MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-10-30 23:00:32 PST
Job id & description: 2152, elen_2452
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 90%, 1e-10
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
6450254344666342CompleteK00184COG0437ActinobacteriaEggerthella100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusEggerthella0.6232.68e-2011.26e-198
speciesEggerthella_lenta0.6181.14e-1972.69e-195
speciesEggerthella_unclassified0.6066.16e-1889.69e-186
genusCoprobacillus0.321.2e-451.42e-43
genusGordonibacter0.3152.27e-441.79e-42
speciesGordonibacter_pamelaeae0.3152.27e-441.79e-42
speciesLachnospiraceae_bacterium_1_4_56FAA0.2972.05e-391.38e-37
speciesCoprobacillus_unclassified0.2963.41e-392.01e-37
genusBlautia0.2941.13e-385.93e-37
speciesLachnospiraceae_bacterium_5_1_57FAA0.2884.02e-371.9e-35
speciesClostridium_ramosum0.2831.11e-354.76e-34
speciesBlautia_producta0.2812.58e-351.01e-33
speciesClostridium_clostridioforme0.2634.71e-311.71e-29
speciesClostridium_bolteae0.2553.13e-291.06e-27
orderCoriobacteriales0.2545.65e-291.67e-27
familyCoriobacteriaceae0.2545.65e-291.67e-27
speciesRuminococcus_torques0.247.87e-262.19e-24
speciesClostridium_hathewayi0.2391.16e-253.04e-24
speciesClostridium_citroniae0.2363.5e-258.69e-24
speciesRuminococcus_gnavus0.2355.78e-251.36e-23
speciesClostridiales_bacterium_1_7_47FAA0.2331.86e-244.18e-23
genusSolobacterium0.2281.55e-233.18e-22
speciesSolobacterium_moorei0.2281.55e-233.18e-22
phylumActinobacteria0.2256.58e-231.24e-21
classActinobacteria0.2256.58e-231.24e-21
speciesClostridium_symbiosum0.2222.09e-223.79e-21
genusActinomyces0.2181.8e-213.15e-20
familyActinomycetaceae0.2172.77e-214.67e-20
speciesErysipelotrichaceae_bacterium_2_2_44A0.2148.67e-211.41e-19
speciesAnaerotruncus_colihominis0.2062.02e-193.18e-18
genusLachnospiraceae_noname0.2045.81e-198.85e-18
speciesErysipelotrichaceae_bacterium_6_1_450.1984.69e-186.92e-17
familyPrevotellaceae-0.1951.59e-172.27e-16
genusFlavonifractor0.1951.72e-172.28e-16
speciesFlavonifractor_plautii0.1951.72e-172.28e-16
genusAnaerostipes0.1951.74e-172.28e-16
speciesClostridium_asparagiforme0.191.33e-161.7e-15
speciesEggerthella_sp_1_3_56FAA0.1891.92e-162.38e-15
speciesErysipelotrichaceae_bacterium_3_1_530.1874.14e-165.01e-15
speciesLachnospiraceae_bacterium_5_1_63FAA0.1864.8e-165.66e-15
speciesBlautia_hydrogenotrophica0.1857.01e-168.07e-15
speciesLachnospiraceae_bacterium_6_1_63FAA0.1849.52e-161.07e-14
speciesAnaerostipes_unclassified0.1841.24e-151.36e-14
speciesRuminococcus_sp_5_1_39BFAA0.1821.86e-152e-14
genusClostridiales_noname0.1813.28e-153.44e-14
orderActinomycetales0.1813.35e-153.44e-14
familySutterellaceae-0.1813.61e-153.63e-14
orderBacillales0.1771.39e-141.37e-13
familyBacillales_noname0.1761.64e-141.55e-13
genusGemella0.1761.64e-141.55e-13
speciesAlistipes_shahii-0.1761.87e-141.73e-13
genusClostridium0.1735.85e-145.25e-13
familyClostridiaceae0.1725.89e-145.25e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1728.2e-147.17e-13
genusRuminococcus0.1719.38e-148.05e-13
speciesAlistipes_senegalensis-0.171.46e-131.23e-12
classBetaproteobacteria-0.1682.89e-132.39e-12
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1664.34e-133.53e-12
genusOdoribacter-0.1665.31e-134.25e-12
orderBurkholderiales-0.1656.29e-134.95e-12
genusPropionibacterium0.1649.48e-137.34e-12
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1641.04e-127.92e-12
speciesEubacterium_eligens-0.1631.22e-129.14e-12
speciesEubacterium_sp_3_1_310.1621.99e-121.47e-11
speciesOdoribacter_splanchnicus-0.1541.87e-111.36e-10
speciesErysipelotrichaceae_bacterium_21_30.1515.38e-113.85e-10
orderBifidobacteriales0.157.94e-115.51e-10
familyBifidobacteriaceae0.157.94e-115.51e-10
speciesDorea_formicigenerans0.1498.47e-115.79e-10
speciesLachnospiraceae_bacterium_2_1_58FAA0.1499.49e-116.4e-10
speciesEubacterium_limosum0.1499.94e-116.61e-10
genusBifidobacterium0.1491.06e-106.85e-10
speciesSubdoligranulum_sp_4_3_54A2FAA0.1491.06e-106.85e-10
speciesBifidobacterium_longum0.1481.11e-107.08e-10
familyClostridiales_noname0.1481.13e-107.11e-10
genusHoldemania0.1481.46e-109.07e-10
speciesEnterococcus_faecium0.1471.61e-109.87e-10
speciesPrevotella_copri-0.1471.79e-101.08e-09
genusPrevotella-0.1462.16e-101.29e-09
familyClostridiales_Family_XI_Incertae_Sedis0.1452.64e-101.56e-09
speciesPrevotella_stercorea-0.1452.81e-101.64e-09
genusFaecalibacterium-0.1453.16e-101.8e-09
speciesFaecalibacterium_prausnitzii-0.1453.16e-101.8e-09
speciesStreptococcus_sanguinis0.1444.07e-102.29e-09
genusDorea0.1435.46e-103.03e-09
genusClostridiaceae_noname0.1435.89e-103.2e-09
speciesClostridiaceae_bacterium_JC1180.1435.89e-103.2e-09
genusStreptococcus0.1418.12e-104.36e-09
familyStreptococcaceae0.1419.39e-104.98e-09
familyBacteroidales_noname-0.141.12e-095.75e-09
genusBacteroidales_noname-0.141.12e-095.75e-09
speciesBacteroidales_bacterium_ph8-0.141.12e-095.75e-09
phylumBacteroidetes-0.1382.36e-091.17e-08
classBacteroidia-0.1382.36e-091.17e-08
orderBacteroidales-0.1382.36e-091.17e-08
speciesParabacteroides_merdae-0.1372.67e-091.31e-08
speciesLactobacillus_rhamnosus0.1372.77e-091.35e-08
speciesEubacterium_hallii0.1363.19e-091.54e-08
speciesBacteroides_plebeius-0.1363.72e-091.77e-08
speciesEubacterium_biforme-0.1363.95e-091.86e-08
speciesParaprevotella_xylaniphila-0.1355.01e-092.34e-08
speciesAlistipes_putredinis-0.1355.17e-092.39e-08
genusEnterococcus0.1336.84e-093.13e-08
familyEnterococcaceae0.1337.93e-093.6e-08
speciesSutterella_wadsworthensis-0.1329.44e-094.24e-08
classBacilli0.1329.92e-094.42e-08
speciesStreptococcus_mitis_oralis_pneumoniae0.1321.1e-084.81e-08
genusSutterella-0.1321.11e-084.81e-08
speciesHoldemania_sp_AP20.1321.11e-084.81e-08
speciesRuminococcus_obeum0.1311.16e-084.98e-08
orderLactobacillales0.1311.18e-085.02e-08
genusOxalobacter-0.131.5e-086.27e-08
speciesOxalobacter_formigenes-0.131.5e-086.27e-08
speciesParaprevotella_unclassified-0.131.54e-086.36e-08
familyPropionibacteriaceae0.131.55e-086.36e-08
speciesClostridium_sp_KLE_17550.131.64e-086.67e-08
genusParaprevotella-0.131.72e-086.94e-08
speciesPropionibacterium_freudenreichii0.1292.2e-088.8e-08
speciesAlistipes_finegoldii-0.1282.57e-081.02e-07
phylumEuryarchaeota-0.1282.78e-081.09e-07
genusBarnesiella-0.1264.31e-081.67e-07
speciesBarnesiella_intestinihominis-0.1264.31e-081.67e-07
speciesDialister_invisus0.1255.55e-082.13e-07
speciesEubacterium_siraeum-0.1255.99e-082.28e-07
speciesCoprococcus_sp_ART55_1-0.1256.04e-082.28e-07
classMethanobacteria-0.1256.41e-082.36e-07
orderMethanobacteriales-0.1256.41e-082.36e-07
familyMethanobacteriaceae-0.1256.41e-082.36e-07
speciesMethanobrevibacter_smithii-0.1238.7e-083.18e-07
speciesLactobacillus_plantarum0.1239.13e-083.31e-07
familyOxalobacteraceae-0.1231.01e-073.64e-07
genusMethanobrevibacter-0.1221.16e-074.15e-07
speciesParaprevotella_clara-0.1211.56e-075.54e-07
speciesEubacterium_dolichum0.121.94e-076.83e-07
speciesStreptococcus_gordonii0.1192.39e-078.36e-07
speciesStreptococcus_salivarius0.1174e-071.39e-06
genusPhascolarctobacterium-0.1164.98e-071.7e-06
speciesPhascolarctobacterium_succinatutens-0.1164.98e-071.7e-06
speciesButyrivibrio_crossotus-0.1156.86e-072.33e-06
genusButyrivibrio-0.1138.94e-073.01e-06
speciesAnaerostipes_hadrus0.1139.22e-073.09e-06
genusCoprobacter-0.1139.83e-073.24e-06
speciesCoprobacter_fastidiosus-0.1139.83e-073.24e-06
speciesRoseburia_hominis-0.1121.21e-063.97e-06
speciesClostridium_spiroforme0.1121.22e-063.97e-06
speciesStreptococcus_anginosus0.1111.36e-064.4e-06
genusButyricicoccus0.1111.53e-064.88e-06
speciesButyricicoccus_pullicaecorum0.1111.53e-064.88e-06
speciesStreptococcus_mutans0.111.86e-065.89e-06
speciesRoseburia_inulinivorans-0.1092.12e-066.67e-06
familyLeuconostocaceae0.1092.46e-067.69e-06
speciesStreptococcus_thermophilus0.1083.13e-069.72e-06
speciesParvimonas_unclassified0.1073.64e-061.12e-05
genusParvimonas0.1073.65e-061.12e-05
speciesStreptococcus_parasanguinis0.1073.86e-061.18e-05
genusCatenibacterium-0.1055.57e-061.67e-05
speciesCatenibacterium_mitsuokai-0.1055.57e-061.67e-05
speciesDesulfovibrio_piger-0.1055.74e-061.71e-05
familyPorphyromonadaceae-0.1046.26e-061.83e-05
classErysipelotrichia0.1046.27e-061.83e-05
orderErysipelotrichales0.1046.27e-061.83e-05
familyErysipelotrichaceae0.1046.27e-061.83e-05
speciesDialister_succinatiphilus-0.1037.56e-062.19e-05
genusLeuconostoc0.1029.25e-062.66e-05
familyLachnospiraceae0.1029.5e-062.72e-05
speciesClostridium_bartlettii0.1021.08e-053.07e-05
genusSutterellaceae_unclassified-0.1021.09e-053.08e-05
speciesBacteroides_eggerthii-0.1011.11e-053.12e-05
speciesCoriobacteriaceae_bacterium_phI0.1011.19e-053.32e-05
genusPeptostreptococcus0.1011.22e-053.39e-05
speciesLactobacillus_ruminis-0.1011.27e-053.51e-05
speciesBacteroides_coprocola-0.11.61e-054.42e-05
genusCoriobacteriaceae_noname0.0982.1e-055.73e-05
familyRikenellaceae-0.0982.37e-056.39e-05
genusAlistipes-0.0982.37e-056.39e-05
speciesStreptococcus_australis0.0972.48e-056.65e-05
speciesClostridium_leptum0.0972.51e-056.69e-05
speciesBacteroides_dorei-0.0972.84e-057.53e-05
genusRothia0.0972.89e-057.62e-05
familyMicrococcaceae0.0963.05e-058e-05
speciesLactobacillus_sanfranciscensis0.0963.39e-058.84e-05
genusPeptoniphilus0.0954.16e-050.000108
genusHaemophilus-0.0944.88e-050.000126
speciesCoprococcus_eutactus-0.0935.26e-050.000135
speciesHaemophilus_parainfluenzae-0.0935.7e-050.000145
speciesLactobacillus_delbrueckii0.0935.94e-050.000151
speciesLachnospiraceae_bacterium_1_1_57FAA0.0926.44e-050.000163
orderPasteurellales-0.0927.12e-050.000178
familyPasteurellaceae-0.0927.12e-050.000178
genusRoseburia-0.0927.26e-050.00018
familyLactobacillaceae0.0927.32e-050.000181
genusDesulfovibrio-0.0918.43e-050.000207
speciesCoprobacillus_sp_D60.099.29e-050.000227
speciesRothia_mucilaginosa0.0890.0001070.00026
speciesHoldemania_unclassified0.0890.0001080.000261
speciesBacteroides_finegoldii-0.0890.000110.000265
familyAcidaminococcaceae-0.0880.0001280.000307
genusMitsuokella-0.0870.0001560.000372
speciesRuminococcus_sp_JC3040.0870.0001660.000394
speciesBifidobacterium_breve0.0870.0001760.000415
speciesMitsuokella_multacida-0.0860.0001940.000456
speciesLactobacillus_casei_paracasei0.0860.0002090.000488
speciesClostridium_sp_ATCC_BAA_4420.0850.0002340.000544
speciesMitsuokella_unclassified-0.0840.000260.000602
genusLactobacillus0.0840.0002870.000661
genusAdlercreutzia0.0830.0003340.000762
speciesAdlercreutzia_equolifaciens0.0830.0003340.000762
speciesBifidobacterium_dentium0.0830.0003370.000765
speciesClostridium_nexile0.0830.000350.00079
classClostridia0.0810.0004320.000966
orderClostridiales0.0810.0004320.000966
genusLactococcus0.0810.000470.00105
speciesCoprobacillus_sp_29_10.0790.0005910.00131
speciesLactococcus_lactis0.0790.0006210.00137
speciesAlistipes_indistinctus-0.0790.000640.00141
speciesClostridium_sp_L2_50-0.0780.000690.00151
speciesLactobacillus_gasseri0.0780.0006950.00151
speciesOscillibacter_sp_KLE_17450.0780.0007660.00166
speciesCollinsella_unclassified0.0770.00080.00172
speciesPeptostreptococcus_anaerobius0.0770.0009250.00198
familyPeptostreptococcaceae0.0760.0009830.0021
speciesCollinsella_aerofaciens-0.0760.001010.00215
phylumFirmicutes0.0760.001080.00228
classNegativicutes-0.0750.001090.00228
orderSelenomonadales-0.0750.001090.00228
speciesBacteroides_cellulosilyticus-0.0750.001090.00228
familyStaphylococcaceae0.0750.001130.00234
genusErysipelotrichaceae_noname0.0750.001130.00234
speciesBacteroides_caccae-0.0750.001140.00235
speciesPrevotella_bivia0.0750.001220.00249
speciesBacteroides_faecis-0.0750.001220.00249
speciesPeptostreptococcus_stomatis0.0750.001230.0025
speciesHoldemania_filiformis0.0730.001510.00306
genusPeptostreptococcaceae_noname0.0730.001540.00311
speciesBifidobacterium_pseudocatenulatum0.0730.001650.00331
familyOscillospiraceae0.0720.001740.00347
genusOscillibacter0.0720.001740.00347
speciesEscherichia_coli0.0720.001860.00369
speciesStreptococcus_vestibularis0.0710.002070.00409
genusDialister0.0710.002250.00442
speciesEnterococcus_faecalis0.070.002290.00448
speciesStreptococcus_phage_Sfi210.070.002330.00454
speciesBacteroides_salyersiae-0.070.002420.0047
speciesRuminococcus_bromii0.0690.002660.00515
speciesBacteroides_intestinalis-0.0690.002690.00518
genusWeissella0.0690.002730.00524
speciesSubdoligranulum_unclassified-0.0690.002790.00533
speciesGemella_morbillorum0.0690.002870.00546
genusParabacteroides-0.0690.003010.00571
speciesMethanobrevibacter_unclassified-0.0680.003140.00593
speciesOlsenella_unclassified-0.0680.003230.00607
speciesRuminococcus_champanellensis-0.0670.00350.00656
genusEscherichia0.0670.003950.00737
speciesBifidobacterium_animalis0.0660.004080.00757
genusStaphylococcus0.0660.004090.00757
speciesBacteroides_coprophilus-0.0650.004910.00905
genusPorphyromonas0.0650.005050.00927
genusPantoea0.0640.00580.0106
speciesPantoea_unclassified0.0640.00580.0106
genusButyricimonas-0.0620.007140.0129
speciesButyricimonas_synergistica-0.0620.007140.0129
speciesAlistipes_unclassified0.0620.007490.0135
genusMegasphaera-0.0620.007510.0135
speciesAnaerotruncus_unclassified-0.0620.007620.0136
speciesOscillibacter_unclassified0.0620.007630.0136
speciesMegasphaera_unclassified-0.0610.008020.0142
speciesAlistipes_onderdonkii-0.0610.008110.0143
speciesFusobacterium_mortiferum-0.0610.00870.0153
speciesBacteroides_massiliensis-0.060.008920.0157
speciesBacteroides_pectinophilus-0.060.009080.0159
speciesMegamonas_rupellensis-0.060.009170.016
genusSubdoligranulum-0.0580.01190.0207
speciesRuminococcus_callidus-0.0580.01260.0218
speciesAlistipes_sp_HGB5-0.0570.01310.0226
speciesBacteroides_vulgatus-0.0570.01330.0228
speciesLactobacillus_acidophilus0.0570.01360.0233
speciesCollinsella_intestinalis0.0570.01390.0237
speciesWeissella_cibaria0.0560.01610.0273
speciesParabacteroides_goldsteinii-0.0550.01790.0303
orderPseudomonadales0.0550.01820.0307
speciesMegamonas_hypermegale-0.0540.01890.0317
genusParasutterella-0.0540.020.0334
speciesParasutterella_excrementihominis-0.0540.020.0334
orderEnterobacteriales0.0530.02120.0351
familyEnterobacteriaceae0.0530.02120.0351
speciesMegamonas_unclassified-0.0530.02210.0365
genusMegamonas-0.0530.02220.0365
speciesDorea_longicatena0.0530.0230.0377
speciesBifidobacterium_angulatum-0.0520.02490.0407
speciesVeillonella_unclassified-0.0520.02510.0409
speciesBacteroides_xylanisolvens-0.0520.02530.0409
speciesParabacteroides_distasonis-0.0520.02530.0409
speciesLactobacillus_oris0.0520.02570.0414
speciesMegamonas_funiformis-0.0510.02650.0425
genusCoprococcus-0.050.02910.0466
speciesPorphyromonas_asaccharolytica0.050.03190.0507
speciesPorphyromonas_uenonis0.050.0320.0507
speciesRoseburia_intestinalis-0.050.0320.0507
speciesBacteroides_clarus-0.0490.03280.0518
speciesStreptococcus_infantarius0.0490.03460.0544
genusOlsenella-0.0490.03470.0544
speciesBifidobacterium_adolescentis-0.0480.03640.0569
speciesLeuconostoc_lactis0.0470.04180.0651
speciesDesulfovibrio_desulfuricans-0.0460.0470.073
speciesParabacteroides_sp_D13-0.0460.04740.0734
speciesMegasphaera_elsdenii-0.0450.05210.0804
speciesParabacteroides_johnsonii-0.0450.05270.081
speciesKlebsiella_pneumoniae-0.0450.05370.0823
speciesEubacterium_rectale-0.0440.05550.0848
speciesPrevotella_buccae-0.0430.06390.0973
genusActinobacillus-0.0430.06470.0979
speciesActinobacillus_unclassified-0.0430.06470.0979
speciesAcidaminococcus_fermentans-0.0430.06520.0983
speciesCoprococcus_catus-0.0420.06760.102
speciesRuminococcus_lactaris-0.0420.06940.104
genusEnterobacter-0.0420.07110.106
speciesVeillonella_atypica-0.0410.07420.11
familyMyoviridae-0.0410.07530.112
speciesLactobacillus_fermentum0.0410.07880.117
speciesKlebsiella_oxytoca0.040.08080.119
speciesSlackia_piriformis-0.040.08180.12
phylumProteobacteria-0.040.08280.121
genusMethanosphaera-0.040.08730.127
speciesMethanosphaera_stadtmanae-0.040.08730.127
speciesBacteroides_stercoris-0.040.08730.127
speciesStreptococcus_pasteurianus0.0390.09080.131
genusVeillonella-0.0390.09110.131
speciesWeissella_confusa0.0390.09390.135
speciesEscherichia_unclassified0.0380.09880.142
speciesParabacteroides_unclassified0.0380.09920.142
speciesLachnospiraceae_bacterium_2_1_46FAA0.0380.10.143
speciesLactococcus_phage_bIL670.0380.1010.144
familyVeillonellaceae-0.0380.1040.147
speciesBifidobacterium_bifidum0.0360.1220.172
speciesHaemophilus_paraphrohaemolyticus-0.0350.1260.177
speciesEnterobacter_cloacae-0.0350.1260.177
speciesLachnospiraceae_bacterium_7_1_58FAA0.0350.1320.185
speciesStreptococcus_lutetiensis0.0350.1340.187
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0350.1350.188
genusCollinsella-0.0340.1370.19
speciesLactococcus_phage_936_sensu_lato-0.0340.1380.191
speciesEnterobacter_aerogenes-0.0340.1390.192
speciesKlebsiella_sp_MS_92_30.0340.1430.196
speciesAcidaminococcus_unclassified0.0340.1430.196
speciesBacteroides_fragilis0.0340.1460.2
genusTunalikevirus-0.0320.1610.22
speciesVeillonella_dispar-0.0320.1640.223
speciesAggregatibacter_segnis-0.0320.170.231
genusKlebsiella-0.0320.1720.232
classDeltaproteobacteria-0.0320.1730.232
orderDesulfovibrionales-0.0320.1730.232
familyDesulfovibrionaceae-0.0320.1730.232
speciesBacteroides_sp_4_3_47FAA-0.0310.1760.235
speciesClostridium_perfringens-0.0310.1860.248
speciesBacteroides_fluxus0.030.190.253
genusPseudoflavonifractor-0.030.1910.253
speciesPseudoflavonifractor_capillosus-0.030.1910.253
familyPodoviridae0.030.1980.26
speciesKlebsiella_phage_KP36-0.030.1980.26
genusAggregatibacter-0.0290.2060.27
familyRuminococcaceae0.0290.210.275
speciesBacteroides_thetaiotaomicron-0.0290.2110.275
speciesFusobacterium_ulcerans-0.0290.2130.277
speciesFusobacterium_nucleatum0.0280.2330.302
genusAnaerotruncus0.0270.2390.309
speciesButyrivibrio_unclassified-0.0270.240.31
speciesLactobacillus_vaginalis0.0260.2520.324
phylumSynergistetes0.0260.2550.324
classSynergistia0.0260.2550.324
orderSynergistales0.0260.2550.324
familySynergistaceae0.0260.2550.324
speciesVeillonella_parvula-0.0260.2580.327
genusPyramidobacter0.0260.2590.327
speciesPyramidobacter_piscolens0.0260.2590.327
familyBurkholderiales_noname-0.0250.2740.344
speciesBacteroides_nordii-0.0250.2740.344
speciesCampylobacter_concisus-0.0250.2750.344
speciesOdoribacter_unclassified-0.0250.2780.347
genusBurkholderiales_noname-0.0250.2790.347
speciesBurkholderiales_bacterium_1_1_47-0.0250.2790.347
genusMorganella0.0230.3140.387
genusSlackia-0.0230.3140.387
speciesMorganella_morganii0.0230.3140.387
genusC2likevirus0.0230.3280.403
speciesBacteroides_uniformis-0.0220.3420.419
familyViruses_noname-0.0220.3480.424
genusViruses_noname-0.0220.3480.424
speciesBacteroides_salanitronis-0.0210.3590.437
classGammaproteobacteria0.0210.360.437
speciesOscillibacter_sp_KLE_17280.0210.3640.441
genusSiphoviridae_noname0.0210.3650.441
speciesProteus_mirabilis0.020.3790.455
speciesLactobacillus_salivarius0.020.3790.455
speciesLachnospiraceae_bacterium_3_1_46FAA-0.020.3870.464
speciesLactococcus_phage_phi7-0.020.3960.473
speciesC2likevirus_unclassified0.0190.4030.48
speciesSutterella_parvirubra-0.0170.4530.539
speciesLactobacillus_reuteri0.0170.470.557
familyBacteroidaceae-0.0160.4810.568
genusBacteroides-0.0160.4810.568
genusLambdalikevirus-0.0160.4840.57
speciesEubacterium_ramulus0.0150.5090.598
speciesLactococcus_garvieae0.0150.5140.601
speciesLactococcus_phage_jm20.0150.5140.601
genusRuminococcaceae_noname-0.0150.5170.601
speciesRuminococcaceae_bacterium_D16-0.0150.5170.601
speciesLactobacillus_amylovorus0.0150.5240.608
speciesLactobacillus_mucosae-0.0140.5420.627
speciesDorea_unclassified0.0140.5440.628
speciesAlistipes_sp_AP110.0140.5570.641
orderViruses_noname0.0130.5640.647
speciesBacteroides_sp_3_1_190.0130.5650.647
orderAeromonadales-0.0130.570.65
genusCitrobacter0.0130.570.65
speciesAcidaminococcus_intestini-0.0130.5750.654
speciesCollinsella_tanakaei-0.0120.5940.674
genusMyoviridae_noname-0.0120.6140.695
familySiphoviridae0.0110.6280.709
speciesRoseburia_unclassified0.0110.6360.716
speciesBacteroides_sp_1_1_6-0.0110.6470.727
familySuccinivibrionaceae-0.010.6510.728
speciesHaemophilus_sputorum0.010.6510.728
speciesBacteroides_ovatus0.010.6610.738
genusAcidaminococcaceae_unclassified-0.0090.6880.766
speciesCitrobacter_freundii0.0090.6910.767
speciesBilophila_wadsworthia0.0090.6970.772
genusTuricibacter-0.0080.7180.789
speciesEubacterium_cylindroides-0.0080.7180.789
genusSuccinatimonas-0.0080.7190.789
speciesSuccinatimonas_hippei-0.0080.7190.789
speciesBacteroides_barnesiae-0.0080.7420.813
genusAcidaminococcus0.0070.7490.816
speciesBifidobacterium_catenulatum0.0070.7560.816
speciesTuricibacter_sanguinis-0.0070.7610.816
genusFusobacterium0.0070.7620.816
phylumVerrucomicrobia0.0070.7630.816
classVerrucomicrobiae0.0070.7630.816
orderVerrucomicrobiales0.0070.7630.816
familyVerrucomicrobiaceae0.0070.7630.816
genusAkkermansia0.0070.7630.816
speciesAkkermansia_muciniphila0.0070.7630.816
familyFusobacteriaceae0.0070.7640.816
genusEubacterium-0.0070.7660.816
speciesEnterobacteria_phage_HK544-0.0070.7710.82
familyEubacteriaceae-0.0060.7830.831
speciesTuricibacter_unclassified-0.0060.790.833
classEpsilonproteobacteria-0.0060.7910.833
orderCampylobacterales-0.0060.7910.833
speciesEubacterium_ventriosum-0.0050.8130.855
speciesLactobacillus_crispatus0.0050.8180.858
speciesBilophila_unclassified0.0050.8220.86
speciesCoprococcus_comes0.0050.8390.876
speciesBacteroides_sp_2_1_220.0040.8550.891
genusBilophila0.0040.8630.897
orderCaudovirales0.0040.870.903
speciesCitrobacter_unclassified0.0030.880.911
speciesMegasphaera_micronuciformis0.0030.90.93
speciesOdoribacter_laneus-0.0030.9020.93
phylumFusobacteria0.0030.910.932
classFusobacteriia0.0030.910.932
orderFusobacteriales0.0030.910.932
speciesParabacteroides_sp_20_3-0.0030.9130.933
speciesKlebsiella_unclassified-0.0020.9260.942
speciesPeptostreptococcaceae_noname_unclassified-0.0020.9260.942
speciesBacteroides_oleiciplenus-0.0020.9410.954
phylumViruses_noname0.0020.9440.954
classViruses_noname0.0020.9440.954
familyCampylobacteraceae-0.0020.9480.956
genusProteus-0.0010.9730.977
genusCampylobacter0.0010.9730.977
speciesLactococcus_phage_P6800.00.9830.985
speciesFusobacterium_varium0.00.9990.999
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.0005656534393120.0001045103685880.00029467183919310863.58901
Rheumatoid arthritisChina127980.0004222088488080.0004089873186740.018134133892315805.26895
Crohns diseaseSpain17660.0004527309194390.0001664399277630.09102554194511340144.5586
ObesityDenmark1691234.73180327487e-052.98238742538e-050.2730147869241345244.234
Liver cirrhosisChina1201147.82412250115e-054.38787777285e-050.3647168403372263276.0254
Ulcerative colitisSpain78660.0002332202526170.0001664399277630.370613401741590952.4807
Type II diabetesDenmark752776.41496801016e-054.02873034178e-050.4976511747392044267.0076
Type II diabetesSweden53920.0005087834819280.0002953227479410.711311844332164573.2983
Colorectal cancerAustria64350.0006873893736530.003730851911490.9243306360962770193.7238
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382