MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-23 18:01:54 PST
Job id & description: 2135, Tax_Class
Query type: dna
Count queries & homologs: 14, 47
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 90%, 90%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
13|CP019066.1428494.14300211081828unknownunknownActinobacteriaActinomyces97.0599.5887.59
0|CP000282.3213358.3214883877836unknownunknownProteobacteriaProteus97.6792.1586.8
0|CP000282.3213358.3214883843984unknownunknownProteobacteriaEscherichia97.4691.2585.64
13|CP019066.1428494.1430021886983unknownunknownActinobacteriaBifidobacterium99.8693.2985.1
13|CP019066.1428494.1430021882600unknownunknownActinobacteriaBifidobacterium99.8692.7884.53
1|AE001437.168613.170132957732unknownunknownFirmicutesClostridium98.1994.1684.77
13|CP019066.1428494.1430021864726unknownunknownActinobacteriaBifidobacterium99.5192.6584.43
13|CP019066.1428494.1430021943064unknownunknownActinobacteriaAtopobium99.6594.0784.04
1|AE001437.168613.170132928676unknownunknownFirmicutesAnaerofustis98.1294.1683.99
1|AE001437.168613.170132952897unknownunknownFirmicutesRuminococcus97.2893.3184.01
0|CP000282.3213358.3214883933546unknownunknownProteobacteriaSuccinatimonas97.4692.3683.9
16|CP017141.1132021.1133550919121unknownunknownBacteroidetesAlistipes100.090.9683.93
1|AE001437.168613.170132909967unknownunknownFirmicutesunknown97.6393.7583.65
1|AE001437.168613.170132948040unknownunknownFirmicutesEubacterium97.1493.1983.32
1|AE001437.168613.170132923885unknownunknownFirmicutesButyrivibrio98.1294.1882.99
1|AE001437.168613.170132962644unknownunknownFirmicutesunknown98.1296.0382.76
0|CP000282.3213358.3214883882598unknownunknownProteobacteriaDesulfovibrio100.095.7782.15
1|AE001437.168613.170132882599unknownunknownFirmicutesGranulicatella98.1294.2882.48
13|CP019066.1428494.1430021948025unknownunknownActinobacteriaEggerthella99.6593.9982.36
0|CP000282.3213358.3214883882548unknownunknownProteobacteriaBilophila100.095.7881.8
1|AE001437.168613.170132909970unknownunknownFirmicutesClostridium97.6393.7582.35
1|AE001437.168613.170132943183unknownunknownFirmicutesFaecalibacterium96.392.3982.19
1|AE001437.168613.1701321047730unknownunknownFirmicutesOribacterium91.5690.9782.73
13|CP019066.1428494.1430021909972unknownunknownFirmicutesunknown99.6594.2181.11
13|CP019066.1428494.1430021948165unknownunknownActinobacteriaCollinsella96.8491.4481.31
1|AE001437.168613.170132868909unknownunknownFirmicutesGemella97.1493.3480.88
1|AE001437.168613.1701321041798unknownunknownFirmicutesAnaerococcus92.691.6181.49
13|CP019066.1428494.1430021905337unknownunknownFirmicutesClostridium99.6594.0980.62
13|CP019066.1428494.1430021909969unknownunknownFirmicutesDorea99.6594.2180.5
0|CP000282.3213358.32148831076271unknownunknownFirmicutesEubacterium96.7797.3380.65
0|CP000282.3213358.3214883868799unknownunknownFirmicutesStreptococcus96.7191.3480.39
0|CP000282.3213358.3214883824698unknownunknownFirmicutesLactobacillus97.4690.4580.21
1|AE001437.168613.170132856179unknownunknownFirmicutesStreptococcus98.3393.3180.34
1|AE001437.168613.170132856177unknownunknownFirmicutesLactococcus97.3592.2980.51
0|CP000282.3213358.3214883821203unknownunknownFirmicutesWeissella97.4690.0380.3
0|CP000282.3213358.3214883919228unknownunknownFirmicutesAnaerotruncus97.0591.4780.56
13|CP019066.1428494.1430021909876unknownunknownFirmicutesRuminococcus99.6594.2180.19
0|CP000282.3213358.3214883844088unknownunknownFirmicutesLactobacillus97.4691.3180.17
0|CP000282.3213358.3214883887138unknownunknownFirmicutesRoseburia96.7790.2980.51
13|CP019066.1428494.1430021905338unknownunknownFirmicutesAnaerostipes99.6594.2280.06
13|CP019066.1428494.1430021909879unknownunknownFirmicutesunknown99.6594.2180.03
1|AE001437.168613.170132919126unknownunknownFirmicutesunknown97.5693.6680.13
1|AE001437.168613.170132882554unknownunknownFirmicutesLeuconostoc96.0992.3380.26
0|CP000282.3213358.3214883909790unknownunknownFirmicutesunknown96.7791.0680.17
0|CP000282.3213358.3214883909968unknownunknownFirmicutesunknown96.7791.1880.15
16|CP017141.1132021.11335501118861unknownunknownBacteroidetesPrevotella92.4691.0980.47
14|CP000527.3172152.31736931477250unknownunknownFirmicutesHoldemania91.0692.6980.13
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumBacteroidetes-0.7590.00.0
classBacteroidia-0.7590.00.0
orderBacteroidales-0.7590.00.0
orderClostridiales0.652.01e-2251.91e-223
classClostridia0.652.02e-2251.91e-223
phylumFirmicutes0.6427.3e-2185.74e-216
familyRuminococcaceae0.5813.29e-1692.22e-167
phylumActinobacteria0.5815.13e-1692.69e-167
classActinobacteria0.5815.13e-1692.69e-167
speciesRuminococcus_obeum0.5715.16e-1622.44e-160
orderCoriobacteriales0.5592.18e-1548.57e-153
familyCoriobacteriaceae0.5592.18e-1548.57e-153
familyLachnospiraceae0.5526.46e-1502.35e-148
genusDorea0.512.87e-1249.68e-123
speciesEubacterium_hallii0.5031.82e-1205.73e-119
familyBacteroidaceae-0.4981.36e-1173.78e-116
genusBacteroides-0.4981.36e-1173.78e-116
speciesRuminococcus_sp_5_1_39BFAA0.4841.6e-1104.2e-109
genusRuminococcus0.4843.01e-1107.48e-109
orderBifidobacteriales0.4798.96e-1082.01e-106
familyBifidobacteriaceae0.4798.96e-1082.01e-106
genusBifidobacterium0.4759.73e-1062.09e-104
speciesDorea_formicigenerans0.4637.44e-1001.53e-98
speciesLachnospiraceae_bacterium_5_1_63FAA0.4552.17e-964.27e-95
speciesAnaerostipes_hadrus0.4524.99e-959.42e-94
genusBlautia0.4526.37e-951.16e-93
speciesBifidobacterium_longum0.4284.89e-848.55e-83
speciesDorea_longicatena0.4241.32e-822.2e-81
familyActinomycetaceae0.4241.35e-822.2e-81
genusActinomyces0.4234.11e-826.47e-81
genusAnaerostipes0.4172.21e-793.36e-78
classBacilli0.4142.67e-783.94e-77
speciesCoprococcus_comes0.4121.09e-771.56e-76
orderLactobacillales0.4121.69e-772.35e-76
orderActinomycetales0.4112.5e-773.37e-76
genusParabacteroides-0.411.08e-761.42e-75
familyStreptococcaceae0.4088.82e-761.13e-74
genusCoprococcus0.4043.68e-744.57e-73
genusStreptococcus0.4021.21e-731.46e-72
speciesCoprococcus_catus0.3927.34e-708.66e-69
speciesRuminococcus_torques0.3871.02e-671.17e-66
genusAdlercreutzia0.3841.06e-661.16e-65
speciesAdlercreutzia_equolifaciens0.3841.06e-661.16e-65
speciesEubacterium_ramulus0.3661.75e-601.88e-59
genusCollinsella0.3632.08e-592.18e-58
genusLachnospiraceae_noname0.3611.2e-581.23e-57
speciesCollinsella_aerofaciens0.362.24e-582.25e-57
familyPorphyromonadaceae-0.3596.6e-586.49e-57
genusFaecalibacterium0.3461.11e-531.05e-52
speciesFaecalibacterium_prausnitzii0.3461.11e-531.05e-52
speciesStreptococcus_salivarius0.3422.11e-521.95e-51
genusGordonibacter0.3379.1e-518.1e-50
speciesGordonibacter_pamelaeae0.3379.1e-518.1e-50
speciesStreptococcus_sanguinis0.3344.06e-503.55e-49
speciesStreptococcus_thermophilus0.3322.55e-492.19e-48
speciesStreptococcus_parasanguinis0.3222.19e-461.85e-45
genusSolobacterium0.3175.32e-454.33e-44
speciesSolobacterium_moorei0.3175.32e-454.33e-44
familyBacillales_noname0.315.26e-434.14e-42
genusGemella0.315.26e-434.14e-42
speciesBacteroides_thetaiotaomicron-0.3042.37e-411.83e-40
familyEubacteriaceae0.3034.62e-413.52e-40
genusEubacterium0.3036.11e-414.58e-40
orderBacillales0.3029.55e-417.04e-40
speciesEggerthella_lenta0.2981.32e-399.59e-39
classBetaproteobacteria-0.2892.21e-371.58e-36
speciesBacteroides_ovatus-0.2892.48e-371.75e-36
orderBurkholderiales-0.2861.53e-361.06e-35
familySutterellaceae-0.2853.48e-362.38e-35
speciesBacteroides_xylanisolvens-0.2846.26e-364.22e-35
speciesBifidobacterium_adolescentis0.2831.05e-356.98e-35
genusSubdoligranulum0.2812.31e-351.51e-34
speciesSubdoligranulum_unclassified0.284.4e-352.84e-34
genusRothia0.286.14e-353.92e-34
familyMicrococcaceae0.2799.1e-355.73e-34
speciesRothia_mucilaginosa0.2764.52e-342.81e-33
genusPrevotella-0.2661.16e-317.11e-31
familyPeptostreptococcaceae0.2643.34e-312.02e-30
speciesRuminococcus_bromii0.2643.59e-312.14e-30
genusEggerthella0.2596.13e-303.62e-29
genusPeptostreptococcaceae_noname0.2554.82e-292.81e-28
speciesBacteroides_vulgatus-0.2539.31e-295.36e-28
familyLactobacillaceae0.2513.2e-281.82e-27
familyPrevotellaceae-0.2448.26e-274.64e-26
genusLactobacillus0.2449.07e-275.04e-26
speciesPrevotella_copri-0.2431.73e-269.49e-26
speciesStreptococcus_australis0.2414.47e-262.43e-25
speciesStreptococcus_vestibularis0.247.75e-264.16e-25
speciesEggerthella_unclassified0.2372.34e-251.24e-24
speciesStreptococcus_gordonii0.237.48e-243.92e-23
speciesClostridium_leptum0.2291.13e-235.86e-23
speciesStreptococcus_mitis_oralis_pneumoniae0.2291.24e-236.36e-23
speciesErysipelotrichaceae_bacterium_21_30.2281.58e-238.02e-23
speciesOdoribacter_splanchnicus-0.2255.95e-232.99e-22
genusOdoribacter-0.2222.15e-221.07e-21
speciesBacteroides_stercoris-0.2223.17e-221.56e-21
classErysipelotrichia0.2213.59e-221.71e-21
orderErysipelotrichales0.2213.59e-221.71e-21
familyErysipelotrichaceae0.2213.59e-221.71e-21
genusEnterococcus0.2181.25e-215.9e-21
speciesLactobacillus_rhamnosus0.2181.61e-217.52e-21
speciesStreptococcus_mutans0.2172.07e-219.58e-21
familyEnterococcaceae0.2172.55e-211.17e-20
genusOlsenella0.2147.27e-213.3e-20
genusPropionibacterium0.2112.42e-201.09e-19
genusLeuconostoc0.2112.94e-201.31e-19
speciesStreptococcus_anginosus0.2097.45e-203.29e-19
speciesBifidobacterium_catenulatum0.2088.9e-203.89e-19
speciesBifidobacterium_dentium0.2071.86e-198.05e-19
speciesPropionibacterium_freudenreichii0.2062.3e-199.87e-19
genusLactococcus0.2011.4e-185.95e-18
speciesLactococcus_lactis0.1976.74e-182.84e-17
speciesLactobacillus_delbrueckii0.1978.12e-183.39e-17
speciesClostridium_bartlettii0.1961.26e-175.22e-17
speciesLactobacillus_casei_paracasei0.1933.87e-171.59e-16
speciesEnterococcus_faecium0.191.02e-164.15e-16
speciesEubacterium_rectale0.191.16e-164.68e-16
speciesOlsenella_unclassified0.1891.8e-167.2e-16
speciesBifidobacterium_animalis0.1857.23e-162.87e-15
speciesParabacteroides_merdae-0.1857.98e-163.14e-15
speciesPrevotella_stercorea-0.1858.58e-163.35e-15
familyLeuconostocaceae0.1821.91e-157.39e-15
genusPeptostreptococcus0.1781.05e-144.03e-14
speciesParabacteroides_distasonis-0.1735.64e-142.15e-13
speciesRuminococcus_sp_JC3040.1735.69e-142.15e-13
speciesTuricibacter_sanguinis0.1725.94e-142.23e-13
familyClostridiales_Family_XI_Incertae_Sedis0.1727.64e-142.84e-13
speciesEubacterium_ventriosum0.1718.56e-143.16e-13
speciesBacteroides_plebeius-0.1719.57e-143.5e-13
speciesBlautia_hydrogenotrophica0.1711.13e-134.1e-13
genusTuricibacter0.171.57e-135.66e-13
genusHoldemania0.1692.07e-137.4e-13
speciesLachnospiraceae_bacterium_3_1_46FAA0.1673.2e-131.14e-12
speciesBacteroides_caccae-0.1665.21e-131.84e-12
speciesErysipelotrichaceae_bacterium_6_1_450.1656e-132.1e-12
speciesErysipelotrichaceae_bacterium_2_2_44A0.1631.55e-125.37e-12
genusErysipelotrichaceae_noname0.1621.56e-125.37e-12
speciesPeptostreptococcaceae_noname_unclassified0.1621.85e-126.33e-12
speciesBacteroides_uniformis-0.1612.81e-129.21e-12
phylumVerrucomicrobia0.1612.83e-129.21e-12
classVerrucomicrobiae0.1612.83e-129.21e-12
orderVerrucomicrobiales0.1612.83e-129.21e-12
familyVerrucomicrobiaceae0.1612.83e-129.21e-12
genusAkkermansia0.1612.83e-129.21e-12
speciesAkkermansia_muciniphila0.1612.83e-129.21e-12
speciesEubacterium_siraeum0.163.43e-121.11e-11
speciesTuricibacter_unclassified0.1579.22e-122.96e-11
speciesGemella_morbillorum0.1579.7e-123.09e-11
speciesMegamonas_unclassified-0.1551.76e-115.58e-11
genusMegamonas-0.1542.04e-116.42e-11
speciesMegamonas_rupellensis-0.1542.27e-117.1e-11
speciesLachnospiraceae_bacterium_1_1_57FAA0.1515.7e-111.77e-10
phylumFusobacteria-0.1515.93e-111.81e-10
classFusobacteriia-0.1515.93e-111.81e-10
orderFusobacteriales-0.1515.93e-111.81e-10
speciesLactobacillus_plantarum0.156.78e-112.05e-10
speciesFusobacterium_ulcerans-0.157.02e-112.11e-10
familyPropionibacteriaceae0.158.04e-112.4e-10
speciesRuminococcus_lactaris0.1491.02e-103.03e-10
speciesEggerthella_sp_1_3_56FAA0.1481.23e-103.63e-10
speciesEnterococcus_faecalis0.1462.34e-106.86e-10
speciesFusobacterium_mortiferum-0.1462.41e-107.02e-10
familyFusobacteriaceae-0.1453.26e-109.44e-10
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1444.52e-101.3e-09
genusFusobacterium-0.1435.07e-101.45e-09
genusParvimonas0.1418.01e-102.27e-09
speciesParvimonas_unclassified0.1418.04e-102.27e-09
genusMethanobrevibacter0.1382.2e-096.18e-09
speciesDorea_unclassified-0.1372.58e-097.21e-09
familyRikenellaceae-0.1372.81e-097.76e-09
genusAlistipes-0.1372.81e-097.76e-09
speciesBacteroides_faecis-0.1363.09e-098.48e-09
genusButyricimonas-0.1363.38e-099.17e-09
speciesButyricimonas_synergistica-0.1363.38e-099.17e-09
speciesBacteroides_nordii-0.1363.4e-099.17e-09
speciesMegamonas_hypermegale-0.1354.74e-091.26e-08
speciesParabacteroides_unclassified-0.1354.74e-091.26e-08
speciesLactobacillus_gasseri0.1354.88e-091.29e-08
speciesMethanobrevibacter_smithii0.1355.25e-091.38e-08
classMethanobacteria0.1346.82e-091.77e-08
orderMethanobacteriales0.1346.82e-091.77e-08
familyMethanobacteriaceae0.1346.82e-091.77e-08
genusDialister0.1337.42e-091.91e-08
speciesDialister_invisus0.1338.22e-092.11e-08
speciesLactobacillus_fermentum0.1311.36e-083.47e-08
phylumEuryarchaeota0.1311.43e-083.63e-08
speciesHoldemania_filiformis0.131.55e-083.91e-08
speciesBacteroides_massiliensis-0.1282.85e-087.16e-08
genusSutterellaceae_unclassified-0.1273.74e-089.34e-08
speciesAlistipes_shahii-0.1238.45e-082.1e-07
genusPseudoflavonifractor0.1239.14e-082.25e-07
speciesPseudoflavonifractor_capillosus0.1239.14e-082.25e-07
genusSiphoviridae_noname0.1239.46e-082.31e-07
speciesLachnospiraceae_bacterium_1_4_56FAA0.1231.05e-072.55e-07
speciesMegamonas_funiformis-0.1221.16e-072.81e-07
speciesBacteroides_finegoldii-0.1211.44e-073.47e-07
speciesParabacteroides_goldsteinii-0.1211.58e-073.79e-07
speciesBifidobacterium_bifidum0.1182.88e-076.85e-07
speciesBacteroides_fragilis-0.1182.89e-076.85e-07
genusRoseburia0.1173.74e-078.83e-07
speciesPeptostreptococcus_stomatis0.1164.75e-071.12e-06
speciesFusobacterium_varium-0.1155.82e-071.36e-06
genusFlavonifractor-0.1155.89e-071.36e-06
speciesFlavonifractor_plautii-0.1155.89e-071.36e-06
speciesOscillibacter_sp_KLE_1728-0.1131.05e-062.42e-06
familyOscillospiraceae-0.1121.21e-062.76e-06
genusOscillibacter-0.1121.21e-062.76e-06
speciesRoseburia_hominis0.111.94e-064.4e-06
speciesBacteroides_dorei-0.1092.53e-065.71e-06
genusParasutterella-0.1082.87e-066.42e-06
speciesParasutterella_excrementihominis-0.1082.87e-066.42e-06
speciesPeptostreptococcus_anaerobius0.1064.7e-061.05e-05
speciesLactococcus_phage_P6800.1055.19e-061.15e-05
speciesBlautia_producta0.1055.26e-061.16e-05
speciesHoldemania_unclassified0.1046.01e-061.32e-05
speciesEubacterium_cylindroides0.1046.94e-061.52e-05
speciesBilophila_unclassified-0.1037.41e-061.61e-05
orderPseudomonadales0.1037.91e-061.71e-05
genusBilophila-0.1011.15e-052.48e-05
speciesSubdoligranulum_sp_4_3_54A2FAA0.11.48e-053.16e-05
speciesEscherichia_unclassified0.11.48e-053.16e-05
genusButyrivibrio0.0982.11e-054.49e-05
classDeltaproteobacteria-0.0982.22e-054.66e-05
orderDesulfovibrionales-0.0982.22e-054.66e-05
familyDesulfovibrionaceae-0.0982.22e-054.66e-05
speciesRoseburia_intestinalis0.0972.8e-055.85e-05
speciesAlistipes_putredinis-0.0963.02e-056.28e-05
speciesPrevotella_buccae-0.0963.08e-056.38e-05
speciesAnaerotruncus_unclassified0.0963.15e-056.49e-05
speciesOscillibacter_unclassified-0.0963.26e-056.69e-05
speciesBacteroides_coprocola-0.0954.19e-058.56e-05
speciesClostridium_nexile-0.0944.43e-059.01e-05
phylumViruses_noname0.0944.92e-059.92e-05
classViruses_noname0.0944.92e-059.92e-05
genusSutterella-0.0927.03e-050.000141
speciesBifidobacterium_breve0.0918.19e-050.000164
speciesAnaerostipes_unclassified-0.099.71e-050.000193
genusHaemophilus-0.099.81e-050.000195
speciesLactobacillus_acidophilus0.090.0001010.000199
speciesHaemophilus_parainfluenzae-0.090.0001040.000205
orderPasteurellales-0.090.0001060.000207
familyPasteurellaceae-0.090.0001060.000207
speciesWeissella_cibaria0.0890.0001180.000229
speciesClostridium_spiroforme0.0880.0001380.000267
genusStaphylococcus0.0870.0001730.000333
speciesMethanobrevibacter_unclassified0.0860.0001890.000363
speciesClostridiales_bacterium_1_7_47FAA-0.0850.0002450.000468
speciesSutterella_wadsworthensis-0.0840.0002630.000501
familyStaphylococcaceae0.0840.0002850.00054
genusCoprobacillus0.0830.0003180.000597
classNegativicutes-0.0830.0003190.000597
orderSelenomonadales-0.0830.0003190.000597
speciesClostridium_ramosum0.0830.0003270.00061
speciesBifidobacterium_pseudocatenulatum0.0820.0003830.000712
genusAnaerotruncus0.0820.0004010.000742
speciesCoprococcus_sp_ART55_10.0820.0004030.000743
speciesBacteroides_salyersiae-0.080.000550.00101
speciesKlebsiella_oxytoca0.0790.0006230.00114
speciesCoprobacillus_unclassified0.0780.0006810.00124
speciesBacteroides_intestinalis-0.0770.0008950.00162
speciesKlebsiella_pneumoniae-0.0770.0009210.00167
genusMegasphaera-0.0760.0009470.00171
familyBurkholderiales_noname-0.0760.0009560.00172
speciesParaprevotella_xylaniphila-0.0760.0009750.00174
familySiphoviridae0.0760.001020.00182
phylumProteobacteria-0.0760.001050.00186
speciesMitsuokella_unclassified0.0760.001080.00191
speciesParabacteroides_johnsonii-0.0750.001110.00195
speciesLachnospiraceae_bacterium_5_1_57FAA0.0740.001290.00226
genusBurkholderiales_noname-0.0740.00130.00226
speciesBurkholderiales_bacterium_1_1_47-0.0740.00130.00226
speciesLactobacillus_vaginalis0.0730.001490.00259
genusRuminococcaceae_noname0.0720.001750.00301
speciesRuminococcaceae_bacterium_D160.0720.001750.00301
speciesAlistipes_indistinctus-0.0720.001770.00304
speciesButyrivibrio_crossotus0.0720.001820.00311
genusMitsuokella0.0720.001860.00316
speciesLactobacillus_sanfranciscensis0.0720.001860.00316
speciesBacteroides_cellulosilyticus-0.0720.001880.00318
speciesMegasphaera_unclassified-0.070.002320.00391
speciesRuminococcus_callidus0.0690.002680.0045
speciesLeuconostoc_lactis0.0690.002750.0046
speciesLactobacillus_amylovorus0.0690.002810.00469
speciesCoprococcus_eutactus0.0680.003230.00537
speciesOscillibacter_sp_KLE_1745-0.0680.003310.00548
speciesBacteroides_oleiciplenus-0.0660.004360.0072
orderViruses_noname0.0650.004720.00776
orderCaudovirales0.0650.004790.00785
speciesErysipelotrichaceae_bacterium_3_1_530.0650.005050.00825
speciesLactobacillus_oris0.0650.005210.00848
speciesBilophila_wadsworthia-0.0640.005340.00866
speciesLactococcus_garvieae0.0640.00570.00921
genusWeissella0.0640.006010.00968
speciesEubacterium_limosum0.0610.008340.0134
speciesBacteroides_pectinophilus0.0610.008710.0139
speciesDesulfovibrio_desulfuricans-0.060.008910.0142
speciesClostridium_sp_ATCC_BAA_442-0.060.009290.0148
speciesBacteroides_sp_2_1_22-0.0590.01070.0169
speciesLactococcus_phage_jm20.0590.01110.0175
familyClostridiales_noname-0.0580.01180.0185
speciesBacteroides_coprophilus-0.0580.01180.0185
genusCoriobacteriaceae_noname0.0580.01240.0194
speciesBacteroides_eggerthii-0.0570.0140.0218
genusBarnesiella0.0560.01490.023
speciesAlistipes_finegoldii-0.0560.01490.023
speciesBarnesiella_intestinihominis0.0560.01490.023
speciesLactobacillus_reuteri0.0560.01510.0232
speciesOdoribacter_laneus0.0560.01590.0244
speciesCoriobacteriaceae_bacterium_phI0.0550.01680.0257
speciesButyrivibrio_unclassified0.0550.0170.0259
speciesClostridium_perfringens0.0530.02190.0332
speciesCollinsella_unclassified-0.0520.02470.0374
speciesClostridium_bolteae-0.0520.02510.0379
speciesBacteroides_clarus-0.0520.02530.038
genusPorphyromonas0.0520.02570.0384
speciesAlistipes_unclassified0.0520.02570.0384
genusClostridiales_noname-0.050.02950.0439
speciesStreptococcus_phage_Sfi210.050.02970.0441
speciesClostridium_citroniae-0.050.0320.0473
speciesMitsuokella_multacida-0.0490.03330.0491
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0490.03370.0496
orderEnterobacteriales0.0470.04010.0586
familyEnterobacteriaceae0.0470.04010.0586
speciesAcidaminococcus_fermentans-0.0470.04350.0634
genusEscherichia0.0460.04590.0667
speciesLachnospiraceae_bacterium_2_1_58FAA0.0460.04610.0667
classEpsilonproteobacteria-0.0460.04720.0679
orderCampylobacterales-0.0460.04720.0679
familyVeillonellaceae-0.0460.04750.0681
genusLambdalikevirus0.0450.05320.0761
genusKlebsiella-0.0440.05490.0783
speciesLactobacillus_crispatus0.0440.05920.0839
speciesClostridium_sp_L2_500.0440.05940.0839
familyBacteroidales_noname0.0440.05970.0839
genusBacteroidales_noname0.0440.05970.0839
speciesBacteroidales_bacterium_ph80.0440.05970.0839
speciesRoseburia_inulinivorans0.0430.06060.0849
genusPeptoniphilus0.0430.06530.0912
speciesAnaerotruncus_colihominis0.0420.06990.0973
speciesPorphyromonas_asaccharolytica0.0410.07490.104
speciesWeissella_confusa0.0410.07590.105
speciesBacteroides_sp_1_1_6-0.040.08150.112
speciesAlistipes_sp_AP110.040.08350.115
genusCampylobacter-0.040.08640.118
speciesClostridium_symbiosum-0.040.08650.118
speciesCitrobacter_unclassified0.0380.09820.134
genusAcidaminococcaceae_unclassified-0.0380.1010.137
speciesEscherichia_coli0.0380.1010.137
genusMethanosphaera0.0380.1020.138
speciesMethanosphaera_stadtmanae0.0380.1020.138
genusClostridium0.0380.1030.139
speciesCollinsella_tanakaei-0.0370.1050.141
familyCampylobacteraceae-0.0370.1060.142
genusDesulfovibrio-0.0370.1130.151
genusButyricicoccus0.0360.1190.158
speciesButyricicoccus_pullicaecorum0.0360.1190.158
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0360.1230.163
familyClostridiaceae0.0350.1270.167
speciesParaprevotella_clara-0.0350.1330.175
familyAcidaminococcaceae-0.0340.1440.189
genusParaprevotella-0.0340.1460.191
speciesCitrobacter_freundii0.0340.1470.192
genusPantoea0.0330.1570.204
speciesPantoea_unclassified0.0330.1570.204
phylumSynergistetes-0.0320.1610.206
classSynergistia-0.0320.1610.206
orderSynergistales-0.0320.1610.206
familySynergistaceae-0.0320.1610.206
speciesAlistipes_sp_HGB5-0.0320.1690.216
speciesParaprevotella_unclassified-0.0320.170.217
genusProteus0.0310.1740.221
genusCitrobacter0.0310.1740.221
speciesKlebsiella_sp_MS_92_30.0310.1760.223
speciesLactobacillus_ruminis-0.0310.1820.23
speciesBacteroides_barnesiae-0.0310.1870.235
speciesStreptococcus_pasteurianus-0.030.1960.246
speciesAcidaminococcus_intestini-0.0290.2020.253
speciesDialister_succinatiphilus0.0290.2030.253
speciesPorphyromonas_uenonis0.0290.2090.26
genusPyramidobacter-0.0270.2350.291
speciesPyramidobacter_piscolens-0.0270.2350.291
speciesCampylobacter_concisus-0.0270.2420.298
speciesEubacterium_biforme0.0270.2420.298
speciesCoprobacillus_sp_D60.0270.250.307
speciesAggregatibacter_segnis-0.0260.2540.311
speciesLactococcus_phage_phi70.0260.2590.317
speciesRuminococcus_champanellensis0.0260.2610.318
genusVeillonella0.0260.270.328
speciesVeillonella_dispar-0.0250.2770.336
speciesSutterella_parvirubra-0.0250.2810.34
speciesBifidobacterium_angulatum0.0250.2850.344
genusSuccinatimonas-0.0240.2920.351
speciesSuccinatimonas_hippei-0.0240.2920.351
speciesEnterobacteria_phage_HK5440.0230.3120.374
classGammaproteobacteria0.0230.3140.375
genusSlackia0.0230.3150.375
speciesBacteroides_fluxus-0.0230.3260.388
speciesClostridium_clostridioforme-0.0230.3270.388
genusOxalobacter-0.0230.330.389
speciesOxalobacter_formigenes-0.0230.330.389
genusMyoviridae_noname0.0220.3310.39
speciesVeillonella_unclassified0.0220.3330.391
genusClostridiaceae_noname-0.0220.340.397
speciesClostridiaceae_bacterium_JC118-0.0220.340.397
genusAcidaminococcus-0.0220.3420.399
speciesMegasphaera_micronuciformis-0.0220.3470.403
speciesDesulfovibrio_piger-0.0220.3480.404
speciesHaemophilus_sputorum0.0210.3580.414
genusAggregatibacter-0.0210.3690.426
speciesVeillonella_parvula0.0210.3720.428
familySuccinivibrionaceae-0.020.380.436
familyPodoviridae-0.020.3820.438
familyOxalobacteraceae-0.020.3980.455
speciesBacteroides_sp_3_1_19-0.0190.4130.471
orderAeromonadales-0.0180.4240.482
speciesCollinsella_intestinalis-0.0180.4410.5
genusActinobacillus-0.0180.4440.501
speciesActinobacillus_unclassified-0.0180.4440.501
speciesStreptococcus_lutetiensis0.0170.4610.519
speciesLactococcus_phage_bIL670.0170.4620.519
speciesFusobacterium_nucleatum0.0170.4670.524
genusEnterobacter-0.0170.4730.529
speciesEubacterium_sp_3_1_310.0160.4770.532
speciesLachnospiraceae_bacterium_8_1_57FAA0.0160.4890.544
speciesEnterobacter_cloacae-0.0160.50.555
speciesClostridium_sp_KLE_17550.0150.5230.579
familyViruses_noname0.0140.5430.599
genusViruses_noname0.0140.5430.599
speciesKlebsiella_unclassified0.0140.5540.61
speciesSlackia_piriformis0.0130.560.615
speciesPrevotella_bivia-0.0130.5650.619
speciesLachnospiraceae_bacterium_7_1_58FAA0.0130.5730.626
speciesMegasphaera_elsdenii-0.0130.5770.629
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0130.5880.639
speciesEubacterium_eligens0.0110.6230.676
speciesVeillonella_atypica0.0110.6310.683
speciesProteus_mirabilis0.0110.6320.683
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0110.6370.686
genusC2likevirus0.0110.6390.687
speciesParabacteroides_sp_D13-0.0110.6450.692
speciesEubacterium_dolichum-0.010.6580.704
speciesRoseburia_unclassified0.010.6650.71
speciesClostridium_asparagiforme0.010.6740.718
familyMyoviridae0.0090.7090.752
speciesC2likevirus_unclassified0.0090.7090.752
genusCoprobacter-0.0080.7290.77
speciesCoprobacter_fastidiosus-0.0080.7290.77
speciesAlistipes_onderdonkii-0.0080.7390.779
speciesAlistipes_senegalensis-0.0080.7420.78
speciesBacteroides_salanitronis-0.0070.7520.789
speciesStreptococcus_infantarius-0.0060.7840.821
speciesKlebsiella_phage_KP36-0.0060.7970.832
speciesClostridium_hathewayi0.0060.8110.845
speciesHoldemania_sp_AP20.0050.8350.868
genusPhascolarctobacterium-0.0050.840.869
speciesPhascolarctobacterium_succinatutens-0.0050.840.869
speciesParabacteroides_sp_20_30.0050.8420.87
genusCatenibacterium-0.0040.8460.87
speciesCatenibacterium_mitsuokai-0.0040.8460.87
speciesLactobacillus_mucosae0.0040.8490.871
speciesHaemophilus_paraphrohaemolyticus-0.0040.8640.885
genusMorganella-0.0040.8730.888
genusTunalikevirus0.0040.8730.888
speciesMorganella_morganii-0.0040.8730.888
speciesLactobacillus_salivarius0.0030.8960.909
speciesEnterobacter_aerogenes-0.0030.9040.916
speciesOdoribacter_unclassified-0.0030.9130.923
speciesAcidaminococcus_unclassified0.0010.9550.963
speciesCoprobacillus_sp_29_1-0.0010.9660.972
speciesLactococcus_phage_936_sensu_lato-0.0010.9770.981
speciesRuminococcus_gnavus0.00.9960.998
speciesBacteroides_sp_4_3_47FAA0.01.01.0
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Rheumatoid arthritisChina127981.577527496341.42767073570.022898198623618626.20936
Ulcerative colitisSpain78661.423768650991.294322022650.0382543022325415413.7032
Colorectal cancerAustria64352.431907796052.792967170380.109763677548540918.3009
Crohns diseaseSpain17661.216971104851.294322022650.1924804103211660855.2219
Type II diabetesDenmark752771.295927419561.267865440980.3870568927371789258.6488
ObesityDenmark1691231.255305795251.298134089680.571374960062104769.2085
Type II diabetesSweden53921.924583443551.905209829930.8282725797042498784.6156
Liver cirrhosisChina1201141.06926572491.041765856690.8834267744142842295.4752
Type II diabetesChina1831851.246731876071.270020451050.9015083414292847694.1075
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382