MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-27 13:57:20 PST
Job id & description: 2144, dec37a
Query type: protein
Count queries & homologs: 37, 37
Min % identity & max e-value: 98%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0252_GL0185036833595CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0203_GL0100465954219CompleteK01593COG0076unknownunknown100.0100.0100.0
SZEY_81A947285Lack 3'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
MH0188_GL0107376989288CompleteK01593COG0076unknownunknown100.0100.0100.0
V1_FI111012287CompleteK13745COG0076unknownunknown100.0100.0100.0
1045856_EcWSU1977962CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
1125630_KPHS972814CompleteK13745COG0076ProteobacteriaKlebsiella100.0100.0100.0
545696_HOLDEFILI1019564CompleteK13745COG0076FirmicutesHoldemania100.0100.0100.0
NLM027_GL0057631987209CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
1006551_KOX988111CompleteK13745COG0076ProteobacteriaKlebsiella100.0100.0100.0
469595_CSAG988211CompleteK13745COG0076ProteobacteriaCitrobacter100.0100.0100.0
V1_UC21996800CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
SZEY_40A997380CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
T2D_108A997441CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
V1_UC351046061CompleteK01593COG0076unknownunknown100.0100.0100.0
HT14A_GL00182691035762CompleteK13745COG0076unknownunknown100.0100.0100.0
O2_CD31062255CompleteK01593COG0076unknownunknown100.0100.0100.0
MH0239_GL00861921072049CompleteK01618COG0076unknownunknown100.0100.0100.0
MH0433_GL02014871050352CompleteK13745COG0076unknownunknown100.0100.0100.0
O2_CD31073535CompleteK01618COG0076unknownunknown100.0100.0100.0
O2_CD31079212CompleteK01593COG0076unknownunknown100.0100.0100.0
T2D_62A1131089CompleteK01618COG0076unknownunknown100.0100.0100.0
MH0229_GL02094801268031Lack 5'-endK01593COG0076unknownunknown100.0100.0100.0
MH0370_GL00330992148555Lack 5'-endK01593COG0076unknownunknown100.0100.0100.0
MH0233_GL01140072330195CompleteK01593COG0076unknownunknown100.0100.0100.0
V1_FI202450556Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
V1_UC32556599Lack 5'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
158499257_stool22660258Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0433_GL02231572868083Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
NOM026_GL00135162873095Lack 3'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
159814214_stool23133286Lack 5'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
MH0370_GL00552123285876Lack 3'-endK01593COG0076unknownunknown100.0100.0100.0
T2D_76A3628642Lack 3'-endK13745COG0076ProteobacteriaKlebsiella100.0100.0100.0
T2D_59A3628483CompleteK13745COG0076unknownunknown100.0100.0100.0
V1_UC133814851Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
O2_UC483930102CompleteK01618COG0076unknownunknown100.0100.0100.0
T2D_132A4294395Lack 5'-endK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesKlebsiella_pneumoniae0.461.31e-986.18e-96
genusKlebsiella0.4593.3e-987.79e-96
orderEnterobacteriales0.3941.3e-701.53e-68
familyEnterobacteriaceae0.3941.3e-701.53e-68
classGammaproteobacteria0.3794.28e-654.04e-63
genusEnterobacter0.3781.41e-641.11e-62
speciesEnterobacter_cloacae0.3782.01e-641.36e-62
phylumProteobacteria0.3284.52e-482.67e-46
speciesCitrobacter_freundii0.2852.87e-361.51e-34
speciesCitrobacter_unclassified0.2798.4e-353.96e-33
genusEscherichia0.2791.16e-344.98e-33
genusCitrobacter0.2741.23e-334.84e-32
speciesKlebsiella_oxytoca0.2611.45e-305.26e-29
speciesEscherichia_coli0.2571.52e-295.12e-28
speciesEscherichia_unclassified0.2463.96e-271.25e-25
genusPantoea0.2112.44e-206.77e-19
speciesPantoea_unclassified0.2112.44e-206.77e-19
genusBlautia0.2071.49e-193.91e-18
classBacilli0.2071.69e-194.2e-18
orderLactobacillales0.2061.88e-194.44e-18
familyStreptococcaceae0.2044.44e-199.98e-18
familyLeuconostocaceae0.1986.43e-181.38e-16
genusStreptococcus0.1951.88e-173.86e-16
genusClostridium0.1942.27e-174.46e-16
familyClostridiaceae0.1933.77e-177.12e-16
speciesClostridium_symbiosum0.1873.37e-166.12e-15
speciesRuminococcus_gnavus0.1873.57e-166.24e-15
speciesClostridium_hathewayi0.1865.25e-168.85e-15
speciesClostridium_bolteae0.1865.95e-169.68e-15
speciesStreptococcus_salivarius0.1856.2e-169.75e-15
genusAggregatibacter0.1857.29e-161.11e-14
genusWeissella0.1857.79e-161.15e-14
speciesClostridium_perfringens0.1812.7e-153.86e-14
speciesErysipelotrichaceae_bacterium_21_30.1796.79e-159.43e-14
speciesWeissella_confusa0.1771.18e-141.59e-13
speciesEnterobacter_aerogenes0.1771.33e-141.74e-13
familyBacillales_noname0.1743.04e-143.78e-13
genusGemella0.1743.04e-143.78e-13
speciesAggregatibacter_segnis0.1744e-144.84e-13
genusFlavonifractor0.1719.66e-141.11e-12
speciesFlavonifractor_plautii0.1719.66e-141.11e-12
orderBacillales0.171.36e-131.53e-12
genusEggerthella0.1691.69e-131.81e-12
speciesStreptococcus_australis0.1691.69e-131.81e-12
speciesLactococcus_garvieae0.1664.33e-134.54e-12
phylumBacteroidetes-0.1656.48e-136.38e-12
classBacteroidia-0.1656.49e-136.38e-12
orderBacteroidales-0.1656.49e-136.38e-12
familyPeptostreptococcaceae0.1657.39e-137.12e-12
speciesEggerthella_unclassified0.1658.19e-137.73e-12
speciesStreptococcus_anginosus0.1649.05e-138.38e-12
speciesStreptococcus_mitis_oralis_pneumoniae0.1631.48e-121.34e-11
speciesLachnospiraceae_bacterium_1_4_56FAA0.1621.56e-121.39e-11
genusFusobacterium0.1612.39e-122.09e-11
speciesBifidobacterium_dentium0.1612.6e-122.23e-11
orderActinomycetales0.1586.16e-125.19e-11
familyFusobacteriaceae0.1561.08e-118.94e-11
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1551.69e-111.38e-10
genusHoldemania0.1551.72e-111.38e-10
speciesAnaerotruncus_colihominis0.1551.84e-111.45e-10
phylumFusobacteria0.1541.96e-111.47e-10
classFusobacteriia0.1541.96e-111.47e-10
orderFusobacteriales0.1541.96e-111.47e-10
familyEnterococcaceae0.1542.35e-111.73e-10
speciesWeissella_cibaria0.1532.79e-112.03e-10
genusEnterococcus0.1532.91e-112.08e-10
genusGordonibacter0.1533.12e-112.17e-10
speciesGordonibacter_pamelaeae0.1533.12e-112.17e-10
genusSolobacterium0.1524.17e-112.81e-10
speciesSolobacterium_moorei0.1524.17e-112.81e-10
classErysipelotrichia0.1524.42e-112.86e-10
orderErysipelotrichales0.1524.42e-112.86e-10
familyErysipelotrichaceae0.1524.42e-112.86e-10
familyActinomycetaceae0.1514.8e-113.06e-10
speciesKlebsiella_unclassified0.1481.16e-107.3e-10
speciesFusobacterium_nucleatum0.1481.3e-108.07e-10
genusActinomyces0.1481.46e-108.95e-10
genusCoprobacillus0.1471.49e-109.02e-10
genusPeptostreptococcaceae_noname0.1462.14e-101.28e-09
speciesHaemophilus_sputorum0.1434.76e-102.81e-09
speciesRuminococcus_torques0.1435.19e-103.02e-09
speciesClostridium_citroniae0.1426.52e-103.75e-09
speciesErysipelotrichaceae_bacterium_2_2_44A0.1418.07e-104.59e-09
speciesKlebsiella_sp_MS_92_30.1419.1e-105.11e-09
familyClostridiales_noname0.1419.21e-105.11e-09
speciesLactobacillus_salivarius0.1411.04e-095.71e-09
speciesHaemophilus_paraphrohaemolyticus0.141.2e-096.51e-09
speciesClostridium_bartlettii0.141.28e-096.87e-09
speciesStreptococcus_sanguinis0.141.36e-097.18e-09
speciesHoldemania_filiformis0.141.37e-097.18e-09
speciesMegasphaera_micronuciformis0.1382.13e-091.1e-08
speciesClostridium_nexile0.1372.73e-091.4e-08
genusActinobacillus0.1354.19e-092.1e-08
speciesActinobacillus_unclassified0.1354.19e-092.1e-08
speciesBlautia_hydrogenotrophica0.1345.51e-092.74e-08
speciesStreptococcus_parasanguinis0.1337.2e-093.54e-08
speciesClostridium_ramosum0.1329.2e-094.48e-08
genusPseudoflavonifractor0.1292.01e-089.58e-08
speciesPseudoflavonifractor_capillosus0.1292.01e-089.58e-08
speciesClostridium_asparagiforme0.1282.65e-081.25e-07
speciesClostridiales_bacterium_1_7_47FAA0.1282.95e-081.38e-07
speciesSubdoligranulum_sp_4_3_54A2FAA0.1273.48e-081.61e-07
genusLactococcus0.1264.49e-082.06e-07
speciesStreptococcus_vestibularis0.1239.55e-084.33e-07
genusErysipelotrichaceae_noname0.1231.03e-074.63e-07
genusPeptostreptococcus0.1211.41e-076.26e-07
speciesCoprobacillus_unclassified0.1211.42e-076.26e-07
speciesRothia_mucilaginosa0.1211.51e-076.6e-07
genusLeuconostoc0.1211.54e-076.61e-07
speciesCampylobacter_concisus0.1211.54e-076.61e-07
speciesStreptococcus_infantarius0.1211.57e-076.68e-07
speciesPrevotella_buccae0.121.94e-078.18e-07
speciesPeptostreptococcus_stomatis0.1173.49e-071.46e-06
genusRuminococcaceae_noname0.1165.28e-072.17e-06
speciesRuminococcaceae_bacterium_D160.1165.28e-072.17e-06
familyMicrococcaceae0.1156.61e-072.69e-06
genusRothia0.1147.02e-072.83e-06
speciesOdoribacter_splanchnicus-0.1148.15e-073.26e-06
speciesEggerthella_lenta0.1139.98e-073.96e-06
orderCoriobacteriales0.1121.2e-064.68e-06
familyCoriobacteriaceae0.1121.2e-064.68e-06
speciesEnterococcus_faecalis0.1111.46e-065.65e-06
genusCampylobacter0.111.68e-066.45e-06
speciesEnterococcus_faecium0.111.93e-067.35e-06
genusAdlercreutzia0.112.01e-067.53e-06
speciesAdlercreutzia_equolifaciens0.112.01e-067.53e-06
speciesStreptococcus_gordonii0.112.04e-067.58e-06
familyLactobacillaceae0.1092.14e-067.89e-06
phylumActinobacteria0.1092.32e-068.42e-06
classActinobacteria0.1092.32e-068.42e-06
familyMyoviridae0.1073.33e-061.2e-05
speciesLeuconostoc_lactis0.1073.41e-061.22e-05
genusLactobacillus0.1073.89e-061.38e-05
familyCampylobacteraceae0.1064.18e-061.47e-05
speciesClostridium_clostridioforme0.1064.42e-061.55e-05
speciesVeillonella_parvula0.1064.54e-061.58e-05
speciesLachnospiraceae_bacterium_6_1_63FAA0.1054.85e-061.66e-05
genusOdoribacter-0.1054.86e-061.66e-05
genusLachnospiraceae_noname0.1046.26e-062.13e-05
speciesBacteroides_uniformis-0.1046.91e-062.33e-05
speciesErysipelotrichaceae_bacterium_6_1_450.1046.97e-062.33e-05
classEpsilonproteobacteria0.1047.06e-062.33e-05
orderCampylobacterales0.1047.06e-062.33e-05
orderBurkholderiales-0.1037.7e-062.52e-05
familySutterellaceae-0.1038.36e-062.72e-05
genusProteus0.1011.16e-053.75e-05
speciesBlautia_producta0.1011.17e-053.76e-05
familyBacteroidaceae-0.1011.25e-053.96e-05
genusBacteroides-0.1011.25e-053.96e-05
genusParabacteroides-0.11.47e-054.63e-05
genusButyricicoccus0.0991.86e-055.7e-05
genusMorganella0.0991.86e-055.7e-05
speciesButyricicoccus_pullicaecorum0.0991.86e-055.7e-05
speciesMorganella_morganii0.0991.86e-055.7e-05
speciesLachnospiraceae_bacterium_2_1_58FAA0.0972.51e-057.64e-05
speciesLachnospiraceae_bacterium_1_1_57FAA0.0972.65e-058.02e-05
genusVeillonella0.0962.92e-058.78e-05
speciesEubacterium_limosum0.0963.09e-059.23e-05
speciesBacteroides_vulgatus-0.0963.12e-059.26e-05
familyPorphyromonadaceae-0.0963.18e-059.38e-05
speciesBacteroides_ovatus-0.0953.57e-050.000105
speciesBifidobacterium_longum0.0954.11e-050.00012
speciesLactococcus_lactis0.0954.21e-050.000122
classBetaproteobacteria-0.0944.69e-050.000135
speciesBilophila_wadsworthia0.0944.91e-050.00014
speciesRuminococcus_obeum0.0935.42e-050.000154
speciesCoprobacillus_sp_D60.0935.66e-050.00016
speciesFusobacterium_ulcerans0.0926.29e-050.000177
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0926.91e-050.000193
speciesMegamonas_unclassified0.0927.13e-050.000198
genusMegamonas0.0917.5e-050.000207
speciesLachnospiraceae_bacterium_5_1_57FAA0.0918.64e-050.000237
speciesAlistipes_shahii-0.099.14e-050.000249
speciesGemella_morbillorum0.0890.0001070.00029
speciesVeillonella_unclassified0.0890.0001180.000318
speciesEubacterium_sp_3_1_310.0890.0001260.000338
speciesStreptococcus_mutans0.0880.000130.000347
genusSutterella-0.0880.000140.000371
speciesSutterella_wadsworthensis-0.0870.0001560.000411
genusMegasphaera0.0870.0001580.000414
familyClostridiales_Family_XI_Incertae_Sedis0.0870.0001740.000454
genusClostridiales_noname0.0850.0002210.000573
speciesVeillonella_dispar0.0840.000290.000748
speciesBacteroides_fragilis0.0830.000340.000872
speciesEnterobacteria_phage_HK5440.0820.0003950.00101
genusButyrivibrio-0.0820.00040.00102
familyLachnospiraceae0.0810.0004240.00107
orderPasteurellales0.0810.0004450.00111
familyPasteurellaceae0.0810.0004450.00111
genusParvimonas0.080.0004980.00124
speciesParvimonas_unclassified0.080.0005090.00126
genusMyoviridae_noname0.080.0005470.00134
speciesLactobacillus_plantarum0.080.0005570.00136
speciesHaemophilus_parainfluenzae0.080.0005720.00139
speciesBacteroides_dorei-0.0790.0006260.00152
genusHaemophilus0.0790.0006680.00161
speciesAnaerostipes_unclassified0.0780.0007740.00185
speciesBifidobacterium_pseudocatenulatum0.0770.0007970.0019
speciesCoprococcus_eutactus-0.0770.000870.00206
genusBilophila0.0770.0008840.00209
genusLambdalikevirus0.0770.0009180.00216
speciesFusobacterium_mortiferum0.0760.0009660.00226
orderBifidobacteriales0.0760.001040.00241
familyBifidobacteriaceae0.0760.001040.00241
speciesBilophila_unclassified0.0760.001070.00246
speciesErysipelotrichaceae_bacterium_3_1_530.0750.001250.00283
phylumSynergistetes0.0750.001260.00283
classSynergistia0.0750.001260.00283
orderSynergistales0.0750.001260.00283
familySynergistaceae0.0750.001260.00283
genusBifidobacterium0.0740.001290.00289
speciesEubacterium_dolichum0.0740.001380.00307
speciesBifidobacterium_bifidum0.0740.001460.00324
genusPhascolarctobacterium-0.0720.001830.00402
speciesPhascolarctobacterium_succinatutens-0.0720.001830.00402
speciesParaprevotella_xylaniphila-0.070.002620.00573
speciesCollinsella_intestinalis0.0690.002670.00581
speciesRuminococcus_champanellensis-0.0690.002710.00587
speciesClostridium_spiroforme0.0690.002750.00593
speciesVeillonella_atypica0.0690.002790.00599
genusAnaerostipes0.0680.003180.00679
speciesStreptococcus_lutetiensis0.0670.003630.00772
speciesAlistipes_senegalensis-0.0670.003770.00798
phylumViruses_noname0.0660.004110.00862
classViruses_noname0.0660.004110.00862
speciesPorphyromonas_uenonis0.0660.004260.0089
speciesLactobacillus_gasseri0.0660.00450.00936
speciesProteus_mirabilis0.0660.004550.0094
speciesLactobacillus_vaginalis0.0660.004560.0094
speciesClostridium_sp_KLE_17550.0650.004750.0097
speciesBacteroides_sp_2_1_22-0.0650.004750.0097
genusPyramidobacter0.0650.004790.0097
speciesPyramidobacter_piscolens0.0650.004790.0097
speciesAlistipes_sp_AP110.0650.005170.0104
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0640.005420.0109
genusParaprevotella-0.0630.00620.0124
genusCoriobacteriaceae_noname0.0630.006440.0128
speciesParaprevotella_unclassified-0.0630.006520.0129
genusTunalikevirus0.0630.006550.0129
phylumFirmicutes0.0620.00710.014
speciesRuminococcus_sp_5_1_39BFAA0.0620.007210.0141
speciesMegamonas_funiformis0.0620.007650.0149
speciesBacteroides_coprocola0.0620.00770.015
speciesButyrivibrio_crossotus-0.0610.007910.0153
speciesLactobacillus_fermentum0.0610.008140.0157
speciesCoriobacteriaceae_bacterium_phI0.0610.00830.0159
genusRuminococcus0.0610.008470.0162
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0610.008580.0163
speciesEubacterium_siraeum-0.060.008890.0169
speciesLactobacillus_casei_paracasei0.060.009350.0176
speciesAlistipes_finegoldii-0.060.009370.0176
genusPorphyromonas0.0590.01050.0197
familyVeillonellaceae0.0580.01140.0213
speciesFusobacterium_varium0.0580.01160.0216
speciesParaprevotella_clara-0.0580.01270.0235
speciesMegamonas_hypermegale0.0570.01350.0249
speciesHoldemania_sp_AP20.0560.01550.0285
classDeltaproteobacteria0.0560.01580.0286
orderDesulfovibrionales0.0560.01580.0286
familyDesulfovibrionaceae0.0560.01580.0286
speciesKlebsiella_phage_KP360.0560.01580.0286
speciesMegamonas_rupellensis0.0550.01650.0297
familyViruses_noname0.0550.01680.03
genusViruses_noname0.0550.01680.03
speciesLachnospiraceae_bacterium_5_1_63FAA0.0550.01740.031
genusAnaerotruncus0.0550.01840.0326
speciesPorphyromonas_asaccharolytica0.0540.0190.0336
speciesCoprobacillus_sp_29_10.0530.02190.0386
speciesLactobacillus_crispatus0.0530.02230.0391
speciesLactobacillus_mucosae0.0530.02260.0395
speciesBacteroides_plebeius0.0520.02330.0406
speciesClostridium_leptum0.0520.02380.0413
speciesBacteroides_pectinophilus-0.0520.02430.042
speciesAcidaminococcus_fermentans0.0520.0250.0431
speciesEubacterium_cylindroides0.0520.02580.0443
speciesBacteroides_barnesiae-0.0510.02610.0446
speciesStreptococcus_phage_Sfi210.0510.02620.0446
speciesMitsuokella_multacida-0.0510.02650.045
speciesParabacteroides_unclassified-0.0510.02840.048
speciesParabacteroides_merdae-0.050.03190.0538
speciesC2likevirus_unclassified-0.050.0320.0538
orderViruses_noname0.050.03220.0539
familyRikenellaceae-0.0490.03290.0547
genusAlistipes-0.0490.03290.0547
genusC2likevirus-0.0490.03420.0566
speciesDorea_formicigenerans0.0490.03460.0571
speciesDorea_unclassified-0.0490.03540.0582
speciesEubacterium_hallii0.0480.03830.0628
classClostridia0.0470.04360.071
orderClostridiales0.0470.04360.071
genusCatenibacterium-0.0470.04410.0712
speciesCatenibacterium_mitsuokai-0.0470.04410.0712
speciesLactobacillus_delbrueckii0.0470.04420.0712
genusDorea0.0460.04590.0737
familyStaphylococcaceae0.0460.04690.075
speciesSubdoligranulum_unclassified-0.0460.04710.0751
speciesOscillibacter_unclassified0.0460.04730.0752
genusPeptoniphilus0.0460.0480.076
orderAeromonadales0.0450.05280.0831
speciesCollinsella_tanakaei0.0450.05280.0831
speciesBifidobacterium_catenulatum0.0440.0570.0894
speciesOscillibacter_sp_KLE_1728-0.0430.0620.0969
speciesBacteroides_sp_4_3_47FAA0.0420.07130.111
genusCollinsella0.0420.07180.111
genusParasutterella-0.0410.07580.117
speciesParasutterella_excrementihominis-0.0410.07580.117
speciesStreptococcus_thermophilus0.0410.07620.117
speciesBacteroides_cellulosilyticus-0.0410.07860.12
speciesPeptostreptococcaceae_noname_unclassified0.040.08390.128
speciesPropionibacterium_freudenreichii0.040.08430.128
speciesClostridium_sp_ATCC_BAA_4420.040.08610.131
genusSubdoligranulum-0.040.08740.132
orderCaudovirales0.040.08760.132
speciesLactobacillus_acidophilus-0.0390.08850.133
speciesBacteroides_eggerthii0.0390.09290.139
genusStaphylococcus0.0390.09380.14
speciesLactobacillus_oris0.0390.09530.142
orderPseudomonadales0.0380.1020.151
speciesAlistipes_indistinctus-0.0380.1030.152
speciesParabacteroides_sp_D13-0.0370.110.162
speciesAlistipes_sp_HGB5-0.0370.110.162
genusAcidaminococcus0.0370.1110.163
speciesBacteroides_caccae-0.0370.1130.165
speciesBacteroides_coprophilus0.0370.1140.166
speciesRoseburia_hominis-0.0360.1170.169
speciesRuminococcus_bromii0.0360.1170.169
speciesButyrivibrio_unclassified-0.0360.1180.17
genusCoprobacter-0.0360.120.172
speciesCoprobacter_fastidiosus-0.0360.120.172
familyOscillospiraceae0.0350.1260.179
genusTuricibacter0.0350.1260.179
genusOscillibacter0.0350.1260.179
speciesEggerthella_sp_1_3_56FAA0.0350.1330.189
genusBarnesiella-0.0340.1370.193
speciesBarnesiella_intestinihominis-0.0340.1370.193
speciesDesulfovibrio_piger-0.0340.1380.193
speciesAlistipes_putredinis-0.0340.1380.193
speciesBacteroides_xylanisolvens-0.0340.1420.198
speciesTuricibacter_unclassified0.0340.1430.199
speciesBifidobacterium_angulatum-0.0330.1490.207
speciesMegasphaera_elsdenii0.0330.1510.209
speciesLactobacillus_ruminis-0.0330.1580.218
genusClostridiaceae_noname0.0320.1610.22
speciesClostridiaceae_bacterium_JC1180.0320.1610.22
speciesAnaerostipes_hadrus0.0320.1610.22
speciesCollinsella_unclassified0.0320.1620.221
speciesBifidobacterium_adolescentis-0.0310.1740.237
genusSlackia0.030.1930.262
speciesPrevotella_copri0.030.1950.264
speciesOdoribacter_laneus0.030.20.27
speciesPeptostreptococcus_anaerobius0.0290.2040.274
speciesLactobacillus_reuteri0.0290.2160.29
speciesLactococcus_phage_936_sensu_lato-0.0280.2190.293
speciesTuricibacter_sanguinis0.0280.220.293
speciesCoprococcus_catus-0.0280.2220.295
genusButyricimonas-0.0280.2260.298
speciesButyricimonas_synergistica-0.0280.2260.298
speciesLactobacillus_amylovorus0.0280.2260.298
speciesRoseburia_intestinalis0.0280.2310.304
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0280.2320.304
genusPrevotella0.0270.2360.309
speciesRuminococcus_callidus0.0270.2460.321
speciesBacteroides_oleiciplenus0.0270.2480.322
speciesLactobacillus_sanfranciscensis0.0270.2490.323
speciesEubacterium_rectale-0.0260.2550.33
genusOlsenella0.0260.2580.333
speciesMethanobrevibacter_smithii-0.0260.2650.341
speciesLactobacillus_rhamnosus0.0260.2690.345
speciesBacteroides_intestinalis0.0250.2750.352
speciesBacteroides_sp_1_1_6-0.0250.2770.352
speciesAlistipes_unclassified-0.0250.2770.352
speciesBacteroides_finegoldii0.0250.2830.359
speciesMitsuokella_unclassified-0.0250.2880.364
speciesAcidaminococcus_intestini0.0240.3010.38
familyPodoviridae0.0230.3150.395
familyAcidaminococcaceae-0.0230.3150.395
genusMethanosphaera-0.0230.320.4
speciesMethanosphaera_stadtmanae-0.0230.320.4
speciesCoprococcus_sp_ART55_1-0.0230.3260.406
genusMitsuokella-0.0220.3310.411
speciesBacteroides_thetaiotaomicron-0.0220.3330.413
genusPropionibacterium0.0220.3350.414
genusFaecalibacterium-0.0220.3380.415
speciesFaecalibacterium_prausnitzii-0.0220.3380.415
classMethanobacteria-0.0220.3480.424
orderMethanobacteriales-0.0220.3480.424
familyMethanobacteriaceae-0.0220.3480.424
speciesPrevotella_bivia0.0220.3510.427
speciesCollinsella_aerofaciens0.0210.3580.434
speciesMegasphaera_unclassified0.0210.3620.438
speciesBifidobacterium_breve0.020.3760.454
speciesStreptococcus_pasteurianus0.020.3830.461
speciesParabacteroides_goldsteinii0.020.3870.465
genusCoprococcus-0.020.3880.465
genusMethanobrevibacter-0.020.3890.465
speciesBacteroides_faecis-0.020.3920.467
familyBacteroidales_noname-0.0190.4010.474
genusBacteroidales_noname-0.0190.4010.474
speciesBacteroidales_bacterium_ph8-0.0190.4010.474
speciesMethanobrevibacter_unclassified0.0190.4090.483
speciesEubacterium_ventriosum-0.0190.4220.497
phylumVerrucomicrobia-0.0180.4430.514
classVerrucomicrobiae-0.0180.4430.514
orderVerrucomicrobiales-0.0180.4430.514
familyVerrucomicrobiaceae-0.0180.4430.514
genusAkkermansia-0.0180.4430.514
speciesAkkermansia_muciniphila-0.0180.4430.514
speciesBacteroides_stercoris0.0180.4480.518
genusDialister0.0170.4550.525
speciesLactococcus_phage_bIL67-0.0170.4650.534
speciesBacteroides_clarus0.0170.4660.534
classNegativicutes0.0170.4670.534
orderSelenomonadales0.0170.4670.534
familyEubacteriaceae0.0170.4680.534
genusEubacterium0.0170.4730.538
speciesHoldemania_unclassified0.0160.4820.547
phylumEuryarchaeota-0.0160.4860.55
speciesBacteroides_fluxus-0.0160.4910.554
speciesDialister_invisus0.0160.5010.564
speciesOlsenella_unclassified0.0160.5020.564
speciesEubacterium_biforme-0.0140.5460.612
genusAcidaminococcaceae_unclassified0.0140.5480.613
speciesDialister_succinatiphilus0.0130.560.625
speciesClostridium_sp_L2_50-0.0130.5660.63
speciesRuminococcus_sp_JC304-0.0130.5820.646
familyRuminococcaceae0.0120.5950.659
speciesOdoribacter_unclassified0.0120.6150.68
speciesAnaerotruncus_unclassified-0.0110.6210.685
speciesAcidaminococcus_unclassified0.0110.6340.698
familyPrevotellaceae-0.010.6510.715
speciesSlackia_piriformis0.010.6580.721
speciesSutterella_parvirubra-0.010.660.721
familyBurkholderiales_noname-0.010.6660.726
familySiphoviridae-0.010.6810.74
speciesBacteroides_salanitronis-0.0090.6820.74
genusBurkholderiales_noname-0.0090.6970.753
speciesBurkholderiales_bacterium_1_1_47-0.0090.6970.753
speciesDesulfovibrio_desulfuricans0.0090.7060.761
speciesEubacterium_eligens0.0080.7240.778
speciesBacteroides_nordii-0.0080.7310.782
speciesBacteroides_salyersiae0.0080.7310.782
familyPropionibacteriaceae-0.0080.7430.793
speciesRoseburia_inulinivorans-0.0070.7460.795
familySuccinivibrionaceae-0.0070.7580.806
speciesDorea_longicatena-0.0070.770.817
speciesParabacteroides_johnsonii0.0070.7760.821
speciesParabacteroides_sp_20_30.0060.7820.826
genusSuccinatimonas-0.0060.7860.826
speciesSuccinatimonas_hippei-0.0060.7860.826
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0060.7950.834
speciesParabacteroides_distasonis0.0050.8210.859
speciesBacteroides_massiliensis0.0050.8410.878
genusSiphoviridae_noname-0.0040.8550.891
speciesOscillibacter_sp_KLE_17450.0040.8630.897
speciesLactococcus_phage_phi7-0.0040.8680.899
speciesLactococcus_phage_jm20.0040.8690.899
genusOxalobacter-0.0040.8780.905
speciesOxalobacter_formigenes-0.0040.8780.905
speciesEubacterium_ramulus-0.0030.8910.916
speciesLachnospiraceae_bacterium_2_1_46FAA0.0030.90.923
speciesBacteroides_sp_3_1_19-0.0030.9090.931
speciesBifidobacterium_animalis0.0020.9190.939
speciesCoprococcus_comes-0.0020.9240.942
speciesRoseburia_unclassified0.0020.9350.95
genusRoseburia-0.0020.9360.95
speciesRuminococcus_lactaris0.0020.9380.95
genusDesulfovibrio-0.0010.9530.963
speciesPrevotella_stercorea0.0010.9640.972
genusSutterellaceae_unclassified0.0010.9670.973
speciesAlistipes_onderdonkii-0.0010.9690.973
familyOxalobacteraceae-0.0010.9770.979
speciesLactococcus_phage_P6800.00.9910.991
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.02034809994690.002354763098127.7553500145e-0726158.78431
Type II diabetesDenmark752770.002597519713220.001919954831240.1155824851981024633.5857
Type II diabetesChina1831850.007238841116970.005900010831010.3575284365541785759.0138
Type II diabetesSweden53920.004646652486280.002801743348840.3911209641711272443.0884
ObesityDenmark1691230.002179853465540.00250425966350.3987694639021690955.6016
Crohns diseaseSpain17660.01557925293990.003539407091540.6155755319972511083.4913
Ulcerative colitisSpain78660.003286596020240.003539407091540.7207730086682412579.5837
Colorectal cancerAustria64350.007147678336020.01005434088470.7724962137322455683.083
Rheumatoid arthritisChina127980.01033598743140.008655706421270.9728103842212934197.8457
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382