MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-09 23:59:29 PST
Job id & description: 2169, lytR
Query type: dna
Count queries & homologs: 1, 2
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
lytR3187082CompleteK02477COG3279FirmicutesFaecalibacterium100.087.0598.35
lytR3802164CompleteK02477COG3279unknownunknown84.7184.3680.35
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusFaecalibacterium0.483.46e-1088.17e-106
speciesFaecalibacterium_prausnitzii0.483.46e-1088.17e-106
familyRuminococcaceae0.47.62e-731.2e-70
genusCoprococcus0.384.04e-654.77e-63
speciesCoprococcus_catus0.3671.33e-601.26e-58
speciesEubacterium_ramulus0.3641.61e-591.27e-57
speciesCoprococcus_comes0.3468.99e-546.06e-52
speciesEubacterium_rectale0.3461.25e-537.37e-52
genusEubacterium0.3431.11e-525.82e-51
familyEubacteriaceae0.3431.24e-525.85e-51
classClostridia0.3261.6e-476.29e-46
orderClostridiales0.3261.6e-476.29e-46
genusCoprobacillus-0.3261.96e-477.12e-46
speciesCollinsella_aerofaciens0.3231.3e-464.38e-45
speciesCoprobacillus_unclassified-0.3231.46e-464.59e-45
speciesRuminococcus_gnavus-0.3215.61e-461.65e-44
speciesDorea_longicatena0.3161.59e-444.41e-43
speciesClostridium_ramosum-0.3081.73e-424.54e-41
speciesDorea_formicigenerans0.3012.04e-405.07e-39
genusDorea0.2972.49e-395.88e-38
speciesSubdoligranulum_unclassified0.2941.4e-383.15e-37
speciesRuminococcus_obeum0.2924.67e-381e-36
genusCollinsella0.2911.08e-372.22e-36
phylumFirmicutes0.2893.09e-376.08e-36
speciesEubacterium_hallii0.2893.25e-376.14e-36
speciesBifidobacterium_adolescentis0.2861.95e-363.54e-35
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.2844.41e-367.71e-35
genusSubdoligranulum0.2836.71e-361.13e-34
speciesEubacterium_ventriosum0.2791.13e-341.84e-33
speciesClostridium_clostridioforme-0.2725.09e-338.01e-32
speciesClostridium_bolteae-0.2683.15e-324.8e-31
genusAdlercreutzia0.2684.15e-325.94e-31
speciesAdlercreutzia_equolifaciens0.2684.15e-325.94e-31
speciesEubacterium_siraeum0.2661.39e-311.93e-30
speciesRuminococcus_sp_5_1_39BFAA0.2642.87e-313.87e-30
speciesFusobacterium_ulcerans-0.2594.68e-306.14e-29
speciesClostridiales_bacterium_1_7_47FAA-0.2562.95e-293.76e-28
genusRuminococcus0.2531.29e-281.6e-27
phylumFusobacteria-0.2513.26e-283.75e-27
classFusobacteriia-0.2513.26e-283.75e-27
orderFusobacteriales-0.2513.26e-283.75e-27
familyFusobacteriaceae-0.2497.51e-288.44e-27
speciesClostridium_nexile-0.2491.01e-271.11e-26
speciesAnaerostipes_unclassified-0.2481.06e-271.14e-26
genusFusobacterium-0.2456.59e-276.91e-26
speciesRoseburia_inulinivorans0.2431.63e-261.67e-25
speciesRoseburia_hominis0.2413.61e-263.63e-25
orderCoriobacteriales0.2373.45e-253.32e-24
familyCoriobacteriaceae0.2373.45e-253.32e-24
speciesClostridium_symbiosum-0.2356.59e-256.22e-24
speciesLachnospiraceae_bacterium_6_1_63FAA-0.2281.67e-231.55e-22
familyBacteroidales_noname0.2281.92e-231.68e-22
genusBacteroidales_noname0.2281.92e-231.68e-22
speciesBacteroidales_bacterium_ph80.2281.92e-231.68e-22
speciesBlautia_producta-0.2231.46e-221.25e-21
speciesClostridium_hathewayi-0.227.35e-226.2e-21
familyBacteroidaceae-0.2172.15e-211.75e-20
genusBacteroides-0.2172.15e-211.75e-20
speciesEubacterium_eligens0.2163.52e-212.82e-20
speciesAnaerotruncus_unclassified0.2146.82e-215.37e-20
familyClostridiaceae-0.2071.61e-191.25e-18
genusEscherichia-0.2071.66e-191.26e-18
phylumBacteroidetes-0.2071.72e-191.26e-18
classBacteroidia-0.2071.74e-191.26e-18
orderBacteroidales-0.2071.74e-191.26e-18
speciesEscherichia_coli-0.2053.36e-192.4e-18
genusRoseburia0.2053.55e-192.5e-18
genusClostridiales_noname-0.2054.1e-192.85e-18
speciesFusobacterium_varium-0.2044.78e-193.27e-18
genusClostridium-0.2045.31e-193.58e-18
orderEnterobacteriales-0.2045.77e-193.78e-18
familyEnterobacteriaceae-0.2045.77e-193.78e-18
speciesAnaerostipes_hadrus0.2045.87e-193.8e-18
classGammaproteobacteria-0.2037.35e-194.69e-18
speciesRuminococcus_lactaris0.2011.7e-181.07e-17
genusBarnesiella0.1951.71e-171.05e-16
speciesBarnesiella_intestinihominis0.1951.71e-171.05e-16
speciesCoprococcus_sp_ART55_10.1934.22e-172.55e-16
phylumActinobacteria0.1925.18e-173.06e-16
classActinobacteria0.1925.18e-173.06e-16
speciesRuminococcus_callidus0.191.32e-167.69e-16
speciesClostridium_leptum0.1891.82e-161.05e-15
speciesLachnospiraceae_bacterium_3_1_46FAA0.1891.93e-161.1e-15
speciesRuminococcus_bromii0.1821.89e-151.06e-14
genusButyrivibrio0.1771.33e-147.39e-14
genusCoprobacter0.1752.6e-141.41e-13
speciesCoprobacter_fastidiosus0.1752.6e-141.41e-13
speciesRoseburia_intestinalis0.1752.81e-141.51e-13
speciesAlistipes_senegalensis0.1743.52e-141.87e-13
genusBifidobacterium0.1718.7e-144.56e-13
speciesBifidobacterium_longum0.1719.95e-145.16e-13
speciesAlistipes_putredinis0.171.22e-136.26e-13
orderBifidobacteriales0.1692.01e-131.01e-12
familyBifidobacteriaceae0.1692.01e-131.01e-12
speciesLachnospiraceae_bacterium_5_1_57FAA-0.1692.15e-131.07e-12
phylumProteobacteria-0.1682.37e-131.17e-12
genusMitsuokella0.1656.44e-133.13e-12
genusFlavonifractor-0.1658.02e-133.82e-12
speciesFlavonifractor_plautii-0.1658.02e-133.82e-12
speciesMitsuokella_unclassified0.1648.25e-133.89e-12
familyLachnospiraceae0.1622.06e-129.63e-12
speciesAlistipes_shahii0.1594.35e-122.01e-11
speciesEubacterium_biforme0.1571.01e-114.63e-11
speciesDorea_unclassified-0.1561.31e-115.95e-11
speciesEggerthella_unclassified-0.1541.99e-118.95e-11
speciesStreptococcus_thermophilus0.157.12e-113.17e-10
speciesOlsenella_unclassified0.1499.76e-114.31e-10
genusRuminococcaceae_noname0.1471.64e-107.1e-10
speciesRuminococcaceae_bacterium_D160.1471.64e-107.1e-10
familyClostridiales_noname-0.1471.68e-107.21e-10
phylumEuryarchaeota0.1453.1e-101.32e-09
genusPseudoflavonifractor0.1453.2e-101.34e-09
speciesPseudoflavonifractor_capillosus0.1453.2e-101.34e-09
speciesBacteroides_fragilis-0.1443.45e-101.43e-09
speciesCoprococcus_eutactus0.1443.62e-101.49e-09
genusEggerthella-0.1434.78e-101.94e-09
genusKlebsiella-0.1426.69e-102.7e-09
speciesClostridium_citroniae-0.1418.7e-103.48e-09
speciesLachnospiraceae_bacterium_5_1_63FAA0.141.22e-094.84e-09
classMethanobacteria0.1391.52e-095.83e-09
orderMethanobacteriales0.1391.52e-095.83e-09
familyMethanobacteriaceae0.1391.52e-095.83e-09
speciesMethanobrevibacter_smithii0.1391.52e-095.83e-09
genusMethanobrevibacter0.1382.06e-097.78e-09
speciesKlebsiella_pneumoniae-0.1382.06e-097.78e-09
speciesClostridium_sp_L2_500.1363.44e-091.29e-08
speciesSutterella_wadsworthensis0.1354.81e-091.79e-08
speciesLachnospiraceae_bacterium_2_1_46FAA-0.1346.59e-092.43e-08
speciesBifidobacterium_catenulatum0.1329.24e-093.38e-08
genusOlsenella0.1321.03e-083.74e-08
genusAnaerotruncus0.1321.13e-084.07e-08
phylumVerrucomicrobia0.1311.27e-084.38e-08
classVerrucomicrobiae0.1311.27e-084.38e-08
orderVerrucomicrobiales0.1311.27e-084.38e-08
familyVerrucomicrobiaceae0.1311.27e-084.38e-08
genusAkkermansia0.1311.27e-084.38e-08
speciesAkkermansia_muciniphila0.1311.27e-084.38e-08
speciesLachnospiraceae_bacterium_1_4_56FAA-0.1311.42e-084.86e-08
genusOdoribacter0.131.51e-085.13e-08
familyRikenellaceae0.131.61e-085.39e-08
genusAlistipes0.131.61e-085.39e-08
genusSutterella0.1292.01e-086.68e-08
speciesButyrivibrio_unclassified0.1282.67e-088.81e-08
speciesMegasphaera_micronuciformis-0.1264.52e-081.48e-07
speciesFusobacterium_mortiferum-0.1211.42e-074.62e-07
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1211.48e-074.78e-07
speciesBacteroides_thetaiotaomicron-0.1183.08e-079.89e-07
speciesFusobacterium_nucleatum-0.1183.33e-071.06e-06
speciesLachnospiraceae_bacterium_7_1_58FAA0.1174.16e-071.32e-06
speciesBifidobacterium_bifidum0.1174.25e-071.34e-06
speciesAlistipes_onderdonkii0.1164.4e-071.38e-06
speciesParabacteroides_unclassified-0.1164.47e-071.39e-06
genusParaprevotella0.1156.23e-071.92e-06
speciesPrevotella_buccae-0.1146.93e-072.12e-06
genusPhascolarctobacterium0.1147.11e-072.15e-06
speciesPhascolarctobacterium_succinatutens0.1147.11e-072.15e-06
speciesRuminococcus_torques0.1148.49e-072.55e-06
speciesParaprevotella_unclassified0.1139.72e-072.9e-06
speciesParaprevotella_xylaniphila0.1121.08e-063.21e-06
speciesAlistipes_finegoldii0.1121.29e-063.81e-06
speciesParaprevotella_clara0.111.78e-065.22e-06
speciesButyrivibrio_crossotus0.112.02e-065.89e-06
speciesOdoribacter_splanchnicus0.1092.09e-066.05e-06
genusDesulfovibrio0.1092.28e-066.56e-06
speciesStreptococcus_pasteurianus-0.1054.96e-061.42e-05
familyAcidaminococcaceae0.1055.11e-061.45e-05
speciesAlistipes_indistinctus0.1046.72e-061.9e-05
speciesEubacterium_cylindroides0.1047.01e-061.97e-05
speciesMethanobrevibacter_unclassified0.1037.48e-062.09e-05
genusCatenibacterium0.1021.06e-052.93e-05
speciesCatenibacterium_mitsuokai0.1021.06e-052.93e-05
genusPantoea-0.1011.2e-053.27e-05
speciesPantoea_unclassified-0.1011.2e-053.27e-05
genusParabacteroides-0.1011.28e-053.47e-05
speciesHoldemania_unclassified0.0991.83e-054.94e-05
speciesHoldemania_filiformis0.0982.29e-056.14e-05
genusCitrobacter-0.0963.35e-058.93e-05
genusTuricibacter0.0953.77e-050.0001
speciesAlistipes_sp_AP110.0953.94e-050.000104
speciesTuricibacter_unclassified0.0954.01e-050.000105
speciesBlautia_hydrogenotrophica0.0936.03e-050.000157
speciesEnterobacter_cloacae-0.0926.74e-050.000175
genusHoldemania0.0917.79e-050.000201
speciesPeptostreptococcaceae_noname_unclassified0.0918.24e-050.000211
genusMorganella-0.0918.49e-050.000215
speciesMorganella_morganii-0.0918.49e-050.000215
speciesEubacterium_limosum-0.0918.55e-050.000215
speciesDesulfovibrio_desulfuricans0.0918.56e-050.000215
speciesCitrobacter_unclassified-0.099.1e-050.000227
genusGordonibacter0.0880.0001360.000336
speciesGordonibacter_pamelaeae0.0880.0001360.000336
speciesCitrobacter_freundii-0.0870.0001660.000408
speciesClostridium_asparagiforme-0.0870.0001750.000428
speciesLactobacillus_salivarius-0.0860.0001870.000455
speciesVeillonella_parvula-0.0840.0002960.000716
speciesEubacterium_dolichum-0.0820.0003550.000855
speciesBifidobacterium_angulatum0.0820.0003790.000908
speciesLactobacillus_mucosae-0.0810.0004650.00111
familyOxalobacteraceae0.0810.0004790.00113
genusOxalobacter0.0810.0004810.00113
speciesOxalobacter_formigenes0.0810.0004810.00113
genusEnterobacter-0.080.0005110.00119
genusAnaerostipes0.080.0005270.00123
speciesLachnospiraceae_bacterium_1_1_57FAA0.080.0005640.0013
speciesClostridium_sp_KLE_1755-0.0790.0006790.00156
speciesTuricibacter_sanguinis0.0780.000690.00158
speciesOdoribacter_unclassified0.0780.0007060.00161
speciesLactococcus_lactis0.0780.0007140.00162
speciesClostridium_sp_ATCC_BAA_442-0.0780.0007380.00167
genusDialister0.0770.0008370.00188
genusSiphoviridae_noname0.0760.0009320.00208
genusLactococcus0.0760.001040.00232
familySutterellaceae0.0760.001080.00239
speciesRuminococcus_champanellensis0.0750.001180.0026
genusButyricicoccus-0.0750.001230.00269
speciesButyricicoccus_pullicaecorum-0.0750.001230.00269
genusMegasphaera-0.0740.001310.00284
speciesLactobacillus_ruminis0.0740.001310.00284
speciesOscillibacter_unclassified0.0740.001390.003
genusVeillonella-0.0730.001580.00339
speciesLachnospiraceae_bacterium_8_1_57FAA0.0730.001690.00361
speciesStreptococcus_lutetiensis-0.0720.001730.00368
speciesDesulfovibrio_piger0.0720.001780.00377
speciesEubacterium_sp_3_1_31-0.0710.002050.00432
speciesParabacteroides_merdae0.070.002380.00499
speciesMitsuokella_multacida0.070.002480.00518
speciesLactococcus_phage_P6800.0690.00270.00561
speciesVeillonella_dispar-0.0690.0030.00621
speciesCollinsella_unclassified-0.0680.003420.00705
speciesBacteroides_pectinophilus0.0670.003540.00726
speciesStreptococcus_parasanguinis0.0670.003620.0074
speciesBacteroides_coprocola0.0670.003730.00759
speciesBacteroides_coprophilus0.0660.004060.00822
speciesBacteroides_ovatus-0.0660.004360.00879
familyOscillospiraceae0.0660.004450.0089
genusOscillibacter0.0660.004450.0089
speciesCampylobacter_concisus-0.0650.004830.00962
speciesEscherichia_unclassified-0.0650.005040.01
familySiphoviridae0.0640.005450.0108
phylumViruses_noname0.0640.005740.0112
classViruses_noname0.0640.005740.0112
familyLactobacillaceae0.0640.0060.0117
speciesBacteroides_stercoris-0.0630.006710.013
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0630.006740.013
speciesMegamonas_unclassified-0.0620.007770.015
genusMegamonas-0.0610.008060.0155
speciesPropionibacterium_freudenreichii0.0610.008160.0156
speciesDialister_succinatiphilus0.0610.008210.0156
speciesBacteroides_sp_1_1_6-0.0610.008230.0156
speciesKlebsiella_unclassified-0.0610.00870.0164
orderBurkholderiales0.060.008970.0169
genusLactobacillus0.060.009050.017
speciesStreptococcus_salivarius0.060.009170.0171
familyPrevotellaceae0.060.009720.0181
speciesBifidobacterium_animalis0.0580.01180.0218
genusPeptostreptococcaceae_noname0.0570.01320.0242
speciesRoseburia_unclassified-0.0570.01320.0242
speciesPorphyromonas_asaccharolytica0.0570.01370.0251
genusParasutterella0.0570.01450.0263
speciesParasutterella_excrementihominis0.0570.01450.0263
genusC2likevirus0.0560.01520.0275
speciesCollinsella_intestinalis-0.0560.01560.0281
genusCampylobacter-0.0560.01620.029
speciesLactobacillus_fermentum-0.0560.01620.029
speciesStreptococcus_mitis_oralis_pneumoniae-0.0560.01630.029
speciesClostridium_perfringens-0.0550.01650.0293
speciesErysipelotrichaceae_bacterium_3_1_53-0.0550.01730.0306
familyCampylobacteraceae-0.0540.0190.0335
familyPeptostreptococcaceae0.0540.01960.0344
classBetaproteobacteria0.0540.02040.0357
speciesVeillonella_atypica-0.0530.02180.038
speciesStreptococcus_infantarius-0.0530.02280.0396
speciesLactobacillus_delbrueckii0.0520.02370.041
speciesC2likevirus_unclassified0.0520.0240.0413
speciesLactobacillus_acidophilus0.0520.02440.0419
genusAcidaminococcaceae_unclassified0.0510.02820.0482
speciesDialister_invisus0.050.02920.0498
speciesVeillonella_unclassified-0.0490.03350.0569
orderViruses_noname0.0490.03430.058
genusLeuconostoc0.0490.03480.0585
speciesLactococcus_phage_bIL670.0490.03480.0585
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0490.03540.0593
speciesCoprobacillus_sp_D6-0.0480.03680.0613
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0480.03690.0613
speciesCoprobacillus_sp_29_1-0.0480.03720.0616
speciesBacteroides_xylanisolvens-0.0480.03740.0617
classEpsilonproteobacteria-0.0480.03970.0651
orderCampylobacterales-0.0480.03970.0651
speciesLactobacillus_plantarum0.0470.04090.0668
classBacilli0.0470.04440.0723
familyEnterococcaceae-0.0460.04720.0766
speciesLactobacillus_casei_paracasei0.0460.04740.0766
orderCaudovirales0.0460.04770.0768
speciesBacteroides_nordii-0.0450.05120.0822
speciesAcidaminococcus_unclassified0.0450.05220.0828
classDeltaproteobacteria0.0450.05230.0828
orderDesulfovibrionales0.0450.05230.0828
familyDesulfovibrionaceae0.0450.05230.0828
orderLactobacillales0.0450.05430.0855
classNegativicutes0.0440.05450.0855
orderSelenomonadales0.0440.05450.0855
genusBurkholderiales_noname0.0440.05770.0899
speciesBurkholderiales_bacterium_1_1_470.0440.05770.0899
familyStreptococcaceae0.0440.05980.0928
genusEnterococcus-0.0440.060.0929
speciesKlebsiella_sp_MS_92_3-0.0430.06060.0935
genusStreptococcus0.0430.0610.0938
speciesStreptococcus_anginosus-0.0430.06190.0949
familyBurkholderiales_noname0.0430.06270.0958
genusPorphyromonas0.0430.06470.0985
speciesLactococcus_phage_jm20.0420.06730.102
speciesBacteroides_clarus0.0420.06940.105
speciesBacteroides_eggerthii0.0420.06960.105
speciesStreptococcus_vestibularis0.0410.07770.117
speciesAlistipes_sp_HGB50.0410.07890.118
speciesParabacteroides_johnsonii0.040.08610.129
familyPorphyromonadaceae-0.0390.08820.131
speciesLactococcus_phage_936_sensu_lato0.0390.08920.132
genusPropionibacterium0.0380.0980.145
speciesAnaerotruncus_colihominis-0.0380.09820.145
speciesSlackia_piriformis0.0380.09940.146
genusProteus-0.0380.10.147
genusPeptostreptococcus-0.0380.1030.151
speciesKlebsiella_oxytoca-0.0370.110.16
speciesBacteroides_oleiciplenus-0.0360.1160.168
speciesBifidobacterium_dentium-0.0360.1210.175
genusMethanosphaera0.0360.1240.178
speciesMethanosphaera_stadtmanae0.0360.1240.178
familyStaphylococcaceae0.0350.1250.179
genusAggregatibacter-0.0350.1280.183
familyMyoviridae-0.0350.1310.187
genusStaphylococcus0.0330.1490.212
speciesLactobacillus_sanfranciscensis0.0330.150.213
speciesRuminococcus_sp_JC3040.0330.1510.213
speciesOdoribacter_laneus0.0330.1540.217
speciesLactococcus_phage_phi70.0330.160.225
orderAeromonadales-0.0320.1610.225
speciesBacteroides_salanitronis0.0320.1610.225
speciesBilophila_wadsworthia0.0320.1640.228
familyPropionibacteriaceae0.0320.1660.23
speciesAcidaminococcus_fermentans-0.0310.1770.245
speciesPrevotella_bivia-0.0310.1820.251
phylumSynergistetes-0.0310.1840.251
classSynergistia-0.0310.1840.251
orderSynergistales-0.0310.1840.251
familySynergistaceae-0.0310.1840.251
speciesBacteroides_massiliensis0.0310.1860.253
speciesBacteroides_cellulosilyticus0.030.1880.255
genusBilophila0.030.190.257
speciesEnterococcus_faecalis-0.030.2010.271
genusHaemophilus-0.0290.2090.281
orderPasteurellales-0.0290.2120.283
familyPasteurellaceae-0.0290.2120.283
speciesBacteroides_sp_4_3_47FAA0.0290.2150.287
speciesBifidobacterium_breve-0.0290.2170.289
speciesHaemophilus_parainfluenzae-0.0280.2190.29
speciesEggerthella_lenta-0.0280.220.29
speciesBacteroides_sp_2_1_220.0280.220.29
speciesStreptococcus_gordonii-0.0280.2280.3
speciesBilophila_unclassified0.0270.2360.309
genusLambdalikevirus-0.0270.2420.316
familyViruses_noname0.0270.250.325
genusViruses_noname0.0270.250.325
speciesHoldemania_sp_AP2-0.0260.2540.329
speciesBacteroides_uniformis0.0260.2550.33
genusPyramidobacter-0.0260.2580.332
speciesPyramidobacter_piscolens-0.0260.2580.332
familyBacillales_noname-0.0260.2690.344
genusGemella-0.0260.2690.344
speciesParabacteroides_goldsteinii-0.0250.2710.346
speciesBacteroides_caccae0.0250.2730.347
speciesCollinsella_tanakaei0.0250.2860.363
genusPeptoniphilus-0.0250.2890.366
speciesMegamonas_hypermegale-0.0240.2910.367
speciesLactobacillus_amylovorus-0.0240.2920.368
speciesHaemophilus_sputorum0.0240.2980.374
speciesMegasphaera_unclassified-0.0240.3050.382
speciesStreptococcus_mutans0.0240.3080.385
speciesClostridium_bartlettii0.0230.3110.387
speciesAlistipes_unclassified-0.0230.3150.391
speciesBacteroides_vulgatus-0.0230.3190.395
speciesLactobacillus_crispatus-0.0220.3350.414
genusWeissella-0.0220.3410.42
speciesAggregatibacter_segnis-0.0220.3420.42
speciesProteus_mirabilis-0.0220.350.428
speciesLactobacillus_oris-0.0220.350.428
genusParvimonas0.0220.3520.429
speciesParvimonas_unclassified0.0210.3530.429
genusBlautia-0.0210.3540.43
speciesBacteroides_sp_3_1_19-0.0210.360.436
speciesMegamonas_rupellensis-0.0210.3630.438
speciesPrevotella_stercorea-0.0210.3690.444
speciesLactobacillus_rhamnosus0.0210.3720.447
speciesStreptococcus_australis0.020.3790.454
speciesPeptostreptococcus_stomatis-0.020.390.466
speciesErysipelotrichaceae_bacterium_21_30.020.3940.47
orderActinomycetales0.0190.4010.477
familyLeuconostocaceae0.0190.420.498
genusTunalikevirus-0.0180.4240.5
genusActinobacillus-0.0180.4250.5
speciesActinobacillus_unclassified-0.0180.4250.5
speciesBacteroides_faecis0.0180.4260.5
speciesSutterella_parvirubra-0.0180.4420.518
genusPrevotella-0.0170.4520.528
familyClostridiales_Family_XI_Incertae_Sedis-0.0170.4560.53
speciesAcidaminococcus_intestini-0.0170.4560.53
speciesPorphyromonas_uenonis-0.0170.4750.549
speciesLeuconostoc_lactis0.0170.4750.549
speciesLactobacillus_reuteri-0.0160.4760.549
genusErysipelotrichaceae_noname0.0160.4840.557
orderBacillales-0.0160.4990.573
speciesStreptococcus_phage_Sfi210.0150.5130.588
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0150.5180.592
genusLachnospiraceae_noname0.0150.5210.594
speciesMegamonas_funiformis-0.0140.5420.616
classErysipelotrichia-0.0140.5560.628
orderErysipelotrichales-0.0140.5560.628
familyErysipelotrichaceae-0.0140.5560.628
speciesWeissella_confusa-0.0140.5590.63
speciesBacteroides_intestinalis-0.0130.5690.639
orderPseudomonadales-0.0130.5810.651
speciesOscillibacter_sp_KLE_17450.0130.5820.651
speciesGemella_morbillorum-0.0120.5970.666
genusClostridiaceae_noname-0.0120.6130.679
speciesHaemophilus_paraphrohaemolyticus-0.0120.6130.679
speciesClostridiaceae_bacterium_JC118-0.0120.6130.679
speciesPeptostreptococcus_anaerobius-0.0110.620.685
speciesParabacteroides_sp_20_3-0.0110.6220.686
speciesKlebsiella_phage_KP36-0.0110.6250.688
speciesLactobacillus_gasseri0.0110.6350.697
genusSlackia0.0110.640.701
speciesOscillibacter_sp_KLE_17280.0110.6440.702
speciesCoriobacteriaceae_bacterium_phI-0.0110.6440.702
genusButyricimonas0.010.6640.72
speciesButyricimonas_synergistica0.010.6640.72
speciesBacteroides_plebeius0.010.6790.735
speciesBacteroides_fluxus-0.0090.6880.743
speciesEnterobacteria_phage_HK5440.0090.7120.767
speciesPrevotella_copri-0.0080.7180.772
speciesRothia_mucilaginosa0.0080.7350.788
speciesErysipelotrichaceae_bacterium_6_1_45-0.0070.750.802
speciesLactobacillus_vaginalis-0.0070.7510.802
speciesStreptococcus_sanguinis0.0070.7620.812
speciesBacteroides_barnesiae-0.0070.7710.82
genusCoriobacteriaceae_noname-0.0060.7960.844
speciesBifidobacterium_pseudocatenulatum-0.0050.8250.873
speciesParabacteroides_distasonis-0.0050.8380.885
speciesBacteroides_finegoldii0.0050.840.885
genusAcidaminococcus0.0050.8440.887
speciesClostridium_spiroforme-0.0040.8580.9
genusMyoviridae_noname-0.0040.8660.906
speciesBacteroides_salyersiae0.0030.8810.92
speciesBacteroides_dorei0.0030.8830.92
speciesParabacteroides_sp_D130.0030.8890.924
familySuccinivibrionaceae0.0030.9110.942
genusSolobacterium-0.0030.9140.942
speciesSolobacterium_moorei-0.0030.9140.942
speciesEnterobacter_aerogenes-0.0030.9140.942
familyActinomycetaceae-0.0020.9230.949
speciesWeissella_cibaria0.0020.9270.951
speciesMegasphaera_elsdenii0.0020.9320.954
genusSuccinatimonas-0.0020.9370.955
speciesSuccinatimonas_hippei-0.0020.9370.955
familyMicrococcaceae-0.0020.9450.961
speciesEnterococcus_faecium0.0010.9520.966
genusSutterellaceae_unclassified-0.0010.9560.968
genusRothia-0.0010.960.97
familyPodoviridae0.0010.9810.987
speciesLactococcus_garvieae0.0010.9810.987
familyVeillonellaceae-0.0010.9830.987
speciesEggerthella_sp_1_3_56FAA0.00.9860.988
genusActinomyces0.00.9910.991
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.003353978975270.004603424887690.000258040797676600920.1854
Crohns diseaseSpain17660.002086240941580.004427408318020.00029677288934428449.45636
Ulcerative colitisSpain78660.006907662432790.004427408318020.0249579470372317810.4836
ObesityDenmark1691230.005773792983850.003828178011420.12822549947850127.9537
Type II diabetesChina1831850.003912610538460.00389603918190.2016944608361332744.0431
Rheumatoid arthritisChina127980.003711876007880.004684454038440.3363178893771304843.5122
Type II diabetesSweden53920.01086640488980.01232219629740.3933367380291280843.3728
Colorectal cancerAustria64350.006551602405940.005965318192810.7373083370882390180.8668
Type II diabetesDenmark752770.005244202808450.004993821136380.8164535871412701388.5469
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382