MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-25 13:53:03 PST
Job id & description: 2137, pfiT
Query type: protein
Count queries & homologs: 1, 1
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 25%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tr|Q4K8Z8|Q4K8Z8_PSEF53914927CompleteK09017COG1309unknownunknown73.9175.1130.56
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesClostridium_hathewayi0.5814.21e-1691.99e-166
speciesClostridium_symbiosum0.4451.41e-913.33e-89
speciesClostridium_bolteae0.4051.02e-741.6e-72
speciesClostridiales_bacterium_1_7_47FAA0.4036.39e-747.54e-72
genusCoprobacillus0.3491.08e-541.02e-52
speciesClostridium_citroniae0.3413.69e-522.9e-50
genusClostridiales_noname0.3361.33e-508.97e-49
familyClostridiaceae0.321.01e-455.96e-44
speciesCoprobacillus_unclassified0.3191.47e-457.71e-44
genusClostridium0.3183.18e-451.5e-43
genusFlavonifractor0.3143.42e-441.35e-42
speciesFlavonifractor_plautii0.3143.42e-441.35e-42
speciesClostridium_clostridioforme0.3112.4e-438.71e-42
familyClostridiales_noname0.3011.42e-404.79e-39
speciesEggerthella_unclassified0.2988.96e-402.82e-38
genusEggerthella0.2971.63e-394.81e-38
speciesRuminococcus_gnavus0.2923.79e-381.05e-36
speciesClostridium_ramosum0.2918.08e-382.12e-36
speciesClostridium_asparagiforme0.2911.02e-372.53e-36
speciesAnaerostipes_unclassified0.2861.33e-363.14e-35
speciesClostridium_nexile0.2751.04e-332.34e-32
speciesAnaerotruncus_colihominis0.2661.21e-312.6e-30
speciesLachnospiraceae_bacterium_5_1_57FAA0.2571.13e-292.32e-28
speciesFusobacterium_ulcerans0.2456.48e-271.27e-25
speciesBlautia_producta0.2431.47e-262.78e-25
genusCoprococcus-0.2341.39e-242.52e-23
speciesEscherichia_coli0.2291.31e-232.29e-22
genusEscherichia0.2231.8e-223.03e-21
speciesCoprococcus_comes-0.2146.94e-211.13e-19
speciesCollinsella_aerofaciens-0.2131.14e-201.79e-19
familyBacteroidaceae0.2113.52e-205.19e-19
genusBacteroides0.2113.52e-205.19e-19
phylumFusobacteria0.2039.01e-191.22e-17
classFusobacteriia0.2039.01e-191.22e-17
orderFusobacteriales0.2039.01e-191.22e-17
orderEnterobacteriales0.22.95e-183.76e-17
familyEnterobacteriaceae0.22.95e-183.76e-17
familyFusobacteriaceae0.1993.11e-183.86e-17
genusFusobacterium0.1984.57e-185.53e-17
speciesBacteroides_fragilis0.1985.67e-186.69e-17
speciesEggerthella_lenta0.1977.79e-188.97e-17
speciesEubacterium_ramulus-0.1978.4e-189.44e-17
speciesEubacterium_siraeum-0.1961.21e-171.33e-16
speciesDorea_longicatena-0.1933.99e-174.28e-16
speciesEubacterium_rectale-0.1926.02e-176.31e-16
genusCollinsella-0.1891.49e-161.53e-15
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1891.71e-161.72e-15
speciesCoprococcus_catus-0.1873.52e-163.46e-15
speciesBacteroides_thetaiotaomicron0.1841.19e-151.15e-14
familyEubacteriaceae-0.1813.63e-153.32e-14
genusEubacterium-0.1813.63e-153.32e-14
classGammaproteobacteria0.1813.66e-153.32e-14
speciesLachnospiraceae_bacterium_1_4_56FAA0.183.97e-153.54e-14
speciesLachnospiraceae_bacterium_6_1_63FAA0.1743.07e-142.68e-13
genusClostridiaceae_noname0.1734.76e-144.01e-13
speciesClostridiaceae_bacterium_JC1180.1734.76e-144.01e-13
speciesEubacterium_biforme-0.1727.67e-146.35e-13
speciesSubdoligranulum_sp_4_3_54A2FAA0.1711.02e-138.3e-13
genusDorea-0.1691.66e-131.33e-12
speciesErysipelotrichaceae_bacterium_6_1_450.1691.91e-131.5e-12
speciesErysipelotrichaceae_bacterium_2_2_44A0.1691.97e-131.52e-12
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1673.25e-132.47e-12
speciesBifidobacterium_adolescentis-0.1631.46e-121.09e-11
speciesFusobacterium_varium0.1621.97e-121.45e-11
speciesClostridium_sp_ATCC_BAA_4420.1612.32e-121.68e-11
speciesSutterella_wadsworthensis-0.1586.88e-124.92e-11
speciesSubdoligranulum_unclassified-0.1578.72e-126.14e-11
familyRuminococcaceae-0.1579.96e-126.91e-11
genusButyrivibrio-0.1551.4e-119.58e-11
phylumFirmicutes-0.1523.67e-112.47e-10
genusHoldemania0.1515.19e-113.45e-10
genusMethanobrevibacter-0.156.27e-114.11e-10
classMethanobacteria-0.1481.17e-107.36e-10
orderMethanobacteriales-0.1481.17e-107.36e-10
familyMethanobacteriaceae-0.1481.17e-107.36e-10
speciesMethanobrevibacter_smithii-0.1481.21e-107.51e-10
phylumEuryarchaeota-0.1462.48e-101.52e-09
genusSubdoligranulum-0.1453.29e-101.99e-09
phylumProteobacteria0.1453.35e-102e-09
genusSutterella-0.1443.49e-102.06e-09
speciesRoseburia_inulinivorans-0.1444.06e-102.37e-09
genusBarnesiella-0.1435.03e-102.86e-09
speciesBarnesiella_intestinihominis-0.1435.03e-102.86e-09
speciesEubacterium_sp_3_1_310.1435.14e-102.89e-09
speciesDorea_formicigenerans-0.1435.41e-103e-09
classClostridia-0.1427.23e-103.92e-09
orderClostridiales-0.1427.23e-103.92e-09
speciesBacteroides_oleiciplenus0.141.24e-096.65e-09
speciesHoldemania_sp_AP20.1382.18e-091.16e-08
speciesAnaerotruncus_unclassified-0.1382.25e-091.18e-08
speciesCoprococcus_sp_ART55_1-0.1354.54e-092.35e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1311.21e-086.21e-08
speciesEubacterium_ventriosum-0.1311.44e-087.31e-08
genusPantoea0.131.61e-088e-08
speciesPantoea_unclassified0.131.61e-088e-08
speciesRoseburia_hominis-0.1292e-089.83e-08
genusMitsuokella-0.1292.35e-081.14e-07
speciesBacteroides_ovatus0.1282.57e-081.24e-07
speciesButyrivibrio_crossotus-0.1282.77e-081.32e-07
genusFaecalibacterium-0.1273.72e-081.74e-07
speciesFaecalibacterium_prausnitzii-0.1273.72e-081.74e-07
genusPeptoniphilus0.1264.54e-082.1e-07
speciesEubacterium_limosum0.1256.45e-082.96e-07
speciesMitsuokella_unclassified-0.1248.19e-083.72e-07
speciesBacteroides_nordii0.1238.59e-083.86e-07
speciesEubacterium_hallii-0.1239.86e-084.39e-07
speciesAlistipes_senegalensis-0.1231.07e-074.72e-07
speciesBilophila_wadsworthia0.1211.59e-076.95e-07
familyBacteroidales_noname-0.121.82e-077.74e-07
genusBacteroidales_noname-0.121.82e-077.74e-07
speciesBacteroidales_bacterium_ph8-0.121.82e-077.74e-07
speciesRuminococcus_obeum-0.122.16e-079.1e-07
genusPhascolarctobacterium-0.1192.26e-079.36e-07
speciesPhascolarctobacterium_succinatutens-0.1192.26e-079.36e-07
speciesEubacterium_eligens-0.1192.33e-079.56e-07
genusCoprobacter-0.1182.9e-071.17e-06
speciesCoprobacter_fastidiosus-0.1182.9e-071.17e-06
speciesPrevotella_bivia0.1183.26e-071.3e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1183.37e-071.34e-06
genusCatenibacterium-0.1174.08e-071.59e-06
speciesCatenibacterium_mitsuokai-0.1174.08e-071.59e-06
genusBilophila0.1164.85e-071.88e-06
genusParaprevotella-0.1164.96e-071.9e-06
genusTuricibacter-0.1165.21e-071.98e-06
speciesParaprevotella_unclassified-0.1155.7e-072.15e-06
speciesOlsenella_unclassified-0.1147.06e-072.64e-06
speciesErysipelotrichaceae_bacterium_3_1_530.1147.38e-072.74e-06
genusBlautia0.1147.44e-072.74e-06
speciesTuricibacter_unclassified-0.1121.13e-064.13e-06
speciesBilophila_unclassified0.1121.31e-064.76e-06
genusParabacteroides0.1111.47e-065.3e-06
genusRoseburia-0.1111.56e-065.58e-06
speciesBacteroides_xylanisolvens0.1092.44e-068.66e-06
speciesLactobacillus_salivarius0.1082.93e-061.03e-05
speciesAnaerostipes_hadrus-0.1073.21e-061.12e-05
speciesPeptostreptococcaceae_noname_unclassified-0.1073.37e-061.17e-05
speciesParaprevotella_xylaniphila-0.1064.4e-061.52e-05
speciesCoprococcus_eutactus-0.1064.48e-061.53e-05
speciesMegasphaera_micronuciformis0.1055.46e-061.85e-05
speciesClostridium_bartlettii0.1055.62e-061.89e-05
speciesTuricibacter_sanguinis-0.1055.67e-061.9e-05
speciesCoprobacillus_sp_29_10.1029.61e-063.19e-05
familyOscillospiraceae0.1011.1e-053.61e-05
genusOscillibacter0.1011.1e-053.61e-05
speciesParabacteroides_unclassified0.11.53e-054.98e-05
speciesPrevotella_buccae0.0991.67e-055.4e-05
speciesClostridium_sp_L2_50-0.0982.01e-056.45e-05
speciesRuminococcus_sp_5_1_39BFAA-0.0982.05e-056.54e-05
genusOlsenella-0.0982.1e-056.65e-05
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0972.65e-058.34e-05
speciesStreptococcus_anginosus0.0972.87e-058.97e-05
genusKlebsiella0.0963.03e-059.41e-05
classBacteroidia0.0963.41e-050.000104
orderBacteroidales0.0963.41e-050.000104
phylumBacteroidetes0.0963.42e-050.000104
speciesEscherichia_unclassified0.0953.71e-050.000112
familySiphoviridae-0.0954.03e-050.000121
speciesMethanobrevibacter_unclassified-0.0944.59e-050.000137
phylumSynergistetes0.0944.93e-050.000143
classSynergistia0.0944.93e-050.000143
orderSynergistales0.0944.93e-050.000143
familySynergistaceae0.0944.93e-050.000143
speciesFusobacterium_nucleatum0.0944.93e-050.000143
speciesBacteroides_stercoris0.0944.98e-050.000143
familyLachnospiraceae-0.0935.2e-050.000149
speciesParaprevotella_clara-0.0926.96e-050.000198
phylumViruses_noname-0.0918.79e-050.000247
classViruses_noname-0.0918.79e-050.000247
genusPseudoflavonifractor-0.099.04e-050.000251
speciesPseudoflavonifractor_capillosus-0.099.04e-050.000251
classDeltaproteobacteria0.090.0001010.000276
orderDesulfovibrionales0.090.0001010.000276
familyDesulfovibrionaceae0.090.0001010.000276
familyPrevotellaceae-0.0890.0001150.000312
genusMegamonas0.0880.0001330.000359
speciesDesulfovibrio_piger-0.0880.0001420.000381
speciesKlebsiella_pneumoniae0.0880.0001510.000403
speciesMegamonas_unclassified0.0870.0001520.000403
speciesRuminococcus_lactaris-0.0870.0001590.000419
speciesPorphyromonas_uenonis0.0870.0001760.000462
genusPyramidobacter0.0860.0001820.000472
speciesPyramidobacter_piscolens0.0860.0001820.000472
speciesStreptococcus_pasteurianus0.0860.0002030.000524
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0850.0002260.00058
genusLachnospiraceae_noname0.0850.0002350.0006
familySutterellaceae-0.0850.0002460.000624
speciesRuminococcus_champanellensis-0.0850.0002530.000639
speciesRuminococcus_callidus-0.0830.0003160.000793
speciesVeillonella_dispar0.0830.0003260.000814
genusMegasphaera0.0820.0004130.00103
speciesBacteroides_pectinophilus-0.0810.000440.00109
speciesBifidobacterium_pseudocatenulatum0.0810.0004460.0011
genusAdlercreutzia-0.0810.0004870.00118
speciesAdlercreutzia_equolifaciens-0.0810.0004870.00118
speciesOscillibacter_unclassified0.0790.0006080.00147
speciesLactococcus_phage_P680-0.0790.0006150.00148
speciesMitsuokella_multacida-0.0780.0007930.0019
speciesRoseburia_intestinalis-0.0770.0008190.00195
genusCitrobacter0.0760.0009480.00225
speciesAlistipes_shahii-0.0760.001010.00238
speciesButyrivibrio_unclassified-0.0760.001060.00249
speciesCitrobacter_freundii0.0750.001120.00262
speciesVeillonella_parvula0.0750.001180.00274
genusOdoribacter-0.0750.00120.00278
orderCaudovirales-0.0740.001470.00338
speciesEubacterium_dolichum0.0730.001610.00369
speciesMegamonas_rupellensis0.0730.001690.00385
speciesFusobacterium_mortiferum0.0720.001850.0042
genusDesulfovibrio-0.0720.001860.0042
genusSiphoviridae_noname-0.0720.001940.00436
speciesLactobacillus_ruminis-0.0710.002160.00483
speciesBacteroides_coprophilus-0.0710.002190.00488
speciesLactobacillus_mucosae0.0710.002280.00505
genusCampylobacter0.070.002310.00509
speciesLachnospiraceae_bacterium_3_1_46FAA-0.070.002320.00509
speciesParabacteroides_goldsteinii0.070.002330.00509
speciesStreptococcus_thermophilus-0.0690.00270.00587
speciesClostridium_sp_KLE_17550.0680.003140.0068
speciesOscillibacter_sp_KLE_17450.0680.003160.0068
genusVeillonella0.0680.003170.0068
genusC2likevirus-0.0680.00320.00682
familyCampylobacteraceae0.0680.003210.00682
genusRuminococcus-0.0680.003290.00696
familyClostridiales_Family_XI_Incertae_Sedis0.0670.00350.00738
speciesKlebsiella_unclassified0.0670.003560.00747
speciesC2likevirus_unclassified-0.0670.003680.00769
familyAcidaminococcaceae-0.0670.00380.0079
speciesCitrobacter_unclassified0.0670.003970.00822
speciesAlistipes_putredinis-0.0660.00410.00845
genusButyricicoccus0.0660.004440.00907
speciesButyricicoccus_pullicaecorum0.0660.004440.00907
speciesStreptococcus_australis0.0660.004570.00928
genusSolobacterium0.0660.00460.00928
speciesSolobacterium_moorei0.0660.00460.00928
speciesHoldemania_filiformis0.0650.005220.0105
speciesErysipelotrichaceae_bacterium_21_30.0640.005280.0106
speciesPeptostreptococcus_anaerobius0.0640.005860.0117
speciesLachnospiraceae_bacterium_1_1_57FAA0.0630.006120.0121
speciesLactococcus_phage_jm2-0.0630.006240.0123
speciesCoprobacillus_sp_D60.0630.006370.0125
speciesEnterobacteria_phage_HK5440.0630.006720.0132
speciesOdoribacter_splanchnicus-0.0630.006750.0132
familyPorphyromonadaceae0.0610.008260.016
orderBurkholderiales-0.0610.008410.0163
phylumVerrucomicrobia-0.0610.00880.0166
classVerrucomicrobiae-0.0610.00880.0166
orderVerrucomicrobiales-0.0610.00880.0166
familyVerrucomicrobiaceae-0.0610.00880.0166
genusAkkermansia-0.0610.00880.0166
speciesAkkermansia_muciniphila-0.0610.00880.0166
speciesEubacterium_cylindroides-0.060.009130.0172
genusGordonibacter0.060.009240.0172
speciesGordonibacter_pamelaeae0.060.009240.0172
genusWeissella0.0590.01030.0191
orderCoriobacteriales-0.0590.01090.0201
familyCoriobacteriaceae-0.0590.01090.0201
speciesProteus_mirabilis0.0590.0110.0202
speciesBacteroides_sp_3_1_190.0570.0130.0238
classEpsilonproteobacteria0.0570.01360.0247
orderCampylobacterales0.0570.01360.0247
speciesBacteroides_intestinalis0.0570.01370.0248
speciesLactococcus_phage_phi7-0.0570.01430.0258
speciesMegamonas_hypermegale0.0560.01610.0289
orderLactobacillales0.0550.01710.0306
familyEnterococcaceae0.0550.01750.0312
speciesStreptococcus_infantarius0.0550.01780.0316
classBacilli0.0550.01820.0322
classBetaproteobacteria-0.0550.01840.0324
speciesSutterella_parvirubra0.0540.01880.033
genusStreptococcus0.0540.0190.0332
genusEnterococcus0.0540.01920.0334
genusOxalobacter-0.0540.01940.0335
speciesOxalobacter_formigenes-0.0540.01940.0335
classErysipelotrichia0.0530.02250.0385
orderErysipelotrichales0.0530.02250.0385
familyErysipelotrichaceae0.0530.02250.0385
speciesStreptococcus_salivarius0.0530.02280.0389
speciesBifidobacterium_catenulatum-0.0520.02330.0396
speciesBifidobacterium_bifidum-0.0520.02420.0409
familyBurkholderiales_noname0.0520.0250.0421
speciesBacteroides_salanitronis-0.0520.02510.0422
familyStreptococcaceae0.0510.02630.044
speciesParabacteroides_distasonis0.0510.02760.046
speciesVeillonella_unclassified0.0510.02810.0467
familyOxalobacteraceae-0.0510.02830.0469
genusBurkholderiales_noname0.050.02950.0485
speciesBurkholderiales_bacterium_1_1_470.050.02950.0485
speciesBacteroides_caccae0.050.0310.0508
speciesBifidobacterium_dentium0.0490.03260.0532
genusEnterobacter0.0490.03460.0563
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0490.03590.0582
speciesEnterobacter_cloacae0.0480.0360.0582
familyVeillonellaceae0.0480.03830.0617
speciesStreptococcus_mutans0.0460.04580.0735
speciesPrevotella_copri-0.0450.05130.0821
speciesAggregatibacter_segnis0.0450.05180.0822
orderViruses_noname-0.0450.05190.0822
speciesLactobacillus_rhamnosus-0.0450.05190.0822
familyBacillales_noname0.0450.05240.0824
genusGemella0.0450.05240.0824
genusRuminococcaceae_noname-0.0450.05350.0836
speciesRuminococcaceae_bacterium_D16-0.0450.05350.0836
genusParasutterella0.0440.05450.0846
speciesParasutterella_excrementihominis0.0440.05450.0846
speciesAlistipes_finegoldii-0.0440.05780.0894
genusBifidobacterium-0.0440.05940.0916
orderBacillales0.0430.06280.0966
speciesKlebsiella_sp_MS_92_30.0430.06410.0977
speciesLactococcus_lactis-0.0430.06420.0977
speciesDialister_invisus0.0430.06420.0977
phylumActinobacteria-0.0420.06620.1
classActinobacteria-0.0420.06620.1
speciesOdoribacter_unclassified-0.0420.06630.1
genusMorganella0.0420.07050.106
speciesMorganella_morganii0.0420.07050.106
genusAnaerotruncus0.0420.07080.106
genusPorphyromonas0.0420.07270.108
speciesLactococcus_phage_936_sensu_lato-0.0410.07340.109
speciesOdoribacter_laneus-0.0410.07420.11
genusAcidaminococcus0.0410.07490.11
genusPeptostreptococcus0.0410.07590.111
speciesParabacteroides_johnsonii0.0410.0760.111
speciesBacteroides_cellulosilyticus0.0410.07760.113
speciesPorphyromonas_asaccharolytica0.040.08180.119
genusProteus0.040.08410.122
speciesStreptococcus_mitis_oralis_pneumoniae0.040.08420.122
speciesStreptococcus_sanguinis0.040.08460.122
orderBifidobacteriales-0.040.08490.122
familyBifidobacteriaceae-0.040.08490.122
speciesDesulfovibrio_desulfuricans-0.040.08520.122
genusSutterellaceae_unclassified-0.0380.09670.138
speciesDorea_unclassified0.0380.10.142
genusAggregatibacter0.0380.1040.147
speciesBacteroides_uniformis0.0380.1050.148
speciesParabacteroides_merdae-0.0370.1110.156
speciesClostridium_leptum-0.0370.1120.157
speciesMegasphaera_unclassified0.0360.1150.161
speciesAlistipes_indistinctus-0.0360.1170.163
familyPeptostreptococcaceae0.0360.1220.17
speciesRuminococcus_bromii-0.0350.1280.178
speciesAcidaminococcus_fermentans0.0350.1290.179
speciesVeillonella_atypica0.0350.1310.181
genusTunalikevirus-0.0350.1320.181
speciesParvimonas_unclassified0.0350.1320.181
speciesParabacteroides_sp_D13-0.0350.1320.181
genusParvimonas0.0350.1340.183
speciesBacteroides_clarus-0.0350.1350.184
genusMethanosphaera-0.0350.1360.184
speciesMethanosphaera_stadtmanae-0.0350.1360.184
speciesWeissella_cibaria0.0340.1390.187
speciesBacteroides_salyersiae0.0330.150.202
genusLactococcus-0.0330.1510.202
speciesClostridium_spiroforme0.0330.1550.207
speciesKlebsiella_phage_KP36-0.0330.1560.208
speciesBifidobacterium_longum-0.0310.1730.23
speciesLactobacillus_plantarum0.0310.1770.234
speciesLactococcus_phage_bIL67-0.0310.1770.234
genusLambdalikevirus0.0310.180.237
speciesStreptococcus_gordonii0.0310.1820.239
speciesStreptococcus_lutetiensis0.030.1880.246
speciesPropionibacterium_freudenreichii-0.030.1910.25
speciesAlistipes_onderdonkii-0.030.1930.252
speciesAlistipes_sp_HGB5-0.0290.2090.272
speciesHaemophilus_paraphrohaemolyticus0.0290.2120.275
speciesDialister_succinatiphilus-0.0280.2180.282
genusDialister0.0280.2260.291
speciesBacteroides_coprocola-0.0280.230.295
speciesRuminococcus_torques0.0280.230.295
speciesBifidobacterium_animalis-0.0280.2310.295
speciesLactococcus_garvieae0.0270.2350.3
speciesBacteroides_plebeius-0.0270.2440.31
speciesBifidobacterium_angulatum-0.0270.2460.312
genusLeuconostoc-0.0270.2520.319
genusPeptostreptococcaceae_noname0.0260.2560.323
speciesMegamonas_funiformis0.0260.2620.33
speciesSlackia_piriformis-0.0260.2630.33
speciesLactobacillus_oris0.0250.2720.341
genusAnaerostipes0.0250.2840.355
familyLeuconostocaceae0.0240.2960.368
speciesKlebsiella_oxytoca0.0240.2960.368
genusPrevotella-0.0230.3120.387
speciesRuminococcus_sp_JC304-0.0230.3130.387
speciesEnterococcus_faecalis0.0230.3210.396
familyLactobacillaceae0.0230.3240.398
speciesLactobacillus_amylovorus-0.0220.3330.407
speciesStreptococcus_parasanguinis0.0220.3330.407
genusLactobacillus0.0220.3520.429
speciesEnterobacter_aerogenes0.0210.3580.436
speciesWeissella_confusa0.0210.3630.44
familyActinomycetaceae0.0210.3650.442
genusActinobacillus0.0210.370.446
speciesActinobacillus_unclassified0.0210.370.446
speciesHoldemania_unclassified0.0210.3710.446
familyPodoviridae0.0210.3730.447
speciesBifidobacterium_breve0.0210.3750.447
speciesLactobacillus_fermentum0.0210.3750.447
speciesCampylobacter_concisus0.020.3980.473
speciesBacteroides_faecis-0.0190.4090.485
speciesBacteroides_vulgatus0.0190.4150.491
speciesCollinsella_intestinalis0.0180.4260.503
speciesPrevotella_stercorea0.0180.4320.508
familyPropionibacteriaceae-0.0180.4340.51
speciesLeuconostoc_lactis0.0180.4460.522
genusButyricimonas0.0170.4520.527
speciesButyricimonas_synergistica0.0170.4520.527
speciesLactobacillus_casei_paracasei0.0170.4680.544
speciesLactobacillus_sanfranciscensis-0.0170.4690.544
speciesAcidaminococcus_intestini0.0170.4750.55
speciesBacteroides_dorei0.0160.4830.557
speciesGemella_morbillorum0.0160.4950.57
genusActinomyces0.0160.4970.571
speciesBacteroides_barnesiae-0.0150.5110.585
genusPropionibacterium-0.0150.5230.598
speciesBacteroides_sp_1_1_60.0140.5320.607
speciesRothia_mucilaginosa-0.0140.5370.611
speciesLactobacillus_crispatus0.0140.5470.621
speciesBacteroides_fluxus0.0140.5550.628
speciesBacteroides_sp_2_1_22-0.0120.5970.674
speciesLactobacillus_acidophilus-0.0120.5990.675
speciesBacteroides_finegoldii0.0120.6010.675
familyViruses_noname0.0120.6130.686
genusViruses_noname0.0120.6130.686
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0110.6270.697
classNegativicutes-0.0110.6280.697
orderSelenomonadales-0.0110.6280.697
speciesClostridium_perfringens-0.0110.6390.708
speciesPeptostreptococcus_stomatis0.0110.6470.715
speciesAcidaminococcus_unclassified0.010.6520.719
familyMyoviridae0.010.6670.734
speciesEggerthella_sp_1_3_56FAA-0.010.6750.741
speciesBlautia_hydrogenotrophica-0.0090.6860.751
speciesBacteroides_eggerthii-0.0090.6880.752
genusStaphylococcus-0.0090.710.774
speciesCollinsella_unclassified0.0080.7190.782
orderAeromonadales0.0080.7240.786
orderPseudomonadales-0.0080.7330.794
speciesParabacteroides_sp_20_3-0.0070.7740.835
genusMyoviridae_noname0.0070.7750.835
speciesAlistipes_unclassified0.0060.7830.842
genusSlackia0.0060.7880.845
genusAcidaminococcaceae_unclassified-0.0060.7990.855
speciesOscillibacter_sp_KLE_17280.0060.8060.861
speciesStreptococcus_phage_Sfi21-0.0060.8080.861
speciesCollinsella_tanakaei0.0060.810.861
speciesBacteroides_sp_4_3_47FAA-0.0050.8320.88
genusErysipelotrichaceae_noname0.0050.8330.88
familyRikenellaceae-0.0050.8350.88
genusAlistipes-0.0050.8350.88
speciesLactobacillus_gasseri0.0040.8510.895
speciesStreptococcus_vestibularis-0.0040.8530.895
familyStaphylococcaceae-0.0040.870.908
speciesEnterococcus_faecium0.0040.870.908
speciesMegasphaera_elsdenii0.0040.8780.915
speciesLactobacillus_vaginalis-0.0030.8830.916
speciesRoseburia_unclassified-0.0030.8830.916
familySuccinivibrionaceae-0.0030.8890.92
speciesLactobacillus_delbrueckii-0.0030.9020.932
orderPasteurellales0.0020.9210.947
familyPasteurellaceae0.0020.9210.947
genusHaemophilus0.0020.9320.956
speciesHaemophilus_parainfluenzae0.0020.9360.958
genusCoriobacteriaceae_noname0.0010.950.966
speciesHaemophilus_sputorum-0.0010.9520.966
genusSuccinatimonas-0.0010.9540.966
speciesSuccinatimonas_hippei-0.0010.9540.966
speciesCoriobacteriaceae_bacterium_phI-0.0010.9540.966
speciesBacteroides_massiliensis-0.0010.9670.977
orderActinomycetales-0.0010.9720.979
familyMicrococcaceae-0.0010.9730.979
genusRothia-0.0010.980.983
speciesAlistipes_sp_AP11-0.0010.9810.983
speciesLactobacillus_reuteri0.00.9910.991
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.0003809024454470.0001386730299860.000176119906905562318.8888
Crohns diseaseSpain17660.0004245152674924.50217446567e-050.04468187530461117037.1405
Type II diabetesChina1831850.0007694064419230.0003615985481810.0460647772999676922.3702
ObesityDenmark1691238.40967088407e-069.39688146475e-050.0834697589476663121.8046
Ulcerative colitisSpain78664.16557074085e-054.50217446567e-050.13109162959825327.225
Colorectal cancerAustria64359.24524107875e-052.86109571204e-050.3002488786771245042.1234
Type II diabetesDenmark752770.0002523721734144.37104235457e-050.3398039240011680955.0988
Type II diabetesSweden53923.51445326321e-051.8718013683e-050.8654225692252595787.9004
Rheumatoid arthritisChina127980.0001155962594860.0002598361975010.908062843642785092.8736
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382