MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-09 21:47:31 PST
Job id & description: 2168, BV_choA
Query type: dna
Count queries & homologs: 1, 4
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
BVulgatus_ChoA2174446Lack 5'-endunknownCOG3176BacteroidetesBacteroides100.093.799.8
BVulgatus_ChoA2452804CompleteunknownCOG3176BacteroidetesBacteroides100.0100.091.85
BVulgatus_ChoA2417790CompleteunknownCOG3176BacteroidetesBacteroides93.5893.0175.81
BVulgatus_ChoA2266275Lack 5'-endunknownCOG3176BacteroidetesBacteroides89.1985.5376.08
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBacteroidaceae0.7770.00.0
genusBacteroides0.7770.00.0
phylumBacteroidetes0.5642.41e-1572.29e-155
classBacteroidia0.5642.43e-1572.29e-155
orderBacteroidales0.5642.43e-1572.29e-155
speciesBacteroides_vulgatus0.5518e-1496.29e-147
phylumFirmicutes-0.4811.18e-1087.96e-107
speciesBacteroides_ovatus0.4613.85e-992.27e-97
genusParabacteroides0.454.3e-942.26e-92
orderCoriobacteriales-0.4471.57e-926.74e-91
familyCoriobacteriaceae-0.4471.57e-926.74e-91
speciesCoprococcus_catus-0.4459.66e-923.8e-90
genusDorea-0.4444.91e-911.78e-89
speciesBacteroides_thetaiotaomicron0.4422.33e-907.86e-89
genusCoprococcus-0.4325e-861.57e-84
classClostridia-0.4321.04e-852.89e-84
orderClostridiales-0.4321.04e-852.89e-84
speciesDorea_longicatena-0.4311.81e-854.75e-84
speciesRuminococcus_obeum-0.421.12e-802.78e-79
speciesCollinsella_aerofaciens-0.4184.84e-801.14e-78
familyRuminococcaceae-0.416.53e-771.47e-75
genusCollinsella-0.4089.67e-762.07e-74
phylumActinobacteria-0.4014.38e-738.61e-72
classActinobacteria-0.4014.38e-738.61e-72
speciesBacteroides_fragilis0.3928.01e-701.51e-68
speciesCoprococcus_comes-0.3769.54e-641.73e-62
familyPorphyromonadaceae0.3685.49e-619.6e-60
speciesDorea_formicigenerans-0.3671.53e-602.58e-59
speciesSubdoligranulum_unclassified-0.3619.27e-591.51e-57
genusSubdoligranulum-0.362.7e-584.25e-57
classMethanobacteria-0.363.53e-585.05e-57
orderMethanobacteriales-0.363.53e-585.05e-57
familyMethanobacteriaceae-0.363.53e-585.05e-57
speciesEubacterium_hallii-0.3593.88e-585.39e-57
speciesBifidobacterium_adolescentis-0.3581.27e-571.71e-56
speciesMethanobrevibacter_smithii-0.3564e-575.24e-56
genusMethanobrevibacter-0.3567.4e-579.44e-56
phylumEuryarchaeota-0.3413.49e-524.33e-51
speciesEubacterium_biforme-0.3383.94e-514.77e-50
genusFlavonifractor0.339.4e-491.08e-47
speciesFlavonifractor_plautii0.339.4e-491.08e-47
speciesBacteroides_xylanisolvens0.339.79e-491.1e-47
classErysipelotrichia-0.3244.54e-474.76e-46
orderErysipelotrichales-0.3244.54e-474.76e-46
familyErysipelotrichaceae-0.3244.54e-474.76e-46
speciesBacteroides_uniformis0.3221.79e-461.84e-45
speciesClostridium_bolteae0.3192.2e-452.21e-44
orderBifidobacteriales-0.3161.43e-441.38e-43
familyBifidobacteriaceae-0.3161.43e-441.38e-43
genusOlsenella-0.3161.68e-441.59e-43
genusBifidobacterium-0.3144.95e-444.58e-43
speciesOlsenella_unclassified-0.3139.46e-448.59e-43
genusRuminococcus-0.314.48e-433.99e-42
genusErysipelotrichaceae_noname-0.3082.01e-421.76e-41
speciesRuminococcus_gnavus0.3065.86e-425.03e-41
speciesEubacterium_siraeum-0.2989.36e-407.89e-39
speciesEubacterium_ramulus-0.2963.1e-392.57e-38
familyLachnospiraceae-0.2893.11e-372.53e-36
speciesClostridiales_bacterium_1_7_47FAA0.2844.74e-363.79e-35
familyFusobacteriaceae0.284.44e-353.49e-34
phylumFusobacteria0.285.33e-353.99e-34
classFusobacteriia0.285.33e-353.99e-34
orderFusobacteriales0.285.33e-353.99e-34
speciesClostridium_symbiosum0.2772.6e-341.92e-33
genusFusobacterium0.2772.77e-342.01e-33
genusAdlercreutzia-0.2725e-333.52e-32
speciesAdlercreutzia_equolifaciens-0.2725e-333.52e-32
speciesClostridium_citroniae0.2611.94e-301.35e-29
familyActinomycetaceae-0.2571.34e-299.17e-29
speciesRuminococcus_sp_5_1_39BFAA-0.2562.31e-291.56e-28
genusActinomyces-0.2553.33e-292.21e-28
speciesMethanobrevibacter_unclassified-0.256.07e-283.98e-27
speciesStreptococcus_thermophilus-0.2472.37e-271.53e-26
phylumVerrucomicrobia-0.2463.62e-272.16e-26
classVerrucomicrobiae-0.2463.62e-272.16e-26
orderVerrucomicrobiales-0.2463.62e-272.16e-26
familyVerrucomicrobiaceae-0.2463.62e-272.16e-26
genusAkkermansia-0.2463.62e-272.16e-26
speciesAkkermansia_muciniphila-0.2463.62e-272.16e-26
orderLactobacillales-0.2447.6e-274.48e-26
genusCatenibacterium-0.2431.25e-267.2e-26
speciesCatenibacterium_mitsuokai-0.2431.25e-267.2e-26
classBacilli-0.2413.99e-262.27e-25
speciesAnaerostipes_hadrus-0.246.21e-263.49e-25
orderActinomycetales-0.2382.09e-251.16e-24
speciesBifidobacterium_longum-0.2372.81e-251.54e-24
familyEubacteriaceae-0.2341.25e-246.78e-24
genusEubacterium-0.2341.42e-247.62e-24
speciesFusobacterium_ulcerans0.2331.91e-241.01e-23
familyClostridiales_noname0.236.29e-243.3e-23
speciesBacteroides_stercoris0.2281.85e-239.6e-23
speciesBacteroides_dorei0.2272.91e-231.49e-22
classBetaproteobacteria0.2249.05e-234.59e-22
speciesClostridium_hathewayi0.2222.33e-221.17e-21
orderBurkholderiales0.2214.52e-222.25e-21
speciesClostridium_nexile0.2199.77e-224.8e-21
speciesClostridium_leptum-0.2149.22e-214.49e-20
speciesFusobacterium_varium0.213.61e-201.74e-19
familyPrevotellaceae-0.2053.79e-191.81e-18
familyStreptococcaceae-0.2044.62e-192.18e-18
speciesParabacteroides_distasonis0.2044.94e-192.31e-18
speciesCoprococcus_sp_ART55_1-0.2045.6e-192.59e-18
genusButyrivibrio-0.2037.36e-193.37e-18
familyLactobacillaceae-0.2037.47e-193.39e-18
genusLactobacillus-0.2021.02e-184.59e-18
speciesRuminococcus_bromii-0.2021.03e-184.59e-18
speciesAlistipes_senegalensis-0.2021.37e-186.04e-18
phylumProteobacteria0.1977.03e-183.07e-17
speciesAnaerotruncus_unclassified-0.1978.99e-183.89e-17
genusClostridiales_noname0.1961.44e-176.18e-17
genusStreptococcus-0.1951.76e-177.48e-17
familySutterellaceae0.1933.29e-171.39e-16
speciesButyrivibrio_crossotus-0.1924.7e-171.96e-16
speciesEubacterium_rectale-0.1916.91e-172.86e-16
genusMitsuokella-0.1917.64e-173.14e-16
speciesClostridium_clostridioforme0.1918.21e-173.34e-16
genusPhascolarctobacterium-0.191.4e-165.6e-16
speciesPhascolarctobacterium_succinatutens-0.191.4e-165.6e-16
speciesClostridium_sp_L2_50-0.1891.89e-167.5e-16
genusMethanosphaera-0.1891.99e-167.76e-16
speciesMethanosphaera_stadtmanae-0.1891.99e-167.76e-16
speciesMitsuokella_unclassified-0.1882.57e-169.94e-16
familyBurkholderiales_noname0.1873.81e-161.46e-15
speciesPrevotella_copri-0.1864.38e-161.67e-15
genusBurkholderiales_noname0.1864.89e-161.83e-15
speciesBurkholderiales_bacterium_1_1_470.1864.89e-161.83e-15
speciesParaprevotella_unclassified-0.1856.48e-162.41e-15
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1856.68e-162.46e-15
speciesParabacteroides_unclassified0.1849.91e-163.63e-15
genusAnaerostipes-0.1841.02e-153.7e-15
speciesLachnospiraceae_bacterium_6_1_63FAA0.1831.39e-155.01e-15
genusParaprevotella-0.1831.67e-155.97e-15
speciesFusobacterium_mortiferum0.1831.69e-156e-15
speciesStreptococcus_parasanguinis-0.1788.74e-153.08e-14
speciesBilophila_unclassified0.1761.58e-145.52e-14
genusBilophila0.1752.26e-147.84e-14
speciesClostridium_asparagiforme0.1752.88e-149.92e-14
speciesRuminococcus_callidus-0.1744.14e-141.42e-13
speciesBacteroides_nordii0.1728.05e-142.73e-13
speciesPropionibacterium_freudenreichii-0.171.39e-134.69e-13
speciesCoprococcus_eutactus-0.1673.13e-131.05e-12
speciesStreptococcus_salivarius-0.1673.69e-131.23e-12
familyPeptostreptococcaceae-0.1673.8e-131.25e-12
genusParasutterella0.1665.2e-131.69e-12
speciesParasutterella_excrementihominis0.1665.2e-131.69e-12
speciesAnaerostipes_unclassified0.1657.75e-132.51e-12
genusGordonibacter-0.1658.15e-132.6e-12
speciesGordonibacter_pamelaeae-0.1658.15e-132.6e-12
speciesBifidobacterium_animalis-0.1649.04e-132.86e-12
genusPeptostreptococcaceae_noname-0.1631.15e-123.62e-12
speciesStreptococcus_sanguinis-0.1631.35e-124.22e-12
speciesLactobacillus_rhamnosus-0.1631.38e-124.29e-12
speciesMitsuokella_multacida-0.163.37e-121.04e-11
genusLeuconostoc-0.1594.78e-121.47e-11
familyMicrococcaceae-0.1594.84e-121.47e-11
genusRothia-0.1595.08e-121.54e-11
speciesParaprevotella_clara-0.1585.98e-121.8e-11
speciesBifidobacterium_catenulatum-0.1579.59e-122.86e-11
genusHaemophilus0.1561.02e-113.03e-11
speciesHaemophilus_parainfluenzae0.1561.11e-113.27e-11
speciesCoprobacillus_unclassified0.1551.5e-114.37e-11
orderPasteurellales0.1551.51e-114.37e-11
familyPasteurellaceae0.1551.51e-114.37e-11
genusLactococcus-0.1551.55e-114.46e-11
genusPrevotella-0.1551.81e-115.18e-11
speciesErysipelotrichaceae_bacterium_21_3-0.1542.02e-115.74e-11
speciesLachnospiraceae_bacterium_2_1_46FAA0.1524.01e-111.13e-10
speciesRuminococcus_champanellensis-0.1524.21e-111.18e-10
genusPseudoflavonifractor-0.1514.98e-111.38e-10
speciesPseudoflavonifractor_capillosus-0.1514.98e-111.38e-10
genusClostridiaceae_noname0.1515.23e-111.44e-10
speciesClostridiaceae_bacterium_JC1180.1515.23e-111.44e-10
speciesLachnospiraceae_bacterium_2_1_58FAA0.156.29e-111.72e-10
speciesRoseburia_hominis-0.1491.04e-102.82e-10
genusPropionibacterium-0.1481.23e-103.32e-10
speciesRothia_mucilaginosa-0.1481.4e-103.75e-10
speciesBilophila_wadsworthia0.1462.03e-105.41e-10
speciesDialister_succinatiphilus-0.1462.1e-105.57e-10
speciesRuminococcus_torques-0.1444.33e-101.14e-09
speciesLactococcus_phage_P680-0.1434.65e-101.22e-09
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1435.96e-101.55e-09
speciesMegasphaera_micronuciformis0.1436.01e-101.56e-09
genusOxalobacter-0.1426.61e-101.7e-09
speciesOxalobacter_formigenes-0.1426.61e-101.7e-09
genusSolobacterium-0.1426.85e-101.74e-09
speciesSolobacterium_moorei-0.1426.85e-101.74e-09
genusCoprobacillus0.1427.49e-101.89e-09
familyOxalobacteraceae-0.1418.03e-102.02e-09
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1418.7e-102.17e-09
familyOscillospiraceae0.141.29e-093.19e-09
genusOscillibacter0.141.29e-093.19e-09
speciesDesulfovibrio_piger-0.141.33e-093.27e-09
speciesLactobacillus_ruminis-0.1391.56e-093.82e-09
speciesBacteroides_caccae0.1382.09e-095.08e-09
speciesStreptococcus_mutans-0.1372.46e-095.95e-09
speciesVeillonella_dispar0.1363.49e-098.4e-09
speciesPrevotella_buccae0.1363.6e-098.63e-09
speciesRuminococcus_lactaris-0.1355.19e-091.24e-08
genusTuricibacter-0.1355.25e-091.25e-08
speciesLactobacillus_casei_paracasei-0.1337.24e-091.71e-08
speciesParaprevotella_xylaniphila-0.1329.14e-092.15e-08
familyBacillales_noname-0.1321.01e-082.35e-08
genusGemella-0.1321.01e-082.35e-08
speciesBacteroides_pectinophilus-0.1321.12e-082.59e-08
speciesEubacterium_cylindroides-0.131.52e-083.5e-08
orderBacillales-0.1291.94e-084.45e-08
genusBlautia-0.1292.02e-084.61e-08
speciesLactococcus_lactis-0.1282.71e-086.15e-08
speciesEubacterium_ventriosum-0.1282.79e-086.3e-08
speciesLachnospiraceae_bacterium_1_4_56FAA0.1283.14e-087.06e-08
speciesTuricibacter_sanguinis-0.1273.45e-087.72e-08
speciesEubacterium_dolichum0.1273.83e-088.53e-08
speciesRuminococcus_sp_JC304-0.1264.25e-089.42e-08
familyAcidaminococcaceae-0.1264.51e-089.95e-08
genusAnaerotruncus-0.1264.84e-081.06e-07
classDeltaproteobacteria0.1247.18e-081.55e-07
orderDesulfovibrionales0.1247.18e-081.55e-07
familyDesulfovibrionaceae0.1247.18e-081.55e-07
speciesAnaerotruncus_colihominis0.1238.54e-081.84e-07
speciesPeptostreptococcaceae_noname_unclassified-0.1221.16e-072.49e-07
genusBarnesiella-0.1221.18e-072.51e-07
speciesBarnesiella_intestinihominis-0.1221.18e-072.51e-07
speciesTuricibacter_unclassified-0.1221.22e-072.58e-07
speciesOdoribacter_splanchnicus0.1221.26e-072.65e-07
speciesStreptococcus_gordonii-0.1211.46e-073.06e-07
speciesDorea_unclassified0.1211.58e-073.3e-07
speciesOscillibacter_unclassified0.1211.69e-073.51e-07
speciesClostridium_ramosum0.122.16e-074.47e-07
genusVeillonella0.1192.25e-074.64e-07
genusDesulfovibrio-0.1192.26e-074.64e-07
speciesStreptococcus_vestibularis-0.1192.4e-074.9e-07
familyRikenellaceae0.1192.46e-074.98e-07
genusAlistipes0.1192.46e-074.98e-07
speciesBacteroides_sp_2_1_220.1183.25e-076.56e-07
speciesClostridium_bartlettii-0.1183.31e-076.65e-07
speciesEubacterium_sp_3_1_310.1173.61e-077.22e-07
speciesBacteroides_cellulosilyticus0.1174e-077.97e-07
speciesStreptococcus_anginosus-0.1164.72e-079.36e-07
familyClostridiaceae0.1165.46e-071.08e-06
familyBacteroidales_noname-0.1147.49e-071.46e-06
genusBacteroidales_noname-0.1147.49e-071.46e-06
speciesBacteroidales_bacterium_ph8-0.1147.49e-071.46e-06
genusClostridium0.1147.53e-071.46e-06
speciesVeillonella_parvula0.1148.13e-071.57e-06
speciesBacteroides_oleiciplenus0.1139.25e-071.78e-06
familyEnterococcaceae-0.1139.48e-071.82e-06
speciesEggerthella_unclassified0.1131.05e-062.01e-06
familyLeuconostocaceae-0.1131.06e-062.02e-06
genusEnterococcus-0.1121.15e-062.18e-06
genusSiphoviridae_noname-0.1121.17e-062.21e-06
speciesLactobacillus_delbrueckii-0.1121.23e-062.31e-06
speciesBifidobacterium_bifidum-0.1111.41e-062.64e-06
genusOdoribacter0.111.73e-063.23e-06
speciesVeillonella_atypica0.1092.44e-064.53e-06
speciesVeillonella_unclassified0.1092.5e-064.63e-06
speciesFusobacterium_nucleatum0.1073.22e-065.94e-06
speciesOscillibacter_sp_KLE_17280.1073.76e-066.91e-06
speciesClostridium_sp_ATCC_BAA_4420.1064.23e-067.74e-06
speciesBacteroides_coprophilus-0.1064.4e-068.02e-06
speciesKlebsiella_pneumoniae0.1046.31e-061.15e-05
speciesEnterococcus_faecium-0.1029.67e-061.75e-05
speciesBifidobacterium_dentium-0.1011.11e-052e-05
familySiphoviridae-0.1011.24e-052.23e-05
speciesParabacteroides_merdae0.1011.25e-052.23e-05
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0982.07e-053.69e-05
phylumViruses_noname-0.0972.42e-054.28e-05
classViruses_noname-0.0972.42e-054.28e-05
familyPropionibacteriaceae-0.0972.51e-054.42e-05
genusEggerthella0.0963.41e-055.98e-05
genusFaecalibacterium-0.0953.58e-056.24e-05
speciesFaecalibacterium_prausnitzii-0.0953.58e-056.24e-05
speciesStreptococcus_pasteurianus0.0944.64e-058.05e-05
speciesBacteroides_massiliensis0.0935.26e-059.09e-05
speciesPrevotella_bivia0.0935.66e-059.75e-05
speciesOscillibacter_sp_KLE_17450.0935.98e-050.000103
genusKlebsiella0.0917.6e-050.00013
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0917.99e-050.000136
genusLachnospiraceae_noname-0.0918.37e-050.000142
speciesLactobacillus_gasseri-0.099.35e-050.000158
classGammaproteobacteria0.0890.0001080.000182
speciesLachnospiraceae_bacterium_5_1_57FAA0.0880.0001370.00023
orderCaudovirales-0.0860.0001820.000305
speciesStreptococcus_australis-0.0860.0001850.000309
speciesEscherichia_coli0.0860.0002010.000334
speciesEnterococcus_faecalis-0.0840.0002750.000455
genusParvimonas-0.0840.0002930.000484
speciesParvimonas_unclassified-0.0840.0002950.000485
speciesBacteroides_salyersiae0.0840.0002990.00049
speciesLactobacillus_plantarum-0.0820.0003880.000634
orderPseudomonadales-0.0810.0004220.000687
speciesEggerthella_sp_1_3_56FAA-0.0810.0004450.000722
speciesAcidaminococcus_fermentans-0.0780.0007720.00125
genusEscherichia0.0770.0008150.00131
speciesCampylobacter_concisus0.0770.0008990.00144
genusDialister-0.0760.0009420.00151
genusActinobacillus0.0760.0010.00159
speciesActinobacillus_unclassified0.0760.0010.00159
speciesHoldemania_sp_AP20.0760.001050.00166
speciesLactococcus_phage_jm2-0.0750.001090.00172
genusRuminococcaceae_noname-0.0750.001130.00177
speciesRuminococcaceae_bacterium_D16-0.0750.001130.00177
genusAggregatibacter0.0750.001150.0018
speciesRoseburia_unclassified-0.0740.001380.00215
speciesCollinsella_intestinalis0.0730.001510.00234
speciesBifidobacterium_angulatum-0.0730.001650.00255
speciesBacteroides_intestinalis0.0720.001850.00285
speciesBacteroides_plebeius-0.0710.002030.00312
genusMorganella0.070.002410.00368
speciesMorganella_morganii0.070.002410.00368
speciesBacteroides_salanitronis-0.0690.003020.0046
speciesMegasphaera_elsdenii-0.0680.003050.00463
speciesSlackia_piriformis-0.0680.003060.00463
genusRoseburia0.0680.003420.00516
speciesLactococcus_garvieae-0.0670.00370.00556
orderEnterobacteriales0.0660.004420.00658
familyEnterobacteriaceae0.0660.004420.00658
speciesAlistipes_indistinctus-0.0660.004420.00658
genusSlackia-0.0660.004520.00671
speciesMegamonas_rupellensis0.0650.00480.0071
genusMegasphaera0.0640.005380.00794
speciesBacteroides_barnesiae-0.0630.00610.00896
familyClostridiales_Family_XI_Incertae_Sedis-0.0630.006110.00896
speciesParabacteroides_johnsonii0.0630.006810.00995
speciesCollinsella_unclassified0.0620.006940.0101
speciesClostridium_spiroforme-0.0620.007290.0106
speciesSutterella_parvirubra0.0620.007330.0106
genusCampylobacter0.0620.007370.0106
speciesGemella_morbillorum-0.0610.007940.0114
speciesStreptococcus_mitis_oralis_pneumoniae-0.060.009130.0131
genusMegamonas0.060.00940.0134
speciesLactococcus_phage_phi7-0.060.00960.0137
speciesMegamonas_unclassified0.060.009720.0138
speciesOdoribacter_laneus-0.060.01010.0143
speciesAlistipes_putredinis0.0590.01060.015
genusSuccinatimonas-0.0580.01180.0166
speciesSuccinatimonas_hippei-0.0580.01180.0166
familySuccinivibrionaceae-0.0580.01190.0167
speciesButyrivibrio_unclassified-0.0580.01250.0175
genusCoprobacter-0.0580.01260.0175
speciesCoprobacter_fastidiosus-0.0580.01260.0175
speciesBlautia_hydrogenotrophica-0.0580.01270.0176
familyCampylobacteraceae0.0570.01310.0181
genusPantoea0.0560.0150.0206
speciesPantoea_unclassified0.0560.0150.0206
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0560.01510.0207
speciesEnterobacteria_phage_HK5440.0560.01550.0211
speciesBifidobacterium_pseudocatenulatum0.0560.01590.0216
speciesAlistipes_onderdonkii0.0560.01610.0218
speciesBlautia_producta0.0550.01640.0221
phylumSynergistetes0.0550.01650.0221
classSynergistia0.0550.01650.0221
orderSynergistales0.0550.01650.0221
familySynergistaceae0.0550.01650.0221
speciesC2likevirus_unclassified-0.0540.01910.0255
speciesRoseburia_inulinivorans0.0540.01960.0261
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0540.02010.0266
speciesBacteroides_clarus0.0540.02060.0272
genusPyramidobacter0.0540.02070.0272
speciesPyramidobacter_piscolens0.0540.02070.0272
speciesPeptostreptococcus_stomatis-0.0530.02110.0277
classNegativicutes-0.0530.0220.0287
orderSelenomonadales-0.0530.0220.0287
genusC2likevirus-0.0530.02250.0293
speciesEubacterium_eligens-0.0520.02340.0303
genusPeptostreptococcus-0.0510.02610.0338
speciesErysipelotrichaceae_bacterium_3_1_530.0510.02880.0371
speciesAggregatibacter_segnis0.050.0310.0399
speciesCitrobacter_unclassified0.050.03130.0401
genusCitrobacter0.0490.0330.0422
speciesBacteroides_sp_3_1_190.0490.03330.0425
speciesHaemophilus_sputorum0.0480.03640.0463
classEpsilonproteobacteria0.0480.03680.0466
orderCampylobacterales0.0480.03680.0466
speciesSutterella_wadsworthensis-0.0470.04010.0506
speciesPrevotella_stercorea-0.0470.04060.0511
speciesKlebsiella_sp_MS_92_30.0460.04440.0557
speciesParabacteroides_sp_D13-0.0450.04940.0618
genusPorphyromonas-0.0450.04980.0622
speciesLactobacillus_acidophilus-0.0450.05320.0663
familyPodoviridae0.0440.05490.0682
speciesLeuconostoc_lactis-0.0440.05850.0725
speciesWeissella_cibaria-0.0440.05960.0736
speciesBacteroides_eggerthii-0.0430.06030.0743
speciesBacteroides_coprocola-0.0430.06220.0765
speciesCitrobacter_freundii0.0430.06240.0765
speciesClostridium_perfringens0.0430.06470.0791
speciesLactobacillus_fermentum-0.0420.06740.0822
speciesEggerthella_lenta-0.0420.06760.0822
speciesLactobacillus_reuteri-0.0410.07660.0929
speciesProteus_mirabilis0.0410.07810.0945
genusButyricicoccus0.040.08030.0967
speciesButyricicoccus_pullicaecorum0.040.08030.0967
speciesLactobacillus_sanfranciscensis-0.040.08250.0991
speciesBacteroides_finegoldii0.040.0870.104
speciesAcidaminococcus_intestini0.040.08760.105
speciesPorphyromonas_asaccharolytica-0.0390.0920.11
speciesStreptococcus_infantarius0.0390.0940.112
speciesEubacterium_limosum-0.0380.09980.118
speciesCollinsella_tanakaei0.0370.1090.129
speciesHaemophilus_paraphrohaemolyticus0.0360.1170.138
speciesParabacteroides_goldsteinii0.0360.120.141
genusButyricimonas0.0350.1250.146
genusProteus0.0360.1250.146
speciesButyricimonas_synergistica0.0350.1250.146
speciesKlebsiella_unclassified0.0350.1350.157
speciesPeptostreptococcus_anaerobius-0.0340.1370.159
speciesLactobacillus_salivarius0.0340.140.162
speciesDesulfovibrio_desulfuricans-0.0340.1450.168
genusAcidaminococcaceae_unclassified0.0330.1490.172
genusSutterella-0.0330.1560.179
speciesStreptococcus_lutetiensis0.0330.1560.179
speciesOdoribacter_unclassified-0.0310.1860.213
speciesEnterobacter_aerogenes0.030.1890.216
speciesAlistipes_sp_AP11-0.030.20.228
speciesErysipelotrichaceae_bacterium_6_1_45-0.0280.2210.251
speciesHoldemania_filiformis-0.0280.2220.252
speciesLactobacillus_amylovorus-0.0280.2240.254
genusHoldemania0.0250.2730.308
speciesAlistipes_unclassified-0.0250.2790.314
speciesBacteroides_sp_4_3_47FAA0.0240.2960.333
speciesMegamonas_funiformis-0.0240.30.336
orderViruses_noname-0.0240.3060.342
genusStaphylococcus-0.0230.320.357
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0220.3420.381
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0220.3510.39
orderAeromonadales-0.0210.3630.402
speciesAlistipes_sp_HGB50.020.380.42
genusAcidaminococcus-0.020.3830.422
genusPeptoniphilus0.020.3980.438
genusWeissella-0.0190.4140.454
speciesBacteroides_sp_1_1_60.0190.420.46
genusSutterellaceae_unclassified0.0180.4330.473
speciesBifidobacterium_breve-0.0180.4450.485
speciesRoseburia_intestinalis0.0160.4810.523
speciesLactobacillus_vaginalis-0.0150.5070.55
speciesHoldemania_unclassified-0.0150.5080.55
speciesBacteroides_fluxus-0.0140.5310.573
speciesParabacteroides_sp_20_3-0.0140.5320.573
genusTunalikevirus0.0140.540.581
genusLambdalikevirus-0.0140.5430.582
speciesLactobacillus_oris-0.0120.5990.641
speciesMegamonas_hypermegale0.0120.6170.659
speciesAlistipes_finegoldii0.0110.6260.667
speciesKlebsiella_phage_KP360.0110.6310.671
speciesWeissella_confusa-0.0110.6490.688
speciesLactococcus_phage_bIL670.0090.6980.739
speciesStreptococcus_phage_Sfi210.0080.7140.754
familyStaphylococcaceae-0.0080.7260.765
speciesClostridium_sp_KLE_1755-0.0070.7540.793
genusMyoviridae_noname0.0070.7660.803
familyViruses_noname0.0060.7850.82
genusViruses_noname0.0060.7850.82
familyVeillonellaceae0.0060.790.823
speciesPorphyromonas_uenonis-0.0060.8080.84
speciesKlebsiella_oxytoca-0.0050.8220.853
speciesMegasphaera_unclassified0.0050.8250.854
familyMyoviridae-0.0050.8360.863
speciesLactobacillus_crispatus-0.0050.8430.869
speciesErysipelotrichaceae_bacterium_2_2_44A0.0040.8620.886
genusCoriobacteriaceae_noname-0.0040.8650.888
speciesEnterobacter_cloacae0.0040.8780.899
genusEnterobacter0.0030.8920.911
speciesCoriobacteriaceae_bacterium_phI-0.0030.8990.916
speciesCoprobacillus_sp_D60.0030.9010.917
speciesAlistipes_shahii-0.0030.9050.919
speciesBacteroides_faecis0.0020.9310.942
speciesEscherichia_unclassified-0.0020.9320.942
speciesCoprobacillus_sp_29_10.0010.950.958
speciesDialister_invisus-0.0010.9760.982
speciesAcidaminococcus_unclassified0.0010.9780.982
speciesLactococcus_phage_936_sensu_lato0.00.9850.987
speciesLactobacillus_mucosae0.00.9930.993
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.1575680908460.05725549998664.49970916781e-065431.80549
ObesityDenmark1691230.05683418585950.04229188965720.0649555890353576318.9504
Liver cirrhosisChina1201140.1326001058250.1035189521960.1152590099411715557.6271
Rheumatoid arthritisChina127980.06385525148610.06084582472110.233751498886997833.2744
Colorectal cancerAustria64350.01532024481750.01156309227850.3248696897661311344.3666
Type II diabetesDenmark752770.04873939697840.05103822225770.4866775497742019366.1914
Type II diabetesSweden53920.01731520568650.01975262363970.6103935877691913064.7816
Ulcerative colitisSpain78660.05027695099060.05725549998660.6629024089132303375.9814
Type II diabetesChina1831850.08881602548330.09794742993710.8316963783092714489.7055
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382