MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-09 08:07:26 PST
Job id & description: 2167, olsF
Query type: protein
Count queries & homologs: 1, 52
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA658258CompleteunknownCOG3176ProteobacteriaProvidencia98.698.0978.41
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA688114CompleteunknownCOG3176ProteobacteriaEnterobacter98.699.8261.95
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA664482CompleteunknownCOG3176ProteobacteriaEnterobacter99.4899.8361.43
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA688144CompleteunknownCOG3176ProteobacteriaEnterobacter98.699.8261.77
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA682574CompleteunknownCOG3176ProteobacteriaEnterobacter98.699.4761.59
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA669048CompleteunknownCOG3176ProteobacteriaKlebsiella98.698.7861.77
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA668884CompleteunknownCOG3176ProteobacteriaKlebsiella98.698.7862.12
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA664502CompleteunknownCOG3176ProteobacteriaEnterobacter98.698.4361.24
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA687998CompleteunknownCOG3176ProteobacteriaEnterobacter98.699.8262.65
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA671159CompleteunknownCOG3176ProteobacteriaEnterobacter99.48100.060.38
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA669113CompleteunknownCOG3176ProteobacteriaKlebsiella98.698.7861.77
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA664663CompleteunknownCOG3176ProteobacteriaEnterobacter98.698.4360.71
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA673936CompleteunknownCOG3176ProteobacteriaCitrobacter98.698.9560.71
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA1559584Lack 5'-endunknownCOG3176ProteobacteriaKlebsiella70.1698.2965.42
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA1029544Lack 3'-endunknownCOG3176unknownunknown83.7799.5950.62
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA686120CompleteunknownCOG3176ProteobacteriaKlebsiella97.5698.9434.88
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA685980CompleteunknownCOG3176ProteobacteriaKlebsiella97.5698.9434.52
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA1265302CompleteunknownCOG3176Proteobacteriaunknown77.6699.5536.63
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA592054CompleteunknownCOG3176unknownunknown87.4386.1234.67
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA593672CompleteunknownCOG3176unknownunknown87.4386.1234.67
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA592436CompleteunknownCOG3176unknownunknown87.4386.1234.55
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA589414CompleteunknownCOG3176unknownunknown87.4386.1433.59
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA527894CompleteunknownCOG3176unknownunknown91.889.4231.21
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA588531CompleteunknownCOG3176unknownunknown87.4386.1432.82
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA579407CompleteunknownCOG3176unknownunknown88.8387.2333.09
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA596331CompleteunknownCOG3176unknownunknown87.4386.132.89
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA580991CompleteunknownCOG3176Bacteroidetesunknown87.4385.7133.71
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA525390CompleteunknownCOG3176unknownunknown90.9287.6832.08
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA580538CompleteunknownCOG3176BacteroidetesOdoribacter87.4385.7133.52
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA478878CompleteunknownCOG3176unknownunknown93.0287.3331.05
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA528000CompleteunknownCOG3176unknownunknown90.9287.8232.61
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA527493CompleteunknownCOG3176unknownunknown90.5887.532.43
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA592555CompleteK00655COG3176unknownunknown90.0587.1230.41
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA554030CompleteK00655COG3176VerrucomicrobiaAkkermansia88.6685.9731.73
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA552442CompleteK00655COG3176VerrucomicrobiaAkkermansia88.6685.9731.78
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA553287CompleteK00655COG3176VerrucomicrobiaAkkermansia88.6685.9732.1
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA585974CompleteunknownCOG3176unknownunknown93.7290.6730.14
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA552897CompleteK00655COG3176VerrucomicrobiaAkkermansia88.6685.9731.92
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA552801CompleteK00655COG3176Verrucomicrobiaunknown88.6685.9731.73
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA592552CompleteunknownCOG3176unknownunknown90.487.4631.18
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA552222CompleteK00655COG3176VerrucomicrobiaAkkermansia88.6685.9731.73
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA617569CompleteunknownCOG3176unknownunknown87.0986.4232.19
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA558088CompleteunknownCOG3176unknownunknown89.0186.7432.0
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA593509CompleteunknownCOG3176unknownunknown91.9788.9631.28
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA546790CompleteK00655COG3176unknownunknown90.2391.7230.38
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA609034CompleteunknownCOG3176unknownunknown89.788.3430.61
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA530585CompleteunknownCOG3176unknownunknown87.2681.732.38
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA599927Lack 3'-endunknownCOG3176unknownunknown87.0986.0730.32
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA585946CompleteunknownCOG3176unknownunknown91.9789.030.82
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA621200CompleteunknownCOG3176unknownunknown86.7486.2232.26
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA618125CompleteunknownCOG3176unknownunknown87.7887.2731.61
tr|A0A0N7JPR0|A0A0N7JPR0_SERMA1079079Lack 5'-endunknownCOG3176unknownunknown74.1794.7132.75
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumVerrucomicrobia0.4782.61e-1072.05e-105
classVerrucomicrobiae0.4782.61e-1072.05e-105
orderVerrucomicrobiales0.4782.61e-1072.05e-105
familyVerrucomicrobiaceae0.4782.61e-1072.05e-105
genusAkkermansia0.4782.61e-1072.05e-105
speciesAkkermansia_muciniphila0.4782.61e-1072.05e-105
genusOdoribacter0.3521.42e-559.57e-54
speciesOdoribacter_splanchnicus0.3383.66e-512.16e-49
familyRikenellaceae0.3277.08e-483.34e-46
genusAlistipes0.3277.08e-483.34e-46
speciesKlebsiella_pneumoniae0.2862.02e-368.67e-35
genusKlebsiella0.2595.5e-302.16e-28
familyPorphyromonadaceae0.2553.89e-291.41e-27
speciesAlistipes_indistinctus0.2539.4e-293.17e-27
speciesAlistipes_shahii0.2441.05e-263.3e-25
speciesAlistipes_onderdonkii0.2431.83e-265.4e-25
speciesAlistipes_putredinis0.2422.54e-267.05e-25
familyBacteroidales_noname0.2315.66e-241.34e-22
genusBacteroidales_noname0.2315.66e-241.34e-22
speciesBacteroidales_bacterium_ph80.2315.66e-241.34e-22
speciesAlistipes_finegoldii0.2263.71e-238.34e-22
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2265.4e-231.16e-21
orderEnterobacteriales0.2213.33e-226.55e-21
familyEnterobacteriaceae0.2213.33e-226.55e-21
speciesAlistipes_senegalensis0.2172.16e-214.08e-20
speciesAlistipes_sp_AP110.214.81e-208.73e-19
genusAnaerotruncus0.2071.29e-192.26e-18
classDeltaproteobacteria0.2053.88e-196.1e-18
orderDesulfovibrionales0.2053.88e-196.1e-18
familyDesulfovibrionaceae0.2053.88e-196.1e-18
genusOxalobacter0.2029.5e-191.4e-17
speciesOxalobacter_formigenes0.2029.5e-191.4e-17
familyOxalobacteraceae0.1993.86e-185.52e-17
genusBarnesiella0.1943.09e-174.17e-16
speciesBarnesiella_intestinihominis0.1943.09e-174.17e-16
genusButyricimonas0.1882.36e-163.01e-15
speciesButyricimonas_synergistica0.1882.36e-163.01e-15
phylumProteobacteria0.1873.58e-164.45e-15
speciesAnaerotruncus_colihominis0.1849.29e-161.12e-14
genusBilophila0.1831.45e-151.71e-14
speciesOscillibacter_unclassified0.1821.89e-152.18e-14
speciesBilophila_unclassified0.1822.39e-152.69e-14
familyOscillospiraceae0.1789.65e-151.04e-13
genusOscillibacter0.1789.65e-151.04e-13
genusEnterobacter0.1771.24e-141.3e-13
speciesEnterobacter_cloacae0.1761.54e-141.58e-13
speciesSubdoligranulum_sp_4_3_54A2FAA0.1691.88e-131.89e-12
genusDesulfovibrio0.1682.8e-132.75e-12
speciesBilophila_wadsworthia0.1673.12e-133.01e-12
speciesBacteroides_caccae0.1612.48e-122.34e-11
speciesClostridium_hathewayi0.163.79e-123.51e-11
speciesEscherichia_unclassified0.1586.95e-126.31e-11
speciesSubdoligranulum_unclassified0.1578.07e-127.19e-11
genusSubdoligranulum0.1578.71e-127.61e-11
genusPseudoflavonifractor0.1561.09e-119.19e-11
speciesPseudoflavonifractor_capillosus0.1561.09e-119.19e-11
speciesParabacteroides_goldsteinii0.1551.59e-111.32e-10
classGammaproteobacteria0.1533.34e-112.72e-10
genusPantoea0.1523.55e-112.79e-10
speciesPantoea_unclassified0.1523.55e-112.79e-10
speciesBacteroides_cellulosilyticus0.1481.31e-101.01e-09
genusParabacteroides0.1471.49e-101.13e-09
familyLachnospiraceae-0.1471.59e-101.19e-09
speciesAnaerotruncus_unclassified0.1443.5e-102.58e-09
genusEscherichia0.1443.62e-102.63e-09
speciesDesulfovibrio_desulfuricans0.1444.06e-102.9e-09
speciesClostridium_leptum0.1435.32e-103.75e-09
speciesParabacteroides_merdae0.1418.12e-105.64e-09
phylumFirmicutes-0.1363.75e-092.57e-08
genusGordonibacter0.1363.94e-092.62e-08
speciesGordonibacter_pamelaeae0.1363.94e-092.62e-08
speciesLachnospiraceae_bacterium_7_1_58FAA0.1346e-093.93e-08
speciesClostridium_asparagiforme0.1337.79e-095.04e-08
speciesKlebsiella_oxytoca0.1311.4e-088.93e-08
speciesBacteroides_nordii0.131.51e-089.5e-08
speciesEscherichia_coli0.1292.43e-081.51e-07
genusRoseburia-0.1273.83e-082.35e-07
speciesKlebsiella_sp_MS_92_30.1211.55e-079.38e-07
genusCoprobacter0.1192.37e-071.4e-06
speciesCoprobacter_fastidiosus0.1192.37e-071.4e-06
genusHoldemania0.1192.49e-071.45e-06
speciesBacteroides_intestinalis0.1183e-071.73e-06
speciesEnterobacter_aerogenes0.1183.19e-071.81e-06
speciesVeillonella_unclassified-0.1156.48e-073.64e-06
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1146.93e-073.85e-06
speciesOdoribacter_laneus0.1139.47e-075.2e-06
genusFaecalibacterium-0.1139.72e-075.21e-06
speciesFaecalibacterium_prausnitzii-0.1139.72e-075.21e-06
genusVeillonella-0.1121.22e-066.47e-06
speciesStreptococcus_salivarius-0.1121.24e-066.5e-06
speciesRuminococcus_gnavus-0.1111.53e-067.94e-06
classMethanobacteria0.1092.22e-061.11e-05
orderMethanobacteriales0.1092.22e-061.11e-05
familyMethanobacteriaceae0.1092.22e-061.11e-05
genusPorphyromonas0.1092.41e-061.2e-05
speciesHoldemania_filiformis0.1092.55e-061.25e-05
speciesCitrobacter_freundii0.1073.2e-061.56e-05
genusMethanobrevibacter0.1073.73e-061.8e-05
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1073.82e-061.82e-05
speciesParabacteroides_johnsonii0.1064.17e-061.97e-05
phylumEuryarchaeota0.1064.54e-062.12e-05
speciesErysipelotrichaceae_bacterium_21_30.1064.79e-062.22e-05
speciesRoseburia_intestinalis-0.1055.79e-062.65e-05
speciesErysipelotrichaceae_bacterium_6_1_450.1047.29e-063.31e-05
genusCitrobacter0.1021.09e-054.9e-05
familyClostridiales_noname0.11.35e-056.01e-05
classNegativicutes-0.11.49e-056.51e-05
orderSelenomonadales-0.11.49e-056.51e-05
speciesHaemophilus_parainfluenzae-0.11.54e-056.67e-05
genusHaemophilus-0.0991.75e-057.51e-05
genusStreptococcus-0.0982.03e-058.63e-05
orderPasteurellales-0.0972.8e-050.000117
familyPasteurellaceae-0.0972.8e-050.000117
speciesEubacterium_siraeum0.0963.14e-050.00013
speciesClostridium_citroniae0.0963.23e-050.000133
speciesCitrobacter_unclassified0.0963.42e-050.000139
speciesBacteroides_thetaiotaomicron0.0953.87e-050.000156
classBacilli-0.0953.89e-050.000156
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0944.46e-050.000177
speciesAlistipes_sp_HGB50.0935.19e-050.000204
orderLactobacillales-0.0935.76e-050.000225
familyVeillonellaceae-0.0935.88e-050.000227
speciesMethanobrevibacter_smithii0.0926.21e-050.000238
speciesPorphyromonas_uenonis0.0926.27e-050.000239
speciesPorphyromonas_asaccharolytica0.0926.94e-050.000262
genusPeptostreptococcaceae_noname-0.0917.7e-050.000288
speciesClostridium_symbiosum0.099.61e-050.000357
familyClostridiaceae0.090.0001060.000391
speciesVeillonella_parvula-0.0890.0001160.000424
genusClostridium0.0880.0001280.000465
phylumSynergistetes0.0880.0001340.000472
classSynergistia0.0880.0001340.000472
orderSynergistales0.0880.0001340.000472
familySynergistaceae0.0880.0001340.000472
speciesStreptococcus_australis-0.0880.0001350.000472
genusRuminococcaceae_noname0.0880.0001380.000475
speciesRuminococcaceae_bacterium_D160.0880.0001380.000475
speciesRoseburia_inulinivorans-0.0870.0001630.000558
familyStreptococcaceae-0.0870.0001780.000604
speciesVeillonella_atypica-0.0860.0001970.000664
speciesBacteroides_clarus0.0860.0002040.000683
speciesCoprobacillus_sp_29_10.0850.0002510.000834
genusAdlercreutzia0.0840.0002860.000937
speciesAdlercreutzia_equolifaciens0.0840.0002860.000937
speciesParabacteroides_distasonis0.0840.0002930.000954
genusDorea-0.0820.0003580.00116
speciesMethanobrevibacter_unclassified0.0820.0003860.00124
speciesTuricibacter_sanguinis-0.080.0004990.00159
genusTuricibacter-0.080.0005390.00171
speciesLactococcus_garvieae0.0790.0006380.00201
speciesVeillonella_dispar-0.0790.0006540.00204
classClostridia-0.0780.0006870.00212
orderClostridiales-0.0780.0006870.00212
speciesDesulfovibrio_piger0.0780.0007460.00229
familyPeptostreptococcaceae-0.0780.0007680.00234
speciesStreptococcus_sanguinis-0.0780.000780.00236
genusTunalikevirus0.0780.0007930.00238
speciesClostridiales_bacterium_1_7_47FAA0.0770.00080.00239
genusMorganella0.0760.0009340.00276
speciesMorganella_morganii0.0760.0009340.00276
speciesPeptostreptococcaceae_noname_unclassified-0.0760.0009660.00283
speciesStreptococcus_vestibularis-0.0760.0009970.0029
speciesBacteroides_eggerthii0.0750.00120.00347
genusAnaerostipes-0.0740.001460.0042
speciesKlebsiella_phage_KP360.0710.002090.00598
genusFlavonifractor0.0710.002120.00599
speciesFlavonifractor_plautii0.0710.002120.00599
speciesBacteroides_oleiciplenus0.0710.002140.00601
speciesWeissella_confusa0.0710.002240.00621
speciesRuminococcus_lactaris0.0710.002240.00621
genusClostridiales_noname0.0710.002250.00621
genusBlautia-0.070.002470.00678
genusPyramidobacter0.070.002540.00689
speciesPyramidobacter_piscolens0.070.002540.00689
speciesRuminococcus_sp_5_1_39BFAA-0.070.002570.00693
speciesTuricibacter_unclassified-0.0690.002740.00735
speciesBacteroides_salyersiae0.0680.00330.0088
speciesBacteroides_uniformis0.0670.003610.00957
speciesOscillibacter_sp_KLE_17450.0670.003890.0103
familyMicrococcaceae-0.0670.003970.0104
genusRothia-0.0660.004120.0107
speciesDorea_formicigenerans-0.0650.00470.0122
genusBifidobacterium-0.0650.0050.0129
speciesCoprobacillus_sp_D60.0640.005290.0136
speciesStreptococcus_parasanguinis-0.0640.005390.0138
speciesRothia_mucilaginosa-0.0640.005630.0143
orderBifidobacteriales-0.0640.005960.015
familyBifidobacteriaceae-0.0640.005960.015
speciesClostridium_bartlettii-0.0630.006230.0156
genusActinobacillus-0.0610.007920.0196
speciesActinobacillus_unclassified-0.0610.007920.0196
speciesClostridium_sp_ATCC_BAA_4420.0610.008120.02
familyLactobacillaceae-0.0610.008240.0202
speciesEubacterium_eligens0.0610.008440.0205
classEpsilonproteobacteria0.060.009510.0229
orderCampylobacterales0.060.009510.0229
speciesAnaerostipes_hadrus-0.060.009960.0239
familyCampylobacteraceae0.0590.01060.0253
genusAcidaminococcaceae_unclassified0.0590.01090.0259
speciesRoseburia_hominis0.0590.0110.026
genusLactococcus0.0590.01120.0263
speciesLachnospiraceae_bacterium_3_1_46FAA0.0590.01130.0263
speciesDorea_longicatena-0.0590.01130.0263
speciesCoprobacillus_unclassified-0.0580.01160.0268
genusPeptoniphilus0.0580.01220.028
speciesBacteroides_finegoldii0.0580.01220.028
phylumActinobacteria-0.0570.01330.0302
classActinobacteria-0.0570.01330.0302
speciesAcidaminococcus_fermentans0.0570.01340.0303
genusCampylobacter0.0570.01350.0303
speciesLactobacillus_rhamnosus-0.0570.01360.0304
familyPodoviridae0.0570.01370.0305
speciesHoldemania_unclassified0.0560.01590.0352
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0560.01640.0362
speciesClostridium_bolteae0.0550.0170.0373
speciesStreptococcus_mutans-0.0550.01730.0378
genusBurkholderiales_noname0.0550.01790.0388
speciesBurkholderiales_bacterium_1_1_470.0550.01790.0388
speciesFusobacterium_varium-0.0540.01880.0405
speciesLactobacillus_acidophilus-0.0540.01940.0416
familyBurkholderiales_noname0.0540.01950.0416
genusParasutterella0.0540.01980.0419
speciesParasutterella_excrementihominis0.0540.01980.0419
speciesStreptococcus_lutetiensis-0.0540.02060.0434
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0530.02280.0478
genusLambdalikevirus0.0520.02430.0508
genusLactobacillus-0.0520.02470.0514
speciesEubacterium_dolichum-0.0520.02570.0532
orderBacillales-0.0510.02850.0585
speciesProteus_mirabilis0.0510.02850.0585
speciesPeptostreptococcus_anaerobius0.0510.02880.0588
genusProteus0.050.03070.0622
speciesEubacterium_sp_3_1_310.050.03070.0622
speciesKlebsiella_unclassified0.0490.03370.068
speciesBacteroides_plebeius0.0490.0340.0683
speciesClostridium_sp_L2_500.0490.03420.0684
phylumViruses_noname0.0490.03490.0692
classViruses_noname0.0490.03490.0692
speciesBacteroides_massiliensis0.0490.0360.0711
speciesStreptococcus_mitis_oralis_pneumoniae-0.0480.03620.0712
speciesBifidobacterium_longum-0.0480.03660.0717
orderCaudovirales0.0480.0370.0722
speciesWeissella_cibaria0.0480.03730.0725
speciesLactococcus_lactis0.0480.03990.0772
speciesRuminococcus_champanellensis0.0470.04060.0782
speciesStreptococcus_pasteurianus-0.0470.04340.0833
genusWeissella0.0460.0450.086
genusSolobacterium-0.0460.04640.088
speciesSolobacterium_moorei-0.0460.04640.088
genusClostridiaceae_noname0.0450.05010.0942
speciesClostridiaceae_bacterium_JC1180.0450.05010.0942
speciesCampylobacter_concisus-0.0440.05440.102
speciesStreptococcus_gordonii-0.0440.05510.103
familyMyoviridae0.0440.05590.104
genusButyricicoccus-0.0440.05650.104
speciesButyricicoccus_pullicaecorum-0.0440.05650.104
speciesRuminococcus_sp_JC304-0.0440.05840.107
speciesBacteroides_coprocola0.0440.05990.11
speciesPrevotella_stercorea-0.0430.06030.11
speciesParaprevotella_xylaniphila0.0430.06170.112
speciesCoprococcus_comes-0.0430.06410.116
speciesEubacterium_cylindroides0.0420.070.126
speciesRuminococcus_callidus0.0420.07060.127
speciesAlistipes_unclassified-0.0420.07090.127
genusPhascolarctobacterium-0.0410.07550.134
speciesPhascolarctobacterium_succinatutens-0.0410.07550.134
speciesHaemophilus_sputorum-0.0410.07560.134
speciesBacteroides_xylanisolvens0.0410.07640.135
speciesEubacterium_rectale-0.0410.07770.136
speciesMitsuokella_multacida-0.0410.07860.137
speciesBacteroides_stercoris0.040.08510.148
speciesEubacterium_limosum0.0390.09210.16
speciesBacteroides_sp_4_3_47FAA0.0380.0980.169
speciesBacteroides_coprophilus0.0380.09870.17
speciesClostridium_nexile-0.0380.0990.17
genusCoprococcus-0.0380.1020.174
speciesParabacteroides_sp_20_30.0380.1020.174
familyBacillales_noname-0.0380.1030.174
genusGemella-0.0380.1030.174
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0370.1120.189
genusAcidaminococcus0.0360.1160.195
speciesLactobacillus_plantarum0.0360.1180.196
speciesClostridium_sp_KLE_17550.0360.1180.196
speciesBifidobacterium_animalis-0.0360.1180.196
speciesCollinsella_tanakaei0.0360.120.199
orderPseudomonadales0.0350.1270.21
speciesLactobacillus_vaginalis0.0350.1280.21
speciesEubacterium_ventriosum0.0350.1280.21
speciesOdoribacter_unclassified-0.0350.130.212
speciesLactobacillus_delbrueckii-0.0350.1330.216
speciesParaprevotella_unclassified0.0350.1330.216
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0340.1410.228
speciesLachnospiraceae_bacterium_1_1_57FAA0.0340.1440.232
speciesParaprevotella_clara0.0330.1480.238
orderActinomycetales-0.0330.1510.242
genusParaprevotella0.0330.1530.243
speciesRoseburia_unclassified0.0330.1530.243
speciesAnaerostipes_unclassified-0.0330.1570.249
speciesSlackia_piriformis-0.0320.1610.254
genusMyoviridae_noname0.0320.1630.256
speciesLactobacillus_ruminis-0.0320.1640.257
speciesBifidobacterium_adolescentis-0.0310.1760.275
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0310.1790.279
speciesBacteroides_sp_3_1_190.0310.180.279
speciesEnterococcus_faecalis0.030.1930.299
genusActinomyces-0.030.1950.301
speciesLachnospiraceae_bacterium_5_1_57FAA0.030.1960.301
speciesClostridium_clostridioforme0.0290.2040.313
genusSutterellaceae_unclassified0.0290.2050.313
speciesDorea_unclassified0.0290.2120.323
genusCatenibacterium-0.0290.2170.328
speciesCatenibacterium_mitsuokai-0.0290.2170.328
speciesBlautia_producta-0.0280.2190.33
speciesLactobacillus_mucosae-0.0280.2210.332
speciesBacteroides_fragilis0.0280.2220.333
speciesLactobacillus_casei_paracasei0.0280.2280.341
speciesBifidobacterium_breve-0.0270.2510.374
speciesClostridium_ramosum-0.0260.2530.376
familyClostridiales_Family_XI_Incertae_Sedis0.0260.2540.376
speciesStreptococcus_thermophilus-0.0260.2560.378
speciesLeuconostoc_lactis0.0250.2850.419
speciesGemella_morbillorum0.0250.2880.422
familyEubacteriaceae-0.0240.2930.427
genusEubacterium-0.0240.2930.427
genusEnterococcus0.0240.2970.43
speciesBacteroides_sp_1_1_60.0240.2970.43
genusOlsenella-0.0240.3070.443
genusErysipelotrichaceae_noname0.0240.3080.443
genusSlackia-0.0230.320.459
speciesStreptococcus_anginosus-0.0230.3220.461
speciesHaemophilus_paraphrohaemolyticus-0.0230.330.469
genusAggregatibacter-0.0220.3310.469
speciesLactococcus_phage_936_sensu_lato-0.0220.3310.469
speciesPrevotella_bivia0.0220.3340.472
familyEnterococcaceae0.0220.3360.472
speciesStreptococcus_infantarius0.0220.3360.472
speciesLactococcus_phage_jm2-0.0220.3440.482
speciesErysipelotrichaceae_bacterium_2_2_44A0.0220.3470.485
familyActinomycetaceae-0.0220.350.487
genusParvimonas0.0210.3560.494
speciesLactobacillus_crispatus0.0210.3570.494
speciesParvimonas_unclassified0.0210.3590.495
genusLeuconostoc-0.0210.360.495
genusLachnospiraceae_noname-0.0210.3740.513
genusStaphylococcus-0.0210.3750.513
familySiphoviridae0.020.3810.518
speciesFusobacterium_nucleatum0.020.3820.518
speciesOscillibacter_sp_KLE_17280.020.3820.518
speciesCollinsella_intestinalis-0.020.3910.529
speciesLactobacillus_fermentum0.0190.40.539
speciesCoprococcus_eutactus-0.0190.4010.539
speciesCoprococcus_sp_ART55_1-0.0190.4040.542
familyStaphylococcaceae-0.0190.4110.549
speciesHoldemania_sp_AP20.0190.4120.549
speciesBlautia_hydrogenotrophica0.0190.4170.554
genusSiphoviridae_noname-0.0190.4190.554
speciesBifidobacterium_catenulatum-0.0190.420.554
speciesButyrivibrio_crossotus0.0190.420.554
speciesLactobacillus_salivarius0.0180.430.564
speciesAcidaminococcus_unclassified0.0180.430.564
speciesBifidobacterium_dentium0.0180.4350.569
speciesMitsuokella_unclassified0.0180.4390.572
speciesRuminococcus_bromii0.0180.4430.576
speciesButyrivibrio_unclassified-0.0170.4530.586
speciesClostridium_spiroforme0.0170.4530.586
speciesSutterella_parvirubra-0.0170.4570.589
speciesFusobacterium_ulcerans-0.0170.4720.603
phylumFusobacteria-0.0170.4730.603
classFusobacteriia-0.0170.4730.603
orderFusobacteriales-0.0170.4730.603
speciesOlsenella_unclassified-0.0160.4770.607
genusMitsuokella0.0160.4850.615
speciesLactobacillus_sanfranciscensis-0.0160.4860.615
genusCoprobacillus-0.0160.4950.624
familyLeuconostocaceae0.0160.4960.624
familySuccinivibrionaceae-0.0160.4970.624
speciesDialister_succinatiphilus-0.0150.5070.635
speciesBacteroides_fluxus-0.0150.510.637
orderCoriobacteriales-0.0150.5180.643
familyCoriobacteriaceae-0.0150.5180.643
familyFusobacteriaceae-0.0150.5230.648
speciesBacteroides_salanitronis0.0150.5280.652
genusSuccinatimonas-0.0140.5320.654
speciesSuccinatimonas_hippei-0.0140.5320.654
speciesMegamonas_rupellensis-0.0140.5460.667
phylumBacteroidetes0.0140.5480.667
classBacteroidia0.0140.5480.667
orderBacteroidales0.0140.5480.667
speciesClostridium_perfringens0.0130.560.678
genusSutterella-0.0130.5610.678
speciesEggerthella_lenta-0.0130.5620.678
speciesBacteroides_vulgatus-0.0130.5810.7
speciesEnterobacteria_phage_HK5440.0130.5870.705
classBetaproteobacteria0.0120.5930.709
speciesBacteroides_sp_2_1_22-0.0120.5930.709
orderBurkholderiales0.0120.5980.713
classErysipelotrichia0.0120.6090.718
orderErysipelotrichales0.0120.6090.718
familyErysipelotrichaceae0.0120.6090.718
genusRuminococcus-0.0120.6110.718
familyViruses_noname0.0120.6120.718
genusViruses_noname0.0120.6120.718
speciesPropionibacterium_freudenreichii-0.0120.6150.718
speciesStreptococcus_phage_Sfi210.0120.6160.718
speciesEubacterium_biforme0.0120.6160.718
familyAcidaminococcaceae0.0110.6230.724
genusFusobacterium-0.0110.6310.732
speciesErysipelotrichaceae_bacterium_3_1_53-0.0110.6340.733
speciesSutterella_wadsworthensis-0.0110.6390.737
familyPropionibacteriaceae-0.0110.6450.743
speciesParabacteroides_unclassified-0.010.6570.754
genusMegamonas0.010.6590.754
speciesMegamonas_unclassified0.010.660.754
orderAeromonadales0.010.6630.756
genusMethanosphaera0.010.6690.759
speciesMethanosphaera_stadtmanae0.010.6690.759
genusPeptostreptococcus-0.010.6710.76
speciesCoprococcus_catus0.0090.6880.777
speciesRuminococcus_torques-0.0080.7150.805
familyBacteroidaceae0.0080.7250.813
genusBacteroides0.0080.7250.813
genusCoriobacteriaceae_noname0.0080.7290.813
speciesLactobacillus_gasseri-0.0080.7290.813
speciesEubacterium_hallii-0.0080.730.813
speciesMegasphaera_elsdenii0.0080.7320.813
familyPrevotellaceae0.0080.7340.813
speciesLactococcus_phage_bIL67-0.0080.7450.821
speciesCoriobacteriaceae_bacterium_phI0.0080.7450.821
speciesPeptostreptococcus_stomatis-0.0070.7490.821
speciesCollinsella_unclassified0.0070.750.821
speciesAcidaminococcus_intestini0.0070.750.821
genusMegasphaera-0.0070.7530.823
speciesEubacterium_ramulus-0.0070.7590.827
speciesLactobacillus_amylovorus0.0070.760.827
familyRuminococcaceae-0.0070.7620.827
speciesCollinsella_aerofaciens0.0070.7640.827
speciesBifidobacterium_pseudocatenulatum-0.0070.7690.831
speciesBacteroides_barnesiae-0.0060.7850.846
speciesBifidobacterium_bifidum0.0060.7970.857
genusPropionibacterium-0.0050.8170.876
genusCollinsella-0.0050.8250.883
speciesMegasphaera_micronuciformis-0.0050.8370.894
genusPrevotella-0.0050.8440.897
speciesMegasphaera_unclassified0.0050.8460.897
speciesBacteroides_dorei-0.0040.8460.897
speciesDialister_invisus0.0040.8680.918
genusEggerthella-0.0040.8690.918
speciesPrevotella_buccae0.0040.8730.918
speciesPrevotella_copri0.0040.8730.918
speciesAggregatibacter_segnis-0.0040.8790.922
familySutterellaceae0.0030.8940.936
speciesEnterococcus_faecium0.0030.9030.943
speciesRuminococcus_obeum-0.0030.9060.944
speciesMegamonas_hypermegale0.0020.9170.95
speciesBacteroides_faecis0.0020.9170.95
speciesLactobacillus_oris-0.0020.9180.95
orderViruses_noname-0.0020.9240.954
speciesEggerthella_sp_1_3_56FAA0.0020.9270.955
genusC2likevirus0.0020.9330.959
speciesFusobacterium_mortiferum0.0020.9390.963
speciesBifidobacterium_angulatum0.0020.9460.969
speciesLactococcus_phage_phi7-0.0010.9520.973
genusButyrivibrio0.0010.9560.975
genusDialister0.0010.9740.991
speciesParabacteroides_sp_D130.00.9871.0
speciesLactococcus_phage_P6800.00.991.0
speciesC2likevirus_unclassified0.00.9911.0
speciesEggerthella_unclassified0.00.9921.0
speciesLactobacillus_reuteri0.00.9961.0
speciesMegamonas_funiformis0.00.9981.0
speciesBacteroides_ovatus0.00.9991.0
speciesBacteroides_pectinophilus0.01.01.0
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Ulcerative colitisSpain78660.01058020715640.01539006394480.001629666698467402.44112
ObesityDenmark1691230.01130616217160.01937348780340.0069176111738520586.76729
Type II diabetesDenmark752770.02277749029480.01301736288530.0175108022467506616.606
Type II diabetesChina1831850.02653234881910.01924999685610.0450549208511670122.1455
Liver cirrhosisChina1201140.04976449825810.01352147643920.1534747574271804360.61
Crohns diseaseSpain17660.06301574401290.01539006394480.227289440021750858.2145
Colorectal cancerAustria64350.03155627107220.02487974673040.5805350021512010968.0369
Rheumatoid arthritisChina127980.03090419355280.02491091890340.587687823771956665.2483
Type II diabetesSweden53920.02137231041290.01518269884790.7775622098242370380.2675
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382