MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-27 13:56:37 PST
Job id & description: 2143, dec32t
Query type: protein
Count queries & homologs: 32, 32
Min % identity & max e-value: 98%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0260_GL0041318440503CompleteK01592COG0076unknownunknown100.0100.0100.0
521000_PROVRETT479046CompleteK01580COG0076ProteobacteriaProvidencia100.0100.0100.0
DLM012_GL0046122524085CompleteK01580COG0076FirmicutesEnterococcus100.0100.0100.0
DOF012_GL0002350528470CompleteK01580COG0076unknownunknown100.0100.0100.0
V1_UC38546922CompleteK01580COG0076FirmicutesEnterococcus100.0100.0100.0
MH0277_GL0036623525212CompleteK01580COG0076FirmicutesEnterococcus100.0100.0100.0
T2D_31A547268CompleteK01580COG0076FirmicutesLactobacillus100.0100.0100.0
529507_PMI1209559499CompleteK01580COG0076ProteobacteriaProteus100.0100.0100.0
MH0277_GL0049368536501CompleteK01580COG0076FirmicutesEnterococcus100.0100.0100.0
DLM027_GL0005635556459CompleteK01580COG0076unknownunknown100.0100.0100.0
ED15A_GL00114331018552CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0095_GL0064853953582CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0293_GL0068848954686CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0075_GL0038504968212CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0126_GL0091370978844CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0141_GL0086842989062CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0333_GL00000111000106CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0403_GL00713321128241CompleteK13745COG0076unknownunknown100.0100.0100.0
V1_CD221374892Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
809635352_stool11501829CompleteK01592COG0076unknownunknown100.0100.0100.0
MH0409_GL00681631556326Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
O2_CD11619272CompleteK01592COG0076unknownunknown100.0100.0100.0
339860_Msp1750555CompleteK01592COG0076EuryarchaeotaMethanosphaera100.0100.0100.0
O2_UC411775512Lack 5'-endK01592COG0076EuryarchaeotaMethanobrevibacter100.0100.0100.0
MH0293_GL00161791782496CompleteK01592COG0076EuryarchaeotaMethanobrevibacter100.0100.0100.0
158337416_stool12573040Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
MH0437_GL01343982931450Lack both endsK13745COG0076unknownunknown100.0100.0100.0
763840445_stool23133612Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0257_GL00016014130345Lack both endsunknownCOG0076unknownunknown100.0100.0100.0
MH0169_GL00933024434067Lack both endsK00839COG0075unknownunknown100.0100.0100.0
MH0319_GL01534934601742Lack both endsK01580COG0076unknownunknown100.0100.0100.0
763840445_stool24665620Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesMethanobrevibacter_smithii0.6426.82e-2183.22e-215
classMethanobacteria0.6392.74e-2153.23e-213
orderMethanobacteriales0.6392.74e-2153.23e-213
familyMethanobacteriaceae0.6392.74e-2153.23e-213
genusMethanobrevibacter0.6361.9e-2121.79e-210
phylumEuryarchaeota0.6251.71e-2031.35e-201
speciesMethanobrevibacter_unclassified0.4424.24e-902.86e-88
phylumBacteroidetes-0.3883.9e-681.86e-66
classBacteroidia-0.3883.94e-681.86e-66
orderBacteroidales-0.3883.94e-681.86e-66
familyBacteroidaceae-0.3529.72e-563.82e-54
genusBacteroides-0.3529.72e-563.82e-54
familyEnterococcaceae0.3452.81e-531.02e-51
genusEnterococcus0.3443.65e-531.23e-51
genusSubdoligranulum0.3183.25e-451.02e-43
speciesSubdoligranulum_unclassified0.3169.58e-452.83e-43
speciesEnterococcus_faecium0.3137.68e-442.13e-42
phylumFirmicutes0.3121.35e-433.54e-42
speciesEubacterium_siraeum0.3121.51e-433.75e-42
genusOlsenella0.2916.4e-381.51e-36
speciesOlsenella_unclassified0.2892.34e-375.26e-36
classErysipelotrichia0.285.03e-359.89e-34
orderErysipelotrichales0.285.03e-359.89e-34
familyErysipelotrichaceae0.285.03e-359.89e-34
classClostridia0.2796.88e-351.25e-33
orderClostridiales0.2796.88e-351.25e-33
genusErysipelotrichaceae_noname0.2741.5e-332.62e-32
genusMethanosphaera0.2733.25e-335.29e-32
speciesMethanosphaera_stadtmanae0.2733.25e-335.29e-32
speciesCoprococcus_catus0.2691.92e-323.02e-31
familyRuminococcaceae0.2629.29e-311.41e-29
genusCoprococcus0.2611.65e-302.43e-29
orderCoriobacteriales0.2595.08e-307.05e-29
familyCoriobacteriaceae0.2595.08e-307.05e-29
speciesEnterococcus_faecalis0.2571.61e-292.17e-28
speciesCollinsella_aerofaciens0.2538.26e-291.08e-27
genusCollinsella0.2513.69e-284.71e-27
genusDorea0.255.04e-286.26e-27
speciesDorea_longicatena0.2463.24e-273.92e-26
speciesRuminococcus_obeum0.2414.26e-265.03e-25
phylumActinobacteria0.2381.78e-252e-24
classActinobacteria0.2381.78e-252e-24
speciesBacteroides_ovatus-0.2381.97e-252.16e-24
speciesEubacterium_biforme0.2372.27e-252.44e-24
speciesAnaerotruncus_unclassified0.2323.17e-243.32e-23
phylumVerrucomicrobia0.2214.82e-224.46e-21
classVerrucomicrobiae0.2214.82e-224.46e-21
orderVerrucomicrobiales0.2214.82e-224.46e-21
familyVerrucomicrobiaceae0.2214.82e-224.46e-21
genusAkkermansia0.2214.82e-224.46e-21
speciesAkkermansia_muciniphila0.2214.82e-224.46e-21
speciesStreptococcus_thermophilus0.2191.07e-219.71e-21
speciesCoprococcus_comes0.2154.4e-213.92e-20
orderLactobacillales0.2155.7e-214.98e-20
classBacilli0.2149.83e-218.37e-20
speciesErysipelotrichaceae_bacterium_21_30.2149.93e-218.37e-20
speciesButyrivibrio_crossotus0.2121.9e-201.57e-19
speciesBifidobacterium_adolescentis0.2122.2e-201.79e-19
speciesEubacterium_hallii0.2113.29e-202.63e-19
genusButyrivibrio0.213.91e-203.08e-19
genusFlavonifractor-0.2053.54e-192.69e-18
speciesFlavonifractor_plautii-0.2053.54e-192.69e-18
familyLachnospiraceae0.2036.43e-194.82e-18
familyOxalobacteraceae0.2011.74e-181.28e-17
genusOxalobacter0.22.63e-181.88e-17
speciesOxalobacter_formigenes0.22.63e-181.88e-17
genusMitsuokella0.1994.3e-183.03e-17
orderBifidobacteriales0.1986.33e-184.33e-17
familyBifidobacteriaceae0.1986.33e-184.33e-17
speciesMitsuokella_unclassified0.1976.96e-184.69e-17
speciesRuminococcus_champanellensis0.1961.21e-178.04e-17
genusBifidobacterium0.1951.53e-171e-16
speciesCoprococcus_eutactus0.1951.65e-171.07e-16
genusPseudoflavonifractor0.1924.9e-173.08e-16
speciesPseudoflavonifractor_capillosus0.1924.9e-173.08e-16
speciesClostridium_citroniae-0.1873.7e-162.3e-15
speciesAlistipes_senegalensis0.1857.97e-164.89e-15
genusRuminococcus0.1841.09e-156.6e-15
speciesDorea_formicigenerans0.1752.35e-141.4e-13
speciesBacteroides_vulgatus-0.1752.39e-141.41e-13
familyActinomycetaceae0.1743.62e-142.11e-13
speciesBacteroides_thetaiotaomicron-0.1735.3e-143.05e-13
orderActinomycetales0.1728.05e-144.58e-13
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1718.43e-144.74e-13
genusActinomyces0.1682.67e-131.48e-12
speciesClostridium_leptum0.1656.12e-133.36e-12
genusLactococcus0.1656.9e-133.74e-12
familyStreptococcaceae0.1649.2e-134.93e-12
speciesBacteroides_stercoris-0.1621.71e-129.07e-12
speciesLactococcus_lactis0.1621.78e-129.34e-12
speciesRuminococcus_gnavus-0.163.18e-121.65e-11
familyPeptostreptococcaceae0.1594.81e-122.47e-11
speciesRuminococcus_torques0.1585.67e-122.88e-11
familyLactobacillaceae0.1586.21e-123.12e-11
genusDesulfovibrio0.1586.44e-123.2e-11
genusAnaerotruncus0.1578.32e-124.09e-11
genusCatenibacterium0.1578.55e-124.12e-11
speciesCatenibacterium_mitsuokai0.1578.55e-124.12e-11
genusLactobacillus0.1561.31e-116.25e-11
genusBlautia0.1551.58e-117.46e-11
speciesBacteroides_xylanisolvens-0.1532.67e-111.25e-10
speciesBacteroides_pectinophilus0.1524.27e-111.98e-10
speciesClostridium_bolteae-0.1514.65e-112.13e-10
genusStreptococcus0.1515.95e-112.7e-10
speciesRuminococcus_sp_5_1_39BFAA0.156.79e-113.05e-10
speciesLachnospiraceae_bacterium_3_1_46FAA0.1498.94e-113.98e-10
genusBarnesiella0.1471.61e-107.04e-10
speciesBarnesiella_intestinihominis0.1471.61e-107.04e-10
familySiphoviridae0.1471.92e-108.31e-10
phylumViruses_noname0.1452.95e-101.25e-09
classViruses_noname0.1452.95e-101.25e-09
genusLeuconostoc0.1443.88e-101.64e-09
speciesEubacterium_ramulus0.1435.93e-102.48e-09
speciesRuminococcus_bromii0.1418.34e-103.45e-09
speciesPeptostreptococcaceae_noname_unclassified0.1418.87e-103.64e-09
genusPeptostreptococcaceae_noname0.1419.74e-103.96e-09
familyBacteroidales_noname0.141.32e-095.24e-09
genusBacteroidales_noname0.141.32e-095.24e-09
speciesBacteroidales_bacterium_ph80.141.32e-095.24e-09
speciesCoprococcus_sp_ART55_10.1391.4e-095.51e-09
speciesAnaerostipes_hadrus0.1382.02e-097.88e-09
orderCaudovirales0.1372.87e-091.11e-08
classBetaproteobacteria-0.1363.6e-091.38e-08
genusParabacteroides-0.1354.41e-091.68e-08
speciesEubacterium_cylindroides0.1354.65e-091.76e-08
genusAdlercreutzia0.1354.73e-091.76e-08
speciesAdlercreutzia_equolifaciens0.1354.73e-091.76e-08
orderBurkholderiales-0.1337.62e-092.81e-08
speciesBifidobacterium_longum0.1329.74e-093.56e-08
speciesLactobacillus_rhamnosus0.1311.38e-085.01e-08
speciesBifidobacterium_animalis0.1292.22e-088e-08
genusAnaerostipes0.1282.81e-081e-07
genusC2likevirus0.1273.56e-081.26e-07
speciesDesulfovibrio_desulfuricans0.1264.96e-081.75e-07
speciesStreptococcus_parasanguinis0.1255.88e-082.06e-07
speciesClostridium_symbiosum-0.1256.42e-082.23e-07
speciesC2likevirus_unclassified0.1247.97e-082.75e-07
speciesLachnospiraceae_bacterium_7_1_58FAA0.1239.81e-083.36e-07
speciesClostridiales_bacterium_1_7_47FAA-0.1221.26e-074.28e-07
speciesDialister_succinatiphilus0.1211.48e-074.99e-07
familyAcidaminococcaceae0.121.85e-076.19e-07
speciesMegamonas_unclassified-0.1183.41e-071.13e-06
genusMegamonas-0.1173.78e-071.25e-06
genusTuricibacter0.1174.17e-071.37e-06
familySutterellaceae-0.1165.1e-071.66e-06
genusCoprobacter0.1165.48e-071.76e-06
speciesCoprobacter_fastidiosus0.1165.48e-071.76e-06
genusRuminococcaceae_noname0.1156.28e-071.99e-06
speciesRuminococcaceae_bacterium_D160.1156.28e-071.99e-06
speciesTuricibacter_sanguinis0.1156.46e-072.03e-06
speciesErysipelotrichaceae_bacterium_2_2_44A0.1138.67e-072.71e-06
familyEubacteriaceae0.1138.98e-072.79e-06
genusEubacterium0.1139.71e-072.98e-06
speciesLactobacillus_plantarum0.1139.71e-072.98e-06
speciesBacteroides_uniformis-0.1121.11e-063.38e-06
speciesBacteroides_fragilis-0.1121.19e-063.6e-06
speciesLactobacillus_delbrueckii0.1121.26e-063.79e-06
speciesBifidobacterium_dentium0.1111.36e-064.06e-06
speciesAnaerotruncus_colihominis-0.1111.37e-064.07e-06
speciesLactobacillus_vaginalis0.1111.51e-064.45e-06
speciesLactobacillus_oris0.1092.25e-066.6e-06
speciesLactobacillus_casei_paracasei0.1092.52e-067.34e-06
speciesTuricibacter_unclassified0.1082.95e-068.54e-06
speciesFusobacterium_varium-0.1064.74e-061.35e-05
familyFusobacteriaceae-0.1064.75e-061.35e-05
phylumFusobacteria-0.1064.79e-061.35e-05
classFusobacteriia-0.1064.79e-061.35e-05
orderFusobacteriales-0.1064.79e-061.35e-05
genusLachnospiraceae_noname0.1055.14e-061.44e-05
speciesBacteroides_nordii-0.1045.95e-061.65e-05
genusFusobacterium-0.1038.1e-062.24e-05
speciesRoseburia_inulinivorans-0.1038.66e-062.38e-05
speciesDesulfovibrio_piger0.1011.1e-053e-05
genusPropionibacterium0.11.62e-054.39e-05
speciesOdoribacter_laneus0.0991.93e-055.21e-05
speciesEscherichia_unclassified0.0991.97e-055.28e-05
genusSiphoviridae_noname0.0982.02e-055.39e-05
speciesRoseburia_hominis0.0982.26e-055.99e-05
speciesClostridium_asparagiforme-0.0982.32e-056.12e-05
genusRoseburia-0.0972.85e-057.47e-05
speciesBifidobacterium_catenulatum0.0963.5e-059.13e-05
speciesStreptococcus_salivarius0.0953.61e-059.36e-05
genusPhascolarctobacterium0.0953.71e-059.52e-05
speciesPhascolarctobacterium_succinatutens0.0953.71e-059.52e-05
speciesLactobacillus_gasseri0.0953.88e-059.9e-05
speciesFusobacterium_mortiferum-0.0935.74e-050.000146
genusSolobacterium0.0926.31e-050.000158
speciesSolobacterium_moorei0.0926.31e-050.000158
speciesRoseburia_unclassified0.0917.76e-050.000194
speciesBifidobacterium_bifidum0.0918.26e-050.000205
speciesMitsuokella_multacida0.099.09e-050.000225
speciesRuminococcus_lactaris0.099.78e-050.00024
speciesPropionibacterium_freudenreichii0.090.0001040.000254
speciesLactococcus_phage_P6800.0890.0001070.00026
familyPropionibacteriaceae0.0890.0001170.000283
familyClostridiales_Family_XI_Incertae_Sedis0.0890.0001210.000291
speciesStreptococcus_vestibularis0.0880.000130.000311
speciesClostridium_bartlettii0.0870.0001560.000372
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0870.0001640.000389
genusPorphyromonas0.0860.0002070.000489
speciesAlistipes_indistinctus0.0850.0002390.000561
speciesErysipelotrichaceae_bacterium_6_1_450.0850.0002410.000563
familyLeuconostocaceae0.0840.0002540.000591
speciesMegamonas_rupellensis-0.0840.0002580.000597
speciesParaprevotella_clara0.0840.0002750.000633
speciesProteus_mirabilis0.0840.0002880.00066
speciesOscillibacter_sp_KLE_1745-0.0830.000320.00073
speciesEubacterium_rectale0.0830.0003280.000744
genusProteus0.0830.000340.000768
genusRothia0.0820.0003710.000834
speciesParaprevotella_unclassified0.0820.0003790.000848
familyMicrococcaceae0.0820.0003960.000882
speciesStreptococcus_gordonii0.0820.0003980.000882
speciesKlebsiella_oxytoca0.0810.0004450.000981
speciesEubacterium_limosum0.0810.0004590.00101
speciesEggerthella_unclassified-0.0810.0004630.00101
speciesParabacteroides_sp_D130.0810.000490.00107
genusParaprevotella0.080.0004990.00108
speciesLactobacillus_fermentum0.080.0004990.00108
speciesPorphyromonas_asaccharolytica0.080.0005190.00111
speciesAlistipes_unclassified0.080.0005390.00115
speciesStreptococcus_anginosus0.080.0005550.00118
speciesClostridium_clostridioforme-0.080.0005760.00122
speciesRothia_mucilaginosa0.0790.0006070.00128
speciesParaprevotella_xylaniphila0.0780.000690.00145
genusPeptostreptococcus0.0780.0007290.00152
speciesStreptococcus_sanguinis0.0770.0009190.00191
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0760.001080.00224
speciesBifidobacterium_pseudocatenulatum-0.0750.001140.00235
speciesParabacteroides_distasonis-0.0740.001290.00265
speciesRuminococcus_callidus0.0740.001430.00292
orderViruses_noname0.0730.001480.00301
genusGordonibacter0.0730.001490.00301
speciesGordonibacter_pamelaeae0.0730.001490.00301
speciesMegamonas_funiformis-0.0730.00150.00301
genusParvimonas0.0730.001510.00302
speciesParvimonas_unclassified0.0730.001520.00303
speciesParabacteroides_sp_20_30.0730.00160.00317
genusEggerthella-0.0730.001620.0032
speciesKlebsiella_pneumoniae-0.0730.00170.00334
genusAcidaminococcus0.0720.001890.0037
speciesPeptostreptococcus_stomatis0.0720.001970.00384
speciesOdoribacter_unclassified0.0710.002030.00394
genusEscherichia0.0710.002280.00441
speciesLactococcus_garvieae0.070.002340.00451
speciesLeuconostoc_lactis0.070.002490.00478
familyBurkholderiales_noname-0.070.002510.0048
speciesClostridium_sp_L2_500.070.002540.00483
genusBurkholderiales_noname-0.070.002580.00487
speciesBurkholderiales_bacterium_1_1_47-0.070.002580.00487
speciesClostridium_nexile-0.0690.002790.00525
speciesLactobacillus_amylovorus0.0690.002820.00528
genusPeptoniphilus0.0680.003370.00629
familyPorphyromonadaceae-0.0680.003460.00643
orderPseudomonadales0.0670.003790.00702
speciesCoprobacillus_unclassified-0.0670.003810.00702
genusPantoea0.0670.003860.00706
speciesPantoea_unclassified0.0670.003860.00706
speciesCoprobacillus_sp_29_10.0660.004260.00776
speciesLactobacillus_ruminis0.0660.004390.00797
familyOscillospiraceae-0.0650.004760.00858
genusOscillibacter-0.0650.004760.00858
speciesBacteroides_oleiciplenus-0.0650.004950.00888
speciesBacteroides_eggerthii0.0650.005070.00906
speciesEscherichia_coli0.0640.005360.00955
speciesMegamonas_hypermegale-0.0640.005380.00955
genusHaemophilus-0.0640.00560.0099
speciesCoprobacillus_sp_D60.0640.005980.0105
speciesHaemophilus_parainfluenzae-0.0640.005980.0105
speciesBacteroides_salanitronis0.0630.006130.0107
genusActinobacillus-0.0630.00630.0109
speciesActinobacillus_unclassified-0.0630.00630.0109
speciesButyrivibrio_unclassified0.0630.006720.0116
genusLambdalikevirus0.0620.007590.0131
genusBilophila-0.0610.008790.0151
speciesStreptococcus_mutans0.060.009250.0158
orderPasteurellales-0.060.009650.0164
familyPasteurellaceae-0.060.009650.0164
speciesBilophila_unclassified-0.060.009840.0166
genusParasutterella-0.060.009940.0167
speciesParasutterella_excrementihominis-0.060.009940.0167
speciesBacteroides_barnesiae0.060.010.0167
genusButyricicoccus0.0590.01030.0171
speciesButyricicoccus_pullicaecorum0.0590.01030.0171
speciesVeillonella_parvula-0.0580.01180.0195
orderEnterobacteriales0.0580.01270.0209
familyEnterobacteriaceae0.0580.01270.0209
speciesLactococcus_phage_bIL670.0570.01390.0228
speciesMegasphaera_elsdenii0.0570.01440.0235
speciesRuminococcus_sp_JC3040.0560.01450.0236
speciesVeillonella_atypica-0.0560.01470.0238
speciesAcidaminococcus_intestini0.0560.0150.0242
genusDialister0.0560.01510.0243
speciesEubacterium_sp_3_1_31-0.0560.01580.0254
speciesCitrobacter_unclassified0.0560.0160.0256
speciesPeptostreptococcus_anaerobius0.0550.01710.0273
speciesCampylobacter_concisus-0.0550.01730.0275
speciesBacteroides_massiliensis-0.0550.01760.0279
familyBacillales_noname0.0550.01780.028
genusGemella0.0550.01780.028
speciesSutterella_wadsworthensis0.0550.01790.0281
speciesVeillonella_dispar-0.0540.01890.0295
genusCitrobacter0.0540.01950.0304
genusKlebsiella-0.0540.020.0311
speciesFusobacterium_ulcerans-0.0540.02020.0313
speciesPrevotella_bivia-0.0530.02160.0333
speciesLachnospiraceae_bacterium_5_1_63FAA0.0520.02340.036
speciesWeissella_cibaria0.0520.02390.0366
speciesVeillonella_unclassified-0.0520.02450.0374
speciesPorphyromonas_uenonis0.0520.02480.0378
orderBacillales0.0520.02490.0378
speciesClostridium_hathewayi-0.0510.02680.0405
genusVeillonella-0.0510.02710.0409
speciesBilophila_wadsworthia-0.050.02930.044
speciesStreptococcus_lutetiensis0.050.02940.0441
speciesStreptococcus_australis0.050.02970.0444
speciesAnaerostipes_unclassified-0.050.03190.0475
speciesHaemophilus_sputorum-0.050.0320.0475
speciesEubacterium_dolichum-0.0490.03270.0484
speciesParabacteroides_goldsteinii0.0490.03310.0488
speciesBacteroides_sp_2_1_22-0.0480.03850.0566
speciesBacteroides_plebeius-0.0480.03910.0573
speciesSubdoligranulum_sp_4_3_54A2FAA0.0470.04050.0592
speciesHaemophilus_paraphrohaemolyticus-0.0470.04260.0621
familyRikenellaceae-0.0470.0430.0623
genusAlistipes-0.0470.0430.0623
speciesOscillibacter_unclassified-0.0470.04410.0637
genusClostridiaceae_noname-0.0460.04620.0662
speciesClostridiaceae_bacterium_JC118-0.0460.04620.0662
speciesParabacteroides_unclassified-0.0460.04630.0662
genusSutterella0.0460.04730.0674
speciesAcidaminococcus_unclassified0.0460.04740.0674
speciesOscillibacter_sp_KLE_1728-0.0460.04790.0679
speciesCitrobacter_freundii0.0450.04930.0697
familyClostridiales_noname-0.0450.05030.0709
speciesAlistipes_sp_HGB50.0450.05190.0728
speciesAlistipes_shahii0.0450.0520.0728
speciesSutterella_parvirubra-0.0450.05310.0742
speciesRoseburia_intestinalis-0.0440.05550.0773
speciesLactobacillus_mucosae0.0440.05850.0812
speciesMegasphaera_unclassified0.0440.05880.0814
speciesEubacterium_eligens0.0430.06270.0865
speciesEubacterium_ventriosum0.0430.06570.0904
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0420.06630.091
genusPyramidobacter-0.0420.06690.0911
speciesPyramidobacter_piscolens-0.0420.06690.0911
speciesBlautia_hydrogenotrophica0.0420.0670.0911
speciesLactobacillus_crispatus0.0420.06880.0933
genusAcidaminococcaceae_unclassified0.0420.07150.0964
speciesBacteroides_sp_1_1_6-0.0420.07150.0964
speciesStreptococcus_infantarius0.0410.07760.104
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.040.08020.108
speciesGemella_morbillorum0.0390.09050.121
classGammaproteobacteria0.0390.0920.123
genusPrevotella-0.0390.09390.125
speciesEnterobacteria_phage_HK5440.0390.09520.126
speciesAlistipes_finegoldii0.0380.09890.131
phylumProteobacteria-0.0370.1070.141
genusCoprobacillus-0.0370.1070.141
genusMorganella0.0370.1090.143
speciesMorganella_morganii0.0370.1090.143
genusOdoribacter0.0370.1120.146
familyStaphylococcaceae0.0370.1130.147
speciesStreptococcus_pasteurianus-0.0360.1160.15
genusMyoviridae_noname-0.0350.1250.161
genusCoriobacteriaceae_noname0.0350.1250.161
speciesAlistipes_sp_AP110.0350.1260.162
speciesLactococcus_phage_phi70.0350.1280.164
speciesClostridium_sp_ATCC_BAA_442-0.0350.1310.168
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0350.1340.171
speciesBacteroides_finegoldii-0.0340.1380.176
speciesStreptococcus_mitis_oralis_pneumoniae0.0340.1390.176
speciesBacteroides_dorei-0.0340.1390.176
genusClostridiales_noname-0.0330.1520.191
speciesBacteroides_sp_3_1_19-0.0330.1520.191
speciesHoldemania_filiformis0.0320.1610.202
speciesBacteroides_salyersiae-0.0320.1640.205
speciesCoriobacteriaceae_bacterium_phI0.0320.1660.207
speciesDorea_unclassified0.0320.1680.209
speciesLachnospiraceae_bacterium_1_1_57FAA0.0320.1680.209
genusStaphylococcus0.0320.1710.212
familyVeillonellaceae-0.0320.1720.213
speciesLachnospiraceae_bacterium_8_1_57FAA0.0310.1860.229
speciesClostridium_perfringens0.030.190.233
speciesAlistipes_onderdonkii0.030.190.233
genusAggregatibacter-0.030.1950.238
speciesCollinsella_tanakaei-0.030.1960.239
speciesBlautia_producta-0.0290.2050.249
speciesPrevotella_buccae-0.0290.2090.254
speciesBacteroides_caccae-0.0290.2150.26
speciesBifidobacterium_angulatum0.0280.230.278
speciesAcidaminococcus_fermentans0.0280.2310.278
genusButyricimonas0.0270.2380.285
speciesButyricimonas_synergistica0.0270.2380.285
familyPodoviridae0.0270.2490.296
classDeltaproteobacteria-0.0270.250.296
orderDesulfovibrionales-0.0270.250.296
familyDesulfovibrionaceae-0.0270.250.296
speciesHoldemania_sp_AP2-0.0260.2670.316
speciesLactobacillus_acidophilus0.0250.2760.325
speciesParabacteroides_johnsonii0.0250.2760.325
speciesLactobacillus_reuteri0.0250.2860.336
speciesBifidobacterium_breve0.0250.2880.337
speciesAggregatibacter_segnis-0.0240.3040.355
phylumSynergistetes-0.0240.3070.355
classSynergistia-0.0240.3070.355
orderSynergistales-0.0240.3070.355
familySynergistaceae-0.0240.3070.355
speciesMegasphaera_micronuciformis-0.020.3780.436
genusSutterellaceae_unclassified-0.020.3830.441
genusSlackia0.020.3880.446
speciesPrevotella_stercorea-0.0180.4260.487
speciesOdoribacter_splanchnicus0.0180.4260.487
familyMyoviridae-0.0180.4270.487
genusMegasphaera0.0180.4280.487
speciesLactobacillus_salivarius0.0180.4420.501
speciesAlistipes_putredinis-0.0170.450.509
speciesErysipelotrichaceae_bacterium_3_1_53-0.0170.4560.515
speciesKlebsiella_sp_MS_92_3-0.0170.4570.515
speciesCollinsella_unclassified0.0170.4590.516
speciesPrevotella_copri-0.0160.4830.542
speciesBacteroides_coprocola-0.0150.5060.566
speciesLactococcus_phage_jm20.0150.5070.566
familyClostridiaceae0.0150.5130.571
speciesEggerthella_sp_1_3_56FAA-0.0150.5140.571
speciesFusobacterium_nucleatum0.0150.5230.579
genusTunalikevirus-0.0140.5340.588
genusClostridium0.0140.5340.588
genusFaecalibacterium-0.0140.5360.588
speciesFaecalibacterium_prausnitzii-0.0140.5360.588
speciesKlebsiella_phage_KP36-0.0140.5440.596
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0140.5580.61
speciesBacteroides_sp_4_3_47FAA-0.0130.5610.612
speciesLactobacillus_sanfranciscensis-0.0130.5670.617
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0130.5830.633
speciesWeissella_confusa-0.0120.5960.645
classNegativicutes0.0120.610.657
orderSelenomonadales0.0120.610.657
speciesBacteroides_intestinalis-0.0120.6140.66
familyViruses_noname0.0110.6320.676
genusViruses_noname0.0110.6320.676
speciesEggerthella_lenta0.0110.6370.68
speciesKlebsiella_unclassified0.010.6580.699
speciesCollinsella_intestinalis-0.010.6580.699
speciesLactococcus_phage_936_sensu_lato-0.0090.6890.731
speciesBacteroides_faecis0.0090.710.751
genusEnterobacter-0.0080.7160.756
speciesBacteroides_cellulosilyticus-0.0080.7190.757
speciesSlackia_piriformis-0.0080.720.757
speciesEnterobacter_cloacae-0.0080.7290.765
speciesClostridium_sp_KLE_1755-0.0080.7340.768
speciesClostridium_spiroforme0.0080.7430.776
speciesHoldemania_unclassified0.0070.7640.796
orderAeromonadales0.0060.7990.831
genusCampylobacter-0.0050.8130.843
genusSuccinatimonas-0.0040.860.888
speciesSuccinatimonas_hippei-0.0040.860.888
speciesParabacteroides_merdae0.0040.870.897
speciesBacteroides_coprophilus-0.0030.8910.916
speciesBacteroides_clarus-0.0030.8930.916
genusWeissella-0.0030.90.921
familySuccinivibrionaceae-0.0020.920.94
speciesDialister_invisus-0.0020.9390.957
classEpsilonproteobacteria0.0020.9440.958
orderCampylobacterales0.0020.9440.958
speciesStreptococcus_phage_Sfi21-0.0020.9480.96
speciesClostridium_ramosum-0.0010.9550.965
familyCampylobacteraceae-0.0010.9580.966
genusHoldemania-0.0010.9640.97
speciesEnterobacter_aerogenes-0.0010.970.974
speciesBacteroides_fluxus0.0010.9820.983
familyPrevotellaceae0.0010.9830.983
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.002549225885560.0006470586026260.0026567885548423297.69688
Liver cirrhosisChina1201140.000487711896980.0005996084955620.01619056216181179739.6285
ObesityDenmark1691230.00209441850810.00248915747420.0189152659679312010.2594
Type II diabetesDenmark752770.00252068140070.002166111938490.0458844674273698022.88
Colorectal cancerAustria64350.01432214221160.006345834410990.0542745533952304910.316
Crohns diseaseSpain17660.0007005007319170.007111389228960.1197238975961444848.0399
Ulcerative colitisSpain78660.003287992998220.007111389228960.3708272936681591552.5005
Rheumatoid arthritisChina127980.003288167378170.002034894695840.6713167683662164172.1679
Type II diabetesSweden53920.008081895310820.009030673602980.7185724654132183773.9485
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382