansia-0.3882.71e-684.13e-67
speciesAkkermansia_muciniphila-0.3882.71e-684.13e-67
speciesCoprococcus_catus-0.3883.79e-685.59e-67
genusBarnesiella-0.3862.44e-673.39e-66
speciesBarnesiella_intestinihominis-0.3862.44e-673.39e-66
speciesLachnospiraceae_bacterium_3_1_46FAA-0.3772.51e-643.38e-63
familyRikenellaceae-0.3722.02e-622.58e-61
genusAlistipes-0.3722.02e-622.58e-61
speciesMitsuokella_unclassified-0.3443.43e-534.26e-52
genusOxalobacter-0.346.44e-527.6e-51
speciesOxalobacter_formigenes-0.346.44e-527.6e-51
familyOxalobacteraceae-0.347.99e-529.2e-51
genusOdoribacter-0.3361.04e-501.17e-49
speciesDorea_longicatena-0.3361.47e-501.61e-49
genusMitsuokella-0.3331.21e-491.3e-48
phylumFirmicutes-0.3331.45e-491.52e-48
speciesAlistipes_shahii-0.3275.7e-485.85e-47
speciesEubacterium_hallii-0.3222.62e-462.63e-45
genusFusobacterium0.3191.97e-451.94e-44
familyFusobacteriaceae0.3183.44e-453.31e-44
phylumFusobacteria0.3184.4e-453.99e-44
classFusobacteriia0.3184.4e-453.99e-44
orderFusobacteriales0.3184.4e-453.99e-44
speciesRoseburia_hominis-0.3175.12e-454.56e-44
speciesCoprococcus_comes-0.3121.65e-431.44e-42
speciesAlistipes_indistinctus-0.3091.29e-421.11e-41
speciesOdoribacter_splanchnicus-0.3051.43e-411.21e-40
speciesRuminococcus_bromii-0.3028.62e-417.14e-40
speciesMethanobrevibacter_unclassified-0.3021.26e-401.03e-39
genusDorea-0.3011.83e-401.46e-39
genusCoprobacter-0.33.19e-402.47e-39
speciesCoprobacter_fastidiosus-0.33.19e-402.47e-39
genusKlebsiella0.34.4e-403.35e-39
speciesBifidobacterium_adolescentis-0.2941.64e-381.23e-37
classGammaproteobacteria0.2932.09e-381.54e-37
speciesAlistipes_onderdonkii-0.2924.01e-382.91e-37
speciesKlebsiella_pneumoniae0.291.11e-377.89e-37
genusRuminococcus-0.291.12e-377.89e-37
genusRuminococcaceae_noname-0.291.72e-371.18e-36
speciesRuminococcaceae_bacterium_D16-0.291.72e-371.18e-36
speciesRuminococcus_obeum-0.2883.75e-372.53e-36
speciesAlistipes_putredinis-0.2885.88e-373.91e-36
speciesCoprobacillus_unclassified0.283.96e-352.6e-34
genusDesulfovibrio-0.2781.66e-341.07e-33
phylumProteobacteria0.2773.54e-342.26e-33
familyEubacteriaceae-0.2765.87e-343.69e-33
genusEubacterium-0.2756.47e-344.02e-33
speciesButyrivibrio_crossotus-0.2732.72e-331.67e-32
speciesEubacterium_ramulus-0.2724.99e-333.02e-32
speciesAlistipes_finegoldii-0.271.68e-321e-31
speciesButyrivibrio_unclassified-0.271.73e-321.02e-31
speciesCoprococcus_sp_ART55_1-0.2692.82e-321.64e-31
speciesOlsenella_unclassified-0.2675.35e-323.08e-31
speciesDesulfovibrio_desulfuricans-0.2611.74e-309.89e-30
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.263.59e-302.02e-29
speciesClostridium_nexile0.2594.29e-302.38e-29
orderEnterobacteriales0.2553.11e-291.69e-28
familyEnterobacteriaceae0.2553.11e-291.69e-28
genusVeillonella0.2521.6e-288.58e-28
speciesCollinsella_aerofaciens-0.2471.81e-279.6e-27
speciesOscillibacter_unclassified-0.2471.84e-279.65e-27
genusAdlercreutzia-0.2463.84e-271.97e-26
speciesAdlercreutzia_equolifaciens-0.2463.84e-271.97e-26
familyPorphyromonadaceae-0.2455.59e-272.84e-26
speciesEubacterium_ventriosum-0.2413.34e-261.68e-25
familyOscillospiraceae-0.245.78e-262.84e-25
genusOscillibacter-0.245.78e-262.84e-25
genusCollinsella-0.246.26e-263.05e-25
genusCoprobacillus0.2364.41e-252.12e-24
classBacteroidia0.2355.92e-252.79e-24
orderBacteroidales0.2355.92e-252.79e-24
phylumBacteroidetes0.2356.13e-252.86e-24
speciesC2likevirus_unclassified-0.2357.98e-253.69e-24
speciesCoprococcus_eutactus-0.2341.18e-245.41e-24
speciesHaemophilus_parainfluenzae0.2331.46e-246.63e-24
speciesVeillonella_unclassified0.2331.68e-247.55e-24
genusC2likevirus-0.2322.3e-241.02e-23
speciesRuminococcus_lactaris-0.2322.49e-241.1e-23
genusHaemophilus0.2322.93e-241.28e-23
genusOlsenella-0.2322.98e-241.29e-23
speciesFusobacterium_mortiferum0.2323.46e-241.48e-23
familySiphoviridae-0.2314.67e-241.99e-23
speciesVeillonella_parvula0.2291.2e-235.06e-23
speciesErysipelotrichaceae_bacterium_21_3-0.2291.26e-235.26e-23
orderPasteurellales0.2281.54e-236.32e-23
familyPasteurellaceae0.2281.54e-236.32e-23
speciesAlistipes_sp_AP11-0.2272.31e-239.4e-23
speciesClostridium_ramosum0.2241.27e-225.12e-22
speciesClostridium_bolteae0.2214.98e-221.99e-21
speciesMegasphaera_micronuciformis0.225.52e-222.19e-21
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2172.31e-219.09e-21
speciesEubacterium_rectale-0.2163.31e-211.29e-20
speciesEggerthella_unclassified0.2163.62e-211.4e-20
genusEscherichia0.2155.51e-212.11e-20
genusEggerthella0.2122.03e-207.73e-20
speciesClostridium_sp_L2_50-0.2122.11e-207.97e-20
familyBacteroidaceae0.2112.43e-209.03e-20
genusBacteroides0.2112.43e-209.03e-20
speciesEubacterium_biforme-0.2081.16e-194.28e-19
phylumViruses_noname-0.2071.25e-194.54e-19
classViruses_noname-0.2071.25e-194.54e-19
speciesMegamonas_unclassified0.2071.7e-196.13e-19
speciesBacteroides_stercoris0.2062.54e-199.08e-19
genusMegamonas0.2062.58e-199.16e-19
speciesRuminococcus_champanellensis-0.2044.43e-191.56e-18
speciesVeillonella_atypica0.2038.14e-192.85e-18
speciesEscherichia_coli0.2021.04e-183.61e-18
genusErysipelotrichaceae_noname-0.2021.33e-184.58e-18
classErysipelotrichia-0.2011.56e-185.26e-18
orderErysipelotrichales-0.2011.56e-185.26e-18
familyErysipelotrichaceae-0.2011.56e-185.26e-18
orderCoriobacteriales-0.22.66e-188.84e-18
familyCoriobacteriaceae-0.22.66e-188.84e-18
speciesEubacterium_eligens-0.1986.12e-182.02e-17
speciesVeillonella_dispar0.1951.84e-176.03e-17
speciesRuminococcus_callidus-0.1951.94e-176.32e-17
speciesDorea_formicigenerans-0.1934.17e-171.35e-16
orderCaudovirales-0.1916.96e-172.23e-16
speciesLachnospiraceae_bacterium_2_1_58FAA0.191.4e-164.46e-16
familyLachnospiraceae-0.1891.86e-165.89e-16
speciesBacteroides_uniformis-0.1873.22e-161.01e-15
speciesBacteroides_pectinophilus-0.1874.12e-161.29e-15
speciesStreptococcus_mitis_oralis_pneumoniae0.1865.13e-161.59e-15
speciesBacteroides_cellulosilyticus-0.1856.43e-161.98e-15
speciesFusobacterium_ulcerans0.1857.19e-162.2e-15
speciesAnaerostipes_hadrus-0.1841.11e-153.38e-15
speciesRoseburia_unclassified-0.1841.13e-153.42e-15
speciesHoldemania_filiformis-0.1831.76e-155.29e-15
speciesFusobacterium_varium0.1787.68e-152.29e-14
speciesLachnospiraceae_bacterium_6_1_63FAA0.1789.78e-152.9e-14
genusMegasphaera0.1725.89e-141.74e-13
speciesEubacterium_cylindroides-0.1682.85e-138.36e-13
speciesLachnospiraceae_bacterium_1_4_56FAA0.1673.82e-131.11e-12
genusHoldemania-0.1664.77e-131.38e-12
genusMethanosphaera-0.1649.35e-132.67e-12
speciesMethanosphaera_stadtmanae-0.1649.35e-132.67e-12
speciesRuminococcus_torques-0.1621.88e-125.35e-12
speciesMegamonas_rupellensis0.1612.81e-127.94e-12
speciesStreptococcus_thermophilus-0.163.95e-121.11e-11
speciesOdoribacter_unclassified-0.1594.9e-121.37e-11
speciesLactococcus_phage_P680-0.1595.14e-121.43e-11
genusPantoea0.1586.95e-121.91e-11
speciesPantoea_unclassified0.1586.95e-121.91e-11
genusFlavonifractor0.1542.31e-116.27e-11
speciesFlavonifractor_plautii0.1542.31e-116.27e-11
speciesSubdoligranulum_sp_4_3_54A2FAA-0.1533.35e-119.04e-11
speciesPrevotella_buccae0.1523.71e-119.95e-11
speciesClostridium_symbiosum0.1523.73e-119.95e-11
speciesFusobacterium_nucleatum0.1514.87e-111.29e-10
speciesParabacteroides_merdae-0.1498.56e-112.26e-10
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genusGemella0.1338.71e-091.92e-08
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speciesBifidobacterium_pseudocatenulatum0.1311.23e-082.69e-08
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genusPrevotella0.1255.42e-081.13e-07
speciesStreptococcus_sanguinis0.1255.95e-081.24e-07
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speciesSutterella_wadsworthensis-0.122.17e-074.29e-07
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speciesPorphyromonas_asaccharolytica-0.1192.5e-074.9e-07
speciesPrevotella_copri0.1183.14e-076.12e-07
speciesBifidobacterium_breve0.1173.6e-076.99e-07
speciesPrevotella_stercorea0.1165.36e-071.04e-06
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speciesClostridium_citroniae0.1155.85e-071.12e-06
speciesLactobacillus_mucosae0.1156.89e-071.32e-06
speciesHaemophilus_sputorum0.1147.1e-071.35e-06
genusActinobacillus0.1139.37e-071.77e-06
speciesActinobacillus_unclassified0.1139.37e-071.77e-06
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speciesClostridium_clostridioforme0.111.68e-063.15e-06
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genusSutterella-0.1064.07e-067.56e-06
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speciesLactococcus_phage_phi7-0.1037.53e-061.38e-05
genusPorphyromonas-0.1021.05e-051.91e-05
genusDialister-0.11.54e-052.8e-05
genusPhascolarctobacterium-0.0991.65e-052.97e-05
speciesPhascolarctobacterium_succinatutens-0.0991.65e-052.97e-05
genusBifidobacterium-0.0991.81e-053.25e-05
genusStreptococcus0.0982.26e-054.04e-05
genusSolobacterium0.0982.35e-054.17e-05
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familyBifidobacteriaceae-0.0972.46e-054.32e-05
speciesStreptococcus_gordonii0.0963.04e-055.31e-05
genusActinomyces0.0963.19e-055.56e-05
speciesStreptococcus_pasteurianus0.0944.35e-057.55e-05
familyActinomycetaceae0.0944.77e-058.25e-05
speciesStreptococcus_infantarius0.0945.03e-058.66e-05
speciesBacteroides_salanitronis-0.0935.48e-059.41e-05
speciesHaemophilus_paraphrohaemolyticus0.0935.81e-059.94e-05
familyStreptococcaceae0.0917.68e-050.000131
speciesDialister_succinatiphilus-0.0918.24e-050.00014
speciesKlebsiella_unclassified0.0918.7e-050.000147
speciesLactococcus_phage_jm2-0.099.29e-050.000157
genusParabacteroides-0.0890.000120.000202
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speciesKlebsiella_sp_MS_92_30.0870.0001710.000285
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speciesStreptococcus_australis0.0850.0002220.000368
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speciesStreptococcus_lutetiensis0.0850.0002440.000401
genusPeptostreptococcus0.0850.0002470.000405
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speciesBacteroides_xylanisolvens0.0840.0002960.000478
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speciesParabacteroides_goldsteinii-0.0820.0003680.000585
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speciesLachnospiraceae_bacterium_8_1_57FAA-0.0810.0004560.000715
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genusTuricibacter-0.0770.0008550.00133
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speciesPeptostreptococcus_stomatis0.0760.0010.00154
speciesTuricibacter_unclassified-0.0750.001120.00171
speciesKlebsiella_oxytoca0.0750.001120.00171
speciesEnterobacteria_phage_HK5440.0750.001240.00188
speciesParabacteroides_sp_D13-0.0750.001240.00188
familyPeptostreptococcaceae-0.0730.00160.00242
speciesMegasphaera_unclassified0.0720.001760.00265
speciesBifidobacterium_angulatum-0.0720.001870.00281
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genusPeptostreptococcaceae_noname-0.0710.00210.00314
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speciesEggerthella_sp_1_3_56FAA0.0710.002150.00319
speciesBacteroides_coprocola0.070.002390.00354
speciesClostridium_hathewayi0.0690.002780.0041
speciesWeissella_cibaria0.0690.002820.00415
speciesCollinsella_tanakaei0.0690.002910.00427
speciesBacteroides_eggerthii-0.0690.002990.00437
speciesBifidobacterium_longum-0.0680.003270.00476
speciesBacteroides_ovatus0.0680.003420.00497
speciesCoprobacillus_sp_29_1-0.0660.004030.00583
genusProteus0.0660.004550.00657
speciesBacteroides_barnesiae-0.0650.004660.00671
speciesLactobacillus_gasseri0.0650.004880.007
genusLactococcus-0.0650.005040.00721
speciesSutterella_parvirubra0.0650.005110.00726
speciesLactobacillus_crispatus0.0650.005110.00726
speciesProteus_mirabilis0.0640.005780.00819
speciesLactococcus_garvieae0.0630.00620.00876
speciesParabacteroides_unclassified0.0630.006270.00883
speciesBacteroides_vulgatus0.0630.006410.009
speciesLactobacillus_amylovorus0.0620.007450.0104
speciesStreptococcus_mutans0.0620.007460.0104
speciesLactobacillus_vaginalis0.0610.008690.0121
genusMyoviridae_noname0.060.009080.0126
speciesBifidobacterium_animalis-0.060.009170.0127
speciesParabacteroides_sp_20_3-0.060.009350.0129
genusEnterococcus0.060.009650.0133
speciesLactobacillus_oris0.060.009660.0133
speciesEnterococcus_faecalis0.060.009920.0136
orderActinomycetales0.0590.01040.0142
genusMorganella0.0590.01090.0148
speciesMorganella_morganii0.0590.01090.0148
familyEnterococcaceae0.0590.01110.015
speciesPropionibacterium_freudenreichii-0.0580.01160.0156
speciesClostridium_sp_ATCC_BAA_4420.0570.01410.019
speciesBacteroides_sp_3_1_190.0560.01480.0198
speciesPorphyromonas_uenonis-0.0560.01490.0199
speciesDialister_invisus-0.0550.0180.024
speciesBacteroides_sp_1_1_6-0.0540.01880.025
familyLeuconostocaceae0.0530.02150.0285
speciesParabacteroides_johnsonii-0.0530.02210.0292
speciesTuricibacter_sanguinis-0.0520.02460.0324
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0520.02580.0338
speciesRoseburia_intestinalis-0.0520.02580.0338
speciesCollinsella_intestinalis0.0510.02680.035
genusParasutterella-0.0510.02770.036
speciesParasutterella_excrementihominis-0.0510.02770.036
speciesLactobacillus_sanfranciscensis0.0510.02830.0367
speciesMitsuokella_multacida-0.050.02960.0383
speciesClostridium_spiroforme-0.050.02990.0386
familyLactobacillaceae0.050.0320.0412
speciesOscillibacter_sp_KLE_1745-0.0490.03450.0442
speciesGemella_morbillorum0.0480.03630.0464
classEpsilonproteobacteria0.0480.0380.0483
orderCampylobacterales0.0480.0380.0483
speciesErysipelotrichaceae_bacterium_3_1_530.0470.04040.0513
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0470.04180.0529
genusCampylobacter0.0470.0420.053
genusLactobacillus0.0470.04230.0532
speciesCoprobacillus_sp_D6-0.0450.05180.065
classNegativicutes0.0450.05260.0657
orderSelenomonadales0.0450.05260.0657
genusCoriobacteriaceae_noname-0.0440.0580.0722
speciesCoriobacteriaceae_bacterium_phI-0.0430.06050.0751
speciesAcidaminococcus_intestini0.0420.0680.0842
familyCampylobacteraceae0.0420.06890.0851
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0410.07710.095
speciesBacteroides_oleiciplenus0.0410.07730.095
speciesStreptococcus_parasanguinis0.0410.07760.0951
speciesAcidaminococcus_fermentans-0.0410.0780.0954
genusFaecalibacterium-0.0410.07990.0972
speciesFaecalibacterium_prausnitzii-0.0410.07990.0972
speciesHoldemania_sp_AP20.0390.08840.107
genusPeptoniphilus-0.0390.0920.111
familyPropionibacteriaceae-0.0380.10.121
genusPyramidobacter0.0370.1070.129
speciesPyramidobacter_piscolens0.0370.1070.129
familySuccinivibrionaceae-0.0360.1170.14
familyBurkholderiales_noname-0.0350.1330.159
speciesBacteroides_clarus-0.0340.1390.166
genusSuccinatimonas-0.0330.1560.185
speciesSuccinatimonas_hippei-0.0330.1560.185
genusBurkholderiales_noname-0.0320.1630.192
speciesBurkholderiales_bacterium_1_1_47-0.0320.1630.192
speciesBacteroides_faecis-0.0320.1710.201
familyPrevotellaceae0.0310.1780.209
speciesBacteroides_salyersiae0.030.1960.23
speciesBifidobacterium_bifidum-0.030.1970.23
speciesLactobacillus_casei_paracasei-0.030.1980.231
speciesCollinsella_unclassified-0.030.1990.231
genusRoseburia-0.0280.2260.262
classBetaproteobacteria0.0270.2410.279
speciesBacteroides_finegoldii0.0270.2460.284
speciesParabacteroides_distasonis-0.0260.2630.303
genusClostridiales_noname0.0260.2660.305
familyStaphylococcaceae0.0240.2980.341
genusBlautia-0.0240.2990.341
phylumSynergistetes0.0240.3010.341
classSynergistia0.0240.3010.341
orderSynergistales0.0240.3010.341
familySynergistaceae0.0240.3010.341
speciesLactococcus_phage_bIL67-0.0230.3120.352
speciesRuminococcus_sp_JC3040.0230.3140.354
orderBurkholderiales0.0230.3260.366
speciesClostridium_asparagiforme0.0220.3330.373
speciesBacteroides_intestinalis-0.0220.340.38
genusButyricicoccus0.0220.3510.391
speciesButyricicoccus_pullicaecorum0.0220.3510.391
genusLambdalikevirus-0.020.3760.417
speciesBacteroides_massiliensis0.0210.3760.417
genusStaphylococcus0.020.3860.427
familySutterellaceae0.020.3880.428
genusPropionibacterium-0.020.3960.436
speciesBacteroides_coprophilus-0.0190.4060.446
speciesAlistipes_unclassified-0.0180.4380.48
speciesPrevotella_bivia-0.0180.440.481
speciesLactobacillus_reuteri0.0170.470.512
genusParvimonas-0.0170.4710.512
speciesParvimonas_unclassified-0.0170.4730.512
familyClostridiales_noname-0.0170.4740.512
speciesEubacterium_limosum-0.0170.4740.512
speciesDorea_unclassified-0.0160.4980.537
genusAcidaminococcus-0.0150.5090.547
speciesOscillibacter_sp_KLE_1728-0.0150.5120.549
speciesStreptococcus_phage_Sfi210.0150.5260.563
speciesAcidaminococcus_unclassified-0.0150.5310.567
speciesBacteroides_sp_4_3_47FAA0.0140.5360.571
speciesPeptostreptococcus_anaerobius-0.0140.5430.577
speciesBacteroides_fluxus0.0120.60.636
speciesBacteroides_nordii-0.0120.6080.643
orderPseudomonadales-0.0120.6090.643
familyViruses_noname-0.0120.6170.649
genusViruses_noname-0.0120.6170.649
speciesClostridium_sp_KLE_1755-0.0110.6220.652
genusClostridium0.0110.6230.652
speciesMegasphaera_elsdenii0.0110.6340.662
speciesLactobacillus_plantarum-0.0110.6390.666
genusClostridiaceae_noname-0.010.6510.675
speciesClostridiaceae_bacterium_JC118-0.010.6510.675
familyClostridiaceae0.010.6670.69
speciesEubacterium_sp_3_1_310.0090.6920.715
speciesRoseburia_inulinivorans0.0080.7170.739
familyPodoviridae-0.0080.7270.748
speciesLactobacillus_delbrueckii0.0070.7750.795
speciesKlebsiella_phage_KP36-0.0060.7830.802
genusSutterellaceae_unclassified-0.0040.8750.894
speciesSlackia_piriformis-0.0030.8970.914
familyClostridiales_Family_XI_Incertae_Sedis-0.0030.9030.919
speciesEnterococcus_faecium0.0030.9080.922
genusTunalikevirus0.0020.9270.939
genusSlackia0.0020.9340.944
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0020.9380.946
speciesLactobacillus_acidophilus-0.0010.960.964
speciesBacteroides_sp_2_1_22-0.0010.960.964
orderAeromonadales-0.0010.970.972
genusLeuconostoc0.00.9940.994
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201144.324416308153.934117895460.00120896409579762925.6273
Crohns diseaseSpain17663.760080210233.033607870690.00155029732533473715.7506
ObesityDenmark1691233.101153831352.911082207170.0088558561161422577.42166
Ulcerative colitisSpain78663.290233764983.033607870690.012069873494620856.87801
Type II diabetesDenmark752773.216663499313.01187980760.0196591786379522917.1403
Type II diabetesChina1831854.14412483784.367503997750.021734735219500416.5372
Type II diabetesSweden53923.252215384922.996150050610.045209054614916345.53336
Rheumatoid arthritisChina127983.766359903343.66551187440.2888602527721176839.2437
Colorectal cancerAustria64353.825552052044.086058601890.9387411789932809495.0535
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382