MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-08 04:39:30 PST
Job id & description: 2166, nn
Query type: protein
Count queries & homologs: 1, 29
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|A4ECA9|1-2633419663CompleteK07124COG0300ActinobacteriaCollinsella100.0100.099.62
sp|A4ECA9|1-2633421447CompleteK07124COG0300ActinobacteriaCollinsella100.0100.090.49
sp|A4ECA9|1-2633162571CompleteK07124COG0300ActinobacteriaCollinsella100.094.2789.73
sp|A4ECA9|1-2633421475CompleteK07124COG0300Actinobacteriaunknown100.0100.085.93
sp|A4ECA9|1-2633417244CompleteK07124COG0300FirmicutesBlautia100.0100.084.41
sp|A4ECA9|1-2633236204CompleteK07124COG0300FirmicutesBlautia100.095.9975.29
sp|A4ECA9|1-2633398020CompleteK07124COG0300FirmicutesBlautia100.099.6274.9
sp|A4ECA9|1-2633355336CompleteK07124COG0300unknownunknown99.6298.574.52
sp|A4ECA9|1-2633347413CompleteK07124COG0300Actinobacteriaunknown99.6298.574.52
sp|A4ECA9|1-2633456781CompleteK07124COG0300unknownunknown92.0291.5742.98
sp|A4ECA9|1-2633429729CompleteK07124COG0300unknownunknown84.7983.5931.88
sp|A4ECA9|1-2633433525CompleteK07124COG0300unknownunknown84.7983.5931.44
sp|A4ECA9|1-2634099231Lack 3'-endK07124COG0300unknownunknown84.7995.6330.57
sp|A4ECA9|1-2633526130CompleteK07124COG0300unknownunknown71.8678.2130.35
sp|A4ECA9|1-2633436414CompleteK07124COG0300unknownunknown84.7983.5930.13
sp|A4ECA9|1-2633448508CompleteK07124COG0300unknownunknown84.7983.9130.17
sp|A4ECA9|1-2633452288CompleteK07124COG0300unknownunknown84.7983.9130.3
sp|A4ECA9|1-2633280837CompleteK07124COG0300unknownunknown75.2973.0631.5
sp|A4ECA9|1-2633360744CompleteK07124COG0300FirmicutesAnaerotruncus74.973.7830.46
sp|A4ECA9|1-2633490611CompleteK07124COG0300unknownunknown84.7984.5630.74
sp|A4ECA9|1-2633249268Lack 5'-endK07124COG0300FirmicutesFaecalibacterium79.8575.8230.05
sp|A4ECA9|1-2633195620CompleteK00059COG1028FirmicutesClostridium76.4373.6530.1
sp|A4ECA9|1-2633316603CompleteK07124COG0300unknownunknown73.3872.4930.1
sp|A4ECA9|1-2633709900CompleteK00059COG1028Firmicutesunknown72.2478.9530.65
sp|A4ECA9|1-2633411383CompleteK00540COG1028ProteobacteriaEnterobacter72.6271.9730.46
sp|A4ECA9|1-2633487443Lack both endsK00540COG1028FirmicutesCoprococcus72.2473.4630.05
sp|A4ECA9|1-2633786144CompleteK00059COG1028unknownunknown71.4881.8930.24
sp|A4ECA9|1-2633695959CompleteK00059COG1028unknownunknown71.176.6130.73
sp|A4ECA9|1-2633684812CompleteK00059COG1028unknownunknown70.3473.4930.05
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusBlautia0.4261.72e-838.12e-81
phylumBacteroidetes-0.3421.88e-522.24e-50
classBacteroidia-0.3421.9e-522.24e-50
orderBacteroidales-0.3421.9e-522.24e-50
familyLachnospiraceae0.3382.96e-512.79e-49
phylumFirmicutes0.3245.11e-474.02e-45
classBacilli0.3082.99e-422.02e-40
speciesRuminococcus_torques0.3034.53e-412.67e-39
orderLactobacillales0.3027.45e-413.91e-39
phylumActinobacteria0.2932.38e-381.02e-36
classActinobacteria0.2932.38e-381.02e-36
familyStreptococcaceae0.2879.12e-373.59e-35
familyPorphyromonadaceae-0.2852.37e-368.6e-35
genusStreptococcus0.2812.64e-358.9e-34
orderClostridiales0.286.09e-351.8e-33
classClostridia0.286.1e-351.8e-33
speciesRuminococcus_gnavus0.2718.02e-332.23e-31
orderBifidobacteriales0.2669.28e-322.31e-30
familyBifidobacteriaceae0.2669.28e-322.31e-30
speciesStreptococcus_salivarius0.2643.72e-318.78e-30
genusBifidobacterium0.2628.91e-312e-29
speciesRuminococcus_sp_5_1_39BFAA0.262.81e-306.03e-29
genusDorea0.2562.07e-294.25e-28
speciesDorea_formicigenerans0.2513.14e-286.18e-27
orderCoriobacteriales0.2499.99e-281.81e-26
familyCoriobacteriaceae0.2499.99e-281.81e-26
genusFaecalibacterium0.2481.6e-272.7e-26
speciesFaecalibacterium_prausnitzii0.2481.6e-272.7e-26
speciesLachnospiraceae_bacterium_5_1_63FAA0.2421.99e-263.21e-25
genusParabacteroides-0.2422.04e-263.21e-25
speciesRuminococcus_obeum0.245.98e-269.11e-25
familyBacillales_noname0.2381.67e-252.39e-24
genusGemella0.2381.67e-252.39e-24
genusOdoribacter-0.2372.59e-253.6e-24
speciesEubacterium_hallii0.2341.35e-241.82e-23
genusActinomyces0.2323.29e-244.31e-23
familyRikenellaceae-0.2315.65e-247.02e-23
genusAlistipes-0.2315.65e-247.02e-23
familyActinomycetaceae0.238.88e-241.07e-22
speciesStreptococcus_sanguinis0.2291.27e-231.5e-22
familyPeptostreptococcaceae0.2281.51e-231.74e-22
orderBacillales0.2272.24e-232.52e-22
speciesStreptococcus_parasanguinis0.2263.69e-234.05e-22
speciesOdoribacter_splanchnicus-0.2264.4e-234.72e-22
genusPeptostreptococcaceae_noname0.2264.71e-234.94e-22
speciesBifidobacterium_longum0.2249.68e-239.93e-22
genusSolobacterium0.2214.31e-224.24e-21
speciesSolobacterium_moorei0.2214.31e-224.24e-21
genusRuminococcus0.225.73e-225.52e-21
genusLachnospiraceae_noname0.2131.12e-201.06e-19
speciesStreptococcus_mitis_oralis_pneumoniae0.2112.47e-202.29e-19
genusAnaerostipes0.2112.73e-202.48e-19
speciesAlistipes_shahii-0.2071.24e-191.1e-18
familyLactobacillaceae0.2061.92e-191.68e-18
orderActinomycetales0.2053.77e-193.24e-18
genusLactobacillus0.2011.89e-181.59e-17
familyRuminococcaceae0.1961.01e-178.36e-17
speciesStreptococcus_australis0.1951.83e-171.49e-16
speciesAnaerostipes_hadrus0.1882.16e-161.73e-15
speciesDorea_longicatena0.183.88e-153.05e-14
speciesClostridium_bartlettii0.184.69e-153.63e-14
speciesCoprococcus_catus0.1788.4e-156.39e-14
genusEggerthella0.1771.17e-148.77e-14
speciesStreptococcus_gordonii0.1771.26e-149.29e-14
speciesCoprococcus_comes0.1743.85e-142.8e-13
speciesEggerthella_unclassified0.1728.12e-145.81e-13
speciesStreptococcus_anginosus0.1718.32e-145.86e-13
speciesAlistipes_senegalensis-0.171.44e-131e-12
familyBacteroidaceae-0.1674.27e-132.88e-12
genusBacteroides-0.1674.27e-132.88e-12
speciesStreptococcus_vestibularis0.1631.31e-128.71e-12
speciesAlistipes_indistinctus-0.1621.74e-121.14e-11
speciesCoprobacillus_unclassified0.163.38e-122.19e-11
genusDesulfovibrio-0.1594.82e-123.07e-11
genusCoprococcus0.1585.79e-123.64e-11
speciesAnaerotruncus_unclassified-0.1542.04e-111.27e-10
speciesLachnospiraceae_bacterium_1_4_56FAA0.1542.24e-111.37e-10
genusPeptostreptococcus0.1523.63e-112.2e-10
genusAnaerotruncus-0.1523.73e-112.23e-10
genusCollinsella0.1523.8e-112.24e-10
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1523.86e-112.25e-10
speciesAlistipes_putredinis-0.1515.06e-112.91e-10
speciesClostridium_ramosum0.1515.77e-113.28e-10
speciesParabacteroides_merdae-0.156.44e-113.62e-10
speciesEggerthella_lenta0.1499.21e-115.11e-10
speciesEubacterium_ramulus0.1499.81e-115.38e-10
speciesCollinsella_aerofaciens0.1481.34e-107.27e-10
familyLeuconostocaceae0.1443.81e-102.04e-09
classErysipelotrichia0.1434.89e-102.54e-09
orderErysipelotrichales0.1434.89e-102.54e-09
familyErysipelotrichaceae0.1434.89e-102.54e-09
genusCoprobacillus0.1426.38e-103.27e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1426.49e-103.29e-09
genusAdlercreutzia0.1427.8e-103.88e-09
speciesAdlercreutzia_equolifaciens0.1427.8e-103.88e-09
familyOxalobacteraceae-0.1391.47e-097.23e-09
genusOxalobacter-0.1381.83e-098.81e-09
speciesOxalobacter_formigenes-0.1381.83e-098.81e-09
speciesStreptococcus_mutans0.1372.64e-091.26e-08
speciesBacteroides_uniformis-0.1363.13e-091.48e-08
speciesClostridium_nexile0.1346.1e-092.85e-08
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1336.96e-093.22e-08
speciesBifidobacterium_adolescentis0.1337.09e-093.22e-08
genusButyricimonas-0.1337.16e-093.22e-08
speciesButyricimonas_synergistica-0.1337.16e-093.22e-08
speciesRothia_mucilaginosa0.1337.63e-093.4e-08
speciesLachnospiraceae_bacterium_1_1_57FAA0.1329.34e-094.09e-08
speciesPeptostreptococcus_stomatis0.1329.36e-094.09e-08
speciesDesulfovibrio_desulfuricans-0.1321.01e-084.37e-08
familyOscillospiraceae-0.1311.38e-085.86e-08
genusOscillibacter-0.1311.38e-085.86e-08
speciesAlistipes_finegoldii-0.1311.39e-085.86e-08
genusRothia0.1291.92e-088.02e-08
familyMicrococcaceae0.1292.14e-088.86e-08
speciesRoseburia_intestinalis0.1282.73e-081.12e-07
genusEnterococcus0.1264.3e-081.75e-07
familyEnterococcaceae0.1264.39e-081.77e-07
speciesVeillonella_atypica0.1264.99e-082e-07
speciesBacteroides_ovatus-0.1255.81e-082.3e-07
familyBacteroidales_noname-0.1247.6e-082.88e-07
genusBacteroidales_noname-0.1247.6e-082.88e-07
speciesBacteroidales_bacterium_ph8-0.1247.6e-082.88e-07
classDeltaproteobacteria-0.1247.63e-082.88e-07
orderDesulfovibrionales-0.1247.63e-082.88e-07
familyDesulfovibrionaceae-0.1247.63e-082.88e-07
speciesOscillibacter_unclassified-0.1221.24e-074.65e-07
genusRoseburia0.1221.28e-074.76e-07
speciesVeillonella_parvula0.121.97e-077.26e-07
speciesRoseburia_inulinivorans0.122.15e-077.87e-07
speciesRuminococcus_bromii0.1192.59e-079.4e-07
phylumVerrucomicrobia-0.1182.97e-071.03e-06
classVerrucomicrobiae-0.1182.97e-071.03e-06
orderVerrucomicrobiales-0.1182.97e-071.03e-06
familyVerrucomicrobiaceae-0.1182.97e-071.03e-06
genusAkkermansia-0.1182.97e-071.03e-06
speciesAkkermansia_muciniphila-0.1182.97e-071.03e-06
speciesBacteroides_thetaiotaomicron-0.1183.28e-071.13e-06
genusVeillonella0.1173.59e-071.23e-06
genusWeissella0.1174.09e-071.39e-06
speciesLactobacillus_sanfranciscensis0.1156.22e-072.1e-06
speciesLachnospiraceae_bacterium_6_1_63FAA0.1147.18e-072.4e-06
genusErysipelotrichaceae_noname0.1138.88e-072.94e-06
speciesEubacterium_siraeum-0.1138.92e-072.94e-06
speciesPeptostreptococcaceae_noname_unclassified0.1121.08e-063.54e-06
speciesAlistipes_sp_HGB5-0.111.68e-065.47e-06
speciesKlebsiella_oxytoca0.111.94e-066.27e-06
speciesStreptococcus_thermophilus0.112.01e-066.45e-06
familyPrevotellaceae-0.1082.71e-068.64e-06
genusEubacterium0.1073.37e-061.07e-05
speciesLactobacillus_gasseri0.1073.4e-061.07e-05
speciesParabacteroides_goldsteinii-0.1073.44e-061.08e-05
familyEubacteriaceae0.1073.59e-061.11e-05
speciesDorea_unclassified-0.1064.25e-061.31e-05
speciesTuricibacter_sanguinis0.1055.33e-061.63e-05
speciesLactobacillus_plantarum0.1055.72e-061.74e-05
familyMyoviridae0.1037.73e-062.34e-05
speciesAlistipes_onderdonkii-0.1038.14e-062.45e-05
speciesBacteroides_caccae-0.1038.68e-062.59e-05
speciesWeissella_confusa0.1029.6e-062.85e-05
familyVeillonellaceae0.1029.75e-062.88e-05
speciesLactobacillus_rhamnosus0.1021.05e-053.08e-05
orderEnterobacteriales0.1011.17e-053.39e-05
familyEnterobacteriaceae0.1011.17e-053.39e-05
speciesDesulfovibrio_piger-0.1011.21e-053.48e-05
speciesEnterococcus_faecium0.11.41e-054.03e-05
speciesBifidobacterium_catenulatum0.11.55e-054.41e-05
speciesEubacterium_rectale0.11.59e-054.49e-05
classGammaproteobacteria0.0991.94e-055.42e-05
speciesRuminococcus_sp_JC3040.0991.94e-055.42e-05
speciesBifidobacterium_bifidum0.0982.05e-055.69e-05
speciesBacteroides_dorei-0.0982.32e-056.38e-05
genusBarnesiella-0.0982.34e-056.38e-05
speciesBarnesiella_intestinihominis-0.0982.34e-056.38e-05
speciesClostridium_perfringens0.0972.66e-057.22e-05
speciesBifidobacterium_pseudocatenulatum0.0962.92e-057.88e-05
genusGordonibacter0.0953.55e-059.47e-05
speciesGordonibacter_pamelaeae0.0953.55e-059.47e-05
genusTuricibacter0.0954.03e-050.000107
genusLeuconostoc0.0954.09e-050.000108
speciesButyrivibrio_crossotus-0.0944.74e-050.000124
speciesBifidobacterium_dentium0.0935.14e-050.000134
genusKlebsiella0.0935.35e-050.000139
speciesEubacterium_ventriosum0.0936.01e-050.000155
classBetaproteobacteria-0.0927.3e-050.000187
genusPseudoflavonifractor-0.0917.61e-050.000193
speciesPseudoflavonifractor_capillosus-0.0917.61e-050.000193
orderBurkholderiales-0.0917.88e-050.000199
speciesGemella_morbillorum0.0918.11e-050.000204
speciesC2likevirus_unclassified-0.099.33e-050.000233
speciesWeissella_cibaria0.090.0001050.000261
speciesTuricibacter_unclassified0.0890.0001070.000264
speciesCitrobacter_freundii0.0890.0001130.000278
speciesVeillonella_unclassified0.0890.0001190.000291
speciesCitrobacter_unclassified0.0890.0001260.000307
genusC2likevirus-0.0880.0001470.000356
speciesBlautia_producta0.0870.0001540.000371
speciesBacteroides_cellulosilyticus-0.0870.0001570.000376
familySutterellaceae-0.0860.0001860.000443
speciesStreptococcus_lutetiensis0.0860.0001870.000444
genusCitrobacter0.0860.0001940.000458
genusPrevotella-0.0860.0001990.000467
genusLactococcus0.0840.0002750.000643
speciesErysipelotrichaceae_bacterium_2_2_44A0.0830.0003040.000707
speciesLactobacillus_mucosae0.0830.0003090.000715
speciesMegasphaera_micronuciformis0.0830.0003340.000769
speciesSubdoligranulum_unclassified-0.0830.0003360.00077
genusEscherichia0.0830.0003380.000771
genusSubdoligranulum-0.0810.0004250.000964
genusBilophila-0.0810.000490.00111
speciesEnterococcus_faecalis0.080.0005210.00117
speciesBilophila_unclassified-0.080.0005250.00117
speciesBilophila_wadsworthia-0.080.0005330.00119
genusCoprobacter-0.0790.0006170.00136
speciesCoprobacter_fastidiosus-0.0790.0006170.00136
speciesEubacterium_eligens-0.0790.0006510.00143
speciesParaprevotella_xylaniphila-0.0780.0007190.00157
genusMyoviridae_noname0.0780.0007510.00163
familyClostridiales_Family_XI_Incertae_Sedis0.0780.0007620.00165
speciesEscherichia_coli0.0770.0008670.00187
speciesBacteroides_xylanisolvens-0.0750.001130.00242
genusPropionibacterium0.0750.001140.00243
speciesLactobacillus_delbrueckii0.0740.001290.00274
speciesBifidobacterium_animalis0.0740.001430.00303
speciesParaprevotella_unclassified-0.0730.001490.00314
speciesPrevotella_copri-0.0730.001510.00317
speciesParaprevotella_clara-0.0730.001520.00317
genusMegasphaera0.0730.001670.00347
genusParaprevotella-0.0730.001690.00348
speciesLactococcus_lactis0.0730.001690.00348
speciesLactococcus_garvieae0.0720.001850.0038
phylumFusobacteria0.0720.00190.00385
classFusobacteriia0.0720.00190.00385
orderFusobacteriales0.0720.00190.00385
speciesParabacteroides_distasonis-0.0720.001940.00391
speciesParvimonas_unclassified0.0710.002060.00414
genusParvimonas0.0710.002080.00416
speciesLactobacillus_vaginalis0.0710.00220.00438
speciesKlebsiella_pneumoniae0.0710.002240.00444
familyFusobacteriaceae0.070.002360.00466
speciesRoseburia_hominis-0.070.002420.00476
speciesEggerthella_sp_1_3_56FAA0.070.002530.00495
genusClostridium0.070.002540.00495
classMethanobacteria-0.0690.002790.00538
orderMethanobacteriales-0.0690.002790.00538
familyMethanobacteriaceae-0.0690.002790.00538
speciesLactobacillus_crispatus0.0690.002910.00558
classNegativicutes0.0680.003060.00582
orderSelenomonadales0.0680.003060.00582
speciesEubacterium_cylindroides0.0680.003090.00586
speciesBacteroides_salyersiae-0.0680.003160.00597
speciesBacteroides_intestinalis-0.0680.003260.00612
speciesEubacterium_dolichum0.0680.003270.00612
genusFusobacterium0.0670.003750.00699
speciesPropionibacterium_freudenreichii0.0670.003760.00699
familyStaphylococcaceae0.0670.003920.00725
speciesEnterobacter_cloacae0.0670.003930.00725
familyClostridiaceae0.0660.004230.00777
genusOlsenella0.0660.004260.00779
phylumEuryarchaeota-0.0660.00430.00784
speciesMethanobrevibacter_unclassified-0.0660.004380.00795
genusCatenibacterium-0.0650.004650.00838
speciesCatenibacterium_mitsuokai-0.0650.004650.00838
speciesLeuconostoc_lactis0.0650.005140.00922
genusCoriobacteriaceae_noname0.0640.005620.01
genusMethanobrevibacter-0.0640.005680.0101
genusEnterobacter0.0640.00570.0101
speciesLactobacillus_fermentum0.0640.005770.0102
speciesLactobacillus_casei_paracasei0.0640.00580.0102
speciesBacteroides_vulgatus-0.0640.005880.0103
speciesBlautia_hydrogenotrophica0.0640.005940.0104
speciesParabacteroides_sp_D13-0.0630.006130.0107
speciesVeillonella_dispar0.0630.006140.0107
genusStaphylococcus0.0620.007310.0126
speciesMethanobrevibacter_smithii-0.0610.008270.0142
genusButyrivibrio-0.0610.008410.0144
speciesCoriobacteriaceae_bacterium_phI0.0610.00850.0145
speciesCampylobacter_concisus0.060.009420.0161
speciesBacteroides_nordii-0.060.009490.0161
speciesKlebsiella_sp_MS_92_30.060.009770.0165
speciesAnaerostipes_unclassified0.060.009960.0168
speciesLactobacillus_salivarius0.0590.01050.0176
speciesKlebsiella_unclassified0.0590.01060.0177
speciesOscillibacter_sp_KLE_1728-0.0590.01090.0182
genusAggregatibacter0.0590.01140.0189
speciesFusobacterium_ulcerans0.0580.01150.019
speciesOscillibacter_sp_KLE_1745-0.0580.01240.0204
speciesBacteroides_finegoldii-0.0580.01240.0204
genusSutterellaceae_unclassified-0.0570.01430.0234
speciesStreptococcus_infantarius0.0560.01560.0255
genusAcidaminococcaceae_unclassified-0.0560.01620.0264
speciesFusobacterium_nucleatum0.0550.01670.0271
speciesClostridium_bolteae0.0550.0170.0275
speciesFusobacterium_varium0.0550.01730.0279
speciesBacteroides_pectinophilus-0.0530.0210.0337
genusDialister0.0530.02130.0341
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0520.02450.0391
speciesOlsenella_unclassified0.0520.02480.0394
speciesCollinsella_unclassified-0.0510.02670.0423
speciesRuminococcus_champanellensis-0.0510.02720.0429
familyPropionibacteriaceae0.0510.02770.0436
speciesParabacteroides_unclassified-0.0510.02790.0438
speciesDialister_invisus0.0510.0280.0438
orderViruses_noname0.0510.02870.0447
speciesEscherichia_unclassified0.050.02970.0461
speciesCoprobacillus_sp_29_1-0.050.0320.0495
genusMethanosphaera-0.0490.03360.0517
speciesMethanosphaera_stadtmanae-0.0490.03360.0517
speciesMegasphaera_elsdenii0.0490.03590.055
speciesRuminococcus_callidus0.0480.03720.0568
speciesErysipelotrichaceae_bacterium_6_1_450.0480.03760.0572
genusProteus0.0470.04040.0613
speciesAnaerotruncus_colihominis-0.0470.04170.0631
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0460.04790.0722
speciesParabacteroides_johnsonii-0.0450.05110.0768
speciesBacteroides_barnesiae-0.0450.05170.0774
orderPseudomonadales0.0450.05180.0774
speciesOdoribacter_laneus-0.0450.05360.0795
genusRuminococcaceae_noname-0.0450.05370.0795
speciesRuminococcaceae_bacterium_D16-0.0450.05370.0795
familySiphoviridae-0.0440.05570.0822
speciesMegamonas_unclassified0.0440.05620.0825
genusMegamonas0.0440.05630.0825
speciesEnterobacteria_phage_HK5440.0440.05780.0845
speciesBacteroides_coprophilus-0.0440.05980.0871
genusCampylobacter0.0430.06110.0887
speciesLachnospiraceae_bacterium_5_1_57FAA0.0430.06250.0905
speciesLactobacillus_oris0.0430.0640.0924
speciesAggregatibacter_segnis0.0430.06440.0927
familyCampylobacteraceae0.0430.06520.0935
speciesLactococcus_phage_936_sensu_lato-0.0420.06740.0964
genusClostridiaceae_noname-0.0420.06840.0972
speciesClostridiaceae_bacterium_JC118-0.0420.06840.0972
speciesBacteroides_faecis-0.0420.06930.0982
speciesBacteroides_stercoris-0.0420.07240.102
speciesHaemophilus_sputorum0.0410.07370.104
speciesLachnospiraceae_bacterium_2_1_46FAA0.0410.07750.109
speciesErysipelotrichaceae_bacterium_21_30.0410.07910.111
speciesBacteroides_oleiciplenus-0.0410.07920.111
genusClostridiales_noname-0.040.08310.116
speciesAcidaminococcus_intestini0.0390.08990.125
speciesMegasphaera_unclassified0.0390.09080.126
genusSutterella-0.0390.09140.126
speciesLactobacillus_acidophilus0.0390.09530.131
speciesHaemophilus_paraphrohaemolyticus0.0380.0980.134
genusMorganella0.0380.10.136
speciesMorganella_morganii0.0380.10.136
speciesProteus_mirabilis0.0380.1020.139
speciesPeptostreptococcus_anaerobius0.0380.1030.14
classEpsilonproteobacteria0.0370.1060.143
orderCampylobacterales0.0370.1060.143
speciesEnterobacter_aerogenes0.0370.1070.144
speciesAlistipes_sp_AP11-0.0370.110.147
speciesLactobacillus_ruminis0.0370.1110.148
speciesSutterella_wadsworthensis-0.0370.1130.151
familyClostridiales_noname-0.0370.1140.152
speciesClostridium_sp_L2_50-0.0360.1230.163
speciesEubacterium_sp_3_1_31-0.0340.1420.188
genusPyramidobacter0.0330.1490.196
speciesPyramidobacter_piscolens0.0330.1490.196
speciesStreptococcus_pasteurianus0.0330.1590.208
speciesPrevotella_stercorea-0.0320.1640.214
genusLambdalikevirus0.0310.1780.232
genusActinobacillus0.0310.180.233
speciesActinobacillus_unclassified0.0310.180.233
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0310.1860.241
speciesSlackia_piriformis-0.030.1880.242
speciesBacteroides_eggerthii-0.0290.2060.265
speciesMitsuokella_unclassified-0.0290.2180.28
genusMitsuokella-0.0280.2210.283
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0280.230.293
speciesBacteroides_sp_3_1_190.0270.2420.308
genusAcidaminococcus0.0270.2430.308
speciesCoprococcus_eutactus-0.0270.2510.318
speciesHoldemania_sp_AP20.0260.2610.329
speciesStreptococcus_phage_Sfi210.0260.2640.332
genusButyricicoccus0.0260.2670.334
speciesButyricicoccus_pullicaecorum0.0260.2670.334
genusParasutterella-0.0260.2680.334
speciesParasutterella_excrementihominis-0.0260.2680.334
speciesBacteroides_salanitronis0.0260.2690.334
speciesBacteroides_clarus-0.0250.2790.346
speciesBacteroides_sp_4_3_47FAA-0.0240.290.358
speciesHaemophilus_parainfluenzae0.0240.2960.365
speciesPrevotella_buccae0.0240.3010.37
phylumProteobacteria0.0240.3060.375
speciesButyrivibrio_unclassified0.0240.3090.378
speciesClostridium_spiroforme0.0230.320.39
familyAcidaminococcaceae-0.0230.3250.395
speciesFusobacterium_mortiferum0.0230.3270.397
speciesMegamonas_rupellensis0.0220.3380.409
genusHaemophilus0.0220.3410.412
speciesHoldemania_unclassified-0.0220.3420.412
genusSlackia-0.0220.3460.416
speciesCollinsella_intestinalis0.0220.3510.42
speciesEubacterium_limosum0.0210.3550.424
speciesLactococcus_phage_phi7-0.020.3790.452
genusSuccinatimonas-0.020.3830.454
speciesSuccinatimonas_hippei-0.020.3830.454
speciesClostridium_clostridioforme0.020.3960.468
speciesClostridium_hathewayi-0.0190.4020.474
speciesBacteroides_fragilis0.0190.4080.48
orderAeromonadales-0.0190.4160.488
orderPasteurellales0.0180.4440.519
familyPasteurellaceae0.0180.4440.519
genusSiphoviridae_noname0.0170.460.536
speciesPrevotella_bivia0.0170.4610.536
familySuccinivibrionaceae-0.0170.4670.542
speciesClostridium_leptum-0.0170.470.544
speciesClostridium_asparagiforme-0.0170.4730.546
genusPeptoniphilus-0.0160.4790.551
speciesOdoribacter_unclassified0.0160.480.551
genusHoldemania0.0160.4950.567
familyViruses_noname0.0150.5190.59
genusViruses_noname0.0150.5190.59
speciesLactobacillus_reuteri0.0150.5190.59
speciesClostridium_sp_ATCC_BAA_4420.0150.5250.596
speciesLactobacillus_amylovorus-0.0150.5290.599
speciesMitsuokella_multacida0.0140.5370.606
genusPorphyromonas-0.0140.5390.607
familyPodoviridae0.0140.5440.611
orderCaudovirales-0.0140.5460.612
speciesClostridiales_bacterium_1_7_47FAA-0.0130.5610.627
speciesParabacteroides_sp_20_3-0.0130.5710.637
speciesBacteroides_fluxus0.0130.5820.648
speciesRoseburia_unclassified0.0130.5860.651
speciesErysipelotrichaceae_bacterium_3_1_530.0120.5920.656
phylumSynergistetes0.0110.6270.688
classSynergistia0.0110.6270.688
orderSynergistales0.0110.6270.688
familySynergistaceae0.0110.6270.688
phylumViruses_noname0.0110.6320.691
classViruses_noname0.0110.6320.691
speciesAcidaminococcus_fermentans0.0110.650.709
speciesDialister_succinatiphilus0.010.6550.712
speciesMegamonas_hypermegale0.010.6560.712
speciesAcidaminococcus_unclassified0.010.6590.713
speciesPorphyromonas_uenonis-0.010.6670.72
speciesLactococcus_phage_jm20.010.6770.729
speciesPorphyromonas_asaccharolytica-0.010.6780.729
genusPhascolarctobacterium-0.0090.6920.741
speciesPhascolarctobacterium_succinatutens-0.0090.6920.741
speciesKlebsiella_phage_KP36-0.0090.7040.752
speciesClostridium_sp_KLE_1755-0.0080.7330.781
speciesHoldemania_filiformis0.0060.790.839
speciesBifidobacterium_breve0.0060.7920.839
speciesMegamonas_funiformis-0.0060.7930.839
speciesSutterella_parvirubra-0.0050.8240.87
speciesCollinsella_tanakaei-0.0050.8350.879
speciesCoprobacillus_sp_D6-0.0050.8360.879
familyBurkholderiales_noname-0.0050.8450.886
speciesBifidobacterium_angulatum-0.0040.8580.898
speciesCoprococcus_sp_ART55_10.0040.8630.901
speciesAlistipes_unclassified-0.0040.8650.901
speciesClostridium_citroniae0.0040.880.915
speciesLactococcus_phage_P680-0.0030.8840.915
speciesBacteroides_sp_2_1_22-0.0030.8850.915
speciesBacteroides_plebeius0.0030.8860.915
speciesEubacterium_biforme0.0030.8970.924
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0020.9270.953
speciesBacteroides_sp_1_1_6-0.0020.930.954
speciesClostridium_symbiosum0.0020.9330.955
genusBurkholderiales_noname-0.0020.9370.955
speciesBurkholderiales_bacterium_1_1_47-0.0020.9370.955
genusPantoea-0.0020.9480.962
speciesPantoea_unclassified-0.0020.9480.962
speciesBacteroides_massiliensis-0.0010.950.962
genusTunalikevirus0.0010.9580.968
speciesLactococcus_phage_bIL67-0.0010.9720.977
genusFlavonifractor-0.0010.9730.977
speciesFlavonifractor_plautii-0.0010.9730.977
speciesRuminococcus_lactaris0.00.9850.987
speciesBacteroides_coprocola0.00.9960.996
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
ObesityDenmark1691230.01353288576810.01081292647280.008602595979422397.36247
Colorectal cancerAustria64350.03207565180510.02080453532530.126993991491598720.2565
Ulcerative colitisSpain78660.01987531218430.01264049784390.141867965455879829.0229
Rheumatoid arthritisChina127980.02654274009080.02871864161690.194944402212877429.2593
Type II diabetesDenmark752770.01309578651940.01238232662390.4328538857491893662.071
Liver cirrhosisChina1201140.016194533510.01505670740890.5963538528072547985.589
Crohns diseaseSpain17660.01821515401190.01264049784390.6155773853492512883.5511
Type II diabetesChina1831850.01841582189630.0164039180920.9321699665212909796.1598
Type II diabetesSweden53920.01890144151780.01880215597670.9678087039372863796.976
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382