MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-03 02:09:15 PST
Job id & description: 2155, RumGna_TDC
Query type: protein
Count queries & homologs: 1, 35
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|A7B1V0|TRPDC_RUMGV972000Lack 5'-endK01593COG0076FirmicutesBlautia100.099.39100.0
sp|A7B1V0|TRPDC_RUMGV1051560CompleteK01593COG0076FirmicutesBlautia97.55100.092.26
sp|A7B1V0|TRPDC_RUMGV1047184CompleteK01593COG0076FirmicutesBlautia97.1499.3792.44
sp|A7B1V0|TRPDC_RUMGV912402CompleteK01593COG0076Firmicutesunknown98.5795.6476.4
sp|A7B1V0|TRPDC_RUMGV1039752CompleteK01593COG0076unknownunknown97.1499.1777.31
sp|A7B1V0|TRPDC_RUMGV1059168CompleteK01593COG0076Firmicutesunknown97.35100.077.15
sp|A7B1V0|TRPDC_RUMGV990955CompleteK01593COG0076Firmicutesunknown98.7898.9875.62
sp|A7B1V0|TRPDC_RUMGV1062773CompleteK01593COG0076FirmicutesBlautia97.14100.076.47
sp|A7B1V0|TRPDC_RUMGV1062982CompleteK01593COG0076FirmicutesBlautia97.14100.075.84
sp|A7B1V0|TRPDC_RUMGV991403Lack 5'-endK01593COG0076unknownunknown98.7899.1872.99
sp|A7B1V0|TRPDC_RUMGV941342CompleteK01593COG0076unknownunknown98.9897.3973.25
sp|A7B1V0|TRPDC_RUMGV1082374CompleteK01593COG0076Firmicutesunknown96.1299.7972.19
sp|A7B1V0|TRPDC_RUMGV966151CompleteK01593COG0076unknownunknown97.3596.5671.49
sp|A7B1V0|TRPDC_RUMGV1534424Lack 5'-endK01593COG0076FirmicutesBlautia83.8899.7677.86
sp|A7B1V0|TRPDC_RUMGV1058454CompleteK01593COG0076Firmicutesunknown96.5398.9561.95
sp|A7B1V0|TRPDC_RUMGV1111887CompleteK01593COG0076unknownunknown94.6998.2954.96
sp|A7B1V0|TRPDC_RUMGV1035762CompleteK13745COG0076unknownunknown95.9297.7153.4
sp|A7B1V0|TRPDC_RUMGV1010873CompleteK01593COG0076unknownunknown93.6794.6453.38
sp|A7B1V0|TRPDC_RUMGV1019564CompleteK13745COG0076FirmicutesHoldemania95.3196.4950.54
sp|A7B1V0|TRPDC_RUMGV1040521CompleteK01593COG0076unknownunknown94.0896.4652.16
sp|A7B1V0|TRPDC_RUMGV908708CompleteK01593COG0076unknownunknown91.4388.5452.23
sp|A7B1V0|TRPDC_RUMGV833595CompleteK13745COG0076unknownunknown95.5189.4849.79
sp|A7B1V0|TRPDC_RUMGV1046061CompleteK01593COG0076unknownunknown91.8493.9551.11
sp|A7B1V0|TRPDC_RUMGV1012287CompleteK13745COG0076unknownunknown92.8694.4350.0
sp|A7B1V0|TRPDC_RUMGV1050352CompleteK13745COG0076unknownunknown94.6997.0748.28
sp|A7B1V0|TRPDC_RUMGV1079212CompleteK01593COG0076unknownunknown91.8495.9847.8
sp|A7B1V0|TRPDC_RUMGV1062255CompleteK01593COG0076unknownunknown91.0294.7551.0
sp|A7B1V0|TRPDC_RUMGV1072049CompleteK01618COG0076unknownunknown92.8696.248.03
sp|A7B1V0|TRPDC_RUMGV989288CompleteK01593COG0076unknownunknown93.4794.0747.51
sp|A7B1V0|TRPDC_RUMGV954219CompleteK01593COG0076unknownunknown92.6591.7348.57
sp|A7B1V0|TRPDC_RUMGV1073535CompleteK01618COG0076unknownunknown93.8897.2646.64
sp|A7B1V0|TRPDC_RUMGV1958762Lack 5'-endK13745COG0076unknownunknown74.0898.156.75
sp|A7B1V0|TRPDC_RUMGV996800CompleteK13745COG0076ProteobacteriaEnterobacter80.282.9930.24
sp|A7B1V0|TRPDC_RUMGV988211CompleteK13745COG0076ProteobacteriaCitrobacter77.5579.830.28
sp|A7B1V0|TRPDC_RUMGV997441CompleteK13745COG0076ProteobacteriaEnterobacter80.282.9930.17
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.74.07e-2751.92e-272
speciesClostridium_bolteae0.57.19e-1191.7e-116
genusCoprobacillus0.4921.39e-1142.19e-112
speciesCoprobacillus_unclassified0.4761.97e-1062.32e-104
genusBlautia0.4741.85e-1051.75e-103
speciesLachnospiraceae_bacterium_9_1_43BFAA0.4561.06e-968.34e-95
speciesClostridium_ramosum0.4561.37e-969.24e-95
familyClostridiaceae0.4311.27e-857.49e-84
speciesClostridium_nexile0.4291.08e-845.66e-83
genusClostridium0.4291.5e-847.08e-83
speciesLachnospiraceae_bacterium_1_4_56FAA0.4163.61e-791.55e-77
genusEggerthella0.3964.2e-711.65e-69
speciesClostridium_symbiosum0.3941.4e-705.08e-69
speciesClostridium_hathewayi0.3934.12e-701.39e-68
speciesEggerthella_unclassified0.397.09e-692.23e-67
speciesLachnospiraceae_bacterium_6_1_63FAA0.3832.3e-666.78e-65
speciesClostridium_clostridioforme0.3796.15e-651.71e-63
speciesClostridiales_bacterium_1_7_47FAA0.3798.64e-652.27e-63
genusFlavonifractor0.3781.07e-642.53e-63
speciesFlavonifractor_plautii0.3781.07e-642.53e-63
familyFusobacteriaceae0.3721.96e-624.41e-61
phylumFusobacteria0.3692.57e-615.05e-60
classFusobacteriia0.3692.57e-615.05e-60
orderFusobacteriales0.3692.57e-615.05e-60
genusFusobacterium0.3677.4e-611.4e-59
speciesLachnospiraceae_bacterium_2_1_58FAA0.3452.63e-534.77e-52
speciesBlautia_producta0.3414.32e-527.55e-51
familyClostridiales_noname0.3415.47e-529.22e-51
orderEnterobacteriales0.3391.8e-512.83e-50
familyEnterobacteriaceae0.3391.8e-512.83e-50
speciesAnaerostipes_unclassified0.3252.29e-473.49e-46
genusEscherichia0.3213.77e-465.56e-45
speciesEscherichia_coli0.3145.61e-448.02e-43
speciesFusobacterium_ulcerans0.2972.57e-393.57e-38
speciesErysipelotrichaceae_bacterium_2_2_44A0.2964.96e-396.69e-38
classGammaproteobacteria0.291.5e-371.97e-36
speciesLachnospiraceae_bacterium_5_1_57FAA0.2781.44e-341.84e-33
genusClostridiales_noname0.2773.51e-344.36e-33
speciesRoseburia_hominis-0.2741.94e-332.35e-32
speciesAlistipes_senegalensis-0.2732.28e-332.69e-32
speciesEubacterium_dolichum0.271.33e-321.49e-31
speciesClostridium_citroniae0.271.33e-321.49e-31
speciesOdoribacter_splanchnicus-0.2661.29e-311.42e-30
genusOdoribacter-0.2642.72e-312.92e-30
speciesEggerthella_lenta0.2643.62e-313.8e-30
speciesAlistipes_shahii-0.2627.82e-318.02e-30
genusFaecalibacterium-0.2628.27e-318.13e-30
speciesFaecalibacterium_prausnitzii-0.2628.27e-318.13e-30
speciesEubacterium_eligens-0.262.89e-302.78e-29
genusCoprococcus-0.2531.02e-289.63e-28
phylumProteobacteria0.2531.15e-281.06e-27
speciesSubdoligranulum_unclassified-0.2522.13e-281.93e-27
speciesCoprococcus_catus-0.2472.26e-272.01e-26
speciesClostridium_asparagiforme0.2448.36e-277.31e-26
speciesFusobacterium_varium0.2422.17e-261.86e-25
genusSubdoligranulum-0.245.54e-264.67e-25
familyBacteroidales_noname-0.2363.9e-253.12e-24
genusBacteroidales_noname-0.2363.9e-253.12e-24
speciesBacteroidales_bacterium_ph8-0.2363.9e-253.12e-24
speciesRuminococcus_torques0.2323.23e-242.54e-23
speciesEubacterium_rectale-0.2314.93e-243.81e-23
speciesBacteroides_fragilis0.2258.44e-236.43e-22
genusButyrivibrio-0.2231.73e-221.3e-21
speciesAlistipes_putredinis-0.2223.21e-222.37e-21
speciesEubacterium_siraeum-0.2191.05e-217.62e-21
familyRikenellaceae-0.2181.84e-211.3e-20
genusAlistipes-0.2181.84e-211.3e-20
speciesErysipelotrichaceae_bacterium_21_30.2162.93e-212.03e-20
genusKlebsiella0.2154.97e-213.4e-20
speciesKlebsiella_pneumoniae0.2131.3e-208.77e-20
speciesAlistipes_finegoldii-0.2112.59e-201.72e-19
speciesRuminococcus_lactaris-0.2081.12e-197.34e-19
genusLachnospiraceae_noname0.2045.28e-193.41e-18
speciesRuminococcus_callidus-0.2036.81e-194.34e-18
speciesAnaerotruncus_colihominis0.22.47e-181.55e-17
genusParaprevotella-0.1993.97e-182.47e-17
familyActinomycetaceae0.1986.21e-183.81e-17
familyPrevotellaceae-0.1977.32e-184.43e-17
genusActinomyces0.1977.71e-184.61e-17
genusSolobacterium0.1979.01e-185.25e-17
speciesSolobacterium_moorei0.1979.01e-185.25e-17
speciesFusobacterium_nucleatum0.1979.16e-185.27e-17
familyEnterococcaceae0.1961.16e-176.6e-17
speciesCitrobacter_unclassified0.1961.29e-177.25e-17
speciesParaprevotella_unclassified-0.1951.52e-178.44e-17
speciesCitrobacter_freundii0.1951.68e-179.22e-17
genusEnterococcus0.1951.77e-179.6e-17
familyBacillales_noname0.1951.99e-171.06e-16
genusGemella0.1951.99e-171.06e-16
speciesEubacterium_biforme-0.1943.09e-171.62e-16
speciesCoprococcus_sp_ART55_1-0.1933.71e-171.92e-16
genusCitrobacter0.1933.86e-171.98e-16
speciesStreptococcus_mitis_oralis_pneumoniae0.1933.96e-172.01e-16
speciesParaprevotella_xylaniphila-0.1934.11e-172.06e-16
genusPantoea0.191.07e-165.26e-16
speciesPantoea_unclassified0.191.07e-165.26e-16
speciesErysipelotrichaceae_bacterium_6_1_450.191.16e-165.64e-16
speciesLachnospiraceae_bacterium_2_1_46FAA0.191.17e-165.64e-16
speciesButyrivibrio_crossotus-0.1873.58e-161.71e-15
genusBarnesiella-0.1865.41e-162.53e-15
speciesBarnesiella_intestinihominis-0.1865.41e-162.53e-15
speciesFusobacterium_mortiferum0.1865.89e-162.73e-15
speciesEscherichia_unclassified0.1866.07e-162.78e-15
genusOxalobacter-0.1849.72e-164.37e-15
speciesOxalobacter_formigenes-0.1849.72e-164.37e-15
familyRuminococcaceae-0.1841.03e-154.59e-15
speciesEubacterium_ventriosum-0.1831.34e-155.91e-15
genusButyricicoccus0.1831.75e-157.58e-15
speciesButyricicoccus_pullicaecorum0.1831.75e-157.58e-15
genusEubacterium-0.1822.36e-151.01e-14
familyEubacteriaceae-0.1822.55e-151.08e-14
familyOxalobacteraceae-0.1812.66e-151.12e-14
speciesCoprococcus_eutactus-0.1812.97e-151.24e-14
orderBacillales0.1813.36e-151.39e-14
genusCatenibacterium-0.1813.48e-151.42e-14
speciesCatenibacterium_mitsuokai-0.1813.48e-151.42e-14
genusPeptostreptococcus0.1795.61e-152.26e-14
speciesCoprococcus_comes-0.1796.6e-152.64e-14
speciesEnterobacter_cloacae0.1789.58e-153.8e-14
speciesMethanobrevibacter_smithii-0.1771.08e-144.25e-14
familyStreptococcaceae0.1771.28e-144.99e-14
classErysipelotrichia0.1771.32e-145.02e-14
orderErysipelotrichales0.1771.32e-145.02e-14
familyErysipelotrichaceae0.1771.32e-145.02e-14
classMethanobacteria-0.1761.77e-146.58e-14
orderMethanobacteriales-0.1761.77e-146.58e-14
familyMethanobacteriaceae-0.1761.77e-146.58e-14
speciesParaprevotella_clara-0.1761.87e-146.9e-14
speciesAnaerotruncus_unclassified-0.1743.08e-141.13e-13
genusStreptococcus0.1743.39e-141.23e-13
speciesEubacterium_sp_3_1_310.1734.38e-141.58e-13
genusMethanobrevibacter-0.1734.66e-141.67e-13
speciesMegasphaera_micronuciformis0.1726.98e-142.48e-13
classBacilli0.1727.26e-142.56e-13
phylumEuryarchaeota-0.171.18e-134.1e-13
speciesEubacterium_ramulus-0.171.18e-134.1e-13
orderLactobacillales0.171.47e-135.06e-13
speciesBifidobacterium_adolescentis-0.1691.92e-136.57e-13
genusCoprobacter-0.1682.64e-138.9e-13
speciesCoprobacter_fastidiosus-0.1682.64e-138.9e-13
genusEnterobacter0.1656.25e-132.09e-12
speciesClostridium_sp_L2_50-0.1621.69e-125.62e-12
speciesBlautia_hydrogenotrophica0.1594.32e-121.43e-11
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1577.44e-122.44e-11
speciesRoseburia_inulinivorans-0.1561.18e-113.84e-11
speciesStreptococcus_anginosus0.1541.93e-116.24e-11
speciesPeptostreptococcus_stomatis0.1541.99e-116.39e-11
orderActinomycetales0.1533.37e-111.07e-10
speciesKlebsiella_oxytoca0.1524.01e-111.27e-10
genusMitsuokella-0.1515.56e-111.75e-10
familyLeuconostocaceae0.156.87e-112.15e-10
speciesMitsuokella_unclassified-0.1499.13e-112.84e-10
genusHoldemania0.1452.74e-108.45e-10
speciesSubdoligranulum_sp_4_3_54A2FAA0.1434.94e-101.51e-09
speciesEnterococcus_faecalis0.1426.93e-102.11e-09
genusAnaerostipes0.1411.04e-093.15e-09
speciesStreptococcus_sanguinis0.141.21e-093.64e-09
speciesLachnospiraceae_bacterium_8_1_57FAA-0.141.25e-093.73e-09
genusPhascolarctobacterium-0.1391.74e-095.13e-09
speciesPhascolarctobacterium_succinatutens-0.1391.74e-095.13e-09
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1381.94e-095.69e-09
orderBurkholderiales-0.1382.02e-095.89e-09
speciesLactobacillus_ruminis-0.1382.29e-096.63e-09
familySutterellaceae-0.1372.72e-097.83e-09
speciesPrevotella_buccae0.1372.77e-097.92e-09
speciesParabacteroides_merdae-0.1372.96e-098.42e-09
speciesAlistipes_indistinctus-0.1372.98e-098.42e-09
speciesClostridium_sp_ATCC_BAA_4420.1363.92e-091.1e-08
speciesClostridium_bartlettii0.1354.11e-091.15e-08
speciesErysipelotrichaceae_bacterium_3_1_530.1354.21e-091.17e-08
speciesBifidobacterium_dentium0.1354.59e-091.27e-08
speciesLactobacillus_salivarius0.1354.69e-091.27e-08
genusClostridiaceae_noname0.1354.7e-091.27e-08
speciesClostridiaceae_bacterium_JC1180.1354.7e-091.27e-08
speciesEubacterium_limosum0.1354.78e-091.29e-08
speciesBacteroides_pectinophilus-0.1346.06e-091.63e-08
familyPeptostreptococcaceae0.1337.04e-091.88e-08
genusMorganella0.1337.24e-091.91e-08
speciesMorganella_morganii0.1337.24e-091.91e-08
speciesEnterococcus_faecium0.1329.85e-092.58e-08
classBetaproteobacteria-0.1321.11e-082.89e-08
speciesStreptococcus_australis0.1311.15e-082.98e-08
genusWeissella0.131.53e-083.95e-08
speciesStreptococcus_vestibularis0.131.84e-084.72e-08
speciesStreptococcus_lutetiensis0.1292.42e-086.17e-08
speciesCollinsella_aerofaciens-0.1282.98e-087.56e-08
genusErysipelotrichaceae_noname0.1283.01e-087.6e-08
speciesDorea_longicatena-0.1283.03e-087.61e-08
speciesStreptococcus_pasteurianus0.1264.07e-081.02e-07
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1264.64e-081.15e-07
speciesWeissella_cibaria0.1255.54e-081.37e-07
speciesStreptococcus_gordonii0.1255.72e-081.41e-07
speciesCollinsella_intestinalis0.1256.15e-081.5e-07
speciesStreptococcus_salivarius0.1247.21e-081.75e-07
speciesRuminococcus_champanellensis-0.1247.31e-081.77e-07
speciesClostridium_perfringens0.1239.99e-082.41e-07
speciesKlebsiella_unclassified0.1221.32e-073.16e-07
speciesGemella_morbillorum0.121.76e-074.2e-07
genusParasutterella-0.1182.85e-076.73e-07
speciesParasutterella_excrementihominis-0.1182.85e-076.73e-07
genusRoseburia-0.1173.85e-079.04e-07
familyBacteroidaceae0.1164.59e-071.07e-06
genusBacteroides0.1164.59e-071.07e-06
speciesMethanobrevibacter_unclassified-0.1164.93e-071.14e-06
speciesSutterella_wadsworthensis-0.1165.24e-071.21e-06
speciesPrevotella_copri-0.1156.52e-071.49e-06
genusPeptostreptococcaceae_noname0.1156.53e-071.49e-06
speciesMitsuokella_multacida-0.1147.24e-071.64e-06
phylumVerrucomicrobia-0.1139.79e-072.16e-06
classVerrucomicrobiae-0.1139.79e-072.16e-06
orderVerrucomicrobiales-0.1139.79e-072.16e-06
familyVerrucomicrobiaceae-0.1139.79e-072.16e-06
genusAkkermansia-0.1139.79e-072.16e-06
speciesAkkermansia_muciniphila-0.1139.79e-072.16e-06
speciesClostridium_sp_KLE_17550.1121.3e-062.85e-06
speciesOlsenella_unclassified-0.1111.37e-062.99e-06
genusButyricimonas-0.111.68e-063.64e-06
speciesButyricimonas_synergistica-0.111.68e-063.64e-06
speciesDesulfovibrio_piger-0.111.75e-063.77e-06
genusDesulfovibrio-0.111.82e-063.9e-06
familyClostridiales_Family_XI_Incertae_Sedis0.112.03e-064.34e-06
genusSutterella-0.1092.46e-065.23e-06
genusCoriobacteriaceae_noname0.1083.13e-066.62e-06
genusPrevotella-0.1073.24e-066.83e-06
speciesCoriobacteriaceae_bacterium_phI0.1073.7e-067.76e-06
genusProteus0.1064.13e-068.63e-06
speciesClostridium_spiroforme0.1064.34e-069.02e-06
speciesStreptococcus_mutans0.1046.65e-061.38e-05
speciesStreptococcus_parasanguinis0.1046.92e-061.43e-05
genusLeuconostoc0.1047.23e-061.48e-05
genusGordonibacter0.11.42e-052.89e-05
speciesGordonibacter_pamelaeae0.11.42e-052.89e-05
genusMegasphaera0.0991.77e-053.59e-05
speciesParabacteroides_unclassified0.0982.05e-054.14e-05
speciesProteus_mirabilis0.0982.16e-054.34e-05
speciesHoldemania_filiformis0.0982.38e-054.76e-05
speciesHoldemania_sp_AP20.0972.84e-055.66e-05
speciesWeissella_confusa0.0953.62e-057.18e-05
speciesBacteroides_cellulosilyticus-0.0944.5e-058.89e-05
speciesButyrivibrio_unclassified-0.0935.44e-050.000107
speciesAlistipes_onderdonkii-0.0926.35e-050.000124
speciesRothia_mucilaginosa0.0917.45e-050.000145
speciesLactobacillus_fermentum0.0917.88e-050.000153
phylumActinobacteria0.0918.36e-050.000161
classActinobacteria0.0918.36e-050.000161
genusCampylobacter0.0918.71e-050.000167
speciesStreptococcus_infantarius0.099.55e-050.000182
speciesLactobacillus_gasseri0.0890.0001190.000226
familyMyoviridae0.0880.0001390.000263
speciesBifidobacterium_angulatum-0.0870.0001560.000295
familyMicrococcaceae0.0870.0001620.000305
genusRothia0.0870.0001650.000309
speciesBacteroides_coprophilus-0.0870.0001670.000312
genusPeptoniphilus0.0860.0001870.000347
familyLachnospiraceae0.0860.0001930.000357
familyCampylobacteraceae0.0860.0002040.000376
speciesLactococcus_garvieae0.0860.0002070.00038
speciesCoprobacillus_sp_D60.0830.0003140.000574
genusHaemophilus-0.0820.0003640.000663
speciesParvimonas_unclassified0.0820.0003760.000682
genusParvimonas0.0820.0003770.000682
genusOlsenella-0.0820.0003880.000699
speciesHaemophilus_parainfluenzae-0.0820.0004180.00075
speciesKlebsiella_sp_MS_92_30.0810.0004790.000856
orderPasteurellales-0.080.0004950.000878
familyPasteurellaceae-0.080.0004950.000878
speciesCampylobacter_concisus0.080.000510.000902
orderCoriobacteriales0.080.000540.000948
familyCoriobacteriaceae0.080.000540.000948
phylumBacteroidetes-0.080.0005740.000996
classBacteroidia-0.080.0005740.000996
orderBacteroidales-0.080.0005740.000996
genusMegamonas0.080.0005780.000999
genusMethanosphaera-0.0790.0006050.00104
speciesMethanosphaera_stadtmanae-0.0790.0006050.00104
speciesMegamonas_unclassified0.0790.0006240.00107
speciesBacteroides_uniformis-0.0790.0006410.00109
speciesBilophila_wadsworthia0.0780.0007340.00125
familyAcidaminococcaceae-0.0780.000740.00125
speciesRuminococcus_bromii-0.0780.0007660.00129
speciesVeillonella_parvula0.0770.0008170.00137
genusCollinsella-0.0770.0008330.00139
speciesCoprobacillus_sp_29_10.0770.0008940.00149
genusBurkholderiales_noname-0.0770.00090.00149
speciesBurkholderiales_bacterium_1_1_47-0.0770.00090.00149
familyBurkholderiales_noname-0.0760.0009690.0016
familyLactobacillaceae0.0750.001240.00204
genusAggregatibacter0.0740.001370.00225
speciesEnterobacter_aerogenes0.0740.001440.00235
classEpsilonproteobacteria0.0720.001790.0029
orderCampylobacterales0.0720.001790.0029
genusLambdalikevirus0.0720.001810.00293
speciesAggregatibacter_segnis0.0720.001850.00298
speciesLactobacillus_crispatus0.0720.001910.00306
speciesCollinsella_tanakaei0.0720.001910.00306
genusLactococcus0.0710.002010.00319
speciesLactobacillus_vaginalis0.0710.002010.00319
genusLactobacillus0.0710.002160.00342
orderClostridiales-0.0710.002270.00358
classClostridia-0.0710.002280.00359
familyPorphyromonadaceae-0.070.00250.00392
speciesBacteroides_caccae-0.070.002640.00413
speciesEnterobacteria_phage_HK5440.0690.00270.00421
speciesLactobacillus_mucosae0.0690.002880.00447
speciesLachnospiraceae_bacterium_5_1_63FAA0.0680.003120.00483
speciesBacteroides_finegoldii-0.0670.003570.00551
speciesLactococcus_phage_936_sensu_lato-0.0670.00390.006
genusBilophila0.0660.004130.00633
speciesLactobacillus_oris0.0650.005020.00767
speciesLactobacillus_delbrueckii0.0650.005090.00775
speciesBilophila_unclassified0.0640.005880.00891
speciesDialister_succinatiphilus-0.0640.005890.00891
speciesDesulfovibrio_desulfuricans-0.0630.006310.00952
speciesStreptococcus_phage_Sfi210.0630.006550.00985
speciesAlistipes_sp_HGB5-0.0630.006660.00998
speciesLactobacillus_amylovorus0.0620.006910.0103
speciesPeptostreptococcus_anaerobius0.0620.007580.0113
speciesBifidobacterium_pseudocatenulatum0.060.008920.0132
speciesLactococcus_lactis0.060.009080.0134
orderPseudomonadales0.0590.01060.0156
speciesLactobacillus_plantarum0.0590.01080.0159
speciesMegamonas_rupellensis0.0590.01110.0163
speciesLactobacillus_casei_paracasei0.0580.0120.0175
speciesDorea_formicigenerans-0.0580.01270.0185
speciesBifidobacterium_longum0.0570.01410.0205
speciesHaemophilus_paraphrohaemolyticus0.0560.01470.0213
speciesPrevotella_bivia0.0560.0150.0217
genusVeillonella0.0560.01510.0217
genusAnaerotruncus-0.0560.01570.0225
speciesRoseburia_intestinalis-0.0550.01660.0237
speciesVeillonella_dispar0.0550.01750.025
speciesParabacteroides_sp_D13-0.0550.01760.025
speciesPeptostreptococcaceae_noname_unclassified-0.0540.01890.0268
speciesBacteroides_plebeius-0.0540.01950.0276
speciesBacteroides_faecis-0.0540.01990.028
speciesLeuconostoc_lactis0.0530.02150.0301
speciesEggerthella_sp_1_3_56FAA0.0530.02150.0301
speciesBacteroides_intestinalis-0.0530.0230.0321
genusC2likevirus-0.0520.02340.0326
speciesC2likevirus_unclassified-0.0520.02520.035
orderBifidobacteriales0.0520.02590.0356
familyBifidobacteriaceae0.0520.02590.0356
speciesCollinsella_unclassified0.0520.02590.0356
speciesBacteroides_dorei-0.0510.02620.0359
speciesBacteroides_thetaiotaomicron0.0510.02640.0361
speciesRuminococcus_obeum-0.050.03110.0424
genusAdlercreutzia-0.050.03180.0431
speciesAdlercreutzia_equolifaciens-0.050.03180.0431
speciesBacteroides_barnesiae-0.0490.03380.0457
speciesBifidobacterium_catenulatum-0.0480.03610.0487
speciesPrevotella_stercorea-0.0480.03730.0502
speciesLachnospiraceae_bacterium_1_1_57FAA0.0480.03910.0524
genusRuminococcus-0.0480.03990.0534
genusBifidobacterium0.0470.04020.0536
speciesBacteroides_eggerthii-0.0450.05160.0686
speciesDialister_invisus0.0440.05520.0732
speciesVeillonella_atypica0.0440.05970.0789
speciesHoldemania_unclassified-0.0410.07550.0995
familyStaphylococcaceae0.0410.07870.103
speciesPorphyromonas_uenonis0.0410.07930.104
speciesAlistipes_unclassified0.040.08690.114
familyVeillonellaceae0.0390.09540.124
genusTuricibacter-0.0380.1030.134
speciesBifidobacterium_breve0.0360.1160.15
speciesTuricibacter_unclassified-0.0360.1170.151
speciesLactococcus_phage_bIL67-0.0360.1180.152
speciesEubacterium_hallii-0.0360.1180.152
familySuccinivibrionaceae-0.0360.120.154
genusPropionibacterium0.0360.1240.159
genusSuccinatimonas-0.0350.1260.16
speciesSuccinatimonas_hippei-0.0350.1260.16
familyViruses_noname0.0350.1270.161
genusViruses_noname0.0350.1270.161
speciesLactobacillus_rhamnosus0.0350.1290.163
speciesBacteroides_nordii-0.0350.1320.166
speciesOscillibacter_sp_KLE_17450.0340.1440.181
genusAcidaminococcus0.0340.1470.184
speciesBacteroides_stercoris0.0340.1470.184
genusMyoviridae_noname0.0330.1520.189
speciesLactococcus_phage_phi7-0.0330.1530.19
genusDorea-0.0330.1580.196
speciesDorea_unclassified0.0320.1620.2
speciesMegamonas_hypermegale0.0310.1820.224
speciesStreptococcus_thermophilus0.0310.1820.224
speciesBacteroides_coprocola-0.030.1910.234
speciesLactobacillus_acidophilus-0.030.1950.238
speciesRuminococcus_sp_5_1_39BFAA0.0290.2130.26
speciesBacteroides_sp_4_3_47FAA-0.0290.2140.26
speciesLactobacillus_reuteri0.0290.2180.265
speciesBacteroides_salanitronis-0.0280.220.266
genusStaphylococcus0.0280.2270.274
genusRuminococcaceae_noname0.0280.230.276
speciesRuminococcaceae_bacterium_D160.0280.230.276
speciesTuricibacter_sanguinis-0.0280.2310.276
speciesAcidaminococcus_unclassified0.0280.2310.276
speciesOdoribacter_unclassified0.0270.2370.282
genusSlackia0.0270.240.285
speciesBacteroides_oleiciplenus0.0270.2420.287
speciesParabacteroides_goldsteinii-0.0260.2590.306
classDeltaproteobacteria0.0260.2650.311
orderDesulfovibrionales0.0260.2650.311
familyDesulfovibrionaceae0.0260.2650.311
speciesMegasphaera_unclassified0.0260.2670.313
speciesBacteroides_xylanisolvens-0.0250.2770.324
speciesPropionibacterium_freudenreichii0.0250.2830.33
speciesSutterella_parvirubra0.0230.3130.364
genusSutterellaceae_unclassified-0.0230.3150.365
phylumFirmicutes-0.0230.3210.371
speciesClostridium_leptum-0.0220.3320.383
speciesAcidaminococcus_fermentans-0.0220.3390.39
speciesMegamonas_funiformis-0.0220.3470.399
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0210.3590.411
speciesVeillonella_unclassified0.0210.3730.426
speciesMegasphaera_elsdenii-0.0210.3740.426
speciesBacteroides_sp_2_1_22-0.020.3910.445
speciesBacteroides_sp_1_1_6-0.0190.4010.455
speciesBacteroides_clarus0.0190.4070.461
speciesParabacteroides_distasonis-0.0190.4140.467
speciesBacteroides_salyersiae-0.0190.4190.471
genusActinobacillus0.0190.420.471
speciesActinobacillus_unclassified0.0190.420.471
speciesOscillibacter_sp_KLE_1728-0.0180.4260.476
genusSiphoviridae_noname0.0180.4430.494
genusPseudoflavonifractor0.0180.4460.495
speciesPseudoflavonifractor_capillosus0.0180.4460.495
speciesBacteroides_ovatus0.0150.5170.573
speciesLactococcus_phage_P680-0.0150.5190.574
speciesHaemophilus_sputorum0.0150.5210.575
speciesAcidaminococcus_intestini0.0150.5240.577
speciesBifidobacterium_animalis0.0140.5480.602
speciesBifidobacterium_bifidum-0.0130.5710.625
speciesParabacteroides_johnsonii-0.0130.5720.625
speciesBacteroides_sp_3_1_190.0120.5930.646
familySiphoviridae-0.0120.5940.646
familyOscillospiraceae0.0120.6180.669
genusOscillibacter0.0120.6180.669
orderAeromonadales0.0110.6210.671
speciesOscillibacter_unclassified0.0110.6250.674
speciesParabacteroides_sp_20_3-0.0110.6330.681
speciesLactobacillus_sanfranciscensis0.010.6570.705
orderViruses_noname0.010.6710.718
phylumSynergistetes0.010.6790.719
classSynergistia0.010.6790.719
orderSynergistales0.010.6790.719
familySynergistaceae0.010.6790.719
speciesLactococcus_phage_jm2-0.010.6790.719
speciesKlebsiella_phage_KP36-0.0090.6910.73
genusPyramidobacter0.0090.7040.74
speciesPyramidobacter_piscolens0.0090.7040.74
orderCaudovirales0.0090.7060.741
familyPropionibacteriaceae0.0080.7170.749
speciesBacteroides_massiliensis-0.0080.7170.749
familyPodoviridae-0.0080.7450.776
genusPorphyromonas0.0080.7460.776
speciesPorphyromonas_asaccharolytica0.0070.7510.779
classNegativicutes-0.0070.7680.793
orderSelenomonadales-0.0070.7680.793
genusAcidaminococcaceae_unclassified0.0060.7820.804
genusParabacteroides-0.0060.7830.804
phylumViruses_noname0.0060.7850.804
classViruses_noname0.0060.7850.804
genusDialister0.0060.7980.815
speciesRuminococcus_sp_JC3040.0060.80.816
speciesRoseburia_unclassified-0.0050.8220.836
speciesBacteroides_vulgatus-0.0050.8260.838
speciesAnaerostipes_hadrus-0.0030.8850.896
speciesBacteroides_fluxus-0.0030.9110.921
speciesOdoribacter_laneus-0.0020.9140.922
speciesSlackia_piriformis0.0020.9430.949
speciesEubacterium_cylindroides-0.0020.9460.95
genusTunalikevirus0.0010.9690.971
speciesAlistipes_sp_AP110.00.9880.988
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01144851790040.003118787377529.87799301559e-0916115.41167
Crohns diseaseSpain17660.03130665391260.005395573379882.76330873863e-0511953.9734
Type II diabetesChina1831850.01143870169390.007398703525090.0544144829931722623.8805
Rheumatoid arthritisChina127980.007835883197220.008474031499150.0748174495727424814.1661
Colorectal cancerAustria64350.01645124131260.01403333648570.21204174786929631.4522
ObesityDenmark1691230.002523213720750.001741315476560.3002846394651413346.4733
Type II diabetesSweden53920.004080209140260.00396338337050.4706768933651545352.3298
Type II diabetesDenmark752770.002377608865580.002073351819880.7352553485362542583.3415
Ulcerative colitisSpain78660.006175821634390.005395573379880.9259171481142867894.6032
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382