MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-30 22:54:22 PST
Job id & description: 2150, elen_2453
Query type: dna
Count queries & homologs: 1, 2
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
645025435173484CompleteK00183COG0243ActinobacteriaEggerthella100.0100.099.74
645025435381500Lack both endsK00183COG0243Actinobacteriaunknown76.8199.5783.46
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusEggerthella0.6521.27e-2265.99e-224
speciesEggerthella_unclassified0.6337.72e-2101.82e-207
speciesEggerthella_lenta0.6292.42e-2063.81e-204
genusGordonibacter0.5115.25e-1254.96e-123
speciesGordonibacter_pamelaeae0.5115.25e-1254.96e-123
orderCoriobacteriales0.3413.09e-522.08e-50
familyCoriobacteriaceae0.3413.09e-522.08e-50
genusBlautia0.316.08e-433.59e-41
speciesLachnospiraceae_bacterium_1_4_56FAA0.33.38e-401.77e-38
speciesLachnospiraceae_bacterium_5_1_57FAA0.2821.56e-357.36e-34
genusCoprobacillus0.2751.09e-334.68e-32
phylumActinobacteria0.2692.5e-329.08e-31
classActinobacteria0.2692.5e-329.08e-31
speciesAnaerotruncus_colihominis0.2683.86e-321.3e-30
speciesRuminococcus_torques0.2589e-302.83e-28
familyPrevotellaceae-0.2553.63e-291.07e-27
genusAdlercreutzia0.255.77e-281.51e-26
speciesAdlercreutzia_equolifaciens0.255.77e-281.51e-26
genusHoldemania0.2498.02e-281.99e-26
speciesCoprobacillus_unclassified0.2481.46e-273.45e-26
speciesClostridium_bolteae0.2471.73e-273.89e-26
speciesClostridium_citroniae0.2471.95e-274.18e-26
speciesClostridium_hathewayi0.2422.8e-265.75e-25
genusLachnospiraceae_noname0.2391.09e-252.14e-24
speciesClostridium_symbiosum0.2391.32e-252.49e-24
speciesClostridium_ramosum0.2382.1e-253.81e-24
speciesErysipelotrichaceae_bacterium_2_2_44A0.2363.75e-256.52e-24
speciesErysipelotrichaceae_bacterium_6_1_450.2363.87e-256.52e-24
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2364.46e-257.26e-24
speciesClostridium_clostridioforme0.2299.46e-241.49e-22
speciesLachnospiraceae_bacterium_5_1_63FAA0.2213.6e-225.48e-21
genusAnaerostipes0.226.1e-229e-21
speciesSubdoligranulum_sp_4_3_54A2FAA0.226.49e-229.28e-21
genusPrevotella-0.227.61e-221.06e-20
genusRuminococcus0.2191.18e-211.59e-20
speciesRuminococcus_sp_5_1_39BFAA0.2181.83e-212.4e-20
familySutterellaceae-0.2172.32e-212.96e-20
speciesBlautia_producta0.2148.58e-211.07e-19
speciesPrevotella_copri-0.2149.24e-211.12e-19
speciesBlautia_hydrogenotrophica0.2088.93e-201.05e-18
speciesClostridium_asparagiforme0.2081.01e-191.16e-18
orderActinomycetales0.2062.61e-192.93e-18
genusSolobacterium0.2044.82e-195.17e-18
speciesSolobacterium_moorei0.2044.82e-195.17e-18
speciesRuminococcus_gnavus0.2011.84e-181.93e-17
classBetaproteobacteria-0.1986.09e-186.25e-17
speciesClostridiales_bacterium_1_7_47FAA0.1986.28e-186.31e-17
orderBurkholderiales-0.1942.54e-172.5e-16
genusActinomyces0.1942.71e-172.61e-16
familyActinomycetaceae0.1933.88e-173.66e-16
genusFlavonifractor0.1925.79e-175.26e-16
speciesFlavonifractor_plautii0.1925.79e-175.26e-16
speciesRuminococcus_obeum0.1917.18e-176.39e-16
speciesBifidobacterium_longum0.1812.98e-152.6e-14
speciesClostridium_leptum0.183.78e-153.24e-14
genusPropionibacterium0.1787.65e-156.45e-14
genusCatenibacterium-0.1787.92e-156.45e-14
speciesCatenibacterium_mitsuokai-0.1787.92e-156.45e-14
speciesParaprevotella_xylaniphila-0.1771.33e-141.06e-13
speciesDialister_invisus0.1761.64e-141.29e-13
speciesEubacterium_sp_3_1_310.1752.48e-141.92e-13
orderBifidobacteriales0.1752.82e-142.1e-13
familyBifidobacteriaceae0.1752.82e-142.1e-13
speciesEubacterium_hallii0.1752.85e-142.1e-13
familyClostridiaceae0.1743.32e-142.41e-13
speciesDorea_formicigenerans0.1743.95e-142.82e-13
genusClostridium0.1744.14e-142.92e-13
genusBifidobacterium0.1726.36e-144.41e-13
genusParaprevotella-0.1726.66e-144.56e-13
speciesParaprevotella_unclassified-0.1727.51e-145.06e-13
orderBacillales0.1727.82e-145.2e-13
speciesEubacterium_biforme-0.1682.26e-131.48e-12
phylumBacteroidetes-0.1673.22e-132.03e-12
classBacteroidia-0.1673.22e-132.03e-12
orderBacteroidales-0.1673.22e-132.03e-12
speciesAnaerostipes_hadrus0.1664.92e-133.06e-12
speciesStreptococcus_thermophilus0.1665.04e-133.09e-12
genusDorea0.1665.77e-133.49e-12
speciesPrevotella_stercorea-0.1641.03e-126.15e-12
familyBacillales_noname0.1621.7e-129.91e-12
genusGemella0.1621.7e-129.91e-12
speciesEggerthella_sp_1_3_56FAA0.1621.81e-121.04e-11
speciesStreptococcus_sanguinis0.1621.85e-121.05e-11
speciesHoldemania_filiformis0.1612.66e-121.49e-11
genusClostridiaceae_noname0.163.25e-121.78e-11
speciesClostridiaceae_bacterium_JC1180.163.25e-121.78e-11
speciesErysipelotrichaceae_bacterium_21_30.1585.54e-123.01e-11
speciesHaemophilus_parainfluenzae-0.1578e-124.29e-11
genusSutterella-0.1578.43e-124.47e-11
genusHaemophilus-0.1579e-124.72e-11
orderPasteurellales-0.1571e-115.13e-11
familyPasteurellaceae-0.1571e-115.13e-11
genusSutterellaceae_unclassified-0.1541.93e-119.8e-11
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1532.66e-111.34e-10
speciesParaprevotella_clara-0.1532.82e-111.4e-10
familyStreptococcaceae0.1532.9e-111.43e-10
familyClostridiales_Family_XI_Incertae_Sedis0.156.62e-113.21e-10
speciesPropionibacterium_freudenreichii0.156.67e-113.21e-10
genusStreptococcus0.1498.93e-114.26e-10
speciesSutterella_wadsworthensis-0.1491.03e-104.86e-10
speciesEubacterium_limosum0.1491.09e-105.09e-10
speciesEubacterium_eligens-0.1481.11e-105.14e-10
classBacilli0.1481.27e-105.82e-10
familyClostridiales_noname0.1481.29e-105.85e-10
orderLactobacillales0.1471.58e-107.1e-10
speciesEnterococcus_faecium0.1471.6e-107.12e-10
genusClostridiales_noname0.1471.81e-107.98e-10
speciesLactococcus_lactis0.1471.92e-108.39e-10
genusEnterococcus0.1462.16e-109.35e-10
familyEnterococcaceae0.1462.48e-101.06e-09
speciesButyrivibrio_crossotus-0.1453.37e-101.43e-09
familyPropionibacteriaceae0.1443.48e-101.47e-09
speciesErysipelotrichaceae_bacterium_3_1_530.1435.6e-102.34e-09
genusLeuconostoc0.1382.17e-098.98e-09
genusLactococcus0.1372.5e-091.03e-08
speciesDesulfovibrio_piger-0.1372.53e-091.03e-08
speciesLachnospiraceae_bacterium_1_1_57FAA0.1363.29e-091.33e-08
genusButyrivibrio-0.1363.61e-091.44e-08
genusPhascolarctobacterium-0.1354.78e-091.88e-08
speciesPhascolarctobacterium_succinatutens-0.1354.78e-091.88e-08
speciesStreptococcus_mitis_oralis_pneumoniae0.1346.66e-092.6e-08
genusOxalobacter-0.1337.84e-093.01e-08
speciesOxalobacter_formigenes-0.1337.84e-093.01e-08
speciesMitsuokella_multacida-0.1338.01e-093.05e-08
speciesLachnospiraceae_bacterium_6_1_63FAA0.1338.78e-093.32e-08
familyAcidaminococcaceae-0.1321.01e-083.78e-08
familyLeuconostocaceae0.1311.17e-084.35e-08
genusDialister0.1311.18e-084.35e-08
speciesLactobacillus_plantarum0.1311.27e-084.65e-08
speciesAlistipes_senegalensis-0.1311.33e-084.79e-08
speciesBacteroides_plebeius-0.1311.33e-084.79e-08
speciesHoldemania_sp_AP20.131.52e-085.44e-08
familyOxalobacteraceae-0.1283.09e-081.1e-07
speciesAnaerostipes_unclassified0.1264.43e-081.56e-07
speciesBacteroides_eggerthii-0.1264.72e-081.65e-07
speciesStreptococcus_salivarius0.1255.37e-081.86e-07
speciesLactobacillus_delbrueckii0.1247.27e-082.5e-07
genusOdoribacter-0.1247.78e-082.66e-07
speciesLactobacillus_ruminis-0.1238.75e-082.97e-07
speciesBacteroides_faecis-0.1192.74e-079.24e-07
speciesLactobacillus_rhamnosus0.1183.16e-071.06e-06
speciesOdoribacter_splanchnicus-0.1173.57e-071.19e-06
familyLachnospiraceae0.1173.98e-071.31e-06
speciesBacteroides_coprocola-0.1164.55e-071.49e-06
classClostridia0.1165.38e-071.74e-06
orderClostridiales0.1165.38e-071.74e-06
speciesStreptococcus_parasanguinis0.1155.86e-071.88e-06
genusRothia0.1156.54e-072.09e-06
familyMicrococcaceae0.1147.23e-072.29e-06
speciesLachnospiraceae_bacterium_2_1_58FAA0.1147.73e-072.43e-06
speciesStreptococcus_gordonii0.1148.01e-072.5e-06
speciesLactobacillus_casei_paracasei0.1131.01e-063.14e-06
genusParvimonas0.1131.04e-063.21e-06
speciesParvimonas_unclassified0.1131.05e-063.22e-06
speciesCoriobacteriaceae_bacterium_phI0.1111.36e-064.14e-06
genusCoriobacteriaceae_noname0.1111.45e-064.39e-06
speciesOlsenella_unclassified-0.1111.49e-064.48e-06
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1111.54e-064.6e-06
speciesClostridium_sp_KLE_17550.1111.65e-064.9e-06
speciesClostridium_spiroforme0.111.94e-065.72e-06
speciesRuminococcus_bromii0.1083.01e-068.82e-06
speciesEubacterium_dolichum0.1073.72e-061.08e-05
speciesClostridium_bartlettii0.1064.15e-061.2e-05
speciesAlistipes_shahii-0.1064.83e-061.39e-05
genusButyricimonas-0.1055.78e-061.64e-05
speciesButyricimonas_synergistica-0.1055.78e-061.64e-05
speciesParabacteroides_merdae-0.1046.51e-061.84e-05
familyOscillospiraceae0.1046.8e-061.9e-05
genusOscillibacter0.1046.8e-061.9e-05
speciesStreptococcus_anginosus0.1037.7e-062.14e-05
speciesLactobacillus_sanfranciscensis0.1037.85e-062.17e-05
genusFaecalibacterium-0.1011.3e-053.55e-05
speciesFaecalibacterium_prausnitzii-0.1011.3e-053.55e-05
phylumVerrucomicrobia0.11.56e-054.11e-05
classVerrucomicrobiae0.11.56e-054.11e-05
orderVerrucomicrobiales0.11.56e-054.11e-05
familyVerrucomicrobiaceae0.11.56e-054.11e-05
genusAkkermansia0.11.56e-054.11e-05
speciesAkkermansia_muciniphila0.11.56e-054.11e-05
genusOlsenella-0.0991.75e-054.59e-05
familyStaphylococcaceae0.0991.95e-055.09e-05
classNegativicutes-0.0982.08e-055.36e-05
orderSelenomonadales-0.0982.08e-055.36e-05
speciesOscillibacter_unclassified0.0982.09e-055.36e-05
genusDesulfovibrio-0.0982.12e-055.41e-05
phylumFirmicutes0.0982.14e-055.43e-05
familyLactobacillaceae0.0962.93e-057.4e-05
speciesHoldemania_unclassified0.0963.45e-058.66e-05
speciesCoprococcus_sp_ART55_1-0.0953.62e-059.04e-05
genusCoprobacter-0.0953.96e-059.79e-05
speciesCoprobacter_fastidiosus-0.0953.96e-059.79e-05
speciesRoseburia_inulinivorans-0.0954.26e-050.000105
classMethanobacteria-0.0945.06e-050.000122
orderMethanobacteriales-0.0945.06e-050.000122
familyMethanobacteriaceae-0.0945.06e-050.000122
genusLactobacillus0.0935.17e-050.000125
phylumEuryarchaeota-0.0936.01e-050.000144
genusButyricicoccus0.0927.38e-050.000175
speciesButyricicoccus_pullicaecorum0.0927.38e-050.000175
speciesMethanobrevibacter_smithii-0.0917.91e-050.000187
genusMitsuokella-0.0918.51e-050.0002
speciesPeptostreptococcus_anaerobius0.090.0001040.000243
speciesMitsuokella_unclassified-0.0890.0001060.000246
speciesRothia_mucilaginosa0.0890.0001170.000271
genusMegasphaera-0.0880.0001280.000295
genusMethanobrevibacter-0.0880.000140.000321
speciesBacteroides_finegoldii-0.0880.000150.000342
genusStaphylococcus0.0870.0001530.000346
speciesRuminococcus_champanellensis-0.0870.0001530.000346
genusPeptoniphilus0.0870.0001590.000356
speciesBacteroides_coprophilus-0.0870.0001590.000356
speciesStreptococcus_australis0.0870.000160.000356
speciesFusobacterium_mortiferum-0.0870.0001680.000372
speciesEubacterium_siraeum-0.0870.0001790.000395
familyRuminococcaceae0.0850.0002360.000518
speciesDorea_longicatena0.0840.0002680.000586
speciesClostridium_sp_ATCC_BAA_4420.0840.0002840.000618
speciesBifidobacterium_dentium0.0840.0002860.000619
speciesBifidobacterium_breve0.0840.0002910.000627
speciesBifidobacterium_pseudocatenulatum0.0820.0003860.000828
speciesStreptococcus_mutans0.0820.0003910.000831
speciesCoprobacillus_sp_D60.0820.0003910.000831
speciesMegamonas_funiformis-0.0810.000420.000889
speciesAlistipes_sp_AP110.0790.0006070.00128
speciesPrevotella_buccae-0.0790.000610.00128
speciesPrevotella_bivia0.0780.000690.00144
speciesCoprobacillus_sp_29_10.0780.0007790.00162
speciesAcidaminococcus_intestini-0.0770.0008290.0017
genusActinobacillus-0.0770.000830.0017
speciesActinobacillus_unclassified-0.0770.000830.0017
speciesBacteroides_clarus-0.0770.0008560.00175
speciesRuminococcus_sp_JC3040.0760.0009640.00196
speciesLachnospiraceae_bacterium_7_1_58FAA0.0760.0009850.002
speciesBacteroides_massiliensis-0.0760.001060.00214
genusRoseburia-0.0750.001240.00249
speciesVeillonella_unclassified-0.0750.001250.0025
speciesStreptococcus_vestibularis0.0740.001470.00293
speciesLactobacillus_gasseri0.0730.001490.00295
speciesAcidaminococcus_fermentans-0.0730.001650.00326
genusAggregatibacter-0.0720.001720.00338
speciesCampylobacter_concisus-0.0720.00180.00353
speciesVeillonella_atypica-0.0720.001870.00365
speciesMegasphaera_unclassified-0.0710.002080.00402
speciesParabacteroides_johnsonii-0.0710.002080.00402
speciesDialister_succinatiphilus-0.0710.002260.00435
speciesBacteroides_vulgatus-0.070.002380.00457
genusWeissella0.070.002390.00457
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0690.002740.00521
speciesWeissella_cibaria0.0690.002780.00527
speciesBacteroides_fragilis0.0680.003050.00576
speciesCoprococcus_eutactus-0.0680.003110.00585
speciesLactobacillus_acidophilus0.0680.003180.00596
speciesBacteroides_dorei-0.0680.003450.00644
genusPorphyromonas0.0670.003550.0066
speciesCoprococcus_comes0.0670.003750.00694
speciesMegamonas_unclassified-0.0660.004140.00763
speciesParabacteroides_goldsteinii-0.0660.004250.00781
genusMegamonas-0.0660.004410.00807
speciesPorphyromonas_uenonis0.0650.004770.00869
speciesClostridium_sp_L2_50-0.0650.004840.00879
genusVeillonella-0.0650.004970.00899
speciesBacteroides_pectinophilus-0.0650.005080.00915
genusBarnesiella-0.0640.005350.00957
speciesBarnesiella_intestinihominis-0.0640.005350.00957
speciesBacteroides_salanitronis-0.0640.005480.00976
genusPeptostreptococcus0.0640.005560.00987
speciesMegamonas_hypermegale-0.0640.00570.0101
speciesVeillonella_dispar-0.0630.006250.011
speciesCollinsella_unclassified0.0630.006510.0114
speciesBilophila_wadsworthia0.0630.006550.0115
classErysipelotrichia0.0620.007440.0129
orderErysipelotrichales0.0620.007440.0129
familyErysipelotrichaceae0.0620.007440.0129
speciesEubacterium_ramulus0.0620.007720.0133
speciesKlebsiella_oxytoca0.0610.008450.0145
speciesMethanobrevibacter_unclassified-0.0610.008730.0149
speciesSutterella_parvirubra-0.060.008980.0153
familyPorphyromonadaceae-0.060.00910.0155
speciesEnterococcus_faecalis0.060.009260.0157
speciesBacteroides_salyersiae-0.0590.01030.0174
speciesBacteroides_caccae-0.0590.01050.0176
speciesStreptococcus_phage_Sfi210.0590.01090.0182
speciesMegamonas_rupellensis-0.0590.01110.0185
phylumProteobacteria-0.0580.01180.0196
speciesAggregatibacter_segnis-0.0570.0130.0215
speciesBifidobacterium_animalis0.0570.01340.0221
speciesLactobacillus_oris0.0560.01590.0261
genusAnaerotruncus0.0550.01640.0269
speciesEscherichia_coli0.0550.01650.0269
speciesAnaerotruncus_unclassified-0.0550.01740.0283
genusEscherichia0.0540.01890.0307
speciesRoseburia_hominis-0.0540.01970.0318
speciesOdoribacter_unclassified-0.0540.020.0322
familyPeptostreptococcaceae0.0540.02020.0324
speciesEscherichia_unclassified0.0540.02040.0326
speciesCollinsella_intestinalis0.0540.02060.0328
speciesPorphyromonas_asaccharolytica0.0530.02170.0345
speciesParabacteroides_sp_D13-0.0530.02210.035
speciesHaemophilus_paraphrohaemolyticus-0.0530.02240.0354
speciesClostridium_nexile0.0520.02340.0368
speciesClostridium_perfringens-0.0520.02350.0369
speciesWeissella_confusa0.0520.02360.0369
genusParabacteroides-0.0520.02520.0393
speciesSlackia_piriformis-0.0510.0280.0435
phylumFusobacteria-0.050.02960.0455
classFusobacteriia-0.050.02960.0455
orderFusobacteriales-0.050.02960.0455
genusPeptostreptococcaceae_noname0.050.03080.0472
speciesFusobacterium_ulcerans-0.0490.03560.0544
speciesPeptostreptococcaceae_noname_unclassified-0.0480.03610.055
orderPseudomonadales0.0480.03640.0552
speciesGemella_morbillorum0.0480.03870.0585
familyFusobacteriaceae-0.0470.0410.0618
speciesMegasphaera_elsdenii-0.0460.04620.0694
speciesLeuconostoc_lactis0.0460.04750.0712
speciesBacteroides_xylanisolvens-0.0460.04820.072
speciesVeillonella_parvula-0.0460.04910.0731
speciesRoseburia_intestinalis-0.0450.04950.0735
speciesOscillibacter_sp_KLE_17450.0450.05150.0762
genusParasutterella-0.0450.05290.0777
speciesParasutterella_excrementihominis-0.0450.05290.0777
speciesBacteroides_barnesiae-0.0450.0530.0777
genusFusobacterium-0.0440.05440.0795
orderAeromonadales-0.0440.05630.0816
speciesAlistipes_onderdonkii0.0440.05650.0816
genusMethanosphaera-0.0440.05670.0816
speciesMethanosphaera_stadtmanae-0.0440.05670.0816
speciesBacteroides_intestinalis-0.0440.05670.0816
familyVeillonellaceae-0.0440.05720.0821
familyMyoviridae-0.0430.06040.0864
genusCollinsella0.0420.06730.096
orderEnterobacteriales0.0410.07410.105
familyEnterobacteriaceae0.0410.07410.105
speciesBacteroides_stercoris-0.040.08240.116
speciesOscillibacter_sp_KLE_17280.0390.0890.125
genusBilophila0.0390.08910.125
familySuccinivibrionaceae-0.0390.08960.125
speciesBilophila_unclassified0.0390.09370.131
classEpsilonproteobacteria-0.0390.0950.132
orderCampylobacterales-0.0390.0950.132
genusAcidaminococcus-0.0380.1030.143
familyEubacteriaceae0.0370.1060.146
speciesLactobacillus_fermentum0.0370.1090.15
speciesAlistipes_putredinis-0.0370.110.151
genusEubacterium0.0370.1110.151
speciesKlebsiella_phage_KP36-0.0370.1110.151
genusTunalikevirus-0.0370.1120.152
speciesBifidobacterium_catenulatum0.0360.1190.161
speciesRuminococcus_callidus-0.0360.120.162
genusSuccinatimonas-0.0360.1210.163
speciesSuccinatimonas_hippei-0.0360.1210.163
speciesBifidobacterium_angulatum-0.0350.1270.17
familyBacteroidaceae-0.0350.1330.176
genusPantoea0.0350.1330.176
genusBacteroides-0.0350.1330.176
speciesPantoea_unclassified0.0350.1330.176
speciesMegasphaera_micronuciformis-0.0340.1380.182
familyBacteroidales_noname-0.0340.140.184
genusBacteroidales_noname-0.0340.140.184
speciesBacteroidales_bacterium_ph8-0.0340.140.184
genusSlackia-0.0340.1470.192
genusPyramidobacter0.0330.1480.192
speciesPyramidobacter_piscolens0.0330.1480.192
speciesLactobacillus_reuteri0.0330.1540.2
speciesKlebsiella_pneumoniae-0.0330.1550.2
speciesKlebsiella_unclassified0.0330.1570.202
familyCampylobacteraceae-0.0320.1610.207
speciesLactococcus_phage_jm20.0320.1640.21
speciesBacteroides_cellulosilyticus-0.0320.1670.214
speciesLactococcus_phage_936_sensu_lato-0.0320.1690.216
speciesBifidobacterium_bifidum0.0320.1720.219
speciesPeptostreptococcus_stomatis0.0310.1780.226
phylumSynergistetes0.0310.1830.23
classSynergistia0.0310.1830.23
orderSynergistales0.0310.1830.23
familySynergistaceae0.0310.1830.23
speciesDesulfovibrio_desulfuricans-0.0310.1870.234
speciesFusobacterium_varium-0.030.1880.235
speciesEubacterium_cylindroides-0.030.1930.24
speciesHaemophilus_sputorum-0.030.1940.241
speciesEubacterium_ventriosum0.030.2020.25
speciesButyrivibrio_unclassified-0.0290.2140.264
genusCampylobacter-0.0290.2150.265
genusC2likevirus0.0290.2180.268
genusAcidaminococcaceae_unclassified-0.0280.2260.277
speciesEnterobacteria_phage_HK5440.0280.2330.285
speciesParabacteroides_distasonis-0.0270.2390.291
speciesLactobacillus_mucosae-0.0270.2450.298
speciesEnterobacter_aerogenes-0.0260.260.315
speciesAlistipes_indistinctus-0.0260.2620.317
speciesStreptococcus_pasteurianus0.0250.2710.327
speciesLachnospiraceae_bacterium_2_1_46FAA0.0250.2740.329
speciesAlistipes_unclassified0.0250.2740.329
speciesDorea_unclassified-0.0250.2790.334
speciesC2likevirus_unclassified0.0250.2820.337
speciesStreptococcus_infantarius0.0250.2850.34
genusSubdoligranulum0.0240.30.357
familyRikenellaceae0.0240.3060.362
genusAlistipes0.0240.3060.362
speciesAlistipes_finegoldii-0.0240.3070.362
speciesLactobacillus_vaginalis0.0240.3080.363
speciesBifidobacterium_adolescentis-0.0230.3190.375
speciesFusobacterium_nucleatum0.0230.3270.383
speciesAcidaminococcus_unclassified0.0230.3290.384
speciesStreptococcus_lutetiensis0.0220.3310.386
speciesLactococcus_phage_bIL670.0210.3570.415
orderViruses_noname0.0210.3590.416
genusLambdalikevirus0.0210.360.416
speciesKlebsiella_sp_MS_92_30.0210.3620.418
speciesCollinsella_tanakaei-0.0210.3630.418
speciesLachnospiraceae_bacterium_3_1_46FAA0.0210.3640.418
speciesBacteroides_ovatus0.0210.3650.418
genusKlebsiella-0.0190.4140.473
genusProteus-0.0190.4180.477
speciesParabacteroides_sp_20_30.0190.4190.477
speciesRoseburia_unclassified-0.0190.420.477
genusErysipelotrichaceae_noname0.0180.4270.483
genusMyoviridae_noname-0.0180.4320.488
speciesBacteroides_sp_4_3_47FAA-0.0170.4640.523
genusRuminococcaceae_noname0.0170.4710.528
speciesRuminococcaceae_bacterium_D160.0170.4710.528
speciesOdoribacter_laneus-0.0160.4870.545
speciesBacteroides_thetaiotaomicron-0.0160.490.547
speciesBacteroides_sp_2_1_220.0150.5060.563
speciesBacteroides_oleiciplenus-0.0150.5290.588
genusCoprococcus0.0140.5410.599
speciesBacteroides_fluxus-0.0140.5540.612
speciesAlistipes_sp_HGB5-0.0130.5690.627
genusCitrobacter0.0130.5790.637
speciesLactococcus_garvieae0.0130.5880.645
speciesSubdoligranulum_unclassified0.0120.5940.651
speciesCitrobacter_freundii0.0120.6090.665
speciesLactobacillus_amylovorus0.0110.6190.675
speciesParabacteroides_unclassified-0.0110.6210.675
genusMorganella0.0110.6250.677
speciesMorganella_morganii0.0110.6250.677
speciesTuricibacter_sanguinis0.0110.6310.682
speciesTuricibacter_unclassified0.0110.6420.692
familySiphoviridae0.0110.6450.693
speciesLactobacillus_salivarius0.010.6650.713
genusPseudoflavonifractor0.010.6680.713
speciesPseudoflavonifractor_capillosus0.010.6680.713
speciesBacteroides_nordii-0.0090.6870.732
familyPodoviridae-0.0090.690.734
speciesCoprococcus_catus0.0090.6920.734
speciesLactococcus_phage_phi7-0.0090.6940.734
orderCaudovirales-0.0090.7080.748
speciesBacteroides_sp_1_1_6-0.0090.7110.749
speciesLactobacillus_crispatus0.0080.7180.755
genusTuricibacter0.0080.7320.768
speciesCitrobacter_unclassified0.0070.7560.791
speciesBacteroides_uniformis-0.0060.7830.815
familyViruses_noname0.0060.7840.815
genusViruses_noname0.0060.7840.815
genusEnterobacter-0.0060.80.83
classGammaproteobacteria-0.0050.8270.856
classDeltaproteobacteria0.0040.8620.886
orderDesulfovibrionales0.0040.8620.886
familyDesulfovibrionaceae0.0040.8620.886
speciesEubacterium_rectale0.0040.8640.887
speciesRuminococcus_lactaris0.0040.870.891
speciesLactococcus_phage_P6800.0030.8980.917
genusSiphoviridae_noname0.0030.9020.92
speciesProteus_mirabilis-0.0030.9070.923
familyBurkholderiales_noname-0.0020.9330.947
phylumViruses_noname0.0020.9390.949
classViruses_noname0.0020.9390.949
speciesEnterobacter_cloacae-0.0020.9430.951
speciesCollinsella_aerofaciens0.0010.960.966
genusBurkholderiales_noname0.00.9870.989
speciesBurkholderiales_bacterium_1_1_470.00.9870.989
speciesBacteroides_sp_3_1_190.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.0006971508561590.0001221868956815.58466684533e-062510.829505
Rheumatoid arthritisChina127980.0007916915734780.0006015694692040.001793954212853161.05379
Colorectal cancerAustria64350.0008947566153360.004440731442370.107090170391529917.9287
Crohns diseaseSpain17660.0005089261237870.0003041572849870.241829394961781159.2219
Ulcerative colitisSpain78660.0002857110434310.0003041572849870.2975815045961376145.3949
Type II diabetesSweden53920.0008295233067060.000422354026340.3662689989071212941.0735
Type II diabetesDenmark752770.0001627843395670.0001042966602820.5540859587782164970.964
ObesityDenmark1691239.13117792324e-050.0001219666593790.9505184916222938796.6328
Liver cirrhosisChina1201149.42242231361e-059.86179920979e-050.9848281261222928298.3641
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382