MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-11 23:33:10 PST
Job id & description: 2173, PAD
Query type: protein
Count queries & homologs: 1, 35
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
PAD5331931CompleteK13727COG3479FirmicutesStreptococcus100.0100.088.76
PAD5330700CompleteK13727COG3479Firmicutesunknown100.0100.085.39
PAD5155744CompleteK13727COG3479Firmicutesunknown100.096.7484.27
PAD5317884CompleteK13727COG3479Firmicutesunknown100.0100.083.15
PAD5335797CompleteK13727COG3479unknownunknown100.0100.083.15
PAD5394839CompleteK13727COG3479Firmicutesunknown98.3199.4382.86
PAD5194792CompleteK13727COG3479FirmicutesLactobacillus99.4496.7282.49
PAD5384439CompleteK13727COG3479FirmicutesEnterococcus98.3199.4381.71
PAD5392544CompleteK13727COG3479Firmicutesunknown98.3199.4381.71
PAD4941629CompleteK13727COG3479FirmicutesLactobacillus100.092.7179.21
PAD5399203CompleteK13727COG3479unknownunknown98.3199.4380.0
PAD4947768CompleteK13727COG3479FirmicutesLactobacillus100.092.7178.09
PAD5098217CompleteK13727COG3479Firmicutesunknown98.8894.6280.11
PAD5400600CompleteK13727COG3479unknownunknown98.3199.4380.57
PAD5137624CompleteK13727COG3479unknownunknown99.4495.6876.27
PAD4513279CompleteK13727COG3479FirmicutesLactococcus99.4484.6973.45
PAD5782661CompleteK13727COG3479unknownunknown89.8998.1670.0
PAD6091797CompleteK13727COG3479FirmicutesLactococcus84.2799.3472.0
PAD5654283CompleteK13727COG3479Proteobacteriaunknown88.295.2452.8
PAD5680529CompleteK13727COG3479ProteobacteriaEnterobacter87.6495.2153.75
PAD5623369CompleteK13727COG3479ProteobacteriaKlebsiella88.7693.4551.9
PAD5937916Lack 3'-endK13727COG3479ProteobacteriaKlebsiella81.4691.7756.55
PAD5661416CompleteK13727COG3479ProteobacteriaKlebsiella87.0892.2254.19
PAD5679220CompleteK13727COG3479ProteobacteriaEnterobacter88.7694.0153.16
PAD5660991CompleteK13727COG3479ProteobacteriaKlebsiella87.0892.2253.55
PAD5650434CompleteK13727COG3479ProteobacteriaEnterobacter88.295.2452.8
PAD5654274CompleteK13727COG3479ProteobacteriaCitrobacter88.295.2452.17
PAD5627464CompleteK13727COG3479ProteobacteriaCitrobacter88.295.2451.55
PAD5644570CompleteK13727COG3479ProteobacteriaEnterobacter88.295.2450.31
PAD5654490CompleteK13727COG3479ProteobacteriaEnterobacter88.295.2450.31
PAD5649035CompleteK13727COG3479ProteobacteriaEnterobacter87.0891.6750.97
PAD5654192CompleteK13727COG3479ProteobacteriaEnterobacter88.295.2448.45
PAD5616390CompleteK13727COG3479unknownunknown90.4594.6750.31
PAD6530352Lack 3'-endK13727COG3479ProteobacteriaEnterobacter71.3594.0755.91
PAD6485664Lack 5'-endK13727COG3479ProteobacteriaEnterobacter74.72100.048.18
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusKlebsiella0.6611.02e-2354.81e-233
speciesKlebsiella_pneumoniae0.6331.01e-2092.38e-207
orderEnterobacteriales0.5755.03e-1655.94e-163
familyEnterobacteriaceae0.5755.03e-1655.94e-163
classGammaproteobacteria0.5699.63e-1619.09e-159
genusEnterobacter0.5191.32e-1291.04e-127
speciesEnterobacter_cloacae0.5121.85e-1251.25e-123
genusEscherichia0.4422.12e-901.25e-88
phylumProteobacteria0.4381.03e-885.4e-87
speciesEscherichia_coli0.4165.65e-792.67e-77
genusCitrobacter0.3774.77e-642.05e-62
speciesCitrobacter_unclassified0.3731.02e-624.01e-61
speciesCitrobacter_freundii0.3662.28e-608.28e-59
orderLactobacillales0.3663.24e-601.09e-58
classBacilli0.3648.45e-602.66e-58
speciesEscherichia_unclassified0.3512.77e-558.17e-54
speciesKlebsiella_oxytoca0.3321.89e-495.25e-48
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3261.98e-475.19e-46
familyEnterococcaceae0.328.37e-462.08e-44
genusEnterococcus0.3183.15e-457.43e-44
genusFusobacterium0.3091.09e-422.45e-41
familyFusobacteriaceae0.3081.82e-423.83e-41
phylumFusobacteria0.3082.03e-423.83e-41
classFusobacteriia0.3082.03e-423.83e-41
orderFusobacteriales0.3082.03e-423.83e-41
genusWeissella0.3073.38e-426.14e-41
speciesSubdoligranulum_unclassified-0.3067.13e-421.25e-40
genusSubdoligranulum-0.3051.25e-412.11e-40
familyStreptococcaceae0.3043.34e-415.44e-40
genusMegasphaera0.32.5e-403.93e-39
genusVeillonella0.2972.59e-393.94e-38
speciesWeissella_confusa0.2923.68e-385.43e-37
genusLactobacillus0.291.29e-371.85e-36
familyLactobacillaceae0.291.93e-372.68e-36
speciesClostridium_perfringens0.2892.08e-372.81e-36
speciesVeillonella_parvula0.2883.96e-375.19e-36
familyLeuconostocaceae0.2821.2e-351.5e-34
genusStreptococcus0.2821.21e-351.5e-34
speciesRuminococcus_gnavus0.2821.49e-351.8e-34
speciesKlebsiella_unclassified0.2821.63e-351.92e-34
speciesStreptococcus_salivarius0.2812.21e-352.54e-34
speciesLactobacillus_mucosae0.2798.81e-359.9e-34
speciesEubacterium_siraeum-0.2781.47e-341.61e-33
speciesStreptococcus_anginosus0.2764.16e-344.46e-33
genusPantoea0.2765.99e-346.15e-33
speciesPantoea_unclassified0.2765.99e-346.15e-33
speciesLactobacillus_salivarius0.2635.38e-315.4e-30
speciesBacteroides_uniformis-0.2611.34e-301.32e-29
familyOscillospiraceae-0.2595.5e-305.19e-29
genusOscillibacter-0.2595.5e-305.19e-29
genusPseudoflavonifractor-0.2553.37e-293.06e-28
speciesPseudoflavonifractor_capillosus-0.2553.37e-293.06e-28
speciesAnaerotruncus_unclassified-0.2546.12e-295.45e-28
speciesVeillonella_unclassified0.2547.57e-296.62e-28
speciesWeissella_cibaria0.2522.24e-281.92e-27
speciesMegasphaera_micronuciformis0.2513.24e-282.73e-27
speciesEnterococcus_faecium0.2481.47e-271.22e-26
speciesFusobacterium_nucleatum0.2455.04e-274.1e-26
speciesStreptococcus_mitis_oralis_pneumoniae0.2431.45e-261.16e-25
speciesBifidobacterium_dentium0.2422.88e-262.27e-25
speciesOscillibacter_unclassified-0.246.11e-264.73e-25
speciesHaemophilus_parainfluenzae0.246.84e-265.21e-25
orderPasteurellales0.2391.25e-259.22e-25
familyPasteurellaceae0.2391.25e-259.22e-25
speciesClostridium_nexile0.2382.07e-251.5e-24
genusHaemophilus0.2372.37e-251.69e-24
phylumVerrucomicrobia-0.2373.07e-252.01e-24
classVerrucomicrobiae-0.2373.07e-252.01e-24
orderVerrucomicrobiales-0.2373.07e-252.01e-24
familyVerrucomicrobiaceae-0.2373.07e-252.01e-24
genusAkkermansia-0.2373.07e-252.01e-24
speciesAkkermansia_muciniphila-0.2373.07e-252.01e-24
speciesLactobacillus_fermentum0.2356.8e-254.4e-24
speciesVeillonella_atypica0.2358.12e-255.18e-24
familyRikenellaceae-0.236.01e-243.73e-23
genusAlistipes-0.236.01e-243.73e-23
familyBacillales_noname0.2291.24e-237.5e-23
genusGemella0.2291.24e-237.5e-23
speciesVeillonella_dispar0.2272.62e-231.57e-22
genusButyrivibrio-0.2214.87e-222.87e-21
speciesLactococcus_garvieae0.226.11e-223.56e-21
speciesEnterobacter_aerogenes0.226.48e-223.73e-21
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2154.46e-212.54e-20
familyPorphyromonadaceae-0.2156.17e-213.47e-20
genusPrevotella0.2146.9e-213.83e-20
genusBarnesiella-0.2112.67e-201.45e-19
speciesBarnesiella_intestinihominis-0.2112.67e-201.45e-19
genusOdoribacter-0.2088.8e-204.72e-19
speciesMegamonas_unclassified0.2081.11e-195.89e-19
genusMegamonas0.2081.15e-196.03e-19
speciesFusobacterium_mortiferum0.2071.25e-196.48e-19
speciesClostridium_leptum-0.2071.35e-196.93e-19
orderBacillales0.2071.47e-197.46e-19
speciesPrevotella_buccae0.2053.59e-191.8e-18
familyVeillonellaceae0.2044.63e-192.3e-18
speciesStreptococcus_gordonii0.2036.91e-193.4e-18
speciesEnterococcus_faecalis0.2021.04e-185.05e-18
genusSolobacterium0.2021.06e-185.05e-18
speciesSolobacterium_moorei0.2021.06e-185.05e-18
speciesMegasphaera_unclassified0.2011.43e-186.75e-18
familyPeptostreptococcaceae0.22.64e-181.23e-17
speciesPrevotella_copri0.22.87e-181.33e-17
genusLactococcus0.1993.26e-181.49e-17
genusAnaerotruncus-0.1985.41e-182.46e-17
speciesAlistipes_shahii-0.1978.23e-183.7e-17
speciesClostridium_ramosum0.1961.03e-174.59e-17
familyBacteroidales_noname-0.1961.17e-175.07e-17
genusBacteroidales_noname-0.1961.17e-175.07e-17
speciesBacteroidales_bacterium_ph8-0.1961.17e-175.07e-17
speciesStreptococcus_sanguinis0.1961.32e-175.66e-17
speciesRothia_mucilaginosa0.1961.38e-175.87e-17
speciesOdoribacter_splanchnicus-0.1951.53e-176.45e-17
speciesCoprobacillus_unclassified0.1942.99e-171.25e-16
speciesStreptococcus_vestibularis0.1926.14e-172.54e-16
familyMicrococcaceae0.1918.29e-173.4e-16
genusRothia0.1919.53e-173.88e-16
speciesLeuconostoc_lactis0.1882.08e-168.36e-16
genusPeptostreptococcaceae_noname0.1882.09e-168.36e-16
genusCoprobacillus0.1873.49e-161.38e-15
speciesBacteroides_plebeius0.1864.74e-161.86e-15
speciesLactobacillus_gasseri0.1831.52e-155.93e-15
speciesStreptococcus_australis0.1822.13e-158.24e-15
orderActinomycetales0.183.71e-151.42e-14
speciesAlistipes_senegalensis-0.1795.63e-152.14e-14
genusRuminococcaceae_noname-0.1762.08e-147.79e-14
speciesRuminococcaceae_bacterium_D16-0.1762.08e-147.79e-14
speciesStreptococcus_infantarius0.1726.41e-142.38e-13
familyActinomycetaceae0.171.26e-134.65e-13
speciesAggregatibacter_segnis0.1691.93e-137.06e-13
genusActinomyces0.1692.21e-138.02e-13
genusAggregatibacter0.1683e-131.08e-12
speciesButyrivibrio_unclassified-0.1664.62e-131.65e-12
familyMyoviridae0.1631.15e-124.08e-12
genusCoprobacter-0.1631.37e-124.79e-12
speciesCoprobacter_fastidiosus-0.1631.37e-124.79e-12
speciesStreptococcus_parasanguinis0.163.66e-121.27e-11
genusCoprococcus-0.1594.1e-121.41e-11
speciesClostridium_bartlettii0.1594.87e-121.67e-11
familyRuminococcaceae-0.1595.14e-121.75e-11
genusCampylobacter0.1595.19e-121.75e-11
classEpsilonproteobacteria0.1587.18e-122.39e-11
orderCampylobacterales0.1587.18e-122.39e-11
speciesAlistipes_onderdonkii-0.1577.72e-122.55e-11
speciesLactobacillus_oris0.1578.05e-122.64e-11
speciesCampylobacter_concisus0.1578.67e-122.82e-11
speciesKlebsiella_sp_MS_92_30.1579.62e-123.11e-11
speciesLactococcus_lactis0.1561.04e-113.34e-11
familyCampylobacteraceae0.1551.49e-114.75e-11
classNegativicutes0.1551.83e-115.76e-11
orderSelenomonadales0.1551.83e-115.76e-11
speciesRoseburia_hominis-0.1542.2e-116.88e-11
speciesPrevotella_stercorea0.1542.26e-117.02e-11
speciesBifidobacterium_pseudocatenulatum0.1532.9e-118.95e-11
speciesEggerthella_unclassified0.1523.82e-111.17e-10
speciesLactobacillus_vaginalis0.156.75e-112.06e-10
genusLeuconostoc0.1481.13e-103.42e-10
speciesAlistipes_putredinis-0.1481.19e-103.58e-10
speciesAlistipes_indistinctus-0.1471.47e-104.39e-10
genusEggerthella0.1471.49e-104.42e-10
speciesMethanobrevibacter_smithii-0.1471.51e-104.45e-10
genusPeptostreptococcus0.1471.6e-104.69e-10
speciesLachnospiraceae_bacterium_2_1_58FAA0.1462.4e-106.99e-10
genusPyramidobacter0.1462.44e-107.02e-10
speciesPyramidobacter_piscolens0.1462.44e-107.02e-10
speciesFusobacterium_ulcerans0.1453.04e-108.7e-10
speciesAlistipes_finegoldii-0.1453.29e-109.35e-10
speciesClostridium_bolteae0.1435.86e-101.66e-09
classMethanobacteria-0.1419.07e-102.52e-09
orderMethanobacteriales-0.1419.07e-102.52e-09
familyMethanobacteriaceae-0.1419.07e-102.52e-09
speciesLactobacillus_plantarum0.1419.37e-102.59e-09
speciesBifidobacterium_adolescentis-0.141.12e-093.07e-09
speciesSutterella_wadsworthensis-0.141.35e-093.68e-09
genusMethanobrevibacter-0.1391.5e-094.07e-09
speciesLactobacillus_crispatus0.1391.58e-094.24e-09
speciesBacteroides_stercoris0.1391.58e-094.24e-09
speciesStreptococcus_pasteurianus0.1391.77e-094.72e-09
phylumSynergistetes0.1382.14e-095.58e-09
classSynergistia0.1382.14e-095.58e-09
orderSynergistales0.1382.14e-095.58e-09
familySynergistaceae0.1382.14e-095.58e-09
speciesAcidaminococcus_intestini0.1382.19e-095.68e-09
phylumEuryarchaeota-0.1382.33e-096.01e-09
speciesMegamonas_hypermegale0.1372.5e-096.41e-09
speciesMitsuokella_unclassified-0.1372.91e-097.42e-09
speciesFusobacterium_varium0.1373.03e-097.67e-09
genusSutterella-0.1373.04e-097.67e-09
orderClostridiales-0.1354.18e-091.05e-08
classClostridia-0.1354.19e-091.05e-08
speciesCoprococcus_catus-0.1354.78e-091.19e-08
speciesEubacterium_rectale-0.1355.13e-091.27e-08
genusMorganella0.1346.6e-091.61e-08
speciesMorganella_morganii0.1346.6e-091.61e-08
genusProteus0.1338.38e-092.04e-08
genusParabacteroides-0.1338.52e-092.06e-08
speciesPeptostreptococcus_stomatis0.1329.05e-092.18e-08
speciesMegamonas_rupellensis0.1329.5e-092.28e-08
genusEubacterium-0.1292.29e-085.46e-08
familyEubacteriaceae-0.1292.31e-085.48e-08
genusMitsuokella-0.1282.79e-086.58e-08
speciesClostridium_symbiosum0.1282.85e-086.69e-08
speciesButyrivibrio_crossotus-0.1282.91e-086.8e-08
speciesBacteroides_cellulosilyticus-0.1273.59e-088.35e-08
speciesLachnospiraceae_bacterium_6_1_63FAA0.1264.7e-081.09e-07
genusActinobacillus0.1255.24e-081.2e-07
speciesActinobacillus_unclassified0.1255.24e-081.2e-07
speciesC2likevirus_unclassified-0.1255.68e-081.3e-07
speciesMegamonas_funiformis0.1256.13e-081.39e-07
speciesStreptococcus_mutans0.1239.03e-082.04e-07
genusClostridium0.1211.4e-073.15e-07
speciesEubacterium_ramulus-0.1211.42e-073.18e-07
genusC2likevirus-0.121.96e-074.36e-07
speciesMegasphaera_elsdenii0.122.07e-074.59e-07
familyClostridiaceae0.1192.35e-075.18e-07
speciesCoprococcus_comes-0.1192.6e-075.71e-07
speciesProteus_mirabilis0.1182.9e-076.34e-07
speciesOscillibacter_sp_KLE_1745-0.1182.98e-076.48e-07
speciesEubacterium_hallii-0.1173.75e-078.12e-07
speciesDesulfovibrio_desulfuricans-0.1164.86e-071.05e-06
speciesBacteroides_coprocola0.1165.36e-071.15e-06
speciesLactobacillus_sanfranciscensis0.1139.52e-072.03e-06
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1121.16e-062.47e-06
speciesHaemophilus_sputorum0.1111.67e-063.53e-06
speciesBifidobacterium_breve0.111.76e-063.71e-06
speciesLactobacillus_rhamnosus0.1092.08e-064.36e-06
familyPrevotellaceae0.1092.22e-064.64e-06
speciesAlistipes_sp_HGB5-0.1083.16e-066.57e-06
speciesBacteroides_fragilis0.1073.78e-067.83e-06
speciesClostridiales_bacterium_1_7_47FAA0.1064.29e-068.84e-06
speciesRuminococcus_lactaris-0.1064.5e-069.23e-06
speciesCoprococcus_sp_ART55_1-0.1054.95e-061.01e-05
speciesOscillibacter_sp_KLE_1728-0.1046.67e-061.36e-05
speciesDorea_longicatena-0.1046.9e-061.4e-05
genusAcidaminococcus0.1047.01e-061.41e-05
speciesStreptococcus_lutetiensis0.1037.43e-061.49e-05
speciesEnterobacteria_phage_HK5440.1029.02e-061.8e-05
genusMyoviridae_noname0.1011.2e-052.39e-05
speciesClostridium_hathewayi0.1011.21e-052.4e-05
speciesHoldemania_filiformis-0.1011.28e-052.53e-05
genusBlautia0.1011.32e-052.6e-05
genusHoldemania-0.11.41e-052.76e-05
speciesHaemophilus_paraphrohaemolyticus0.11.6e-053.12e-05
speciesEubacterium_ventriosum-0.0972.49e-054.84e-05
speciesErysipelotrichaceae_bacterium_21_3-0.0962.99e-055.78e-05
phylumBacteroidetes-0.0963.52e-056.78e-05
classBacteroidia-0.0953.55e-056.78e-05
orderBacteroidales-0.0953.55e-056.78e-05
genusDesulfovibrio-0.0935.31e-050.000101
speciesAcidaminococcus_fermentans0.0918.74e-050.000165
speciesLactobacillus_delbrueckii0.0918.77e-050.000165
speciesGemella_morbillorum0.0918.79e-050.000165
genusTunalikevirus0.0890.0001110.000208
speciesAlistipes_sp_AP11-0.0890.0001120.000208
genusFlavonifractor0.0890.0001130.000208
speciesFlavonifractor_plautii0.0890.0001130.000208
speciesBacteroides_finegoldii0.0890.0001130.000208
speciesBacteroides_dorei-0.0890.0001230.000226
speciesOdoribacter_unclassified-0.0880.0001510.000276
speciesBifidobacterium_bifidum0.0870.0001780.000324
speciesLachnospiraceae_bacterium_1_1_57FAA0.0860.0001850.000336
genusDorea-0.0860.0002020.000365
genusAdlercreutzia-0.0860.000210.000377
speciesAdlercreutzia_equolifaciens-0.0860.000210.000377
speciesBacteroides_pectinophilus-0.0850.0002380.000426
speciesRoseburia_unclassified-0.0850.0002390.000426
speciesRuminococcus_champanellensis-0.0840.0002710.000481
familyClostridiales_Family_XI_Incertae_Sedis0.0840.0002720.000481
speciesBacteroides_sp_3_1_190.0840.0002760.000486
speciesParaprevotella_xylaniphila-0.0840.0002910.000511
speciesLactobacillus_amylovorus0.0830.0003050.000533
genusLambdalikevirus0.0830.0003180.000554
speciesAnaerostipes_unclassified0.0830.0003420.000593
speciesKlebsiella_phage_KP360.0820.0003670.000635
speciesCoprococcus_eutactus-0.0810.0004410.00076
familySutterellaceae-0.0810.0004790.000822
speciesClostridium_citroniae0.080.0005390.000922
speciesCollinsella_tanakaei0.080.0005440.000927
orderBurkholderiales-0.0790.0006340.00108
speciesLactobacillus_reuteri0.0780.0007870.00133
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0770.0008770.00148
speciesParaprevotella_clara-0.0770.0008930.0015
speciesMethanobrevibacter_unclassified-0.0760.001050.00176
classBetaproteobacteria-0.0750.001110.00185
genusOxalobacter-0.0750.001190.00197
speciesOxalobacter_formigenes-0.0750.001190.00197
familyOxalobacteraceae-0.0740.001370.00226
speciesBlautia_producta0.0740.001410.00232
speciesParabacteroides_sp_D13-0.0730.001550.00254
speciesCollinsella_aerofaciens-0.0730.001560.00255
speciesParaprevotella_unclassified-0.0680.003380.0055
speciesBlautia_hydrogenotrophica-0.0680.003420.00555
speciesBacteroides_intestinalis0.0670.003780.00611
genusCollinsella-0.0660.004390.00707
speciesAnaerostipes_hadrus-0.0660.004550.0073
genusParaprevotella-0.0650.004850.00776
speciesLachnospiraceae_bacterium_2_1_46FAA0.0650.005090.00812
speciesParvimonas_unclassified0.0630.006050.00961
genusParvimonas0.0630.006120.00969
familySiphoviridae-0.0630.006510.0103
speciesLachnospiraceae_bacterium_8_1_57FAA-0.060.009240.0145
familyBacteroidaceae-0.0590.01020.0159
genusBacteroides-0.0590.01020.0159
speciesEubacterium_cylindroides-0.0590.01120.0174
classDeltaproteobacteria-0.0580.01160.0179
orderDesulfovibrionales-0.0580.01160.0179
familyDesulfovibrionaceae-0.0580.01160.0179
speciesLactococcus_phage_P680-0.0570.01310.0201
speciesLachnospiraceae_bacterium_5_1_57FAA0.0570.01360.0208
speciesEggerthella_lenta0.0570.01370.0209
speciesHoldemania_unclassified-0.0570.01390.0212
genusButyricimonas-0.0560.01520.023
speciesButyricimonas_synergistica-0.0560.01520.023
speciesPeptostreptococcaceae_noname_unclassified0.0560.01620.0244
genusClostridiales_noname0.0550.01720.0259
speciesStreptococcus_thermophilus-0.0550.01740.026
speciesParabacteroides_merdae-0.0550.01740.026
familyViruses_noname0.0550.01760.0261
genusViruses_noname0.0550.01760.0261
speciesRuminococcus_sp_JC3040.0550.01820.0269
speciesBacteroides_sp_1_1_6-0.0540.01880.0277
speciesLachnospiraceae_bacterium_1_4_56FAA0.0540.01910.0281
genusRuminococcus-0.0540.01920.0281
speciesPorphyromonas_uenonis0.0530.02110.0308
speciesEubacterium_limosum0.0520.02560.0373
speciesDorea_unclassified-0.0520.02570.0373
speciesBifidobacterium_catenulatum-0.050.03170.0459
speciesClostridium_sp_L2_50-0.050.03190.046
speciesBacteroides_salanitronis-0.050.0320.046
classErysipelotrichia0.0490.03250.0463
orderErysipelotrichales0.0490.03250.0463
familyErysipelotrichaceae0.0490.03250.0463
speciesBacteroides_massiliensis0.0490.03290.0468
speciesLactobacillus_casei_paracasei0.0490.03340.0473
genusSlackia0.0490.03370.0476
speciesDialister_invisus-0.0490.03430.0483
familyStaphylococcaceae0.0490.0350.0492
speciesRuminococcus_callidus0.0490.03550.0497
speciesDorea_formicigenerans-0.0480.03680.0514
genusAcidaminococcaceae_unclassified-0.0480.0370.0515
speciesBacteroides_eggerthii0.0480.03750.0521
speciesBacteroides_coprophilus0.0480.03850.0533
speciesBacteroides_barnesiae-0.0470.04280.0591
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0460.04550.0626
speciesBacteroides_sp_2_1_22-0.0440.0590.081
speciesAlistipes_unclassified-0.0430.06180.0845
speciesLactococcus_phage_bIL670.0430.06340.0865
speciesDesulfovibrio_piger-0.0420.06720.0914
orderBifidobacteriales0.0420.06920.0935
familyBifidobacteriaceae0.0420.06920.0935
speciesBacteroides_fluxus0.0420.06930.0935
genusPeptoniphilus0.0420.06970.0937
speciesCollinsella_intestinalis0.0410.07360.0987
speciesBacteroides_oleiciplenus0.0410.0740.0989
speciesBacteroides_thetaiotaomicron0.0410.07520.1
speciesDialister_succinatiphilus0.040.08540.114
speciesCoriobacteriaceae_bacterium_phI-0.040.08670.115
speciesBacteroides_salyersiae0.0390.08850.117
speciesBacteroides_vulgatus-0.0390.09250.122
speciesBacteroides_caccae-0.0390.09370.123
genusCatenibacterium-0.0390.09380.123
speciesCatenibacterium_mitsuokai-0.0390.09380.123
genusBifidobacterium0.0390.09570.125
genusStaphylococcus0.0380.1030.134
speciesClostridium_sp_KLE_1755-0.0380.1040.135
genusBilophila-0.0370.1060.137
genusErysipelotrichaceae_noname0.0370.1070.138
speciesBilophila_unclassified-0.0370.1090.14
genusCoriobacteriaceae_noname-0.0370.1120.144
phylumActinobacteria0.0370.1130.144
classActinobacteria0.0370.1130.144
speciesEubacterium_sp_3_1_31-0.0370.1130.144
speciesRuminococcus_obeum-0.0370.1140.145
genusPhascolarctobacterium-0.0360.1160.146
speciesPhascolarctobacterium_succinatutens-0.0360.1160.146
speciesRuminococcus_bromii-0.0360.120.151
speciesBacteroides_sp_4_3_47FAA0.0360.1210.152
familySuccinivibrionaceae-0.0350.1260.158
speciesClostridium_sp_ATCC_BAA_4420.0350.1270.159
speciesParabacteroides_unclassified-0.0350.1310.163
speciesErysipelotrichaceae_bacterium_2_2_44A0.0350.1320.164
speciesBacteroides_nordii0.0330.1520.188
speciesClostridium_clostridioforme0.0330.160.198
speciesBacteroides_xylanisolvens0.0320.1650.203
genusClostridiaceae_noname-0.0320.1670.205
speciesClostridiaceae_bacterium_JC118-0.0320.1670.205
genusSuccinatimonas-0.0320.170.207
speciesSuccinatimonas_hippei-0.0320.170.207
speciesRuminococcus_torques-0.0310.1740.212
speciesCollinsella_unclassified-0.0310.1760.214
speciesErysipelotrichaceae_bacterium_6_1_45-0.0310.1790.217
orderAeromonadales0.0310.1840.222
speciesErysipelotrichaceae_bacterium_3_1_530.0310.1850.223
genusDialister-0.030.1890.227
speciesEggerthella_sp_1_3_56FAA0.030.1930.231
speciesPropionibacterium_freudenreichii-0.030.1950.232
speciesRuminococcus_sp_5_1_39BFAA-0.030.1950.232
genusSiphoviridae_noname-0.030.1990.237
speciesTuricibacter_sanguinis0.030.20.237
phylumFirmicutes-0.030.2020.239
speciesBilophila_wadsworthia-0.0290.2030.24
speciesBifidobacterium_angulatum-0.0290.2040.24
speciesLactococcus_phage_936_sensu_lato-0.0290.2050.241
speciesBacteroides_faecis0.0290.2130.249
speciesMitsuokella_multacida0.0290.2160.252
genusMethanosphaera-0.0280.2210.257
speciesMethanosphaera_stadtmanae-0.0280.2210.257
speciesOdoribacter_laneus-0.0280.2250.261
familyLachnospiraceae-0.0270.2490.288
orderCoriobacteriales-0.0260.2620.302
familyCoriobacteriaceae-0.0260.2620.302
familyPropionibacteriaceae-0.0260.2640.303
speciesBacteroides_ovatus-0.0250.2840.325
speciesClostridium_spiroforme-0.0250.2860.327
speciesLactobacillus_acidophilus-0.0240.3090.352
speciesEubacterium_eligens-0.0230.3140.357
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0230.3190.362
genusGordonibacter-0.0220.3330.375
speciesLactococcus_phage_phi7-0.0220.3330.375
speciesGordonibacter_pamelaeae-0.0220.3330.375
orderPseudomonadales0.0220.3460.389
speciesHoldemania_sp_AP20.0210.3530.396
speciesCoprobacillus_sp_D60.0210.3710.415
familyPodoviridae0.020.3820.426
speciesEubacterium_biforme-0.020.3860.43
speciesParabacteroides_goldsteinii0.020.3990.443
genusFaecalibacterium-0.0190.4210.465
speciesFaecalibacterium_prausnitzii-0.0190.4210.465
genusPorphyromonas0.0180.4310.475
genusAnaerostipes-0.0180.4350.479
genusButyricicoccus0.0180.4390.48
speciesButyricicoccus_pullicaecorum0.0180.4390.48
genusBurkholderiales_noname0.0180.440.48
speciesBurkholderiales_bacterium_1_1_470.0180.440.48
speciesAcidaminococcus_unclassified0.0180.4450.484
speciesRoseburia_inulinivorans0.0170.4580.497
speciesStreptococcus_phage_Sfi210.0170.4640.502
orderViruses_noname0.0160.4880.527
genusRoseburia-0.0160.490.528
familyBurkholderiales_noname0.0160.4920.529
phylumViruses_noname0.0150.5180.554
classViruses_noname0.0150.5180.554
speciesPrevotella_bivia0.0150.5280.564
speciesTuricibacter_unclassified0.0140.5370.572
speciesPeptostreptococcus_anaerobius0.0140.5520.585
speciesBacteroides_clarus-0.0140.5520.585
speciesClostridium_asparagiforme-0.0140.5540.586
speciesParabacteroides_sp_20_30.0130.5660.598
speciesSlackia_piriformis0.0130.5720.603
speciesRoseburia_intestinalis-0.0120.5910.621
speciesBifidobacterium_longum0.0120.6090.639
speciesEubacterium_dolichum-0.0120.6160.645
genusOlsenella0.0110.6310.659
speciesOlsenella_unclassified-0.0110.6360.663
speciesSutterella_parvirubra0.010.6590.685
speciesPorphyromonas_asaccharolytica0.010.6710.696
speciesLachnospiraceae_bacterium_5_1_63FAA-0.010.6790.702
genusTuricibacter0.010.680.702
genusPropionibacterium0.0090.7040.726
speciesLactococcus_phage_jm2-0.0080.7350.756
speciesBifidobacterium_animalis0.0070.750.77
speciesCoprobacillus_sp_29_10.0070.7530.771
speciesAnaerotruncus_colihominis0.0060.7990.816
genusParasutterella0.0060.8050.819
speciesParasutterella_excrementihominis0.0060.8050.819
familyAcidaminococcaceae0.0050.8430.856
genusLachnospiraceae_noname-0.0040.8580.869
speciesParabacteroides_johnsonii0.0030.8870.896
speciesLactobacillus_ruminis-0.0020.9230.931
orderCaudovirales0.0010.9660.972
familyClostridiales_noname0.0010.9760.978
speciesParabacteroides_distasonis0.0010.9760.978
genusSutterellaceae_unclassified0.00.9880.988
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01952040780810.001802820865672.5629887428e-1012084.05791
Type II diabetesDenmark752770.0007846998107710.0008224282663250.0443443721233690222.6243
Colorectal cancerAustria64350.01100870296760.00715871916270.114698884898556418.8253
Type II diabetesChina1831850.01271900789050.007109174057560.1420593368941131037.3773
Crohns diseaseSpain17660.03018351274790.0009421519628660.1820141626811637054.4306
Type II diabetesSweden53920.002531756017850.001450703729320.361085571951200240.6434
Ulcerative colitisSpain78660.001414814339330.0009421519628660.4088798802721697155.984
ObesityDenmark1691230.0008988367956960.002951192341460.6189338990122206172.5428
Rheumatoid arthritisChina127980.01160145847690.009589751232610.7397872404242344978.1972
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382