MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-27 13:55:43 PST
Job id & description: 2142, dec28p
Query type: protein
Count queries & homologs: 28, 28
Min % identity & max e-value: 98%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
V1_UC50908708CompleteK01593COG0076unknownunknown100.0100.0100.0
O2_CD2912402CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
V1_CD18941342CompleteK01593COG0076unknownunknown100.0100.0100.0
N043A_GL0079676972000Lack 5'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
V1_FI18966151CompleteK01593COG0076unknownunknown100.0100.0100.0
O2_UC19990955CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
V1_CD3991403Lack 5'-endK01593COG0076unknownunknown100.0100.0100.0
MH0382_GL01264031010873CompleteK01593COG0076unknownunknown100.0100.0100.0
V1_CD31039752CompleteK01593COG0076unknownunknown100.0100.0100.0
158924089_stool11047184CompleteK01593COG0076FirmicutesBlautia100.0100.0100.0
DLM013_GL00352131040521CompleteK01593COG0076unknownunknown100.0100.0100.0
V1_FI181051560CompleteK01593COG0076FirmicutesBlautia100.0100.0100.0
T2D_62A1058454CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
742723_HMPREF94771059168CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
V1_CD121062773CompleteK01593COG0076FirmicutesBlautia100.0100.0100.0
V1_CD461062982CompleteK01593COG0076FirmicutesBlautia100.0100.0100.0
763536994_stool21111887CompleteK01593COG0076unknownunknown100.0100.0100.0
MH0088_GL00023801082374CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
T2D_78A1534424Lack 5'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
DLM013_GL00259991958762Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
159753524_stool12573449Lack both endsK01593COG0076unknownunknown100.0100.0100.0
V1_UC303048555Lack 3'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
V1_CD123404230Lack 3'-endK01593COG0076Firmicutesunknown100.0100.0100.0
V1_UC114182957Lack 3'-endK01593COG0076unknownunknown100.0100.0100.0
V1_CD34355115Lack 3'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
V1_UC314335176CompleteK13745COG0076unknownunknown100.0100.0100.0
O2_CD34418726Lack both endsK01593COG0076unknownunknown100.0100.0100.0
V1_FI184539039Lack both endsK01593COG0076unknownunknown100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.8360.00.0
speciesCoprobacillus_unclassified0.5386.42e-1411.52e-138
genusCoprobacillus0.5368.29e-1401.3e-137
speciesClostridium_bolteae0.5221.68e-1311.98e-129
speciesClostridium_ramosum0.4981.46e-1171.38e-115
speciesLachnospiraceae_bacterium_9_1_43BFAA0.4831.13e-1098.89e-108
speciesClostridium_nexile0.4777.27e-1074.9e-105
speciesLachnospiraceae_bacterium_1_4_56FAA0.421.21e-807.14e-79
familyFusobacteriaceae0.4165.56e-792.92e-77
phylumFusobacteria0.4134.01e-781.58e-76
classFusobacteriia0.4134.01e-781.58e-76
orderFusobacteriales0.4134.01e-781.58e-76
speciesClostridium_symbiosum0.4112.61e-779.48e-76
genusBlautia0.4114.13e-771.39e-75
genusFusobacterium0.416.66e-772.1e-75
speciesSubdoligranulum_unclassified-0.4033.87e-741.14e-72
speciesLachnospiraceae_bacterium_6_1_63FAA0.47.4e-732.05e-71
speciesLachnospiraceae_bacterium_2_1_58FAA0.3971.1e-712.88e-70
speciesClostridium_clostridioforme0.3956.45e-711.6e-69
genusSubdoligranulum-0.3934.38e-701.03e-68
speciesEggerthella_unclassified0.3891.15e-682.58e-67
genusEggerthella0.3882.32e-684.98e-67
familyClostridiaceae0.3861.44e-672.96e-66
speciesClostridiales_bacterium_1_7_47FAA0.3852.76e-675.43e-66
genusClostridium0.3854.33e-678.18e-66
genusCoprococcus-0.382.48e-654.5e-64
genusFlavonifractor0.3745.45e-639.19e-62
speciesFlavonifractor_plautii0.3745.45e-639.19e-62
speciesClostridium_hathewayi0.3721.87e-623.04e-61
speciesAlistipes_senegalensis-0.3716.21e-629.77e-61
speciesCoprococcus_catus-0.3671e-601.52e-59
speciesBlautia_producta0.3558.8e-571.3e-55
speciesAnaerostipes_unclassified0.3551.15e-561.64e-55
speciesRoseburia_hominis-0.3521.05e-551.46e-54
familyBacteroidales_noname-0.3461.44e-531.84e-52
genusBacteroidales_noname-0.3461.44e-531.84e-52
speciesBacteroidales_bacterium_ph8-0.3461.44e-531.84e-52
speciesEubacterium_siraeum-0.327.07e-468.78e-45
speciesEscherichia_coli0.3177.08e-458.57e-44
speciesAlistipes_shahii-0.3144.67e-445.51e-43
speciesFusobacterium_ulcerans0.3138.85e-441.02e-42
genusEscherichia0.3131.21e-431.36e-42
familyClostridiales_noname0.3081.66e-421.82e-41
orderEnterobacteriales0.3082.89e-423.03e-41
familyEnterobacteriaceae0.3082.89e-423.03e-41
speciesEubacterium_eligens-0.3074.78e-424.9e-41
genusButyrivibrio-0.3061.02e-411.02e-40
familyRikenellaceae-0.33.01e-402.9e-39
genusAlistipes-0.33.01e-402.9e-39
genusOdoribacter-0.2994.9e-404.63e-39
speciesAnaerotruncus_unclassified-0.2957.51e-396.95e-38
speciesAlistipes_putredinis-0.2931.89e-381.72e-37
speciesEubacterium_rectale-0.2925.49e-384.89e-37
speciesCoprococcus_sp_ART55_1-0.2918.64e-387.55e-37
familyRuminococcaceae-0.2919.6e-388.24e-37
speciesOdoribacter_splanchnicus-0.291.29e-371.09e-36
speciesLachnospiraceae_bacterium_5_1_57FAA0.2893.42e-372.83e-36
classGammaproteobacteria0.2852.39e-361.94e-35
speciesEubacterium_dolichum0.2812.51e-352.01e-34
genusBarnesiella-0.2773.12e-342.41e-33
speciesBarnesiella_intestinihominis-0.2773.12e-342.41e-33
speciesCoprococcus_comes-0.2764.12e-343.14e-33
speciesBacteroides_fragilis0.2759.05e-346.78e-33
genusOxalobacter-0.2724.72e-333.43e-32
speciesOxalobacter_formigenes-0.2724.72e-333.43e-32
speciesErysipelotrichaceae_bacterium_2_2_44A0.2725.25e-333.75e-32
speciesFusobacterium_varium0.2725.68e-334e-32
familyOxalobacteraceae-0.271.57e-321.09e-31
genusEubacterium-0.2684.22e-322.89e-31
genusClostridiales_noname0.2684.44e-322.99e-31
familyEubacteriaceae-0.2684.61e-323.06e-31
genusFaecalibacterium-0.2621.12e-307.24e-30
speciesFaecalibacterium_prausnitzii-0.2621.12e-307.24e-30
speciesEubacterium_ramulus-0.2621.14e-307.27e-30
speciesRuminococcus_lactaris-0.2512.99e-281.88e-27
speciesMitsuokella_unclassified-0.2513.4e-282.11e-27
speciesFusobacterium_mortiferum0.2513.61e-282.21e-27
speciesAlistipes_finegoldii-0.254.33e-282.62e-27
genusMitsuokella-0.2496.46e-283.86e-27
speciesEubacterium_biforme-0.2497.87e-284.64e-27
speciesClostridium_citroniae0.2481.06e-276.18e-27
speciesBifidobacterium_adolescentis-0.2481.38e-277.94e-27
speciesButyrivibrio_crossotus-0.2471.99e-271.13e-26
speciesRuminococcus_callidus-0.2441.02e-265.73e-26
speciesEggerthella_lenta0.2422.27e-261.26e-25
speciesDorea_longicatena-0.2414.08e-262.24e-25
phylumProteobacteria0.2372.96e-251.61e-24
speciesMethanobrevibacter_smithii-0.2331.6e-248.58e-24
speciesClostridium_asparagiforme0.2331.74e-249.23e-24
speciesEubacterium_ventriosum-0.2331.9e-249.96e-24
classMethanobacteria-0.2323.09e-241.57e-23
orderMethanobacteriales-0.2323.09e-241.57e-23
familyMethanobacteriaceae-0.2323.09e-241.57e-23
phylumEuryarchaeota-0.2314.81e-242.42e-23
genusMethanobrevibacter-0.237.01e-243.48e-23
speciesCoprococcus_eutactus-0.2281.65e-238.11e-23
speciesMegasphaera_micronuciformis0.2255.96e-232.9e-22
genusCoprobacter-0.2222.64e-221.26e-21
speciesCoprobacter_fastidiosus-0.2222.64e-221.26e-21
speciesClostridium_sp_L2_50-0.2171.94e-219.16e-21
speciesLachnospiraceae_bacterium_2_1_46FAA0.2162.84e-211.33e-20
genusParaprevotella-0.2163.23e-211.49e-20
familyBacteroidaceae0.2163.96e-211.8e-20
genusBacteroides0.2163.96e-211.8e-20
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2155.25e-212.36e-20
speciesParaprevotella_unclassified-0.2155.73e-212.55e-20
speciesAlistipes_indistinctus-0.2149.76e-214.31e-20
speciesParaprevotella_xylaniphila-0.2131.3e-205.68e-20
speciesCollinsella_aerofaciens-0.2121.68e-207.27e-20
speciesStreptococcus_mitis_oralis_pneumoniae0.2113.29e-201.41e-19
phylumVerrucomicrobia-0.213.61e-201.47e-19
classVerrucomicrobiae-0.213.61e-201.47e-19
orderVerrucomicrobiales-0.213.61e-201.47e-19
familyVerrucomicrobiaceae-0.213.61e-201.47e-19
genusAkkermansia-0.213.61e-201.47e-19
speciesAkkermansia_muciniphila-0.213.61e-201.47e-19
genusKlebsiella0.2071.46e-195.89e-19
speciesKlebsiella_pneumoniae0.2062.47e-199.88e-19
speciesParaprevotella_clara-0.2037.56e-193e-18
classClostridia-0.1984.92e-181.92e-17
orderClostridiales-0.1984.92e-181.92e-17
speciesFusobacterium_nucleatum0.1978.78e-183.4e-17
genusAnaerotruncus-0.1951.84e-177.06e-17
familyPrevotellaceae-0.191.14e-164.34e-16
familyBacillales_noname0.1864.91e-161.84e-15
genusGemella0.1864.91e-161.84e-15
genusPeptostreptococcus0.1865.16e-161.92e-15
genusCatenibacterium-0.1856.9e-162.52e-15
speciesCatenibacterium_mitsuokai-0.1856.9e-162.52e-15
familyEnterococcaceae0.1813.21e-151.17e-14
genusEnterococcus0.1813.42e-151.23e-14
speciesEubacterium_sp_3_1_310.1796.11e-152.18e-14
genusSolobacterium0.1787.74e-152.73e-14
speciesSolobacterium_moorei0.1787.74e-152.73e-14
genusActinomyces0.1788.88e-153.1e-14
familyActinomycetaceae0.1771.13e-143.92e-14
speciesOlsenella_unclassified-0.1761.73e-145.96e-14
speciesAlistipes_onderdonkii-0.1735.36e-141.83e-13
speciesPrevotella_buccae0.1735.53e-141.88e-13
genusDesulfovibrio-0.1725.91e-141.99e-13
speciesBacteroides_pectinophilus-0.1718.88e-142.97e-13
orderBacillales0.1691.78e-135.92e-13
genusPantoea0.1673.14e-131.03e-12
speciesPantoea_unclassified0.1673.14e-131.03e-12
genusButyricicoccus0.1649.25e-132.99e-12
speciesButyricicoccus_pullicaecorum0.1649.25e-132.99e-12
speciesParabacteroides_merdae-0.1595.14e-121.65e-11
genusCollinsella-0.1586.62e-122.11e-11
speciesStreptococcus_anginosus0.1586.87e-122.18e-11
speciesLactobacillus_salivarius0.1571e-113.15e-11
speciesRuminococcus_torques0.1561.18e-113.69e-11
speciesRuminococcus_obeum-0.1551.74e-115.4e-11
speciesPeptostreptococcus_stomatis0.1551.84e-115.67e-11
speciesMethanobrevibacter_unclassified-0.1551.85e-115.67e-11
speciesStreptococcus_sanguinis0.1532.96e-119.01e-11
genusAdlercreutzia-0.1523.67e-111.1e-10
speciesAdlercreutzia_equolifaciens-0.1523.67e-111.1e-10
speciesRoseburia_inulinivorans-0.1524.07e-111.22e-10
speciesErysipelotrichaceae_bacterium_6_1_450.1524.47e-111.33e-10
speciesLactobacillus_ruminis-0.1515.44e-111.6e-10
speciesRuminococcus_champanellensis-0.1515.58e-111.64e-10
genusLachnospiraceae_noname0.1499.02e-112.63e-10
familyStreptococcaceae0.1481.14e-103.3e-10
genusStreptococcus0.1481.21e-103.48e-10
classBacilli0.1481.38e-103.95e-10
speciesClostridium_leptum-0.1471.47e-104.18e-10
speciesCollinsella_intestinalis0.1471.72e-104.86e-10
orderLactobacillales0.1452.76e-107.75e-10
speciesDesulfovibrio_piger-0.1444.06e-101.13e-09
speciesErysipelotrichaceae_bacterium_3_1_530.1434.95e-101.37e-09
genusDorea-0.1436.01e-101.66e-09
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1427.9e-102.17e-09
speciesButyrivibrio_unclassified-0.1417.96e-102.17e-09
genusPhascolarctobacterium-0.1419.94e-102.68e-09
speciesPhascolarctobacterium_succinatutens-0.1419.94e-102.68e-09
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1411.02e-092.74e-09
genusOlsenella-0.1411.03e-092.75e-09
speciesDorea_formicigenerans-0.141.21e-093.21e-09
genusMegasphaera0.1391.62e-094.27e-09
speciesVeillonella_parvula0.1382.1e-095.51e-09
speciesEscherichia_unclassified0.1372.65e-096.91e-09
speciesMitsuokella_multacida-0.1363.65e-099.47e-09
phylumFirmicutes-0.1354.88e-091.26e-08
speciesEnterococcus_faecalis0.1337.24e-091.86e-08
speciesClostridium_sp_ATCC_BAA_4420.1311.23e-083.14e-08
speciesRuminococcus_bromii-0.131.58e-084.01e-08
speciesEubacterium_hallii-0.131.86e-084.69e-08
speciesStreptococcus_pasteurianus0.1291.97e-084.95e-08
speciesEnterococcus_faecium0.1282.61e-086.52e-08
speciesParabacteroides_unclassified0.1282.82e-087.01e-08
speciesAnaerotruncus_colihominis0.1283.09e-087.64e-08
genusClostridiaceae_noname0.1273.91e-089.56e-08
speciesClostridiaceae_bacterium_JC1180.1273.91e-089.56e-08
speciesStreptococcus_lutetiensis0.1264.06e-089.88e-08
speciesEubacterium_limosum0.1265.04e-081.22e-07
speciesErysipelotrichaceae_bacterium_21_30.1265.08e-081.22e-07
genusRoseburia-0.1255.25e-081.26e-07
speciesStreptococcus_vestibularis0.1247.28e-081.74e-07
speciesVeillonella_dispar0.1248.01e-081.9e-07
orderActinomycetales0.1238.61e-082.03e-07
speciesClostridium_perfringens0.1239.08e-082.13e-07
genusVeillonella0.1221.24e-072.9e-07
speciesDesulfovibrio_desulfuricans-0.1211.72e-074e-07
speciesStreptococcus_gordonii0.122.13e-074.93e-07
genusMegamonas0.1182.92e-076.72e-07
speciesMegamonas_unclassified0.1183.07e-077.03e-07
speciesLactobacillus_mucosae0.1164.49e-071.02e-06
genusMorganella0.1155.58e-071.26e-06
speciesMorganella_morganii0.1155.58e-071.26e-06
genusButyricimonas-0.1156.18e-071.38e-06
speciesButyricimonas_synergistica-0.1156.18e-071.38e-06
speciesClostridium_bartlettii0.1156.44e-071.43e-06
speciesBlautia_hydrogenotrophica0.1147.24e-071.6e-06
speciesCampylobacter_concisus0.1147.39e-071.63e-06
speciesSutterella_wadsworthensis-0.1139.3e-072.04e-06
speciesClostridium_sp_KLE_17550.1139.71e-072.12e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1121.28e-062.77e-06
speciesStreptococcus_infantarius0.1121.28e-062.77e-06
speciesCollinsella_tanakaei0.1121.33e-062.87e-06
speciesBifidobacterium_dentium0.1111.51e-063.24e-06
familySutterellaceae-0.111.76e-063.76e-06
genusRuminococcus-0.111.84e-063.91e-06
speciesStreptococcus_salivarius0.112.05e-064.34e-06
familyPeptostreptococcaceae0.1092.27e-064.78e-06
speciesKlebsiella_unclassified0.1092.38e-064.99e-06
orderBurkholderiales-0.1082.98e-066.22e-06
speciesBacteroides_coprophilus-0.1073.21e-066.67e-06
speciesGemella_morbillorum0.1073.8e-067.87e-06
genusAggregatibacter0.1055.08e-061.05e-05
genusPseudoflavonifractor-0.1055.78e-061.18e-05
speciesPseudoflavonifractor_capillosus-0.1055.78e-061.18e-05
genusSutterella-0.1037.83e-061.59e-05
familyAcidaminococcaceae-0.1038.17e-061.66e-05
genusParasutterella-0.1038.48e-061.7e-05
speciesParasutterella_excrementihominis-0.1038.48e-061.7e-05
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1029.2e-061.84e-05
speciesVeillonella_atypica0.1029.92e-061.98e-05
speciesStreptococcus_mutans0.1021.08e-052.14e-05
classBetaproteobacteria-0.0991.68e-053.32e-05
speciesStreptococcus_australis0.0982.02e-053.97e-05
speciesPrevotella_copri-0.0982.1e-054.11e-05
speciesDialister_succinatiphilus-0.0982.21e-054.31e-05
speciesBacteroides_thetaiotaomicron0.0982.23e-054.33e-05
speciesAggregatibacter_segnis0.0972.45e-054.74e-05
speciesProteus_mirabilis0.0972.57e-054.95e-05
speciesHaemophilus_paraphrohaemolyticus0.0963.33e-056.39e-05
speciesLactobacillus_fermentum0.0953.57e-056.82e-05
speciesLactobacillus_crispatus0.0953.68e-057e-05
speciesBacteroides_cellulosilyticus-0.0944.48e-058.49e-05
speciesMegamonas_rupellensis0.0935.19e-059.8e-05
genusMethanosphaera-0.0926.86e-050.000128
speciesMethanosphaera_stadtmanae-0.0926.86e-050.000128
speciesBifidobacterium_angulatum-0.0926.98e-050.00013
genusPeptostreptococcaceae_noname0.0918.02e-050.000149
speciesCitrobacter_unclassified0.0918.1e-050.00015
genusPeptoniphilus0.090.0001010.000185
speciesLactobacillus_gasseri0.090.0001010.000185
speciesBifidobacterium_breve0.0890.0001180.000216
speciesBacteroides_uniformis-0.0880.0001280.000233
classErysipelotrichia0.0880.0001380.000249
orderErysipelotrichales0.0880.0001380.000249
familyErysipelotrichaceae0.0880.0001380.000249
speciesAlistipes_sp_AP11-0.0880.0001430.000257
speciesHoldemania_sp_AP20.0880.0001470.000263
genusProteus0.0870.0001530.000273
speciesSubdoligranulum_sp_4_3_54A2FAA0.0870.0001640.000291
genusCitrobacter0.0860.0001840.000325
speciesBifidobacterium_pseudocatenulatum0.0850.0002150.000379
speciesClostridium_spiroforme0.0850.0002260.000397
speciesRothia_mucilaginosa0.0850.0002430.000425
speciesStreptococcus_parasanguinis0.0830.0003180.000554
speciesVeillonella_unclassified0.0830.0003420.000593
familyPorphyromonadaceae-0.0820.000360.000622
speciesParvimonas_unclassified0.0820.0003820.000658
genusParvimonas0.0820.0003860.000663
genusAnaerostipes0.0820.0004010.000686
speciesCitrobacter_freundii0.0810.0004210.000717
speciesCoriobacteriaceae_bacterium_phI0.0810.0004580.000778
genusPrevotella-0.0810.0004850.000821
speciesCollinsella_unclassified0.080.0005650.000951
familyLeuconostocaceae0.080.0005660.000951
familyMicrococcaceae0.0790.0006720.00112
genusRothia0.0780.0006970.00116
speciesLactobacillus_oris0.0780.0007240.0012
genusCampylobacter0.0780.0007820.0013
speciesRoseburia_intestinalis-0.0770.0008010.00132
speciesWeissella_cibaria0.0770.0008170.00134
genusCoriobacteriaceae_noname0.0770.0008370.00137
speciesBacteroides_stercoris0.0770.0008740.00143
familyLactobacillaceae0.0750.001180.00192
speciesAnaerostipes_hadrus-0.0730.001510.00245
familyCampylobacteraceae0.0730.001690.00273
speciesDorea_unclassified0.0720.00190.00306
speciesLactobacillus_vaginalis0.0710.002060.00331
speciesBacteroides_eggerthii-0.070.002340.00374
genusLactobacillus0.070.002420.00386
speciesBacteroides_ovatus0.0680.003280.00521
familyVeillonellaceae0.0680.003360.00532
speciesLactococcus_phage_936_sensu_lato-0.0680.003450.00545
speciesPeptostreptococcaceae_noname_unclassified-0.0670.003620.0057
speciesParabacteroides_sp_D13-0.0670.003730.00585
genusBurkholderiales_noname-0.0660.004170.0065
speciesBurkholderiales_bacterium_1_1_47-0.0660.004170.0065
familyBurkholderiales_noname-0.0660.004370.00678
genusRuminococcaceae_noname-0.0650.004860.00749
speciesRuminococcaceae_bacterium_D16-0.0650.004860.00749
genusTuricibacter-0.0650.004870.00749
speciesTuricibacter_unclassified-0.0650.00490.00751
speciesKlebsiella_sp_MS_92_30.0650.005190.00793
genusWeissella0.0640.005620.00856
speciesEubacterium_cylindroides-0.0640.006010.00912
speciesMegamonas_hypermegale0.0630.006490.00982
speciesBacteroides_caccae-0.0630.006540.00986
speciesC2likevirus_unclassified-0.0630.00670.0101
orderPseudomonadales0.0620.007620.0114
genusC2likevirus-0.0620.007640.0114
speciesBacteroides_finegoldii-0.0620.007650.0114
speciesBifidobacterium_catenulatum-0.0610.008290.0123
speciesEnterobacter_cloacae0.0610.00830.0123
speciesLactobacillus_amylovorus0.0610.008740.0129
speciesBacteroides_intestinalis-0.060.009690.0142
speciesKlebsiella_oxytoca0.060.010.0147
classEpsilonproteobacteria0.0590.01060.0154
orderCampylobacterales0.0590.01060.0154
speciesEggerthella_sp_1_3_56FAA0.0580.01210.0176
genusEnterobacter0.0570.0130.0188
speciesEnterobacteria_phage_HK5440.0570.01350.0195
speciesOscillibacter_unclassified-0.0570.01360.0196
speciesAlistipes_sp_HGB5-0.0570.01380.0198
speciesEnterobacter_aerogenes0.0570.01420.0203
speciesLactobacillus_rhamnosus0.0550.01730.0247
genusLeuconostoc0.0540.02020.0287
speciesBacteroides_barnesiae-0.0530.02230.0316
familyOscillospiraceae-0.0530.02310.0325
genusOscillibacter-0.0530.02310.0325
speciesCoprobacillus_sp_29_10.0520.02370.0333
speciesLactobacillus_plantarum0.0520.02480.0347
familyMyoviridae0.0510.0260.0363
speciesBacteroides_dorei-0.0510.02610.0363
speciesOdoribacter_laneus-0.0510.02810.039
familySiphoviridae-0.0490.03350.0464
speciesBacteroides_vulgatus0.0490.0340.0469
speciesLactococcus_phage_phi7-0.0480.03780.052
speciesHoldemania_unclassified-0.0470.04340.0595
genusActinobacillus0.0470.04410.0602
speciesActinobacillus_unclassified0.0470.04410.0602
speciesKlebsiella_phage_KP36-0.0460.0470.0639
speciesBacteroides_faecis-0.0460.04810.0652
speciesLactococcus_phage_jm2-0.0460.04830.0653
genusMyoviridae_noname0.0450.04990.0673
genusErysipelotrichaceae_noname0.0450.05180.0697
speciesBacteroides_salanitronis-0.0450.0540.0724
genusHoldemania0.0440.05490.0734
speciesPrevotella_bivia0.0440.05630.0751
speciesLactobacillus_delbrueckii0.0440.05820.0774
speciesAcidaminococcus_intestini0.0430.06040.0801
speciesAcidaminococcus_unclassified0.0430.06060.0801
speciesAcidaminococcus_fermentans-0.0430.06380.0841
speciesBacteroides_oleiciplenus0.0430.06540.086
speciesAlistipes_unclassified0.0420.06650.0872
speciesMegasphaera_unclassified0.0420.06960.091
genusSutterellaceae_unclassified-0.0420.06990.0911
speciesCoprobacillus_sp_D60.0420.07230.094
speciesStreptococcus_phage_Sfi210.0410.07280.0944
speciesLactococcus_phage_P680-0.0410.0760.0983
speciesTuricibacter_sanguinis-0.040.08650.112
speciesLactobacillus_casei_paracasei0.0390.09160.118
speciesHaemophilus_sputorum0.0390.09180.118
speciesLactococcus_garvieae0.0380.09680.124
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0380.0980.125
speciesBacteroides_sp_4_3_47FAA-0.0380.09850.125
phylumViruses_noname-0.0360.1230.156
classViruses_noname-0.0360.1230.156
familySuccinivibrionaceae-0.0350.1260.159
speciesLactobacillus_acidophilus-0.0350.1330.167
genusTunalikevirus-0.0350.1350.169
genusSuccinatimonas-0.0340.1380.172
speciesSuccinatimonas_hippei-0.0340.1380.172
genusAcidaminococcus0.0340.1420.177
speciesSutterella_parvirubra0.0340.1440.179
speciesLachnospiraceae_bacterium_5_1_63FAA0.0340.1450.18
classBacteroidia0.0330.1580.195
orderBacteroidales0.0330.1580.195
phylumBacteroidetes0.0330.1590.195
speciesWeissella_confusa0.0320.1690.207
speciesPeptostreptococcus_anaerobius0.0310.1740.213
orderCaudovirales-0.0310.180.219
classDeltaproteobacteria-0.0310.1810.219
orderDesulfovibrionales-0.0310.1810.219
familyDesulfovibrionaceae-0.0310.1810.219
speciesDialister_invisus0.030.1880.227
speciesLachnospiraceae_bacterium_1_1_57FAA0.0290.210.253
speciesRoseburia_unclassified-0.0290.2150.258
familyStaphylococcaceae0.0280.230.276
speciesParabacteroides_sp_20_3-0.0270.2390.286
speciesPropionibacterium_freudenreichii-0.0270.2480.296
speciesBilophila_wadsworthia0.0270.250.297
speciesPorphyromonas_uenonis0.0260.2610.31
orderCoriobacteriales-0.0260.2690.317
familyCoriobacteriaceae-0.0260.2690.317
speciesBacteroides_sp_3_1_190.0250.2710.319
speciesBacteroides_xylanisolvens0.0250.2810.33
genusSlackia0.0250.2830.331
speciesBacteroides_coprocola-0.0250.2830.331
genusParabacteroides0.0250.2890.337
speciesMegasphaera_elsdenii-0.0240.2940.342
speciesParabacteroides_johnsonii-0.0240.30.348
genusAcidaminococcaceae_unclassified-0.0230.3290.381
genusPorphyromonas-0.0220.3410.394
genusBilophila0.020.3910.45
genusLambdalikevirus0.020.3980.456
speciesBacteroides_nordii-0.020.3980.456
speciesOdoribacter_unclassified-0.0190.4030.461
genusDialister-0.0190.4040.461
speciesPorphyromonas_asaccharolytica-0.0190.4050.461
speciesBacteroides_plebeius-0.0190.4090.464
speciesBilophila_unclassified0.0180.4320.489
speciesLactobacillus_reuteri0.0170.4580.517
genusStaphylococcus0.0170.4630.522
orderViruses_noname-0.0170.4680.523
familyViruses_noname0.0170.4680.523
genusViruses_noname0.0170.4680.523
speciesBifidobacterium_bifidum-0.0170.470.524
speciesStreptococcus_thermophilus-0.0160.4810.535
speciesLactococcus_phage_bIL67-0.0160.4940.548
speciesRuminococcus_sp_5_1_39BFAA-0.0160.4950.548
speciesOscillibacter_sp_KLE_17280.0150.5130.567
genusBifidobacterium-0.0150.5150.568
genusLactococcus0.0150.5190.571
speciesPrevotella_stercorea0.0150.5220.573
speciesParabacteroides_goldsteinii-0.0150.530.58
speciesBacteroides_sp_1_1_6-0.0130.5640.616
classNegativicutes0.0130.5710.621
orderSelenomonadales0.0130.5710.621
speciesLeuconostoc_lactis0.0120.5990.65
orderBifidobacteriales-0.0110.6260.676
familyBifidobacteriaceae-0.0110.6260.676
familyLachnospiraceae-0.0110.6350.684
speciesBacteroides_clarus0.0110.6360.684
speciesOscillibacter_sp_KLE_17450.010.6730.722
genusSiphoviridae_noname-0.0090.7020.751
speciesBacteroides_fluxus0.0080.7230.772
familyPodoviridae0.0070.7460.795
speciesHoldemania_filiformis-0.0070.7660.814
speciesRuminococcus_sp_JC3040.0060.7840.832
speciesParabacteroides_distasonis0.0060.7860.832
speciesLactococcus_lactis0.0060.7910.835
orderAeromonadales0.0050.8130.857
speciesBacteroides_massiliensis0.0050.8160.858
speciesBacteroides_salyersiae-0.0050.820.86
phylumActinobacteria0.0050.8380.875
classActinobacteria0.0050.8380.875
phylumSynergistetes-0.0040.8550.885
classSynergistia-0.0040.8550.885
orderSynergistales-0.0040.8550.885
familySynergistaceae-0.0040.8550.885
genusPropionibacterium0.0040.8580.886
genusGordonibacter-0.0030.880.905
speciesGordonibacter_pamelaeae-0.0030.880.905
speciesBifidobacterium_animalis-0.0030.8920.915
speciesBifidobacterium_longum0.0030.9070.929
speciesBacteroides_sp_2_1_22-0.0020.9360.954
speciesMegamonas_funiformis0.0020.9370.954
speciesLactobacillus_sanfranciscensis0.0020.9380.954
familyPropionibacteriaceae-0.0020.9440.958
speciesSlackia_piriformis-0.0010.9520.961
speciesHaemophilus_parainfluenzae0.0010.9550.961
orderPasteurellales0.0010.9560.961
familyPasteurellaceae0.0010.9560.961
genusHaemophilus0.0010.9590.961
genusPyramidobacter-0.0010.9610.961
speciesPyramidobacter_piscolens-0.0010.9610.961
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01069454639020.00277331385781.02955352792e-0720867.00729
Crohns diseaseSpain17660.029146714980.002995731963632.33555559704e-07910.302577
ObesityDenmark1691230.001359289968030.0008142384811130.0889786972625683322.4688
Colorectal cancerAustria64350.01391669629050.01256398600660.157376941557708223.9613
Type II diabetesChina1831850.009484544305770.006853790630590.1874340081991288442.5791
Rheumatoid arthritisChina127980.005841024585660.006422601807970.2912898211261190839.7105
Ulcerative colitisSpain78660.004437057247250.002995731963630.6071708421832176571.7985
Type II diabetesDenmark752770.001051565029060.001002876475450.6227291170322308475.6679
Type II diabetesSweden53920.002048385676050.00237555105750.9260631140292758893.4236
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382