MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-03 03:13:04 PST
Job id & description: 2158, gadB (more specific)
Query type: protein
Count queries & homologs: 1, 124
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 90%, 90%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
HB321036542CompleteK01580COG0076BacteroidetesBacteroides100.0100.099.58
HB321049107CompleteK01580COG0076BacteroidetesBacteroides99.3899.7998.11
HB321036979CompleteK01580COG0076BacteroidetesBacteroides100.0100.094.38
HB32999737CompleteK01580COG0076BacteroidetesBacteroides100.098.5693.33
HB32917911Lack 5'-endK01580COG0076BacteroidetesBacteroides100.095.2493.33
HB321034341CompleteK01580COG0076BacteroidetesBacteroides100.099.7993.12
HB32903647Lack 5'-endK01580COG0076BacteroidetesBacteroides100.094.6792.29
HB32934653Lack 5'-endK01580COG0076BacteroidetesBacteroides100.096.092.29
HB321033042CompleteK01580COG0076BacteroidetesBacteroides98.7598.5493.88
HB32991221Lack 5'-endK01580COG0076BacteroidetesBacteroides98.7596.9393.88
HB321041009CompleteK01580COG0076BacteroidetesBacteroides100.0100.092.71
HB32917381Lack 5'-endK01580COG0076BacteroidetesBacteroides100.095.2492.5
HB321040707CompleteK01580COG0076Bacteroidetesunknown100.0100.092.08
HB321033054CompleteK01580COG0076BacteroidetesBacteroides99.1798.9692.65
HB321047906CompleteK01580COG0076BacteroidetesBacteroides98.7599.1693.25
HB321052672CompleteK01580COG0076BacteroidetesBacteroides98.1398.5493.84
HB321014506Lack 5'-endK01580COG0076BacteroidetesBacteroides98.1397.3193.84
HB321046790CompleteK01580COG0076BacteroidetesBacteroides99.79100.092.28
HB32936406Lack 5'-endK01580COG0076BacteroidetesBacteroides100.096.091.88
HB321035503CompleteK01580COG0076BacteroidetesBacteroides98.7598.5492.41
HB321052093CompleteK01580COG0076BacteroidetesBacteroides98.7599.1693.04
HB321052360CompleteK01580COG0076BacteroidetesBacteroides98.1398.5493.42
HB321003041Lack 5'-endK01580COG0076BacteroidetesBacteroides98.7597.3392.83
HB321053182CompleteK01580COG0076BacteroidetesBacteroides98.7599.1692.62
HB321052364CompleteK01580COG0076BacteroidetesBacteroides98.7599.1692.83
HB32927520Lack 5'-endK01580COG0076BacteroidetesBacteroides98.7594.4292.83
HB321102468Lack 5'-endK01580COG0076BacteroidetesBacteroides96.2598.5193.51
HB321031980CompleteK01580COG0076Bacteroidetesunknown99.7999.5887.68
HB321035210Lack 5'-endK01580COG0076BacteroidetesBacteroides99.7999.5888.52
HB321075604CompleteK01580COG0076Bacteroidetesunknown98.75100.088.61
HB321051093CompleteK01580COG0076Bacteroidetesunknown98.5498.9587.74
HB321075921CompleteK01580COG0076Bacteroidetesunknown98.75100.087.97
HB32976304CompleteK01580COG0076Bacteroidetesunknown99.7997.3687.27
HB321037668CompleteK01580COG0076Bacteroidetesunknown100.0100.085.42
HB321042017CompleteK01580COG0076BacteroidetesParabacteroides99.79100.086.64
HB321039010CompleteK01580COG0076Bacteroidetesunknown100.0100.085.42
HB321020248CompleteK01580COG0076Bacteroidetesunknown100.099.3885.83
HB32983408CompleteK01580COG0076BacteroidetesParabacteroides99.7997.7686.85
HB32996300Lack 5'-endK01580COG0076Bacteroidetesunknown99.7998.1685.8
HB321302442Lack both endsK01580COG0076BacteroidetesBacteroides91.88100.093.65
HB321052757CompleteK01580COG0076BacteroidetesParabacteroides99.1799.5886.97
HB321026047CompleteK01580COG0076BacteroidetesBacteroides100.0100.085.06
HB32818604CompleteK01580COG0076BacteroidetesParabacteroides100.091.0885.83
HB321026794CompleteK01580COG0076BacteroidetesBacteroides100.0100.084.85
HB321025458CompleteK01580COG0076BacteroidetesBacteroides100.0100.084.85
HB321047323CompleteK01580COG0076Bacteroidetesunknown99.79100.085.59
HB321018674Lack 5'-endK01580COG0076BacteroidetesBacteroides99.5898.7684.94
HB321043703CompleteK01580COG0076Bacteroidetesunknown99.79100.085.8
HB321040955CompleteK01580COG0076Bacteroidetesunknown100.0100.085.21
HB321029646CompleteK01580COG0076BacteroidetesBacteroides100.0100.084.65
HB321040372CompleteK01580COG0076Bacteroidetesunknown100.0100.083.96
HB321042408CompleteK01580COG0076Bacteroidetesunknown99.79100.085.39
HB32872687CompleteK01580COG0076Bacteroidetesunknown99.7993.1984.76
HB321036664CompleteK01580COG0076unknownunknown100.0100.082.08
HB321038468CompleteK01580COG0076unknownunknown100.0100.081.88
HB321049216CompleteK01580COG0076unknownunknown98.3398.7482.42
HB321061837Lack 3'-endK01580COG0076unknownunknown98.1398.7482.17
HB321050234CompleteK01580COG0076unknownunknown98.3398.7481.99
HB321052902CompleteK01580COG0076unknownunknown98.3398.7482.2
HB32962350CompleteK01580COG0076unknownunknown98.3395.3582.63
HB321049235CompleteK01580COG0076unknownunknown98.3398.7482.42
HB321047289CompleteK01580COG0076unknownunknown98.3398.5481.57
HB321075727CompleteK01580COG0076unknownunknown98.75100.078.06
HB32892465CompleteK01580COG0076unknownunknown100.094.380.0
HB321044577CompleteK01580COG0076unknownunknown98.3398.5478.39
HB321075728CompleteK01580COG0076unknownunknown98.75100.075.53
HB321075749CompleteK01580COG0076Bacteroidetesunknown97.598.7376.71
HB321092844CompleteK01580COG0076BacteroidetesAlistipes98.13100.077.07
HB321072583CompleteK01580COG0076unknownunknown98.75100.075.95
HB321074464Lack 5'-endK01580COG0076BacteroidetesAlistipes98.1399.3776.22
HB321093736CompleteK01580COG0076BacteroidetesAlistipes96.6798.7276.72
HB321089405CompleteK01580COG0076BacteroidetesAlistipes96.2598.0977.27
HB321007583CompleteK01580COG0076BacteroidetesAlistipes98.1396.9176.22
HB321088762CompleteK01580COG0076Bacteroidetesunknown96.4698.376.67
HB321030335Lack 3'-endK01580COG0076BacteroidetesAlistipes93.1392.5578.97
HB321088823CompleteK01580COG0076BacteroidetesAlistipes98.13100.075.58
HB321092000CompleteK01580COG0076Bacteroidetesunknown98.13100.073.89
HB321077835CompleteK01580COG0076Bacteroidetesunknown96.0497.4675.49
HB32824977CompleteK01580COG0076unknownunknown98.5490.170.19
HB321250647Lack 5'-endK01580COG0076unknownunknown93.33100.076.79
HB32879678CompleteK01580COG0076Bacteroidetesunknown97.7191.672.07
HB321088305CompleteK01580COG0076BacteroidetesAlistipes96.2598.0973.38
HB321097247CompleteK01580COG0076Bacteroidetesunknown97.7199.7971.43
HB321089374CompleteK01580COG0076Bacteroidetesunknown98.13100.072.4
HB321126953CompleteK01580COG0076unknownunknown95.8398.2856.96
HB321280237Lack 5'-endK01580COG0076unknownunknown92.599.3257.66
HB321131333CompleteK01580COG0076unknownunknown95.8398.2855.87
HB321119132CompleteK01580COG0076Bacteroidetesunknown96.2598.555.84
HB321105294Lack 5'-endK01580COG0076BacteroidetesOdoribacter97.2998.9354.39
HB321121614CompleteK01580COG0076unknownunknown95.6397.8555.34
HB321053352CompleteK01580COG0076ActinobacteriaBifidobacterium91.0490.7949.43
HB321169173CompleteK01580COG0076FusobacteriaFusobacterium90.8394.3448.62
HB321124580CompleteK01580COG0076unknownunknown90.091.8547.11
HB321125222CompleteK01580COG0076FirmicutesClostridium92.7195.2845.41
HB321112204CompleteK01580COG0076FirmicutesClostridium95.6396.5844.78
HB321138275CompleteK01580COG0076FirmicutesClostridium90.4293.3245.87
HB321122805CompleteK01580COG0076FirmicutesLactococcus90.2192.745.98
HB321111412CompleteK01580COG0076FirmicutesLactobacillus91.8894.0245.82
HB321034420CompleteK01580COG0076unknownunknown95.8394.5943.84
HB321034358CompleteK01580COG0076unknownunknown95.8394.5943.41
HB321034033CompleteK01580COG0076unknownunknown96.8896.4743.01
HB321108596Lack 5'-endK01580COG0076Verrucomicrobiaunknown92.594.2346.99
HB321034265CompleteK01580COG0076unknownunknown96.8896.4742.58
HB321125249CompleteK01580COG0076ProteobacteriaEscherichia95.2196.3545.12
HB321125269CompleteK01580COG0076FirmicutesEnterococcus95.2196.5743.57
HB321156328CompleteK01580COG0076unknownunknown90.6394.1445.68
HB321125248CompleteK01580COG0076ProteobacteriaEscherichia95.2196.3544.69
HB321016629CompleteK01580COG0076VerrucomicrobiaAkkermansia96.2593.843.87
HB321371283CompleteK01580COG0076unknownunknown90.6399.0746.8
HB32993070CompleteK01580COG0076ProteobacteriaEscherichia95.2191.8244.03
HB321014172CompleteK01580COG0076VerrucomicrobiaAkkermansia96.2593.843.87
HB32991665CompleteK01580COG0076Firmicutesunknown96.2593.8743.9
HB321125353CompleteK01580COG0076Proteobacteriaunknown95.2196.3544.25
HB321123698CompleteK01580COG0076ProteobacteriaProvidencia95.6397.043.07
HB321014647CompleteK01580COG0076VerrucomicrobiaAkkermansia96.2593.843.66
HB321136168CompleteK01580COG0076unknownunknown90.6393.7545.35
HB321068438Lack 5'-endK01580COG0076ProteobacteriaProteus95.6394.9543.51
HB32966199Lack 3'-endK01580COG0076ActinobacteriaEggerthella97.2993.3341.83
HB32957698CompleteK01580COG0076ActinobacteriaEggerthella97.2993.1541.83
HB321085997Lack 5'-endK01580COG0076ActinobacteriaEggerthella95.6396.1941.9
HB321144621CompleteK01580COG0076unknownunknown90.4293.0942.3
HB321143604CompleteK01580COG0076unknownunknown92.9296.3343.93
HB321176371CompleteK01580COG0076FirmicutesLactobacillus90.096.7241.48
HB32972809CompleteK01580COG0076ProteobacteriaEscherichia95.2196.5541.31
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBacteroidaceae0.8120.00.0
genusBacteroides0.8120.00.0
phylumFirmicutes-0.6421.57e-2172.47e-215
classBacteroidia0.6171.44e-1961.14e-194
orderBacteroidales0.6171.44e-1961.14e-194
phylumBacteroidetes0.6171.45e-1961.14e-194
classClostridia-0.5532.88e-1501.7e-148
orderClostridiales-0.5532.88e-1501.7e-148
genusDorea-0.5253.51e-1331.84e-131
genusParabacteroides0.522.97e-1301.4e-128
genusCoprococcus-0.5025.38e-1202.31e-118
speciesDorea_longicatena-0.4961.21e-1164.76e-115
familyRuminococcaceae-0.4791.15e-1074.18e-106
speciesRuminococcus_obeum-0.4763.25e-1061.1e-104
speciesCoprococcus_catus-0.4759.47e-1062.98e-104
speciesBacteroides_ovatus0.4735.71e-1051.68e-103
familyPorphyromonadaceae0.472.16e-1036e-102
speciesBacteroides_thetaiotaomicron0.4575.65e-971.48e-95
speciesCoprococcus_comes-0.4458.18e-922.03e-90
speciesDorea_formicigenerans-0.4437.33e-911.73e-89
familyLachnospiraceae-0.4332.07e-864.65e-85
speciesCollinsella_aerofaciens-0.4278.75e-841.88e-82
speciesEubacterium_hallii-0.4129.85e-782.02e-76
phylumActinobacteria-0.4121.26e-772.38e-76
classActinobacteria-0.4121.26e-772.38e-76
orderCoriobacteriales-0.4091.93e-763.37e-75
familyCoriobacteriaceae-0.4091.93e-763.37e-75
genusCollinsella-0.4022.06e-733.47e-72
speciesClostridium_bolteae0.3852.73e-674.44e-66
speciesBacteroides_uniformis0.3773.91e-646.15e-63
genusFlavonifractor0.3765.64e-648.32e-63
speciesFlavonifractor_plautii0.3765.64e-648.32e-63
speciesBifidobacterium_adolescentis-0.3742.58e-633.69e-62
speciesClostridiales_bacterium_1_7_47FAA0.376.53e-629.07e-61
speciesBacteroides_fragilis0.3632.45e-593.3e-58
speciesEubacterium_ramulus-0.3543e-563.93e-55
genusBifidobacterium-0.3543.21e-564.09e-55
orderBifidobacteriales-0.3536.11e-567.39e-55
familyBifidobacteriaceae-0.3536.11e-567.39e-55
speciesEubacterium_biforme-0.357.01e-558.27e-54
speciesBacteroides_vulgatus0.3491.27e-541.46e-53
speciesClostridium_symbiosum0.3467.98e-548.97e-53
familyEubacteriaceae-0.3445.73e-536.29e-52
genusEubacterium-0.3437.49e-538.03e-52
genusRuminococcus-0.3346.9e-507.24e-49
speciesAnaerostipes_hadrus-0.3338.59e-508.81e-49
orderLactobacillales-0.3261.23e-471.24e-46
classBacilli-0.3262.01e-471.98e-46
speciesOlsenella_unclassified-0.3245.27e-475.08e-46
speciesClostridium_citroniae0.3222.28e-462.15e-45
speciesClostridium_hathewayi0.3222.55e-462.36e-45
genusOlsenella-0.3213.31e-463e-45
speciesMethanobrevibacter_smithii-0.328.75e-467.79e-45
classMethanobacteria-0.3145.21e-444.39e-43
orderMethanobacteriales-0.3145.21e-444.39e-43
familyMethanobacteriaceae-0.3145.21e-444.39e-43
genusMethanobrevibacter-0.3113.02e-432.5e-42
speciesBacteroides_xylanisolvens0.315.23e-434.26e-42
speciesSubdoligranulum_unclassified-0.3066.86e-425.49e-41
familyPrevotellaceae-0.3042.49e-411.96e-40
speciesRuminococcus_sp_5_1_39BFAA-0.3042.99e-412.31e-40
phylumEuryarchaeota-0.3043.46e-412.63e-40
familyClostridiales_noname0.33.69e-402.76e-39
classErysipelotrichia-0.2996.55e-404.68e-39
orderErysipelotrichales-0.2996.55e-404.68e-39
familyErysipelotrichaceae-0.2996.55e-404.68e-39
genusSubdoligranulum-0.2989.71e-406.84e-39
familyStreptococcaceae-0.2941.7e-381.18e-37
speciesRuminococcus_gnavus0.2917.49e-385.12e-37
genusErysipelotrichaceae_noname-0.291.1e-377.42e-37
genusStreptococcus-0.2852.93e-361.95e-35
familyRikenellaceae0.2781.31e-348.47e-34
genusAlistipes0.2781.31e-348.47e-34
speciesStreptococcus_salivarius-0.2772.62e-341.67e-33
genusFaecalibacterium-0.2741.41e-338.76e-33
speciesFaecalibacterium_prausnitzii-0.2741.41e-338.76e-33
genusClostridiales_noname0.2724.38e-332.68e-32
speciesPrevotella_copri-0.2725.41e-333.27e-32
genusCatenibacterium-0.2692.21e-321.3e-31
speciesCatenibacterium_mitsuokai-0.2692.21e-321.3e-31
speciesEubacterium_rectale-0.2684.14e-322.41e-31
speciesClostridium_asparagiforme0.2652.09e-311.2e-30
speciesEubacterium_siraeum-0.2652.11e-311.2e-30
genusPeptostreptococcaceae_noname-0.2621.18e-306.63e-30
speciesBifidobacterium_longum-0.2612.06e-301.14e-29
speciesLachnospiraceae_bacterium_5_1_63FAA-0.262.84e-301.56e-29
familyPeptostreptococcaceae-0.2571.17e-296.35e-29
genusActinomyces-0.2571.75e-299.39e-29
genusButyrivibrio-0.2562.27e-291.2e-28
speciesClostridium_clostridioforme0.2562.52e-291.32e-28
familyActinomycetaceae-0.2562.87e-291.49e-28
speciesBacteroides_stercoris0.2497.18e-283.68e-27
orderActinomycetales-0.2481.2e-276.09e-27
genusPrevotella-0.2471.89e-279.49e-27
familyLactobacillaceae-0.2431.37e-266.81e-26
genusAnaerostipes-0.2431.52e-267.47e-26
speciesStreptococcus_parasanguinis-0.2431.66e-268.08e-26
familyOscillospiraceae0.2414.71e-262.25e-25
genusOscillibacter0.2414.71e-262.25e-25
genusAdlercreutzia-0.245.3e-262.48e-25
speciesAdlercreutzia_equolifaciens-0.245.3e-262.48e-25
genusLactobacillus-0.245.93e-262.74e-25
genusParaprevotella-0.2322.43e-241.11e-23
speciesCoprococcus_sp_ART55_1-0.2322.66e-241.21e-23
speciesParaprevotella_unclassified-0.2322.73e-241.23e-23
speciesStreptococcus_thermophilus-0.2291.09e-234.85e-23
genusMitsuokella-0.2272.68e-231.18e-22
speciesMitsuokella_unclassified-0.2264.8e-232.1e-22
speciesBilophila_unclassified0.2265.15e-232.23e-22
genusBilophila0.2265.47e-232.35e-22
speciesFusobacterium_ulcerans0.2249.33e-233.97e-22
speciesPeptostreptococcaceae_noname_unclassified-0.2241.24e-225.22e-22
genusPhascolarctobacterium-0.2241.26e-225.22e-22
speciesPhascolarctobacterium_succinatutens-0.2241.26e-225.22e-22
speciesStreptococcus_sanguinis-0.2222.21e-229.07e-22
speciesAnaerotruncus_colihominis0.225.55e-222.26e-21
speciesOscillibacter_unclassified0.2156.1e-212.46e-20
speciesBacteroides_nordii0.2131.09e-204.36e-20
phylumFusobacteria0.2131.55e-206.05e-20
classFusobacteriia0.2131.55e-206.05e-20
orderFusobacteriales0.2131.55e-206.05e-20
speciesRuminococcus_bromii-0.2113.11e-201.2e-19
familyFusobacteriaceae0.214.68e-201.8e-19
speciesButyrivibrio_crossotus-0.2095.76e-202.19e-19
speciesParabacteroides_distasonis0.2097.59e-202.87e-19
phylumProteobacteria0.2088.22e-203.05e-19
speciesAnaerostipes_unclassified0.2088.22e-203.05e-19
speciesParaprevotella_clara-0.2062.1e-197.74e-19
speciesParabacteroides_unclassified0.2053.69e-191.35e-18
genusFusobacterium0.2044.28e-191.55e-18
speciesClostridium_nexile0.2029.42e-193.39e-18
speciesClostridium_sp_L2_50-0.2021.36e-184.86e-18
speciesRuminococcus_callidus-0.2011.51e-185.36e-18
speciesMethanobrevibacter_unclassified-0.1978.06e-182.84e-17
speciesBilophila_wadsworthia0.1951.49e-175.21e-17
speciesCoprobacillus_unclassified0.1951.89e-176.56e-17
genusCoprobacillus0.1891.41e-164.86e-16
speciesParaprevotella_xylaniphila-0.1891.76e-166.02e-16
classDeltaproteobacteria0.1882.19e-167.33e-16
orderDesulfovibrionales0.1882.19e-167.33e-16
familyDesulfovibrionaceae0.1882.19e-167.33e-16
genusMethanosphaera-0.1858.51e-162.81e-15
speciesMethanosphaera_stadtmanae-0.1858.51e-162.81e-15
speciesCoprococcus_eutactus-0.1849.84e-163.23e-15
speciesMitsuokella_multacida-0.1841.06e-153.45e-15
genusClostridiaceae_noname0.1841.15e-153.69e-15
speciesClostridiaceae_bacterium_JC1180.1841.15e-153.69e-15
speciesRuminococcus_torques-0.1831.47e-154.69e-15
familyClostridiaceae0.1821.84e-155.83e-15
speciesRoseburia_hominis-0.1813.47e-151.09e-14
genusClostridium0.184.71e-151.47e-14
speciesClostridium_bartlettii-0.184.84e-151.5e-14
orderBacillales-0.1789.11e-152.81e-14
familyMicrococcaceae-0.1789.32e-152.86e-14
speciesStreptococcus_vestibularis-0.1789.5e-152.89e-14
genusRothia-0.1781.04e-143.15e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1771.23e-143.7e-14
speciesFusobacterium_varium0.1752.13e-146.36e-14
speciesRothia_mucilaginosa-0.1752.32e-146.89e-14
familyBacillales_noname-0.1744.1e-141.2e-13
genusGemella-0.1744.1e-141.2e-13
speciesRuminococcus_lactaris-0.1726.21e-141.81e-13
genusBlautia-0.1727.81e-142.26e-13
speciesEubacterium_ventriosum-0.1718.48e-142.44e-13
speciesEggerthella_unclassified0.1719.78e-142.8e-13
speciesOdoribacter_splanchnicus0.171.43e-134.07e-13
speciesLactobacillus_ruminis-0.1692.04e-135.77e-13
speciesAnaerotruncus_unclassified-0.1674.19e-131.18e-12
classNegativicutes-0.1665.46e-131.52e-12
orderSelenomonadales-0.1665.46e-131.52e-12
speciesDialister_succinatiphilus-0.1657.47e-132.06e-12
genusTuricibacter-0.1648.8e-132.41e-12
genusSolobacterium-0.1648.99e-132.44e-12
speciesSolobacterium_moorei-0.1648.99e-132.44e-12
speciesClostridium_ramosum0.1649.36e-132.52e-12
speciesLachnospiraceae_bacterium_6_1_63FAA0.1641.06e-122.84e-12
speciesEubacterium_sp_3_1_310.1631.39e-123.71e-12
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1621.86e-124.93e-12
speciesClostridium_sp_ATCC_BAA_4420.1622.07e-125.46e-12
speciesBacteroides_dorei0.1612.55e-126.69e-12
speciesTuricibacter_sanguinis-0.1612.62e-126.83e-12
speciesEubacterium_eligens-0.163.88e-121.01e-11
speciesBifidobacterium_animalis-0.1594.19e-121.08e-11
speciesBacteroides_cellulosilyticus0.1585.96e-121.53e-11
speciesBacteroides_caccae0.1586.67e-121.7e-11
genusOdoribacter0.1586.92e-121.76e-11
genusEggerthella0.1561.26e-113.18e-11
speciesStreptococcus_mutans-0.1551.47e-113.69e-11
speciesStreptococcus_gordonii-0.1551.65e-114.12e-11
speciesBifidobacterium_catenulatum-0.1542.02e-115.02e-11
familyAcidaminococcaceae-0.1542.25e-115.56e-11
speciesStreptococcus_australis-0.1542.33e-115.73e-11
speciesPropionibacterium_freudenreichii-0.1533.06e-117.48e-11
genusLactococcus-0.1523.46e-118.42e-11
speciesEscherichia_coli0.1514.93e-111.19e-10
genusBurkholderiales_noname0.1481.42e-103.4e-10
speciesBurkholderiales_bacterium_1_1_470.1481.42e-103.4e-10
familyBurkholderiales_noname0.1471.49e-103.55e-10
speciesTuricibacter_unclassified-0.1471.65e-103.91e-10
speciesStreptococcus_anginosus-0.1462.22e-105.24e-10
speciesLachnospiraceae_bacterium_5_1_57FAA0.1452.61e-106.13e-10
genusLeuconostoc-0.1443.48e-108.13e-10
speciesBacteroides_plebeius-0.1444.51e-101.05e-09
speciesAlistipes_senegalensis-0.1418.03e-101.86e-09
speciesRuminococcus_champanellensis-0.1418.28e-101.91e-09
speciesAlistipes_putredinis0.1419.9e-102.27e-09
genusPantoea0.141.12e-092.54e-09
speciesPantoea_unclassified0.141.12e-092.54e-09
speciesLactobacillus_rhamnosus-0.141.17e-092.64e-09
genusEscherichia0.1381.91e-094.29e-09
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1381.96e-094.38e-09
speciesBacteroides_pectinophilus-0.1382.31e-095.14e-09
speciesAlistipes_onderdonkii0.1372.93e-096.49e-09
speciesOscillibacter_sp_KLE_17450.1363.13e-096.9e-09
speciesOscillibacter_sp_KLE_17280.1363.31e-097.27e-09
genusLachnospiraceae_noname-0.1363.58e-097.82e-09
classBetaproteobacteria0.1355.06e-091.1e-08
orderBurkholderiales0.1346.33e-091.37e-08
speciesDesulfovibrio_piger-0.1338e-091.72e-08
genusPropionibacterium-0.131.65e-083.54e-08
speciesLachnospiraceae_bacterium_1_4_56FAA0.131.83e-083.91e-08
genusParasutterella0.131.86e-083.94e-08
speciesParasutterella_excrementihominis0.131.86e-083.94e-08
speciesBacteroides_oleiciplenus0.1292.2e-084.64e-08
speciesBifidobacterium_dentium-0.1273.81e-087.99e-08
speciesLactococcus_lactis-0.1264.47e-089.34e-08
familyLeuconostocaceae-0.1264.75e-089.88e-08
speciesBacteroides_intestinalis0.1255.54e-081.15e-07
speciesEubacterium_cylindroides-0.1247.92e-081.63e-07
speciesEubacterium_dolichum0.1248.28e-081.7e-07
speciesLactobacillus_casei_paracasei-0.1221.23e-072.51e-07
speciesLactococcus_phage_P680-0.1221.31e-072.67e-07
speciesDorea_unclassified0.1211.72e-073.48e-07
phylumViruses_noname-0.122e-074.02e-07
classViruses_noname-0.122e-074.02e-07
speciesButyrivibrio_unclassified-0.1182.99e-075.98e-07
speciesRoseburia_inulinivorans-0.1173.69e-077.35e-07
speciesFusobacterium_mortiferum0.1174.25e-078.43e-07
speciesBacteroides_sp_2_1_220.1164.6e-079.08e-07
speciesBifidobacterium_bifidum-0.1164.91e-079.66e-07
speciesStreptococcus_mitis_oralis_pneumoniae-0.1155.75e-071.13e-06
genusRoseburia-0.1156.56e-071.28e-06
speciesPrevotella_stercorea-0.1138.98e-071.74e-06
speciesLachnospiraceae_bacterium_2_1_58FAA0.1139.14e-071.77e-06
speciesParabacteroides_merdae0.1131e-061.93e-06
orderEnterobacteriales0.1121.17e-062.24e-06
familyEnterobacteriaceae0.1121.17e-062.24e-06
speciesBacteroides_coprocola-0.1121.22e-062.32e-06
speciesLactobacillus_delbrueckii-0.112.03e-063.85e-06
speciesRoseburia_intestinalis-0.1092.2e-064.15e-06
speciesBlautia_producta0.1092.53e-064.76e-06
speciesBacteroides_coprophilus-0.1082.64e-064.94e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1082.85e-065.32e-06
speciesSutterella_wadsworthensis-0.1064.4e-068.18e-06
genusBarnesiella-0.1055.38e-069.92e-06
speciesBarnesiella_intestinihominis-0.1055.38e-069.92e-06
phylumVerrucomicrobia-0.1038.49e-061.53e-05
classVerrucomicrobiae-0.1038.49e-061.53e-05
orderVerrucomicrobiales-0.1038.49e-061.53e-05
familyVerrucomicrobiaceae-0.1038.49e-061.53e-05
genusAkkermansia-0.1038.49e-061.53e-05
speciesAkkermansia_muciniphila-0.1038.49e-061.53e-05
speciesClostridium_leptum-0.1011.1e-051.97e-05
speciesHoldemania_sp_AP20.1011.14e-052.04e-05
speciesBacteroides_massiliensis0.1011.24e-052.21e-05
speciesRuminococcus_sp_JC304-0.1011.31e-052.32e-05
genusSiphoviridae_noname-0.11.44e-052.55e-05
speciesMegasphaera_elsdenii-0.0981.99e-053.5e-05
speciesCollinsella_intestinalis0.0962.98e-055.23e-05
classGammaproteobacteria0.0963.28e-055.73e-05
familySutterellaceae0.0963.31e-055.77e-05
genusButyricimonas0.0944.37e-057.56e-05
speciesButyricimonas_synergistica0.0944.37e-057.56e-05
familyVeillonellaceae-0.0935.29e-059.11e-05
speciesCollinsella_unclassified0.0936.12e-050.000105
genusPseudoflavonifractor-0.0936.14e-050.000105
speciesPseudoflavonifractor_capillosus-0.0936.14e-050.000105
familySiphoviridae-0.0926.43e-050.000109
speciesAlistipes_finegoldii0.099.92e-050.000168
speciesPrevotella_bivia0.099.98e-050.000168
genusSutterella-0.090.0001040.000175
orderViruses_noname-0.0890.0001110.000186
speciesBacteroides_salyersiae0.0890.0001180.000197
genusMorganella0.0860.0001840.000305
speciesMorganella_morganii0.0860.0001840.000305
genusGordonibacter-0.0840.0002960.000487
speciesGordonibacter_pamelaeae-0.0840.0002960.000487
speciesAlistipes_shahii0.0830.0003090.000506
genusOxalobacter-0.0820.0003650.000594
speciesOxalobacter_formigenes-0.0820.0003650.000594
speciesErysipelotrichaceae_bacterium_21_3-0.0820.0003660.000594
familyOxalobacteraceae-0.0810.0004210.000681
speciesOdoribacter_unclassified-0.0810.0004350.000701
orderCaudovirales-0.0810.0004510.000724
familyPropionibacteriaceae-0.080.0005530.000885
speciesLactobacillus_gasseri-0.080.0005560.000887
speciesWeissella_cibaria-0.0790.0006090.000968
speciesParvimonas_unclassified-0.0790.0006250.00099
genusParvimonas-0.0790.0006330.000999
speciesPrevotella_buccae0.0780.0006880.00108
familyEnterococcaceae-0.0780.00070.0011
genusPeptostreptococcus-0.0770.0008070.00125
genusEnterococcus-0.0770.0008070.00125
phylumSynergistetes0.0770.0008150.00125
classSynergistia0.0770.0008150.00125
orderSynergistales0.0770.0008150.00125
familySynergistaceae0.0770.0008150.00125
speciesLactococcus_phage_jm2-0.0760.0009660.00148
speciesEnterococcus_faecium-0.0750.001090.00166
speciesKlebsiella_pneumoniae0.0730.001510.0023
genusPyramidobacter0.0730.001560.00236
speciesPyramidobacter_piscolens0.0730.001560.00236
speciesStreptococcus_pasteurianus0.0730.001630.00246
genusDesulfovibrio-0.0720.001820.00274
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0720.001870.0028
speciesParabacteroides_goldsteinii0.0720.001880.00281
speciesLactobacillus_plantarum-0.0720.00190.00283
speciesMegasphaera_micronuciformis0.070.00230.00341
speciesSubdoligranulum_sp_4_3_54A2FAA0.070.002450.00363
speciesBacteroides_clarus0.070.002530.00373
genusHoldemania0.0690.002770.00407
speciesGemella_morbillorum-0.0680.003090.00453
speciesKlebsiella_unclassified0.0680.003220.00471
speciesPeptostreptococcus_stomatis-0.0680.00330.00481
genusKlebsiella0.0670.003920.00569
speciesEggerthella_sp_1_3_56FAA-0.0660.004510.00651
speciesMegamonas_funiformis-0.0660.004510.00651
speciesBacteroides_barnesiae-0.0650.004880.00702
speciesAlistipes_sp_AP110.0650.005080.00728
speciesLactococcus_garvieae-0.0650.005090.00728
speciesLactobacillus_sanfranciscensis-0.0640.005670.00809
speciesParabacteroides_johnsonii0.0630.006210.00883
orderPseudomonadales-0.0630.006270.00889
speciesLactococcus_phage_phi7-0.0630.00670.00947
genusCoprobacter-0.0620.007690.0108
speciesCoprobacter_fastidiosus-0.0620.007690.0108
speciesBacteroides_salanitronis-0.0610.008160.0114
speciesSutterella_parvirubra0.0590.01070.0149
speciesBifidobacterium_angulatum-0.0590.01090.0152
familyClostridiales_Family_XI_Incertae_Sedis-0.0580.01230.0171
genusRuminococcaceae_noname-0.0570.01310.0181
speciesRuminococcaceae_bacterium_D16-0.0570.01310.0181
familySuccinivibrionaceae-0.0560.0150.0206
speciesClostridium_sp_KLE_17550.0550.01670.0229
speciesAcidaminococcus_fermentans-0.0550.0180.0246
genusDialister-0.0550.01830.025
speciesSlackia_piriformis-0.0550.01840.025
genusSuccinatimonas-0.0540.0190.0257
speciesSuccinatimonas_hippei-0.0540.0190.0257
speciesLactobacillus_acidophilus-0.0540.02010.0271
speciesAlistipes_sp_HGB50.0540.02020.0272
speciesRoseburia_unclassified-0.0530.02080.0279
genusSlackia-0.0530.02180.0291
speciesErysipelotrichaceae_bacterium_3_1_530.0530.02230.0297
speciesLachnospiraceae_bacterium_7_1_58FAA0.0530.0230.0306
genusWeissella-0.0520.02580.0342
familyBacteroidales_noname-0.0510.02770.0364
genusBacteroidales_noname-0.0510.02770.0364
speciesBacteroidales_bacterium_ph8-0.0510.02770.0364
speciesEnterococcus_faecalis-0.0510.02880.0378
speciesEnterobacteria_phage_HK5440.050.03220.0421
speciesBacteroides_sp_1_1_60.0490.03310.043
speciesFusobacterium_nucleatum0.0490.03310.043
genusActinobacillus-0.0470.0410.053
speciesActinobacillus_unclassified-0.0470.0410.053
speciesParabacteroides_sp_D13-0.0470.04180.0539
genusStaphylococcus-0.0460.0460.0592
speciesWeissella_confusa-0.0460.04650.0596
speciesLactobacillus_reuteri-0.0460.04810.0615
speciesC2likevirus_unclassified-0.0450.05280.0674
speciesBacteroides_finegoldii0.0440.05660.0719
genusAnaerotruncus-0.0440.05670.0719
speciesLeuconostoc_lactis-0.0440.05820.0736
speciesLactobacillus_mucosae-0.0430.06040.0762
genusEnterobacter-0.0430.06060.0763
speciesEnterobacter_cloacae-0.0420.06820.0856
genusC2likevirus-0.0420.07070.0885
speciesCollinsella_tanakaei0.0410.07730.0965
speciesErysipelotrichaceae_bacterium_6_1_450.040.08180.102
genusProteus0.040.08390.104
speciesClostridium_spiroforme-0.040.08680.108
familyStaphylococcaceae-0.0380.09980.123
speciesProteus_mirabilis0.0370.1080.133
speciesLactobacillus_fermentum-0.0370.110.135
genusButyricicoccus0.0360.1240.152
speciesButyricicoccus_pullicaecorum0.0360.1240.152
speciesKlebsiella_oxytoca-0.0350.1270.155
orderAeromonadales-0.0340.1440.175
speciesBacteroides_sp_3_1_190.0340.1440.175
familyViruses_noname-0.0340.1450.175
genusViruses_noname-0.0340.1450.175
speciesErysipelotrichaceae_bacterium_2_2_44A0.0340.1460.176
speciesAggregatibacter_segnis-0.0330.1560.187
speciesPorphyromonas_uenonis0.0320.1660.199
genusPeptoniphilus0.0320.1690.202
speciesBacteroides_eggerthii-0.0310.1750.209
familyPodoviridae0.0310.1770.21
genusAggregatibacter-0.0310.1810.215
speciesBifidobacterium_breve-0.0310.1820.215
speciesHaemophilus_paraphrohaemolyticus-0.0310.1860.219
speciesMegamonas_hypermegale-0.030.1880.221
speciesLactobacillus_crispatus-0.030.190.223
speciesKlebsiella_sp_MS_92_30.030.1990.233
speciesVeillonella_unclassified-0.0280.2180.255
genusCampylobacter0.0280.2220.259
speciesBacteroides_sp_4_3_47FAA0.0270.2430.283
speciesHaemophilus_sputorum-0.0260.2670.309
speciesCoprobacillus_sp_29_10.0260.2670.309
familyCampylobacteraceae0.0250.2830.327
speciesVeillonella_dispar0.0250.2870.33
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0230.3140.361
speciesLactobacillus_vaginalis-0.0230.3220.369
speciesEscherichia_unclassified0.0230.3230.369
speciesBlautia_hydrogenotrophica-0.0220.3310.377
speciesClostridium_perfringens-0.0210.3540.403
speciesMegasphaera_unclassified-0.0210.3660.415
speciesDialister_invisus0.020.3890.44
orderPasteurellales-0.020.3990.449
familyPasteurellaceae-0.020.3990.449
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0190.40.45
speciesHaemophilus_parainfluenzae-0.0190.4020.451
genusMyoviridae_noname-0.0190.4040.452
speciesEnterobacter_aerogenes-0.0190.4060.453
genusHaemophilus-0.0190.4070.453
genusAcidaminococcaceae_unclassified0.0190.4120.458
genusSutterellaceae_unclassified-0.0190.4150.46
speciesEubacterium_limosum0.0190.420.464
speciesLactobacillus_oris-0.0180.4350.48
speciesLactococcus_phage_936_sensu_lato-0.0180.4390.483
classEpsilonproteobacteria0.0170.4710.516
orderCampylobacterales0.0170.4710.516
speciesStreptococcus_infantarius0.0160.4770.521
speciesPorphyromonas_asaccharolytica0.0150.5140.56
speciesParabacteroides_sp_20_3-0.0150.5160.561
speciesAlistipes_indistinctus0.0150.5190.563
speciesCoriobacteriaceae_bacterium_phI0.0130.560.606
speciesCoprobacillus_sp_D60.0130.5710.617
speciesMegamonas_rupellensis0.0130.5870.633
speciesBacteroides_faecis-0.0120.5890.633
genusVeillonella-0.0120.5910.634
speciesAcidaminococcus_unclassified0.0120.6010.643
speciesLactobacillus_amylovorus-0.0120.610.651
speciesOdoribacter_laneus-0.0120.6150.655
genusCoriobacteriaceae_noname0.0110.6220.661
familyMyoviridae-0.0110.6310.669
speciesVeillonella_atypica-0.010.6590.697
speciesAcidaminococcus_intestini0.010.6720.71
speciesEggerthella_lenta0.010.6810.717
genusAcidaminococcus-0.0090.7080.744
speciesAlistipes_unclassified-0.0080.7170.752
genusLambdalikevirus-0.0080.7310.765
genusTunalikevirus-0.0060.7880.823
speciesVeillonella_parvula0.0050.8170.851
genusCitrobacter0.0050.8220.855
speciesHoldemania_unclassified0.0050.8330.864
speciesDesulfovibrio_desulfuricans-0.0050.8370.866
speciesBifidobacterium_pseudocatenulatum0.0040.8790.908
speciesMegamonas_unclassified-0.0030.8950.922
speciesBacteroides_fluxus0.0030.9020.928
genusMegamonas-0.0030.9050.929
genusPorphyromonas0.0030.9110.933
genusMegasphaera0.0020.9210.94
speciesStreptococcus_lutetiensis-0.0020.9220.94
speciesCampylobacter_concisus0.0020.9280.944
speciesCitrobacter_unclassified0.0020.9350.949
speciesKlebsiella_phage_KP36-0.0020.9420.953
speciesLactobacillus_salivarius0.0020.9430.953
speciesCitrobacter_freundii-0.0010.950.958
speciesStreptococcus_phage_Sfi21-0.0010.9540.96
speciesPeptostreptococcus_anaerobius-0.0010.9580.962
speciesHoldemania_filiformis-0.0010.970.972
speciesLactococcus_phage_bIL670.00.9880.988
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.3673319830530.1750444426524.49970916781e-065431.80549
Type II diabetesChina1831850.3231746931750.2729391914830.00614639637906310110.2482
Colorectal cancerAustria64350.1359078634960.07784515243720.0796087864679419414.19
Rheumatoid arthritisChina127980.2015723626340.1771607065990.0949307316556510617.0274
ObesityDenmark1691230.183849583610.166379021840.119228985394811926.6976
Type II diabetesDenmark752770.1982792452390.175551765570.2256041421041372644.993
Liver cirrhosisChina1201140.3042896710970.2738705820820.2395928776342002067.2512
Ulcerative colitisSpain78660.1642302323510.1750444426520.4967018859711905162.8456
Type II diabetesSweden53920.1057343514750.1021745733030.8836898948692643889.5293
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382