MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-05 23:16:08 PST
Job id & description: 2164, PREP
Query type: protein
Count queries & homologs: 1, 104
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
Bac_prolyl378065CompleteK01322COG1505Bacteroidetesunknown100.0100.099.86
Bac_prolyl377056CompleteK01322COG1505Bacteroidetesunknown99.4399.2987.84
Bac_prolyl374760Lack 5'-endK01322COG1505BacteroidetesBacteroides100.099.5885.63
Bac_prolyl374724Lack 5'-endK01322COG1505BacteroidetesBacteroides100.099.5885.92
Bac_prolyl373321Lack 5'-endK01322COG1505BacteroidetesBacteroides100.099.4385.21
Bac_prolyl379228CompleteK01322COG1505BacteroidetesBacteroides99.5799.5785.14
Bac_prolyl378918CompleteK01322COG1505BacteroidetesBacteroides100.0100.084.21
Bac_prolyl377675CompleteK01322COG1505unknownunknown99.8699.7284.05
Bac_prolyl363896CompleteK01322COG1505BacteroidetesBacteroides100.098.681.79
Bac_prolyl376611Lack 3'-endK01322COG1505Bacteroidetesunknown99.4399.1581.83
Bac_prolyl378541CompleteK01322COG1505Bacteroidetesunknown100.0100.081.22
Bac_prolyl369595CompleteK01322COG1505BacteroidetesBacteroides100.099.5881.59
Bac_prolyl373122CompleteK01322COG1505BacteroidetesBacteroides99.7299.2981.05
Bac_prolyl368064CompleteK01322COG1505BacteroidetesBacteroides99.5799.1581.25
Bac_prolyl375622CompleteK01322COG1505unknownunknown99.1598.8779.91
Bac_prolyl375120CompleteK01322COG1505unknownunknown99.1598.8779.91
Bac_prolyl315727CompleteK01322COG1505unknownunknown99.2993.3376.29
Bac_prolyl372255CompleteK01322COG1505unknownunknown99.4399.2976.64
Bac_prolyl378335CompleteK01322COG1505unknownunknown99.5799.5775.29
Bac_prolyl372099CompleteK01322COG1505unknownunknown99.2999.0175.14
Bac_prolyl350352CompleteK01322COG1505unknownunknown99.2996.6873.82
Bac_prolyl379720CompleteK01322COG1505unknownunknown99.2999.4369.38
Bac_prolyl367787CompleteK01322COG1505BacteroidetesPrevotella99.5798.8767.05
Bac_prolyl387253CompleteK01322COG1505BacteroidetesBacteroides99.2998.7166.62
Bac_prolyl372477CompleteK01322COG1505unknownunknown99.5799.2962.68
Bac_prolyl379877CompleteK01322COG1505unknownunknown99.4399.7263.57
Bac_prolyl307802CompleteK01322COG1505unknownunknown99.4392.4662.71
Bac_prolyl405347CompleteK01322COG1505unknownunknown96.8799.4265.4
Bac_prolyl376718CompleteK01322COG1505unknownunknown99.4399.4362.29
Bac_prolyl379213CompleteK01322COG1505unknownunknown99.7299.8662.39
Bac_prolyl391194CompleteK01322COG1505unknownunknown97.8798.9964.49
Bac_prolyl376410CompleteK01322COG1505BacteroidetesPrevotella99.5799.8661.65
Bac_prolyl375503CompleteK01322COG1505unknownunknown99.4399.5760.26
Bac_prolyl297638CompleteK01322COG1505unknownunknown96.4489.0263.05
Bac_prolyl375144CompleteK01322COG1505unknownunknown99.4399.5760.11
Bac_prolyl390499CompleteK01322COG1505unknownunknown98.0199.2862.23
Bac_prolyl373990CompleteK01322COG1505unknownunknown98.7298.7360.55
Bac_prolyl373362CompleteK01322COG1505unknownunknown100.099.8660.23
Bac_prolyl369023CompleteK01322COG1505unknownunknown98.4497.7561.49
Bac_prolyl390482CompleteK01322COG1505unknownunknown98.5899.1460.52
Bac_prolyl352115CompleteK01322COG1505unknownunknown99.4397.559.46
Bac_prolyl352802CompleteK01322COG1505unknownunknown99.5797.7859.15
Bac_prolyl381335CompleteK01322COG1505unknownunknown99.7299.8659.17
Bac_prolyl377258CompleteK01322COG1505unknownunknown99.5799.8659.32
Bac_prolyl387559CompleteK01322COG1505unknownunknown97.8798.8561.42
Bac_prolyl371186CompleteK01322COG1505unknownunknown98.7298.4561.32
Bac_prolyl376502CompleteK01322COG1505unknownunknown99.5799.8658.04
Bac_prolyl447409Lack 3'-endK01322COG1505unknownunknown94.59100.061.41
Bac_prolyl369224CompleteK01322COG1505unknownunknown99.5799.0158.4
Bac_prolyl349555CompleteK01322COG1505unknownunknown96.4495.360.52
Bac_prolyl375640CompleteK01322COG1505unknownunknown98.7298.8759.23
Bac_prolyl365019CompleteK01322COG1505unknownunknown98.8697.6158.8
Bac_prolyl370525CompleteK01322COG1505unknownunknown97.5896.959.51
Bac_prolyl386469CompleteK01322COG1505unknownunknown97.5898.2860.64
Bac_prolyl322349CompleteK01322COG1505unknownunknown99.093.6858.29
Bac_prolyl369789CompleteK01322COG1505unknownunknown99.1598.4559.14
Bac_prolyl371291CompleteK01322COG1505unknownunknown99.2999.4457.53
Bac_prolyl372669CompleteK01322COG1505unknownunknown99.1598.7360.23
Bac_prolyl384140CompleteK01322COG1505unknownunknown99.2999.8656.08
Bac_prolyl366880CompleteK01322COG1505unknownunknown99.8699.5857.83
Bac_prolyl367634CompleteK01322COG1505unknownunknown99.5799.7257.83
Bac_prolyl369025CompleteK01322COG1505unknownunknown99.1599.357.45
Bac_prolyl361507CompleteK01322COG1505unknownunknown100.099.359.1
Bac_prolyl351730CompleteK01322COG1505unknownunknown98.5897.5157.39
Bac_prolyl382920CompleteK01322COG1505unknownunknown97.1697.8659.53
Bac_prolyl374693CompleteK01322COG1505unknownunknown98.5898.1658.91
Bac_prolyl455174Lack 5'-endK01322COG1505unknownunknown92.4699.2461.07
Bac_prolyl369598CompleteK01322COG1505unknownunknown99.2999.0156.55
Bac_prolyl359720CompleteK01322COG1505unknownunknown99.4399.4456.04
Bac_prolyl358033CompleteK01322COG1505unknownunknown99.1598.8854.16
Bac_prolyl339396CompleteK01322COG1505unknownunknown99.7295.7653.63
Bac_prolyl376329CompleteK01322COG1505Bacteroidetesunknown97.8797.5955.62
Bac_prolyl358048CompleteK01322COG1505unknownunknown98.2997.3554.35
Bac_prolyl362296CompleteK01322COG1505unknownunknown99.097.4854.27
Bac_prolyl364088CompleteK01322COG1505Bacteroidetesunknown96.394.6754.92
Bac_prolyl368034CompleteK01322COG1505Bacteroidetesunknown96.395.0754.24
Bac_prolyl366134CompleteK01322COG1505unknownunknown98.7297.6153.13
Bac_prolyl364851CompleteK01322COG1505Bacteroidetesunknown98.8697.8953.2
Bac_prolyl517805Lack 5'-endK01322COG1505unknownunknown87.6298.8957.88
Bac_prolyl367567CompleteK01322COG1505BacteroidetesAlistipes97.1696.0653.41
Bac_prolyl366668CompleteK01322COG1505BacteroidetesAlistipes97.1696.0653.91
Bac_prolyl406734CompleteK01322COG1505unknownunknown96.8798.8352.41
Bac_prolyl366679CompleteK01322COG1505BacteroidetesAlistipes96.4495.0854.76
Bac_prolyl364402CompleteK01322COG1505Bacteroidetesunknown96.5994.9553.73
Bac_prolyl371055CompleteK01322COG1505unknownunknown97.7297.1853.55
Bac_prolyl367728CompleteK01322COG1505BacteroidetesAlistipes96.5995.2254.39
Bac_prolyl366381CompleteK01322COG1505unknownunknown97.1696.0652.69
Bac_prolyl371878CompleteK01322COG1505BacteroidetesAlistipes98.2997.0353.02
Bac_prolyl390051CompleteK01322COG1505unknownunknown96.1698.1351.82
Bac_prolyl365432CompleteK01322COG1505unknownunknown98.2997.0551.65
Bac_prolyl364841CompleteK01322COG1505BacteroidetesAlistipes97.8796.3552.02
Bac_prolyl314260CompleteK01322COG1505unknownunknown99.095.3449.65
Bac_prolyl365422CompleteK01322COG1505unknownunknown99.1598.7451.55
Bac_prolyl355145CompleteK01322COG1505unknownunknown99.5799.349.86
Bac_prolyl366259CompleteK01322COG1505BacteroidetesAlistipes96.5995.2252.42
Bac_prolyl705508Lack 3'-endK01322COG1505unknownunknown76.6796.0860.3
Bac_prolyl362455CompleteK01322COG1505unknownunknown99.098.3249.72
Bac_prolyl456860Lack 5'-endK01322COG1505BacteroidetesAlistipes92.698.6353.35
Bac_prolyl401199CompleteK01322COG1505unknownunknown96.0297.2447.86
Bac_prolyl663545Lack 3'-endK01322COG1505unknownunknown81.0899.6551.66
Bac_prolyl784672Lack 3'-endK01322COG1505unknownunknown76.1100.053.25
Bac_prolyl850053Lack 5'-endK01322COG1505BacteroidetesAlistipes72.8398.2753.29
Bac_prolyl933971Lack 3'-endK01322COG1505unknownunknown70.55100.050.5
Bac_prolyl767550Lack both endsK01322COG1505unknownunknown73.5494.6630.6
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyRikenellaceae0.5412.36e-1425.57e-140
genusAlistipes0.5412.36e-1425.57e-140
classBacteroidia0.5392.05e-1411.95e-139
orderBacteroidales0.5392.05e-1411.95e-139
phylumBacteroidetes0.5392.07e-1411.95e-139
familyBacteroidaceae0.4961.96e-1161.32e-114
genusBacteroides0.4961.96e-1161.32e-114
familyPorphyromonadaceae0.4658.88e-1015.24e-99
genusParabacteroides0.4533.17e-951.66e-93
phylumFirmicutes-0.4483.4e-931.6e-91
speciesBacteroides_ovatus0.4341.07e-864.59e-85
classBacilli-0.3841.01e-663.97e-65
orderLactobacillales-0.3824.15e-661.51e-64
genusDorea-0.3654.85e-601.64e-58
orderClostridiales-0.3641.05e-593.13e-58
classClostridia-0.3641.06e-593.13e-58
familyLachnospiraceae-0.3641.54e-594.28e-58
familyOscillospiraceae0.3565.49e-571.36e-55
genusOscillibacter0.3565.49e-571.36e-55
familyStreptococcaceae-0.3551.21e-562.86e-55
speciesAlistipes_putredinis0.3535.22e-561.17e-54
genusStreptococcus-0.355.34e-551.15e-53
speciesOdoribacter_splanchnicus0.3461.38e-532.83e-52
genusOdoribacter0.3445.44e-531.07e-51
speciesBacteroides_thetaiotaomicron0.3415.17e-529.76e-51
speciesOscillibacter_unclassified0.341.01e-511.83e-50
speciesRuminococcus_obeum-0.3361.38e-502.41e-49
phylumActinobacteria-0.3322.69e-494.38e-48
classActinobacteria-0.3322.69e-494.38e-48
speciesStreptococcus_salivarius-0.3221.62e-462.55e-45
familyActinomycetaceae-0.3191.33e-452.03e-44
genusActinomyces-0.3184e-455.9e-44
speciesDorea_longicatena-0.3122.19e-433.13e-42
speciesAlistipes_onderdonkii0.3081.87e-422.6e-41
familyPeptostreptococcaceae-0.3075.59e-427.54e-41
genusPeptostreptococcaceae_noname-0.3036.44e-418.44e-40
speciesDorea_formicigenerans-0.3012.33e-402.97e-39
orderBifidobacteriales-0.2963.1e-393.75e-38
familyBifidobacteriaceae-0.2963.1e-393.75e-38
speciesBacteroides_uniformis0.2965.25e-396.2e-38
orderActinomycetales-0.2959.62e-391.11e-37
genusBifidobacterium-0.2931.96e-382.2e-37
speciesAlistipes_shahii0.2923.83e-384.2e-37
speciesStreptococcus_sanguinis-0.2924.98e-385.34e-37
orderCoriobacteriales-0.2911.08e-371.11e-36
familyCoriobacteriaceae-0.2911.08e-371.11e-36
speciesBacteroides_xylanisolvens0.291.16e-371.16e-36
genusBlautia-0.2892.7e-372.66e-36
speciesEubacterium_hallii-0.2861.28e-361.23e-35
familyBacillales_noname-0.2765.65e-345.23e-33
genusGemella-0.2765.65e-345.23e-33
speciesStreptococcus_parasanguinis-0.2758.86e-348.04e-33
orderBacillales-0.2741.5e-331.34e-32
speciesRuminococcus_sp_5_1_39BFAA-0.2725e-334.37e-32
speciesAlistipes_finegoldii0.2691.87e-321.6e-31
speciesBacteroides_cellulosilyticus0.2661.13e-319.52e-31
speciesAnaerostipes_hadrus-0.2651.86e-311.54e-30
classDeltaproteobacteria0.2644.13e-313.25e-30
orderDesulfovibrionales0.2644.13e-313.25e-30
familyDesulfovibrionaceae0.2644.13e-313.25e-30
speciesCoprococcus_catus-0.2634.59e-313.55e-30
speciesCoprococcus_comes-0.262.31e-301.76e-29
genusSolobacterium-0.2562.95e-292.18e-28
speciesSolobacterium_moorei-0.2562.95e-292.18e-28
speciesBilophila_unclassified0.2531.13e-288.21e-28
genusBilophila0.2531.2e-288.58e-28
speciesLachnospiraceae_bacterium_5_1_63FAA-0.2531.32e-289.3e-28
genusAnaerostipes-0.2498.79e-286.1e-27
speciesCollinsella_aerofaciens-0.2464.35e-272.98e-26
familyRuminococcaceae-0.2456.58e-274.44e-26
familyLactobacillaceae-0.2456.85e-274.55e-26
genusCoprococcus-0.2447.7e-275.05e-26
genusLactobacillus-0.2372.26e-251.46e-24
speciesBacteroides_fragilis0.2373.13e-252e-24
genusCollinsella-0.2341.33e-248.37e-24
speciesBifidobacterium_longum-0.2315.27e-243.27e-23
classErysipelotrichia-0.2222.3e-221.37e-21
orderErysipelotrichales-0.2222.3e-221.37e-21
familyErysipelotrichaceae-0.2222.3e-221.37e-21
genusRuminococcus-0.227.28e-224.3e-21
genusFlavonifractor0.2172.04e-211.17e-20
speciesFlavonifractor_plautii0.2172.04e-211.17e-20
speciesBilophila_wadsworthia0.2163.1e-211.76e-20
speciesStreptococcus_mitis_oralis_pneumoniae-0.2155.96e-213.35e-20
genusErysipelotrichaceae_noname-0.2131.31e-207.27e-20
genusRothia-0.2112.57e-201.41e-19
orderBurkholderiales0.2112.98e-201.62e-19
familyMicrococcaceae-0.2113.33e-201.79e-19
speciesRothia_mucilaginosa-0.2095.74e-203.04e-19
classBetaproteobacteria0.2095.81e-203.05e-19
speciesBifidobacterium_adolescentis-0.2097.7e-203.99e-19
speciesStreptococcus_mutans-0.2081.19e-196.11e-19
speciesClostridium_citroniae0.2071.7e-198.63e-19
speciesClostridium_asparagiforme0.2037.45e-193.74e-18
speciesBacteroides_nordii0.2038.79e-194.37e-18
speciesStreptococcus_australis-0.2021.26e-186.2e-18
familyClostridiales_noname0.2011.39e-186.76e-18
speciesStreptococcus_thermophilus-0.2011.56e-187.51e-18
speciesAnaerotruncus_colihominis0.2011.66e-187.91e-18
speciesClostridium_bartlettii-0.22.21e-181.04e-17
speciesLachnospiraceae_bacterium_7_1_58FAA0.1993.15e-181.47e-17
speciesEubacterium_ramulus-0.1985.52e-182.55e-17
speciesStreptococcus_vestibularis-0.1986.47e-182.96e-17
speciesPeptostreptococcaceae_noname_unclassified-0.1978.53e-183.87e-17
speciesRuminococcus_torques-0.1979.35e-184.2e-17
speciesStreptococcus_gordonii-0.1951.84e-178.19e-17
speciesBacteroides_vulgatus0.1952.12e-179.35e-17
speciesStreptococcus_anginosus-0.1918.61e-173.76e-16
genusOlsenella-0.191.03e-164.46e-16
familyBacteroidales_noname0.1891.75e-167.38e-16
genusBacteroidales_noname0.1891.75e-167.38e-16
speciesBacteroidales_bacterium_ph80.1891.75e-167.38e-16
speciesLactobacillus_rhamnosus-0.1858.15e-163.4e-15
speciesBacteroides_intestinalis0.1789.62e-153.98e-14
familySutterellaceae0.1771.27e-145.21e-14
speciesClostridiales_bacterium_1_7_47FAA0.1752.69e-141.09e-13
familyEnterococcaceae-0.1743.45e-141.39e-13
speciesParabacteroides_distasonis0.1726.51e-142.6e-13
genusEnterococcus-0.1726.98e-142.77e-13
familyLeuconostocaceae-0.1711.05e-134.13e-13
speciesOlsenella_unclassified-0.1691.88e-137.33e-13
speciesParabacteroides_merdae0.1682.88e-131.11e-12
speciesAlistipes_indistinctus0.1673.44e-131.32e-12
genusLeuconostoc-0.1656.18e-132.35e-12
speciesBifidobacterium_animalis-0.1656.67e-132.52e-12
familyEubacteriaceae-0.1649.04e-133.39e-12
genusEubacterium-0.1649.96e-133.7e-12
genusParasutterella0.1641.03e-123.77e-12
speciesParasutterella_excrementihominis0.1641.03e-123.77e-12
genusPeptostreptococcus-0.1641.12e-124.07e-12
speciesAlistipes_sp_AP110.1621.62e-125.84e-12
genusButyricimonas0.1621.72e-126.1e-12
speciesButyricimonas_synergistica0.1621.72e-126.1e-12
speciesEubacterium_biforme-0.1612.8e-129.86e-12
speciesBifidobacterium_dentium-0.163.04e-121.06e-11
speciesClostridium_hathewayi0.1594.59e-121.59e-11
genusLactococcus-0.1594.93e-121.7e-11
speciesLactobacillus_casei_paracasei-0.1595.04e-121.72e-11
familyBurkholderiales_noname0.1561.13e-113.84e-11
speciesLactococcus_lactis-0.1551.44e-114.85e-11
genusBurkholderiales_noname0.1551.55e-115.15e-11
speciesBurkholderiales_bacterium_1_1_470.1551.55e-115.15e-11
speciesBacteroides_caccae0.1551.59e-115.25e-11
speciesPropionibacterium_freudenreichii-0.1541.95e-116.39e-11
speciesClostridium_symbiosum0.1514.89e-111.59e-10
speciesBacteroides_dorei0.157.99e-112.58e-10
speciesTuricibacter_sanguinis-0.1471.47e-104.72e-10
genusClostridiales_noname0.1471.61e-105.13e-10
genusClostridiaceae_noname0.1453.06e-109.63e-10
speciesClostridiaceae_bacterium_JC1180.1453.06e-109.63e-10
genusPropionibacterium-0.1444.33e-101.35e-09
speciesOscillibacter_sp_KLE_17280.1435.81e-101.8e-09
genusLachnospiraceae_noname-0.1426.21e-101.92e-09
speciesBifidobacterium_catenulatum-0.1382.25e-096.9e-09
genusAnaerotruncus0.1363.45e-091.05e-08
genusHoldemania0.1363.59e-091.09e-08
speciesEnterococcus_faecalis-0.1354.3e-091.29e-08
speciesOscillibacter_sp_KLE_17450.1354.71e-091.41e-08
speciesParabacteroides_unclassified0.1345.66e-091.68e-08
speciesLactobacillus_delbrueckii-0.1328.87e-092.62e-08
speciesPeptostreptococcus_stomatis-0.1311.25e-083.66e-08
speciesPrevotella_copri-0.1311.34e-083.9e-08
speciesLactobacillus_gasseri-0.1311.37e-083.97e-08
speciesEnterococcus_faecium-0.131.85e-085.32e-08
speciesParabacteroides_goldsteinii0.1283e-088.58e-08
speciesMethanobrevibacter_smithii-0.1246.65e-081.89e-07
genusCatenibacterium-0.1247.7e-082.16e-07
speciesCatenibacterium_mitsuokai-0.1247.7e-082.16e-07
genusTuricibacter-0.1248.07e-082.25e-07
familyClostridiales_Family_XI_Incertae_Sedis-0.1231.03e-072.86e-07
speciesAlistipes_senegalensis0.122.04e-075.63e-07
phylumEuryarchaeota-0.1192.66e-077.3e-07
speciesClostridium_bolteae0.1173.61e-079.85e-07
speciesGemella_morbillorum-0.1173.72e-071.01e-06
classMethanobacteria-0.1164.62e-071.23e-06
orderMethanobacteriales-0.1164.62e-071.23e-06
familyMethanobacteriaceae-0.1164.62e-071.23e-06
speciesClostridium_sp_ATCC_BAA_4420.1155.56e-071.47e-06
genusMethanobrevibacter-0.1156.18e-071.63e-06
genusAdlercreutzia-0.1147.57e-071.97e-06
speciesAdlercreutzia_equolifaciens-0.1147.57e-071.97e-06
speciesLactobacillus_fermentum-0.1148.41e-072.18e-06
speciesEubacterium_sp_3_1_310.1139.13e-072.35e-06
genusMethanosphaera-0.1111.61e-064.11e-06
speciesMethanosphaera_stadtmanae-0.1111.61e-064.11e-06
speciesBifidobacterium_bifidum-0.1092.07e-065.25e-06
speciesRuminococcus_sp_JC304-0.1092.14e-065.4e-06
speciesEggerthella_sp_1_3_56FAA-0.1092.32e-065.82e-06
phylumViruses_noname-0.1083.11e-067.73e-06
classViruses_noname-0.1083.11e-067.73e-06
speciesBacteroides_coprocola-0.1073.87e-069.56e-06
genusSiphoviridae_noname-0.1064.53e-061.11e-05
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genusMitsuokella-0.060.009490.0156
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speciesCampylobacter_concisus-0.0590.01110.0179
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genusMegasphaera-0.0590.01120.0179
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speciesAggregatibacter_segnis-0.0560.0150.0237
speciesVeillonella_dispar-0.0560.0150.0237
speciesEnterobacter_cloacae-0.0560.01580.0249
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speciesMitsuokella_unclassified-0.0550.01780.0276
speciesHaemophilus_paraphrohaemolyticus-0.0540.01870.0289
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0540.01910.0295
speciesOdoribacter_unclassified-0.0540.01940.0298
speciesClostridium_leptum0.0540.01960.0299
speciesEscherichia_unclassified-0.0540.01960.0299
speciesLeuconostoc_lactis-0.0540.02040.0311
speciesBacteroides_eggerthii-0.0530.0220.0334
speciesPorphyromonas_asaccharolytica0.0520.02450.0371
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speciesLactobacillus_ruminis-0.050.03040.0454
speciesMegamonas_funiformis-0.050.03090.046
speciesBlautia_hydrogenotrophica-0.050.03170.0471
genusPyramidobacter0.0490.0340.0502
speciesPyramidobacter_piscolens0.0490.0340.0502
phylumSynergistetes0.0470.04070.0593
classSynergistia0.0470.04070.0593
orderSynergistales0.0470.04070.0593
familySynergistaceae0.0470.04070.0593
speciesParaprevotella_xylaniphila-0.0470.04270.062
speciesRuminococcus_lactaris-0.0460.04440.0643
familyMyoviridae-0.0460.04480.0647
familyAcidaminococcaceae-0.0460.04710.0678
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familyViruses_noname-0.0450.05130.0731
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speciesDorea_unclassified0.0450.05310.0753
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genusKlebsiella-0.0430.06540.0913
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speciesLachnospiraceae_bacterium_1_4_56FAA-0.040.08170.112
speciesPrevotella_bivia0.040.08180.112
speciesLachnospiraceae_bacterium_3_1_46FAA0.040.08320.113
genusEscherichia-0.040.0840.114
speciesLactobacillus_salivarius-0.040.08520.116
speciesLachnospiraceae_bacterium_6_1_63FAA-0.040.08550.116
speciesRoseburia_intestinalis-0.0390.08850.119
genusCitrobacter-0.0390.08940.12
speciesCitrobacter_unclassified-0.0390.09270.124
genusPantoea-0.0380.09710.129
speciesPantoea_unclassified-0.0380.09710.129
speciesAcidaminococcus_fermentans-0.0380.09810.13
genusRoseburia-0.0380.09870.131
genusCoprobacter0.0380.1030.136
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speciesBifidobacterium_pseudocatenulatum-0.0360.1180.155
speciesClostridium_spiroforme-0.0360.1230.161
speciesEscherichia_coli-0.0360.1240.162
speciesStreptococcus_infantarius-0.0350.1260.164
speciesCitrobacter_freundii-0.0350.1280.166
speciesCollinsella_intestinalis0.0350.1310.169
genusProteus-0.0340.1440.186
speciesLactococcus_phage_jm2-0.0340.1460.188
speciesSutterella_parvirubra0.0340.1470.189
speciesRoseburia_hominis0.0330.150.192
speciesHoldemania_unclassified0.0330.1570.2
genusPorphyromonas0.0320.1640.209
genusEggerthella-0.0320.1660.21
speciesBacteroides_coprophilus-0.0320.1660.21
genusBarnesiella0.0310.1770.223
speciesBarnesiella_intestinihominis0.0310.1770.223
genusAcidaminococcus-0.0310.1850.232
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0310.1860.233
speciesMegamonas_rupellensis-0.0290.2050.256
speciesPrevotella_buccae0.0280.2230.278
speciesBacteroides_pectinophilus-0.0280.2330.289
speciesLactococcus_phage_bIL67-0.0260.260.322
genusFusobacterium-0.0260.2610.322
familyPodoviridae0.0260.2660.328
speciesLactococcus_phage_phi7-0.0250.2720.334
speciesBlautia_producta-0.0250.2740.336
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0250.2780.34
speciesBacteroides_massiliensis0.0250.2860.349
speciesRuminococcus_callidus-0.0250.2870.349
familyFusobacteriaceae-0.0240.2960.359
speciesClostridium_sp_KLE_17550.0240.3010.364
speciesMegasphaera_unclassified-0.0240.3020.365
speciesCollinsella_tanakaei0.0230.3110.374
speciesDialister_invisus0.0230.3110.374
familyClostridiaceae0.0230.3230.387
speciesAlistipes_unclassified-0.0220.3310.396
genusPeptoniphilus-0.0220.3370.402
phylumFusobacteria-0.0220.3410.403
classFusobacteriia-0.0220.3410.403
orderFusobacteriales-0.0220.3410.403
speciesKlebsiella_sp_MS_92_3-0.0220.3440.406
speciesRoseburia_inulinivorans-0.0220.3490.411
speciesBacteroides_barnesiae-0.0210.3530.414
genusClostridium0.0210.3630.425
speciesStreptococcus_phage_Sfi21-0.0210.3750.438
speciesEggerthella_unclassified-0.020.3790.442
speciesSlackia_piriformis-0.020.3820.444
speciesStreptococcus_pasteurianus-0.020.3830.444
genusAcidaminococcaceae_unclassified0.020.3850.445
speciesCoprobacillus_sp_D6-0.020.3890.449
speciesProteus_mirabilis-0.020.390.449
speciesBacteroides_clarus0.0190.4050.465
speciesBifidobacterium_angulatum-0.0190.4190.48
speciesOdoribacter_laneus-0.0180.430.491
speciesBacteroides_sp_4_3_47FAA0.0180.4350.496
speciesEnterobacteria_phage_HK5440.0180.4370.497
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speciesLachnospiraceae_bacterium_5_1_57FAA0.0170.4750.536
genusTunalikevirus-0.0150.5050.569
orderAeromonadales-0.0150.510.573
genusMyoviridae_noname-0.0150.5120.574
speciesFusobacterium_varium0.0150.5130.574
speciesKlebsiella_pneumoniae-0.0150.5170.577
genusC2likevirus0.0140.5330.593
speciesC2likevirus_unclassified0.0140.540.6
genusButyricicoccus0.0140.5460.602
speciesButyricicoccus_pullicaecorum0.0140.5460.602
phylumVerrucomicrobia-0.0140.5520.602
classVerrucomicrobiae-0.0140.5520.602
orderVerrucomicrobiales-0.0140.5520.602
familyVerrucomicrobiaceae-0.0140.5520.602
genusAkkermansia-0.0140.5520.602
speciesAkkermansia_muciniphila-0.0140.5520.602
speciesBacteroides_sp_3_1_190.0140.5560.604
speciesPorphyromonas_uenonis0.0140.5570.604
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speciesClostridium_nexile0.0130.5650.61
genusSubdoligranulum-0.0120.5940.639
speciesKlebsiella_unclassified-0.0120.5940.639
genusMorganella-0.0120.610.653
speciesMorganella_morganii-0.0120.610.653
genusDialister-0.0110.6220.664
genusCoriobacteriaceae_noname-0.0090.6910.736
speciesErysipelotrichaceae_bacterium_3_1_53-0.0080.7170.762
speciesKlebsiella_phage_KP36-0.0080.7190.763
speciesButyrivibrio_unclassified-0.0080.7220.764
speciesCoriobacteriaceae_bacterium_phI-0.0070.7580.799
speciesEubacterium_siraeum-0.0070.7580.799
speciesParabacteroides_sp_20_30.0060.7920.833
speciesLactococcus_phage_936_sensu_lato0.0060.8010.84
speciesEubacterium_limosum-0.0060.8120.85
speciesLactobacillus_reuteri-0.0050.8220.858
speciesRoseburia_unclassified-0.0050.8250.86
genusSutterella0.0050.8330.866
speciesErysipelotrichaceae_bacterium_6_1_45-0.0050.8440.876
speciesCoprobacillus_sp_29_10.0040.8590.886
speciesSutterella_wadsworthensis-0.0040.8590.886
speciesEubacterium_dolichum-0.0040.8620.886
genusSuccinatimonas0.0040.8630.886
speciesSuccinatimonas_hippei0.0040.8630.886
genusLambdalikevirus0.0040.8740.895
speciesLachnospiraceae_bacterium_2_1_46FAA0.0040.8780.897
genusCampylobacter-0.0030.8890.906
familyCampylobacteraceae-0.0030.8950.91
speciesFusobacterium_mortiferum-0.0030.9040.918
speciesBacteroides_salanitronis0.0020.920.932
speciesParabacteroides_sp_D130.0020.9410.951
speciesEubacterium_eligens0.0010.9740.978
classEpsilonproteobacteria0.0010.9750.978
orderCampylobacterales0.0010.9750.978
familySuccinivibrionaceae0.0010.9760.978
speciesAcidaminococcus_unclassified0.00.9860.986
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Rheumatoid arthritisChina127980.06038218877880.04915004014460.02618265325120126.70957
Type II diabetesDenmark752770.08574614343710.0741442771440.1423350551091116936.6113
ObesityDenmark1691230.07556056581050.07142683595790.2205159024191173838.5979
Colorectal cancerAustria64350.03054884476610.02126549096320.252016067321055535.7119
Liver cirrhosisChina1201140.07725543683350.08380776377620.2575853437882032268.2656
Type II diabetesSweden53920.03171703595180.03943913900150.3034339363291046835.4487
Ulcerative colitisSpain78660.05257578932070.04668844369140.3688252983061584752.2762
Type II diabetesChina1831850.08135294212890.07808552202650.3897741219421868261.7403
Crohns diseaseSpain17660.05763476220210.04668844369140.8878320456482878295.7007
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382