MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-03 02:36:34 PST
Job id & description: 2156, M20D
Query type: protein
Count queries & homologs: 1, 82
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
WP_122202215.1893136CompleteK13049COG0624unknownunknown100.0100.0100.0
WP_122202215.1882356CompleteK13049COG0624unknownunknown100.0100.091.21
WP_122202215.1869137CompleteK13049COG0624BacteroidetesBacteroides95.8795.5382.69
WP_122202215.1871694CompleteK13049COG0624Bacteroidetesunknown95.8795.5383.1
WP_122202215.1873048CompleteK13049COG0624unknownunknown99.899.4270.18
WP_122202215.1906207CompleteK13049COG0624BacteroidetesAlistipes98.2395.0655.89
WP_122202215.1976717CompleteK13049COG0624unknownunknown99.2198.1734.31
WP_122202215.1883758Lack 5'-endK13049COG0624unknownunknown90.5786.1134.99
WP_122202215.1904340CompleteK13049COG0624unknownunknown98.8294.8733.33
WP_122202215.1874409CompleteK13049COG0624unknownunknown90.7785.9634.84
WP_122202215.1983588CompleteK13049COG0624unknownunknown99.2198.3733.46
WP_122202215.1916664CompleteK13049COG0624unknownunknown99.2195.6333.27
WP_122202215.1985070CompleteK13049COG0624unknownunknown99.2198.3733.66
WP_122202215.1953401CompleteK13049COG0624unknownunknown90.9689.3135.84
WP_122202215.1983688CompleteK13049COG0624unknownunknown99.2198.3733.66
WP_122202215.1958778CompleteK13049COG0624unknownunknown90.7789.0933.98
WP_122202215.1995292CompleteK13049COG0624unknownunknown90.9690.5733.76
WP_122202215.1991690CompleteK13049COG0624unknownunknown91.3690.834.9
WP_122202215.1978737CompleteK13049COG0624unknownunknown90.9690.0233.69
WP_122202215.1990960CompleteK13049COG0624unknownunknown90.7790.1833.84
WP_122202215.1944610CompleteK13049COG0624unknownunknown90.7788.5533.98
WP_122202215.1998725CompleteK13049COG0624unknownunknown90.7790.5533.19
WP_122202215.1993312CompleteK13049COG0624unknownunknown99.6198.9832.36
WP_122202215.1981267CompleteK13049COG0624unknownunknown98.0495.5234.13
WP_122202215.11052674CompleteK13049COG0624unknownunknown96.2796.2332.59
WP_122202215.11027398CompleteK13049COG0624unknownunknown97.4597.332.33
WP_122202215.11272051Lack both endsK13049COG0624unknownunknown87.4395.0733.33
WP_122202215.1979228CompleteK13049COG0624unknownunknown99.0298.5732.61
WP_122202215.1988469CompleteK13049COG0624unknownunknown90.7790.1832.76
WP_122202215.11000867CompleteK13049COG0624unknownunknown90.9690.7631.41
WP_122202215.11026269CompleteK13049COG0624unknownunknown99.4199.3832.22
WP_122202215.1988873CompleteK13049COG0624unknownunknown96.8696.3230.75
WP_122202215.11102252Lack 5'-endK13049COG0624unknownunknown97.6499.7931.86
WP_122202215.11166437CompleteK13049COG0624unknownunknown89.7894.9932.4
WP_122202215.11099945CompleteK13049COG0624unknownunknown96.8698.9332.33
WP_122202215.11049182CompleteK13049COG0624unknownunknown90.7790.7933.98
WP_122202215.11051769CompleteK13049COG0624unknownunknown98.8298.9530.97
WP_122202215.11045178CompleteK13049COG0624unknownunknown96.2796.2430.14
WP_122202215.11032824CompleteK13049COG0624unknownunknown95.6895.2232.11
WP_122202215.11032819CompleteK13049COG0624unknownunknown96.4696.0531.44
WP_122202215.11096338CompleteK13049COG0624unknownunknown96.8698.7232.8
WP_122202215.11080089Lack 5'-endK13049COG0624unknownunknown98.8299.3730.75
WP_122202215.11039872CompleteK13049COG0624unknownunknown98.2397.9230.34
WP_122202215.11101985CompleteK13049COG0624unknownunknown96.8698.9332.13
WP_122202215.11051411CompleteK13049COG0624unknownunknown94.8995.1932.72
WP_122202215.11100280CompleteK13049COG0624unknownunknown96.8698.9332.13
WP_122202215.1853151CompleteK13049COG0624unknownunknown94.388.0331.96
WP_122202215.11037874CompleteK13049COG0624unknownunknown98.4398.5431.95
WP_122202215.11053469CompleteK13049COG0624unknownunknown99.0299.5830.83
WP_122202215.11030488Lack 5'-endK13049COG0624unknownunknown91.1691.2932.41
WP_122202215.11100833CompleteK13049COG0624unknownunknown96.8698.9331.93
WP_122202215.11101465CompleteK13049COG0624unknownunknown96.8698.9331.4
WP_122202215.11001925CompleteK13049COG0624unknownunknown97.2595.8930.18
WP_122202215.11100097CompleteK13049COG0624unknownunknown96.8698.9331.53
WP_122202215.11051036CompleteK13049COG0624unknownunknown90.9690.3832.76
WP_122202215.11050303CompleteK13049COG0624unknownunknown91.5591.6331.69
WP_122202215.11216238CompleteK13049COG0624unknownunknown89.7896.0231.59
WP_122202215.11055528CompleteK13049COG0624unknownunknown90.7790.9930.89
WP_122202215.11008515CompleteK13049COG0624FirmicutesClostridium94.1192.831.26
WP_122202215.11049793CompleteK13049COG0624unknownunknown88.888.732.89
WP_122202215.11048577CompleteK13049COG0624unknownunknown91.5591.6331.48
WP_122202215.11041469Lack 5'-endK13049COG0624unknownunknown94.794.5830.43
WP_122202215.11057615CompleteK13049COG0624unknownunknown98.4398.7430.08
WP_122202215.1983919CompleteK13049COG0624unknownunknown91.3689.830.64
WP_122202215.11049517CompleteK13049COG0624unknownunknown94.794.9830.02
WP_122202215.11049476CompleteK13049COG0624unknownunknown88.888.731.57
WP_122202215.11052630CompleteK13049COG0624unknownunknown99.0299.3730.18
WP_122202215.11049837CompleteK13049COG0624unknownunknown90.7790.7930.02
WP_122202215.11046945CompleteK13049COG0624Firmicutesunknown88.888.132.75
WP_122202215.11050574CompleteK13049COG0624Firmicutesunknown89.7889.3331.09
WP_122202215.11047675CompleteK13049COG0624Firmicutesunknown88.888.132.53
WP_122202215.11473112Lack 3'-endK13049COG0624unknownunknown79.5790.2432.43
WP_122202215.11683998Lack 5'-endK13049COG0624unknownunknown79.5795.731.94
WP_122202215.11045424CompleteK13049COG0624Firmicutesunknown93.1292.931.11
WP_122202215.11022403CompleteK13049COG0624unknownunknown99.6199.1730.15
WP_122202215.11042919CompleteK13049COG0624Firmicutesunknown86.6486.2230.94
WP_122202215.11572741Lack both endsK13049COG0624unknownunknown81.5394.8533.49
WP_122202215.12220674Lack both endsK13049COG0624unknownunknown72.398.5533.06
WP_122202215.11264985CompleteK13049COG0624unknownunknown83.589.6930.3
WP_122202215.11037753Lack both endsK13049COG0624unknownunknown89.1988.1530.26
WP_122202215.11264795CompleteK13049COG0624unknownunknown83.589.6930.56
WP_122202215.11123202CompleteK13049COG0624unknownunknown88.4191.4230.37
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyRikenellaceae0.6231.65e-2013.89e-199
genusAlistipes0.6231.65e-2013.89e-199
speciesAlistipes_putredinis0.595.07e-1767.98e-174
genusSubdoligranulum0.4783e-1073.54e-105
speciesSubdoligranulum_unclassified0.4717.07e-1046.67e-102
speciesAlistipes_shahii0.4431.35e-901.06e-88
familyBacteroidales_noname0.4312.58e-851.35e-83
genusBacteroidales_noname0.4312.58e-851.35e-83
speciesBacteroidales_bacterium_ph80.4312.58e-851.35e-83
speciesClostridium_leptum0.4041.62e-747.65e-73
speciesAlistipes_finegoldii0.397.79e-693.34e-67
genusAnaerotruncus0.3884e-681.57e-66
genusOdoribacter0.3831.74e-666.32e-65
speciesOscillibacter_unclassified0.3745.41e-631.82e-61
speciesAlistipes_senegalensis0.3722.23e-627.02e-61
familyOscillospiraceae0.3671.21e-603.36e-59
genusOscillibacter0.3671.21e-603.36e-59
speciesOdoribacter_splanchnicus0.3581.5e-573.93e-56
speciesAlistipes_indistinctus0.3567.83e-571.95e-55
speciesRuminococcus_gnavus-0.3521.05e-552.48e-54
speciesAlistipes_onderdonkii0.3438.9e-532e-51
speciesAnaerotruncus_unclassified0.3344.23e-509.08e-49
genusBarnesiella0.3322.89e-495.68e-48
speciesBarnesiella_intestinihominis0.3322.89e-495.68e-48
speciesEubacterium_siraeum0.331.28e-482.42e-47
phylumVerrucomicrobia0.3231.56e-462.38e-45
classVerrucomicrobiae0.3231.56e-462.38e-45
orderVerrucomicrobiales0.3231.56e-462.38e-45
familyVerrucomicrobiaceae0.3231.56e-462.38e-45
genusAkkermansia0.3231.56e-462.38e-45
speciesAkkermansia_muciniphila0.3231.56e-462.38e-45
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.3213.25e-464.79e-45
genusVeillonella-0.326.57e-469.4e-45
familyFusobacteriaceae-0.3145.8e-448.05e-43
genusOxalobacter0.3136.68e-448.76e-43
speciesOxalobacter_formigenes0.3136.68e-448.76e-43
familyOxalobacteraceae0.3137.92e-441.01e-42
phylumFusobacteria-0.3138.98e-441.06e-42
classFusobacteriia-0.3138.98e-441.06e-42
orderFusobacteriales-0.3138.98e-441.06e-42
speciesLachnospiraceae_bacterium_7_1_58FAA0.3121.35e-431.55e-42
genusFusobacterium-0.3114.1e-434.61e-42
speciesAlistipes_sp_AP110.3012.26e-402.48e-39
genusAdlercreutzia0.32.68e-402.81e-39
speciesAdlercreutzia_equolifaciens0.32.68e-402.81e-39
speciesVeillonella_parvula-0.2995.46e-405.6e-39
classMethanobacteria0.2972.38e-392.29e-38
orderMethanobacteriales0.2972.38e-392.29e-38
familyMethanobacteriaceae0.2972.38e-392.29e-38
speciesVeillonella_unclassified-0.2972.51e-392.37e-38
genusMethanobrevibacter0.2956.27e-395.8e-38
genusHaemophilus-0.2892.76e-372.51e-36
speciesMethanobrevibacter_smithii0.2883.97e-373.54e-36
speciesHaemophilus_parainfluenzae-0.2877.35e-376.42e-36
orderPasteurellales-0.2871.08e-369.1e-36
familyPasteurellaceae-0.2871.08e-369.1e-36
phylumEuryarchaeota0.2844.42e-363.66e-35
speciesMegasphaera_micronuciformis-0.2831.01e-358.22e-35
genusDesulfovibrio0.2741.77e-331.42e-32
speciesVeillonella_atypica-0.271.66e-321.31e-31
classDeltaproteobacteria0.2684.42e-323.31e-31
orderDesulfovibrionales0.2684.42e-323.31e-31
familyDesulfovibrionaceae0.2684.42e-323.31e-31
familyPorphyromonadaceae0.2669.74e-327.18e-31
familyRuminococcaceae0.2661.06e-317.7e-31
speciesVeillonella_dispar-0.2651.56e-311.12e-30
genusHoldemania0.2634.69e-313.3e-30
speciesCoprobacillus_unclassified-0.2612.18e-301.51e-29
genusPseudoflavonifractor0.2581.01e-296.81e-29
speciesPseudoflavonifractor_capillosus0.2581.01e-296.81e-29
orderCoriobacteriales0.2521.57e-281.03e-27
familyCoriobacteriaceae0.2521.57e-281.03e-27
speciesCoprococcus_catus0.2521.62e-281.05e-27
speciesHoldemania_filiformis0.2497.78e-284.96e-27
speciesFusobacterium_ulcerans-0.2463.38e-272.13e-26
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.2454.83e-273e-26
genusCoprococcus0.2447.59e-274.65e-26
genusCollinsella0.2413.36e-262.03e-25
speciesRoseburia_hominis0.2413.61e-262.16e-25
speciesSubdoligranulum_sp_4_3_54A2FAA0.2373.11e-251.83e-24
genusGordonibacter0.2357.53e-254.33e-24
speciesGordonibacter_pamelaeae0.2357.53e-254.33e-24
speciesMethanobrevibacter_unclassified0.2349.16e-255.21e-24
speciesCollinsella_aerofaciens0.2314.7e-242.64e-23
speciesLachnospiraceae_bacterium_3_1_46FAA0.237.84e-244.35e-23
speciesRuminococcus_callidus0.2264.43e-232.43e-22
speciesParabacteroides_merdae0.2222.37e-221.29e-21
speciesClostridium_ramosum-0.2214.55e-222.44e-21
speciesAnaerotruncus_colihominis0.225.3e-222.81e-21
speciesClostridium_nexile-0.2181.37e-217.18e-21
genusCoprobacter0.2171.96e-211.01e-20
speciesCoprobacter_fastidiosus0.2171.96e-211.01e-20
genusBilophila0.2172.66e-211.35e-20
speciesBilophila_unclassified0.2147.52e-213.78e-20
speciesRuminococcus_obeum0.2121.76e-208.74e-20
speciesEubacterium_ventriosum0.2112.8e-201.38e-19
speciesStreptococcus_mitis_oralis_pneumoniae-0.213.85e-201.87e-19
speciesDesulfovibrio_desulfuricans0.215.32e-202.56e-19
genusActinobacillus-0.2097.96e-203.76e-19
speciesActinobacillus_unclassified-0.2097.96e-203.76e-19
genusCoprobacillus-0.2088.81e-204.12e-19
speciesBilophila_wadsworthia0.2061.93e-198.93e-19
speciesRuminococcus_bromii0.2062.65e-191.21e-18
genusRuminococcus0.2036.96e-193.16e-18
speciesCoprococcus_comes0.2037.59e-193.41e-18
genusRuminococcaceae_noname0.22.36e-181.04e-17
speciesRuminococcaceae_bacterium_D160.22.36e-181.04e-17
speciesFusobacterium_varium-0.1993.13e-181.37e-17
speciesStreptococcus_salivarius-0.1986.05e-182.62e-17
speciesCampylobacter_concisus-0.1978.24e-183.54e-17
speciesLachnospiraceae_bacterium_6_1_63FAA-0.1979.67e-184.11e-17
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1942.31e-179.73e-17
speciesFusobacterium_mortiferum-0.1924.62e-171.93e-16
speciesPrevotella_buccae-0.1916.86e-172.84e-16
speciesBacteroides_cellulosilyticus0.1916.93e-172.84e-16
speciesDorea_longicatena0.1891.5e-166.1e-16
speciesBifidobacterium_adolescentis0.1873.35e-161.35e-15
classGammaproteobacteria-0.1873.39e-161.36e-15
genusStreptococcus-0.1841.1e-154.36e-15
genusAggregatibacter-0.1841.16e-154.56e-15
familyStreptococcaceae-0.1812.96e-151.15e-14
speciesPorphyromonas_asaccharolytica0.1795.96e-152.31e-14
speciesEubacterium_hallii0.1771.13e-144.34e-14
speciesEubacterium_ramulus0.1752.71e-141.03e-13
genusPorphyromonas0.1726.49e-142.45e-13
speciesAggregatibacter_segnis-0.171.17e-134.38e-13
speciesRuminococcus_lactaris0.1691.74e-136.47e-13
speciesOlsenella_unclassified0.1674.03e-131.49e-12
speciesBacteroides_caccae0.1631.49e-125.45e-12
speciesBacteroides_uniformis0.1631.55e-125.63e-12
genusButyricimonas0.1621.8e-126.44e-12
speciesButyricimonas_synergistica0.1621.8e-126.44e-12
speciesFusobacterium_nucleatum-0.1612.7e-129.58e-12
genusMegasphaera-0.1594.97e-121.75e-11
speciesHaemophilus_sputorum-0.1561.22e-114.27e-11
speciesLachnospiraceae_bacterium_1_1_57FAA0.1542.19e-117.6e-11
classClostridia0.1532.6e-118.89e-11
orderClostridiales0.1532.6e-118.89e-11
speciesHaemophilus_paraphrohaemolyticus-0.1532.86e-119.71e-11
classBacilli-0.1515.64e-111.9e-10
orderLactobacillales-0.156.77e-112.27e-10
speciesAnaerostipes_unclassified-0.157.43e-112.47e-10
genusKlebsiella-0.1499.01e-112.97e-10
familyVeillonellaceae-0.1499.37e-113.07e-10
speciesKlebsiella_pneumoniae-0.1499.9e-113.22e-10
familyBacillales_noname-0.1481.23e-103.95e-10
genusGemella-0.1481.23e-103.95e-10
speciesStreptococcus_parasanguinis-0.1471.58e-105.04e-10
speciesStreptococcus_sanguinis-0.1471.68e-105.32e-10
phylumProteobacteria-0.1462.08e-106.53e-10
genusDorea0.1462.09e-106.53e-10
speciesEubacterium_biforme0.1462.5e-107.76e-10
speciesDesulfovibrio_piger0.1452.78e-108.58e-10
genusOlsenella0.1452.89e-108.86e-10
speciesParabacteroides_goldsteinii0.1444.52e-101.38e-09
speciesLactobacillus_salivarius-0.1427.24e-102.19e-09
genusParabacteroides0.141.18e-093.55e-09
speciesErysipelotrichaceae_bacterium_21_30.1391.58e-094.72e-09
phylumActinobacteria0.1372.38e-097.02e-09
classActinobacteria0.1372.38e-097.02e-09
speciesBacteroides_nordii0.1372.48e-097.27e-09
speciesClostridium_perfringens-0.1372.51e-097.31e-09
speciesAlistipes_unclassified-0.1372.63e-097.62e-09
speciesHoldemania_unclassified0.1372.76e-097.94e-09
speciesPrevotella_stercorea-0.1363.72e-091.06e-08
speciesCoprococcus_sp_ART55_10.1354.32e-091.23e-08
genusPantoea-0.1338.14e-092.29e-08
speciesPantoea_unclassified-0.1338.14e-092.29e-08
orderBacillales-0.1338.57e-092.39e-08
speciesRuminococcus_champanellensis0.131.68e-084.66e-08
speciesBacteroides_finegoldii0.1292.11e-085.82e-08
speciesLachnospiraceae_bacterium_2_1_46FAA-0.1292.21e-086.06e-08
familyEubacteriaceae0.1273.43e-089.36e-08
genusEubacterium0.1273.45e-089.36e-08
genusMitsuokella0.1273.72e-081e-07
speciesClostridium_asparagiforme0.1273.85e-081.03e-07
speciesStreptococcus_vestibularis-0.1273.86e-081.03e-07
speciesClostridium_sp_L2_500.1264.19e-081.11e-07
genusButyrivibrio0.1264.41e-081.16e-07
speciesMitsuokella_unclassified0.1231.01e-072.65e-07
speciesErysipelotrichaceae_bacterium_6_1_450.1221.15e-073e-07
speciesEubacterium_rectale0.1211.46e-073.79e-07
speciesStreptococcus_gordonii-0.1211.6e-074.13e-07
speciesRothia_mucilaginosa-0.1192.32e-075.95e-07
speciesStreptococcus_australis-0.1192.38e-076.07e-07
speciesDorea_formicigenerans0.1192.58e-076.55e-07
speciesBacteroides_fragilis-0.1174.01e-071.01e-06
speciesRuminococcus_torques0.1147.91e-071.99e-06
speciesPorphyromonas_uenonis0.1148.12e-072.03e-06
speciesLactobacillus_mucosae-0.1121.34e-063.33e-06
speciesStreptococcus_lutetiensis-0.1111.67e-064.13e-06
speciesBacteroides_eggerthii0.1092.24e-065.51e-06
speciesCoprococcus_eutactus0.1092.54e-066.21e-06
speciesEubacterium_cylindroides0.1073.18e-067.65e-06
genusMorganella-0.1073.2e-067.65e-06
speciesMorganella_morganii-0.1073.2e-067.65e-06
orderEnterobacteriales-0.1073.21e-067.65e-06
familyEnterobacteriaceae-0.1073.21e-067.65e-06
speciesBacteroides_intestinalis0.1073.38e-068.02e-06
speciesBlautia_producta-0.1073.45e-068.14e-06
speciesMegamonas_unclassified-0.1073.49e-068.2e-06
classErysipelotrichia0.1073.88e-068.98e-06
orderErysipelotrichales0.1073.88e-068.98e-06
familyErysipelotrichaceae0.1073.88e-068.98e-06
genusMegamonas-0.1064.3e-069.9e-06
speciesParabacteroides_unclassified-0.1064.63e-061.06e-05
speciesClostridium_clostridioforme-0.1055.56e-061.27e-05
genusMethanosphaera0.1046.46e-061.46e-05
speciesMethanosphaera_stadtmanae0.1046.46e-061.46e-05
speciesClostridium_bolteae-0.1046.81e-061.53e-05
familyBacteroidaceae-0.11.54e-053.43e-05
genusBacteroides-0.11.54e-053.43e-05
speciesLactobacillus_fermentum-0.0982.04e-054.52e-05
speciesParaprevotella_clara0.0982.11e-054.65e-05
speciesParaprevotella_unclassified0.0982.35e-055.16e-05
classNegativicutes-0.0972.66e-055.79e-05
orderSelenomonadales-0.0972.66e-055.79e-05
speciesParaprevotella_xylaniphila0.0972.74e-055.93e-05
phylumSynergistetes0.0963.06e-056.5e-05
classSynergistia0.0963.06e-056.5e-05
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genusPyramidobacter0.0860.0002110.000403
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speciesCoprobacillus_sp_29_10.0820.0003810.000708
speciesEubacterium_limosum0.0820.0004180.000774
speciesBacteroides_salyersiae0.0810.0004880.0009
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speciesParabacteroides_johnsonii0.0790.0006710.00122
speciesOscillibacter_sp_KLE_17450.0790.0006720.00122
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speciesButyrivibrio_unclassified0.0690.002640.00448
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speciesParabacteroides_sp_20_30.0660.004090.00677
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speciesProteus_mirabilis-0.0650.004740.00777
speciesLactobacillus_oris-0.0650.004970.00812
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speciesBifidobacterium_longum0.0630.006550.0105
speciesLactobacillus_crispatus-0.0630.006640.0106
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speciesPeptostreptococcus_anaerobius0.0610.008230.0131
speciesEggerthella_unclassified-0.0610.008770.0139
speciesBacteroides_sp_4_3_47FAA0.060.009380.0148
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speciesMegamonas_rupellensis-0.0580.01240.019
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speciesErysipelotrichaceae_bacterium_3_1_53-0.0560.01460.0222
speciesLactococcus_phage_P6800.0560.01470.0222
speciesEnterobacter_cloacae-0.0560.01480.0223
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genusPrevotella-0.0560.01490.0223
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genusPeptostreptococcaceae_noname-0.0550.01710.0254
genusLactobacillus-0.0550.01770.0262
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speciesBacteroides_coprocola-0.0540.0190.0279
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speciesLactobacillus_gasseri-0.0530.02250.0326
speciesClostridium_citroniae0.0520.02350.0339
speciesWeissella_cibaria-0.0520.02420.0348
genusAcidaminococcaceae_unclassified0.0520.02450.0351
speciesBacteroides_massiliensis0.0510.02640.0378
speciesAcidaminococcus_unclassified0.0510.02850.0406
genusButyricicoccus-0.050.0290.0411
speciesButyricicoccus_pullicaecorum-0.050.0290.0411
familyActinomycetaceae-0.050.0310.0438
speciesWeissella_confusa-0.0490.03330.0469
speciesKlebsiella_oxytoca-0.0490.03490.049
genusWeissella-0.0490.03520.0493
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speciesMegamonas_hypermegale-0.0480.03920.0546
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speciesEnterococcus_faecalis-0.0460.04510.0624
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speciesParabacteroides_distasonis0.0460.0460.0633
orderActinomycetales-0.0460.04610.0633
speciesMegamonas_funiformis-0.0450.05240.0715
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0450.05240.0715
speciesTuricibacter_unclassified0.0440.05450.0741
orderCaudovirales0.0440.05640.0765
speciesClostridium_spiroforme0.0440.05960.0806
speciesPrevotella_copri-0.0430.0610.0823
phylumBacteroidetes-0.0430.06390.0854
classBacteroidia-0.0430.06390.0854
orderBacteroidales-0.0430.06390.0854
speciesBifidobacterium_bifidum0.0420.06890.0919
speciesStreptococcus_infantarius-0.0420.07190.0956
speciesBifidobacterium_animalis0.0420.07260.0963
speciesSutterella_parvirubra-0.0410.07320.0968
genusBlautia-0.0410.07630.101
genusTuricibacter0.040.08480.111
genusPhascolarctobacterium0.040.08570.112
speciesPhascolarctobacterium_succinatutens0.040.08570.112
speciesMitsuokella_multacida0.040.08630.113
genusSutterella0.0390.09150.119
speciesCitrobacter_freundii-0.0390.09150.119
genusSuccinatimonas0.0390.09480.122
speciesSuccinatimonas_hippei0.0390.09480.122
familySuccinivibrionaceae0.0390.09590.123
genusAnaerostipes-0.0380.09990.128
genusLactococcus0.0380.1020.13
speciesCollinsella_unclassified0.0380.1020.13
speciesParabacteroides_sp_D130.0370.1060.135
speciesGemella_morbillorum-0.0360.1160.147
phylumViruses_noname0.0360.120.151
classViruses_noname0.0360.120.151
speciesLactobacillus_rhamnosus-0.0360.120.151
speciesCollinsella_tanakaei0.0360.1230.154
speciesBifidobacterium_pseudocatenulatum-0.0350.130.163
speciesRoseburia_intestinalis-0.0350.1340.167
speciesDialister_invisus0.0340.1360.169
speciesLactococcus_lactis0.0340.1380.171
speciesErysipelotrichaceae_bacterium_2_2_44A0.0340.1420.176
speciesPrevotella_bivia0.0330.150.185
speciesBacteroides_thetaiotaomicron-0.0330.1550.191
familyEnterococcaceae-0.0330.1570.193
speciesOscillibacter_sp_KLE_17280.0330.1580.194
speciesSlackia_piriformis0.0330.1590.194
speciesBacteroides_sp_1_1_60.0320.1610.196
speciesEubacterium_sp_3_1_310.0320.1610.196
genusPeptoniphilus0.0320.1650.2
speciesPeptostreptococcaceae_noname_unclassified-0.0320.1670.202
speciesCoprobacillus_sp_D60.0320.170.205
genusClostridiales_noname-0.0320.1710.206
familyClostridiales_Family_XI_Incertae_Sedis0.0320.1720.207
genusParvimonas0.0310.1770.212
speciesParvimonas_unclassified0.0310.1790.214
genusClostridium-0.0310.1860.222
genusEnterococcus-0.0310.1870.222
familyClostridiaceae-0.0290.2050.243
orderViruses_noname-0.0290.2080.246
speciesBacteroides_sp_2_1_220.0280.2240.264
speciesAnaerostipes_hadrus0.0280.2310.272
speciesEggerthella_sp_1_3_56FAA-0.0280.2330.274
speciesKlebsiella_unclassified-0.0280.2340.274
speciesBacteroides_coprophilus0.0270.2460.287
speciesBacteroides_dorei0.0270.2520.294
speciesLactococcus_phage_bIL67-0.0260.2560.298
speciesBifidobacterium_catenulatum0.0260.2650.307
genusPropionibacterium0.0250.2720.315
genusSiphoviridae_noname0.0250.2840.328
speciesLactobacillus_sanfranciscensis0.0240.3060.352
speciesLeuconostoc_lactis-0.0240.3090.355
genusLambdalikevirus0.0230.3130.359
speciesMegasphaera_unclassified-0.0230.3150.36
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0230.3220.367
speciesLactobacillus_plantarum0.0230.3240.369
genusSutterellaceae_unclassified-0.020.3830.434
familyViruses_noname-0.020.3840.434
genusViruses_noname-0.020.3840.434
speciesBacteroides_ovatus-0.020.3930.443
speciesBifidobacterium_angulatum0.0190.410.461
speciesKlebsiella_phage_KP360.0180.4250.476
speciesLactococcus_phage_936_sensu_lato-0.0180.4350.487
speciesBacteroides_oleiciplenus-0.0180.4440.495
familyPodoviridae0.0180.4480.499
speciesClostridium_hathewayi0.0180.4490.499
speciesLactococcus_phage_jm20.0170.4680.519
genusLeuconostoc0.0160.4760.526
speciesBacteroides_barnesiae-0.0160.4830.533
genusSlackia0.0150.5030.553
familyLeuconostocaceae-0.0150.5070.557
speciesBacteroides_salanitronis-0.0150.5210.571
speciesEnterobacteria_phage_HK544-0.0150.5260.575
speciesClostridium_sp_KLE_17550.0150.5310.578
speciesRuminococcus_sp_JC3040.0140.5320.578
familySutterellaceae-0.0140.5330.578
speciesClostridium_sp_ATCC_BAA_442-0.0140.5360.58
speciesLactobacillus_delbrueckii-0.0140.5590.604
speciesBacteroides_fluxus-0.0130.5670.61
genusFaecalibacterium0.0130.5690.61
speciesFaecalibacterium_prausnitzii0.0130.5690.61
speciesStreptococcus_phage_Sfi21-0.0130.5860.627
speciesOdoribacter_unclassified-0.0120.5960.636
speciesAcidaminococcus_intestini0.0120.5970.636
speciesLactococcus_phage_phi70.0120.6120.651
speciesBacteroides_stercoris0.0120.6170.654
speciesMegasphaera_elsdenii0.0110.6220.658
familyPropionibacteriaceae0.0110.6330.668
speciesHoldemania_sp_AP2-0.010.6620.697
speciesLactobacillus_casei_paracasei0.010.6680.702
speciesEscherichia_unclassified-0.0090.6820.715
orderPseudomonadales0.0090.7050.738
genusTunalikevirus0.0080.7290.761
orderAeromonadales-0.0080.7430.774
familyLachnospiraceae-0.0070.750.78
speciesEggerthella_lenta0.0070.7530.781
speciesTuricibacter_sanguinis0.0070.7670.794
classBetaproteobacteria-0.0070.7780.804
genusStaphylococcus0.0060.7940.818
genusFlavonifractor0.0060.8110.832
speciesFlavonifractor_plautii0.0060.8110.832
speciesBacteroides_sp_3_1_190.0050.8290.849
speciesClostridium_bartlettii-0.0040.8510.869
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0040.8620.879
speciesCollinsella_intestinalis0.0040.8650.88
speciesBacteroides_xylanisolvens0.0030.8940.907
speciesEnterococcus_faecium0.0030.9010.913
familyStaphylococcaceae0.0020.9180.928
orderBurkholderiales0.0020.9330.941
familyPrevotellaceae0.0010.9540.958
speciesLactobacillus_reuteri0.0010.9540.958
speciesLactococcus_garvieae0.0010.9610.963
speciesLactobacillus_acidophilus0.00.9950.995
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01992122116660.03794503721952.41692208709e-0629659.96003
Crohns diseaseSpain17660.01633701275010.04425856454631.3620173808e-058762.91272
Type II diabetesChina1831850.04094348648350.02863312468360.0126891794247406513.434
Type II diabetesDenmark752770.0512210140840.04261605734860.0528355462361737724.1813
Type II diabetesSweden53920.04531401939150.05329035157350.072514280114327929.45479
ObesityDenmark1691230.04471492343420.03920920271330.1833146664071043634.3165
Rheumatoid arthritisChina127980.05345863433780.04958217850650.3959283050821467648.9412
Colorectal cancerAustria64350.0397410447680.04286180104220.5218902096881875463.4524
Ulcerative colitisSpain78660.04650259706470.04425856454630.9128107996932843993.8147
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382