MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-30 22:57:50 PST
Job id & description: 2151, Elen_2453_high
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 80%, 1e-10
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
645025435173484CompleteK00183COG0243ActinobacteriaEggerthella100.0100.099.74
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusEggerthella0.6862.43e-2601.15e-257
speciesEggerthella_unclassified0.671.37e-2433.23e-241
speciesEggerthella_lenta0.6491.92e-2243.02e-222
genusGordonibacter0.4013.54e-733.34e-71
speciesGordonibacter_pamelaeae0.4013.54e-733.34e-71
speciesLachnospiraceae_bacterium_1_4_56FAA0.3376.48e-515.1e-49
genusBlautia0.3214.07e-462.74e-44
genusCoprobacillus0.321.08e-456.37e-44
orderCoriobacteriales0.3152.04e-449.63e-43
familyCoriobacteriaceae0.3152.04e-449.63e-43
speciesLachnospiraceae_bacterium_5_1_57FAA0.3021.22e-405.23e-39
speciesCoprobacillus_unclassified0.2989.81e-403.86e-38
speciesClostridium_bolteae0.2892.84e-371.03e-35
speciesClostridium_ramosum0.2852.28e-367.69e-35
speciesClostridium_symbiosum0.2732.89e-339.09e-32
speciesClostridium_clostridioforme0.2661.48e-314.37e-30
speciesClostridium_hathewayi0.2651.8e-315e-30
speciesClostridium_citroniae0.2635.55e-311.46e-29
speciesRuminococcus_torques0.2594.82e-301.2e-28
speciesRuminococcus_gnavus0.2554.57e-291.08e-27
phylumActinobacteria0.2547.2e-291.54e-27
classActinobacteria0.2547.2e-291.54e-27
speciesErysipelotrichaceae_bacterium_2_2_44A0.2498.95e-281.84e-26
speciesBlautia_producta0.2499.43e-281.85e-26
speciesAnaerotruncus_colihominis0.2481.61e-273.04e-26
familyPrevotellaceae-0.2431.63e-262.96e-25
genusLachnospiraceae_noname0.2423.16e-265.52e-25
speciesClostridiales_bacterium_1_7_47FAA0.2357.45e-251.26e-23
speciesErysipelotrichaceae_bacterium_6_1_450.2322.45e-243.99e-23
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2223e-224.72e-21
familySutterellaceae-0.2181.34e-212.04e-20
genusAnaerostipes0.2181.47e-212.17e-20
speciesBlautia_hydrogenotrophica0.2172.16e-213.09e-20
speciesClostridium_asparagiforme0.2156.57e-219.12e-20
genusHoldemania0.2148.59e-211.16e-19
speciesLachnospiraceae_bacterium_5_1_63FAA0.2149.17e-211.2e-19
genusFlavonifractor0.2112.49e-203.09e-19
speciesFlavonifractor_plautii0.2112.49e-203.09e-19
familyActinomycetaceae0.213.92e-204.74e-19
genusActinomyces0.214.45e-205.25e-19
speciesSubdoligranulum_sp_4_3_54A2FAA0.2097.22e-208.31e-19
genusSolobacterium0.2098.05e-208.84e-19
speciesSolobacterium_moorei0.2098.05e-208.84e-19
speciesRuminococcus_sp_5_1_39BFAA0.2052.95e-193.16e-18
speciesPrevotella_copri-0.2038.31e-198.65e-18
genusPrevotella-0.2038.43e-198.65e-18
genusClostridium0.2029.75e-199.79e-18
orderActinomycetales0.2021.04e-181.02e-17
classBetaproteobacteria-0.2021.15e-181.11e-17
familyClostridiaceae0.2011.42e-181.34e-17
orderBurkholderiales-0.23.01e-182.79e-17
speciesEubacterium_sp_3_1_310.1951.94e-171.76e-16
genusRuminococcus0.199.86e-178.78e-16
genusAdlercreutzia0.1882.35e-162.02e-15
speciesAdlercreutzia_equolifaciens0.1882.35e-162.02e-15
speciesStreptococcus_sanguinis0.1812.87e-152.42e-14
speciesParaprevotella_xylaniphila-0.183.81e-153.15e-14
genusPropionibacterium0.183.9e-153.17e-14
orderBacillales0.184.04e-153.23e-14
genusOdoribacter-0.1797.11e-155.59e-14
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1752.18e-141.69e-13
genusClostridiales_noname0.1752.34e-141.78e-13
familyBacillales_noname0.1743.14e-142.32e-13
genusGemella0.1743.14e-142.32e-13
speciesOdoribacter_splanchnicus-0.1735.42e-143.94e-13
speciesDialister_invisus0.1726.12e-144.38e-13
genusParaprevotella-0.1726.98e-144.92e-13
speciesParaprevotella_unclassified-0.1719.52e-146.61e-13
speciesErysipelotrichaceae_bacterium_21_30.1719.9e-146.77e-13
speciesEubacterium_eligens-0.171.39e-139.37e-13
speciesErysipelotrichaceae_bacterium_3_1_530.1692.13e-131.42e-12
speciesEubacterium_biforme-0.1682.98e-131.95e-12
speciesAlistipes_senegalensis-0.1665.83e-133.77e-12
speciesBifidobacterium_longum0.1656.19e-133.95e-12
orderBifidobacteriales0.1648.79e-135.46e-12
familyBifidobacteriaceae0.1648.79e-135.46e-12
speciesEggerthella_sp_1_3_56FAA0.1631.32e-128.09e-12
familyClostridiales_noname0.1631.4e-128.47e-12
genusCatenibacterium-0.1621.56e-129.2e-12
speciesCatenibacterium_mitsuokai-0.1621.56e-129.2e-12
genusBifidobacterium0.1621.75e-121.02e-11
genusOxalobacter-0.1622.02e-121.15e-11
speciesOxalobacter_formigenes-0.1622.02e-121.15e-11
genusClostridiaceae_noname0.1612.8e-121.55e-11
speciesClostridiaceae_bacterium_JC1180.1612.8e-121.55e-11
speciesLachnospiraceae_bacterium_6_1_63FAA0.163.87e-122.12e-11
speciesEubacterium_limosum0.1594.52e-122.45e-11
speciesDorea_formicigenerans0.1587.34e-123.94e-11
genusButyrivibrio-0.1577.95e-124.22e-11
genusSutterella-0.1578.19e-124.3e-11
speciesButyrivibrio_crossotus-0.1579.11e-124.73e-11
familyStreptococcaceae0.1561.17e-116e-11
speciesEubacterium_hallii0.1561.27e-116.45e-11
speciesParaprevotella_clara-0.1561.31e-116.58e-11
familyOxalobacteraceae-0.1551.37e-116.81e-11
phylumBacteroidetes-0.1541.89e-119.15e-11
classBacteroidia-0.1541.9e-119.15e-11
orderBacteroidales-0.1541.9e-119.15e-11
speciesRuminococcus_obeum0.1542.38e-111.13e-10
genusStreptococcus0.1532.86e-111.35e-10
classBacilli0.1524.47e-112.09e-10
familyClostridiales_Family_XI_Incertae_Sedis0.1514.56e-112.11e-10
speciesSutterella_wadsworthensis-0.1514.98e-112.28e-10
speciesAnaerostipes_unclassified0.1515.07e-112.3e-10
orderLactobacillales0.156.8e-113.06e-10
speciesAnaerostipes_hadrus0.157.65e-113.41e-10
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1499.16e-114.04e-10
speciesPropionibacterium_freudenreichii0.1471.5e-106.56e-10
speciesStreptococcus_thermophilus0.1471.54e-106.67e-10
speciesStreptococcus_mitis_oralis_pneumoniae0.1471.82e-107.81e-10
speciesPrevotella_stercorea-0.1471.93e-108.21e-10
genusDorea0.1452.86e-101.21e-09
genusHaemophilus-0.1443.87e-101.62e-09
orderPasteurellales-0.1434.73e-101.94e-09
familyPasteurellaceae-0.1434.73e-101.94e-09
speciesAlistipes_shahii-0.1434.87e-101.98e-09
speciesHoldemania_sp_AP20.1435e-102.02e-09
speciesClostridium_leptum0.1435.7e-102.28e-09
speciesHaemophilus_parainfluenzae-0.1436e-102.38e-09
familyPropionibacteriaceae0.1427.15e-102.81e-09
genusLeuconostoc0.1411.01e-093.94e-09
familyLeuconostocaceae0.141.05e-094.06e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.141.37e-095.26e-09
speciesDesulfovibrio_piger-0.1372.78e-091.06e-08
genusSutterellaceae_unclassified-0.1354.48e-091.69e-08
genusEnterococcus0.1345.26e-091.97e-08
speciesLactococcus_lactis0.1346.54e-092.43e-08
familyEnterococcaceae0.1337.04e-092.6e-08
speciesEubacterium_siraeum-0.1311.15e-084.21e-08
speciesEnterococcus_faecium0.1311.27e-084.61e-08
speciesLactobacillus_plantarum0.131.5e-085.4e-08
speciesCoprococcus_sp_ART55_1-0.1282.68e-089.58e-08
speciesMitsuokella_multacida-0.1273.36e-081.19e-07
speciesLactobacillus_delbrueckii0.1273.71e-081.31e-07
speciesEubacterium_dolichum0.1273.8e-081.33e-07
familyAcidaminococcaceae-0.1255.23e-081.82e-07
speciesStreptococcus_salivarius0.1247.27e-082.5e-07
speciesStreptococcus_gordonii0.1247.62e-082.61e-07
phylumEuryarchaeota-0.1248.07e-082.74e-07
genusCoprobacter-0.1238.55e-082.86e-07
speciesCoprobacter_fastidiosus-0.1238.55e-082.86e-07
classMethanobacteria-0.1231.02e-073.34e-07
orderMethanobacteriales-0.1231.02e-073.34e-07
familyMethanobacteriaceae-0.1231.02e-073.34e-07
speciesBacteroides_coprocola-0.1221.11e-073.61e-07
speciesLactobacillus_ruminis-0.1221.13e-073.65e-07
speciesParabacteroides_merdae-0.1221.18e-073.79e-07
genusLactococcus0.1211.41e-074.5e-07
speciesBacteroides_eggerthii-0.1211.43e-074.53e-07
speciesStreptococcus_parasanguinis0.1211.51e-074.75e-07
genusPhascolarctobacterium-0.1211.7e-075.28e-07
speciesPhascolarctobacterium_succinatutens-0.1211.7e-075.28e-07
speciesHoldemania_filiformis0.121.98e-076.11e-07
speciesMethanobrevibacter_smithii-0.122.04e-076.25e-07
speciesBacteroides_plebeius-0.1192.42e-077.37e-07
speciesLachnospiraceae_bacterium_1_1_57FAA0.1192.44e-077.38e-07
speciesClostridium_sp_KLE_17550.1183.02e-079.08e-07
speciesStreptococcus_anginosus0.1183.04e-079.08e-07
speciesLactobacillus_rhamnosus0.1173.58e-071.06e-06
genusMethanobrevibacter-0.1174.08e-071.2e-06
genusFaecalibacterium-0.1174.29e-071.25e-06
speciesFaecalibacterium_prausnitzii-0.1174.29e-071.25e-06
speciesRoseburia_inulinivorans-0.1164.89e-071.42e-06
speciesBacteroides_faecis-0.1146.99e-072.01e-06
genusDialister0.1147.36e-072.11e-06
genusParvimonas0.1121.25e-063.55e-06
speciesParvimonas_unclassified0.1121.27e-063.59e-06
speciesClostridium_spiroforme0.1121.3e-063.65e-06
speciesLactobacillus_casei_paracasei0.111.86e-065.19e-06
speciesOlsenella_unclassified-0.1092.37e-066.58e-06
genusCoriobacteriaceae_noname0.1082.65e-067.31e-06
genusBarnesiella-0.1083.11e-068.49e-06
speciesBarnesiella_intestinihominis-0.1083.11e-068.49e-06
speciesCoriobacteriaceae_bacterium_phI0.1073.2e-068.68e-06
genusMitsuokella-0.1073.4e-069.17e-06
familyLachnospiraceae0.1073.43e-069.2e-06
genusButyricicoccus0.1064.25e-061.13e-05
speciesButyricicoccus_pullicaecorum0.1064.25e-061.13e-05
speciesMitsuokella_unclassified-0.1064.79e-061.26e-05
genusPeptoniphilus0.1055.86e-061.54e-05
genusRothia0.1046.35e-061.66e-05
familyMicrococcaceae0.1046.9e-061.79e-05
genusButyricimonas-0.1047.07e-061.81e-05
speciesButyricimonas_synergistica-0.1047.07e-061.81e-05
speciesLactobacillus_sanfranciscensis0.1037.58e-061.93e-05
speciesClostridium_bartlettii0.1038.37e-062.12e-05
familyLactobacillaceae0.1038.8e-062.22e-05
speciesRoseburia_hominis-0.11.59e-053.99e-05
speciesPeptostreptococcus_anaerobius0.0991.82e-054.55e-05
familyBacteroidales_noname-0.0991.86e-054.57e-05
genusBacteroidales_noname-0.0991.86e-054.57e-05
speciesBacteroidales_bacterium_ph8-0.0991.86e-054.57e-05
genusDesulfovibrio-0.0991.97e-054.79e-05
genusLactobacillus0.0991.97e-054.79e-05
speciesStreptococcus_australis0.0982.08e-055.03e-05
speciesStreptococcus_mutans0.0982.11e-055.08e-05
speciesBifidobacterium_dentium0.0972.76e-056.61e-05
speciesClostridium_sp_ATCC_BAA_4420.0963.11e-057.4e-05
speciesAlistipes_putredinis-0.0963.12e-057.4e-05
speciesBifidobacterium_breve0.0963.25e-057.67e-05
genusOlsenella-0.0953.62e-058.5e-05
speciesClostridium_nexile0.0944.47e-050.000104
speciesDialister_succinatiphilus-0.0945.05e-050.000117
familyOscillospiraceae0.0926.42e-050.000148
genusOscillibacter0.0926.42e-050.000148
speciesBacteroides_dorei-0.0918.01e-050.000184
speciesPrevotella_bivia0.0918.37e-050.000191
speciesLactobacillus_gasseri0.099.78e-050.000222
classClostridia0.090.0001010.000227
orderClostridiales0.090.0001010.000227
familyStaphylococcaceae0.0890.0001260.000282
speciesAnaerotruncus_unclassified-0.0880.0001360.000303
speciesRuminococcus_champanellensis-0.0880.0001430.000317
speciesRothia_mucilaginosa0.0860.0001890.000417
genusRoseburia-0.0860.0001970.000432
speciesBacteroides_finegoldii-0.0860.0001980.000433
speciesBacteroides_coprophilus-0.0850.0002390.00052
speciesBacteroides_massiliensis-0.0840.0002640.000572
speciesCoprococcus_eutactus-0.0840.0002870.000619
familyPorphyromonadaceae-0.0830.0003140.000674
speciesOscillibacter_unclassified0.0830.0003490.000745
genusPeptostreptococcus0.0830.0003550.000755
speciesAlistipes_finegoldii-0.0820.0003620.000766
phylumFirmicutes0.0820.0004030.000849
speciesClostridium_sp_L2_50-0.0810.000420.000881
speciesCoprobacillus_sp_D60.0810.0004570.000954
speciesRuminococcus_bromii0.0810.0004730.000984
classNegativicutes-0.080.0005530.00114
orderSelenomonadales-0.080.0005530.00114
speciesBacteroides_pectinophilus-0.0790.0006570.00135
speciesParabacteroides_sp_D13-0.0790.0006780.00139
speciesBifidobacterium_pseudocatenulatum0.0780.0007340.00149
speciesHoldemania_unclassified0.0770.0007960.00161
genusStaphylococcus0.0770.0009210.00186
speciesCoprobacillus_sp_29_10.0760.0009890.00199
speciesBacteroides_caccae-0.0760.001010.00202
speciesMegasphaera_unclassified-0.0760.001030.00205
speciesBacteroides_fragilis0.0750.00110.00218
genusWeissella0.0750.001160.00229
classErysipelotrichia0.0740.001430.00279
orderErysipelotrichales0.0740.001430.00279
familyErysipelotrichaceae0.0740.001430.00279
speciesWeissella_cibaria0.0740.001460.00284
genusMegasphaera-0.0730.001550.003
speciesBacteroides_clarus-0.0720.001920.0037
speciesRuminococcus_callidus-0.0720.001940.00372
speciesStreptococcus_vestibularis0.0710.002220.00424
speciesMethanobrevibacter_unclassified-0.0710.002250.00428
speciesRuminococcus_sp_JC3040.0690.002780.00527
speciesEscherichia_coli0.0690.002980.00563
speciesLactobacillus_oris0.0690.003030.0057
speciesStreptococcus_phage_Sfi210.0680.00320.00599
speciesAlistipes_sp_AP110.0680.003410.00636
genusParasutterella-0.0660.004270.0079
speciesParasutterella_excrementihominis-0.0660.004270.0079
genusEscherichia0.0660.004390.00809
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0650.004640.00852
speciesParabacteroides_goldsteinii-0.0650.004940.00904
speciesBacteroides_cellulosilyticus-0.0640.00570.0104
speciesMegamonas_funiformis-0.0630.006120.0111
speciesCollinsella_unclassified0.0630.006180.0112
speciesAcidaminococcus_fermentans-0.0620.007740.0139
speciesAlistipes_indistinctus-0.0620.007740.0139
speciesOscillibacter_sp_KLE_17450.060.009190.0164
genusMethanosphaera-0.060.009250.0164
speciesMethanosphaera_stadtmanae-0.060.009250.0164
familyPeptostreptococcaceae0.060.009680.0171
speciesAcidaminococcus_intestini-0.060.009750.0172
speciesMegasphaera_elsdenii-0.060.009850.0173
speciesDorea_longicatena0.0580.01250.0215
phylumVerrucomicrobia0.0580.01260.0215
classVerrucomicrobiae0.0580.01260.0215
orderVerrucomicrobiales0.0580.01260.0215
familyVerrucomicrobiaceae0.0580.01260.0215
genusAkkermansia0.0580.01260.0215
genusParabacteroides-0.0580.01260.0215
speciesAkkermansia_muciniphila0.0580.01260.0215
speciesBacteroides_salyersiae-0.0580.01280.0217
speciesBifidobacterium_animalis0.0570.01340.0227
speciesEnterococcus_faecalis0.0570.01450.0244
speciesBacteroides_vulgatus-0.0570.01450.0244
speciesBacteroides_intestinalis-0.0560.01620.0271
speciesGemella_morbillorum0.0550.01660.0277
speciesLachnospiraceae_bacterium_7_1_58FAA0.0550.01740.0289
speciesLactobacillus_acidophilus0.0550.0180.0298
genusPorphyromonas0.0550.01810.0299
speciesCollinsella_intestinalis0.0550.01840.0303
speciesAlistipes_unclassified0.0540.01870.0306
genusActinobacillus-0.0540.020.0326
speciesActinobacillus_unclassified-0.0540.020.0326
genusPeptostreptococcaceae_noname0.0530.02070.0336
speciesBifidobacterium_angulatum-0.0530.02080.0336
speciesWeissella_confusa0.0530.02180.0351
speciesLachnospiraceae_bacterium_2_1_46FAA0.0530.02250.0361
speciesFusobacterium_mortiferum-0.0530.0230.0368
speciesSlackia_piriformis-0.0520.02390.0381
speciesVeillonella_unclassified-0.0520.02430.0386
speciesBacteroides_xylanisolvens-0.0520.02450.0388
speciesClostridium_perfringens-0.0520.02510.0395
speciesRoseburia_intestinalis-0.0520.02510.0395
speciesBacteroides_salanitronis-0.0510.02880.0452
speciesPeptostreptococcus_stomatis0.050.03190.0499
speciesLactobacillus_fermentum0.0490.03420.0533
genusPantoea0.0480.0360.0557
speciesPantoea_unclassified0.0480.0360.0557
phylumProteobacteria-0.0480.03610.0557
speciesSutterella_parvirubra-0.0480.03870.0594
orderEnterobacteriales0.0480.03890.0594
familyEnterobacteriaceae0.0480.03890.0594
orderPseudomonadales0.0470.04170.0635
speciesButyrivibrio_unclassified-0.0470.04290.0651
speciesKlebsiella_oxytoca0.0470.0430.0651
speciesMegamonas_hypermegale-0.0460.04710.071
speciesEscherichia_unclassified0.0450.05210.0783
speciesPrevotella_buccae-0.0440.05680.0851
familyRuminococcaceae0.0440.05810.0868
speciesLeuconostoc_lactis0.0440.05870.0874
speciesMegamonas_unclassified-0.0440.05970.0885
familyMyoviridae-0.0440.05990.0885
speciesPeptostreptococcaceae_noname_unclassified-0.0440.060.0885
speciesCampylobacter_concisus-0.0430.06020.0885
speciesBifidobacterium_adolescentis-0.0430.06190.0907
genusMegamonas-0.0430.06210.0907
speciesKlebsiella_phage_KP36-0.0420.06740.0982
speciesMegamonas_rupellensis-0.0420.06780.0985
speciesOscillibacter_sp_KLE_17280.0410.07670.111
speciesPorphyromonas_uenonis0.0410.0790.114
speciesSubdoligranulum_unclassified-0.040.08110.117
genusTunalikevirus-0.040.08140.117
speciesVeillonella_atypica-0.0390.08870.127
speciesBifidobacterium_bifidum0.0390.08940.127
genusVeillonella-0.0390.08950.127
speciesParabacteroides_johnsonii-0.0390.08950.127
genusErysipelotrichaceae_noname0.0390.09370.132
familyRikenellaceae-0.0390.09390.132
genusAlistipes-0.0390.09390.132
speciesStreptococcus_infantarius0.0390.09420.132
speciesLactobacillus_vaginalis0.0390.09590.134
genusAggregatibacter-0.0380.09610.134
speciesEnterobacteria_phage_HK5440.0380.1050.146
speciesFusobacterium_nucleatum0.0370.1090.151
speciesBilophila_wadsworthia0.0370.1130.156
speciesBacteroides_ovatus0.0370.1140.157
genusCoprococcus-0.0360.1210.166
speciesStreptococcus_pasteurianus0.0360.1240.17
speciesEubacterium_cylindroides-0.0350.1310.179
familyVeillonellaceae-0.0340.1380.188
speciesDesulfovibrio_desulfuricans-0.0340.1420.193
genusAcidaminococcaceae_unclassified-0.0340.1430.193
speciesLactococcus_phage_936_sensu_lato-0.0330.1560.21
speciesBacteroides_stercoris-0.0330.1560.21
speciesPorphyromonas_asaccharolytica0.0330.1570.211
speciesOdoribacter_unclassified-0.0330.1590.213
speciesRuminococcus_lactaris-0.0320.160.213
speciesLactobacillus_reuteri0.0320.1620.215
speciesHaemophilus_paraphrohaemolyticus-0.0320.1650.219
speciesKlebsiella_unclassified0.0310.1760.233
speciesBacteroides_barnesiae-0.030.1870.247
genusEnterobacter-0.030.1920.252
genusSlackia-0.030.1930.253
speciesLactobacillus_salivarius0.030.1960.256
speciesLactococcus_phage_bIL670.030.2010.262
genusMorganella0.0290.2050.266
speciesMorganella_morganii0.0290.2050.266
genusAcidaminococcus-0.0290.2080.269
speciesLactococcus_phage_jm20.0290.2140.276
genusSubdoligranulum-0.0280.2230.287
speciesAggregatibacter_segnis-0.0280.2270.291
speciesEubacterium_ramulus0.0280.2310.295
speciesEnterobacter_aerogenes-0.0280.2340.299
speciesVeillonella_dispar-0.0270.2360.3
speciesLactobacillus_crispatus0.0270.240.305
speciesKlebsiella_pneumoniae-0.0270.2430.307
speciesEubacterium_rectale-0.0270.2460.31
speciesBilophila_unclassified0.0270.2470.311
classEpsilonproteobacteria-0.0270.2510.314
orderCampylobacterales-0.0270.2510.314
speciesStreptococcus_lutetiensis0.0270.2520.315
speciesLactobacillus_mucosae-0.0260.2620.326
speciesCoprococcus_catus-0.0260.2670.332
speciesEnterobacter_cloacae-0.0250.2710.336
genusBilophila0.0250.2720.336
speciesParabacteroides_distasonis-0.0250.290.357
familyBurkholderiales_noname-0.0240.2930.36
familyBacteroidaceae-0.0240.3080.377
genusBacteroides-0.0240.3080.377
genusBurkholderiales_noname-0.0230.3190.388
speciesBurkholderiales_bacterium_1_1_47-0.0230.3190.388
genusAnaerotruncus0.0230.3250.394
speciesBifidobacterium_catenulatum0.0220.3450.418
speciesBacteroides_sp_4_3_47FAA-0.0210.3530.426
speciesBacteroides_uniformis-0.0210.3610.435
genusPyramidobacter0.0210.3670.44
speciesPyramidobacter_piscolens0.0210.3670.44
familyCampylobacteraceae-0.0210.3730.446
genusCollinsella0.0210.3740.446
genusPseudoflavonifractor-0.020.380.45
speciesPseudoflavonifractor_capillosus-0.020.380.45
speciesAcidaminococcus_unclassified0.020.380.45
speciesDorea_unclassified-0.020.3810.45
orderAeromonadales-0.020.3920.461
genusLambdalikevirus0.020.3980.467
speciesAlistipes_sp_HGB5-0.0190.40.468
speciesLactobacillus_amylovorus0.0190.4030.471
genusKlebsiella-0.0190.4070.474
genusC2likevirus0.0190.4140.481
familySuccinivibrionaceae-0.0190.4230.491
speciesCollinsella_aerofaciens-0.0180.4260.493
speciesCoprococcus_comes0.0180.4390.503
phylumSynergistetes0.0180.440.503
classSynergistia0.0180.440.503
orderSynergistales0.0180.440.503
familySynergistaceae0.0180.440.503
familyPodoviridae0.0180.4430.505
speciesVeillonella_parvula-0.0180.4450.506
genusCampylobacter-0.0170.4570.517
speciesParabacteroides_sp_20_30.0170.4570.517
genusSiphoviridae_noname0.0170.460.519
speciesKlebsiella_sp_MS_92_30.0170.4650.524
genusSuccinatimonas-0.0150.5080.569
speciesSuccinatimonas_hippei-0.0150.5080.569
speciesBacteroides_nordii-0.0150.5090.569
speciesC2likevirus_unclassified0.0150.5110.57
speciesProteus_mirabilis0.0150.5190.578
speciesBacteroides_sp_2_1_220.0140.5450.605
speciesOdoribacter_laneus-0.0140.550.609
genusMyoviridae_noname-0.0140.5510.609
speciesFusobacterium_ulcerans-0.0130.5770.636
speciesCollinsella_tanakaei-0.0130.5820.64
orderViruses_noname0.0110.6250.686
speciesRoseburia_unclassified-0.0110.6370.697
speciesAlistipes_onderdonkii-0.0110.6380.697
speciesBacteroides_sp_1_1_60.010.6530.712
genusCitrobacter0.010.6710.73
speciesMegasphaera_micronuciformis0.010.6730.73
speciesLactococcus_phage_phi7-0.0090.6870.744
speciesLachnospiraceae_bacterium_3_1_46FAA0.0090.6990.755
familyEubacteriaceae0.0080.7230.779
genusEubacterium0.0080.7390.795
familySiphoviridae0.0080.7450.799
speciesLactococcus_garvieae0.0070.7470.8
speciesCitrobacter_freundii0.0070.7580.809
genusTuricibacter-0.0070.7730.824
speciesBacteroides_thetaiotaomicron-0.0060.7910.836
speciesHaemophilus_sputorum-0.0060.7920.836
speciesFusobacterium_varium-0.0060.7920.836
familyViruses_noname0.0060.7980.836
genusViruses_noname0.0060.7980.836
classDeltaproteobacteria-0.0060.7990.836
orderDesulfovibrionales-0.0060.7990.836
familyDesulfovibrionaceae-0.0060.7990.836
classGammaproteobacteria0.0060.8070.843
speciesBacteroides_sp_3_1_19-0.0050.8230.858
speciesBacteroides_fluxus-0.0050.8350.868
phylumFusobacteria-0.0050.8420.87
classFusobacteriia-0.0050.8420.87
orderFusobacteriales-0.0050.8420.87
orderCaudovirales-0.0040.8610.887
speciesParabacteroides_unclassified0.0040.8670.892
phylumViruses_noname0.0030.90.921
classViruses_noname0.0030.90.921
speciesTuricibacter_sanguinis-0.0030.9010.921
speciesCitrobacter_unclassified0.0030.9040.922
speciesBacteroides_oleiciplenus0.0030.9120.928
genusRuminococcaceae_noname0.0020.9220.934
speciesRuminococcaceae_bacterium_D160.0020.9220.934
familyFusobacteriaceae-0.0010.9550.965
speciesLactococcus_phage_P6800.0010.9740.982
genusFusobacterium0.0010.9780.984
speciesEubacterium_ventriosum0.00.9930.997
genusProteus0.00.9980.999
speciesTuricibacter_unclassified0.00.9990.999
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.0006491566884899.76177011193e-056.92639786819e-07870.287518
Rheumatoid arthritisChina127980.0005281079897240.0005152996057340.022282693699718276.09264
Crohns diseaseSpain17660.0004697091300930.0002233407235280.05890016873331209540.2161
Colorectal cancerAustria64350.0007558096098670.004305320463340.223214676399966332.6939
ObesityDenmark1691236.84409743526e-055.94795436482e-050.253658034531295442.5964
Liver cirrhosisChina1201148.42219293511e-057.8138969463e-050.3212363598492194373.7109
Type II diabetesSweden53920.0006764420833520.0003055448877790.4145935659251338045.3099
Type II diabetesDenmark752777.06062926601e-056.5008174575e-050.7071874383972493081.7189
Ulcerative colitisSpain78660.0002292117218010.0002233407235280.7783218682622527683.3806
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382