MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-12 13:57:46 PST
Job id & description: 2174, Diaminopropionate Ammonia Lyase
Query type: protein
Count queries & homologs: 1, 230
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
ygeX1626499CompleteK01751COG1171Firmicutesunknown99.5100.071.32
ygeX1517354CompleteK01751COG1171unknownunknown99.596.8671.07
ygeX1605239CompleteK01751COG1171FirmicutesClostridium100.0100.070.54
ygeX1447677CompleteK01751COG1171FirmicutesPseudoflavonifractor99.595.0262.78
ygeX1602285CompleteK01751COG1171FirmicutesAnaerotruncus99.0198.7662.5
ygeX1592714CompleteK01751COG1171FirmicutesPseudoflavonifractor99.7599.2660.79
ygeX1488833CompleteK01751COG1171FirmicutesPseudoflavonifractor99.596.1662.03
ygeX1543616CompleteK01751COG1171FirmicutesPseudoflavonifractor99.597.5761.79
ygeX1629005CompleteK01751COG1171FirmicutesPseudoflavonifractor99.5100.062.53
ygeX1555808CompleteK01751COG1171FirmicutesPseudoflavonifractor99.598.0461.69
ygeX1620563CompleteK01751COG1171unknownunknown98.7699.063.0
ygeX1616661CompleteK01751COG1171FirmicutesClostridium99.0199.2563.75
ygeX1558808CompleteK01751COG1171FirmicutesPseudoflavonifractor99.598.0461.44
ygeX1607177CompleteK01751COG1171FirmicutesEubacterium99.0199.0161.75
ygeX1619262CompleteK01751COG1171Firmicutesunknown99.0199.2564.0
ygeX1697222CompleteK01751COG1171Firmicutesunknown96.0398.4861.86
ygeX1404569CompleteK01751COG1171unknownunknown99.0193.4461.75
ygeX1599508CompleteK01751COG1171unknownunknown99.0198.7661.25
ygeX1599782CompleteK01751COG1171Firmicutesunknown99.599.2661.44
ygeX1536614CompleteK01751COG1171FirmicutesPseudoflavonifractor99.597.5761.54
ygeX1600636CompleteK01751COG1171Firmicutesunknown99.599.2661.04
ygeX1598633CompleteK01751COG1171FirmicutesPseudoflavonifractor99.599.2661.54
ygeX1679307CompleteK01751COG1171unknownunknown96.0396.9763.82
ygeX1407153CompleteK01751COG1171unknownunknown99.0193.4461.5
ygeX1622371CompleteK01751COG1171FirmicutesClostridium99.0199.2562.75
ygeX1640501CompleteK01751COG1171unknownunknown98.2698.063.57
ygeX1598762CompleteK01751COG1171FirmicutesPseudoflavonifractor99.599.2661.04
ygeX1532720CompleteK01751COG1171unknownunknown98.7696.662.91
ygeX1372625CompleteK01751COG1171Firmicutesunknown99.0192.5863.0
ygeX1531292CompleteK01751COG1171unknownunknown98.7696.662.66
ygeX1622668CompleteK01751COG1171Firmicutesunknown99.0199.2562.25
ygeX1662542CompleteK01751COG1171unknownunknown95.7896.2264.25
ygeX1600153CompleteK01751COG1171Firmicutesunknown99.0198.7662.5
ygeX1615230CompleteK01751COG1171Firmicutesunknown99.0199.2563.25
ygeX1418711CompleteK01751COG1171FirmicutesPseudoflavonifractor99.594.1360.05
ygeX1599379CompleteK01751COG1171FirmicutesPseudoflavonifractor99.599.2659.45
ygeX1603187CompleteK01751COG1171unknownunknown99.599.2659.31
ygeX1649161Lack 5'-endK01751COG1171unknownunknown98.5198.562.16
ygeX1631555CompleteK01751COG1171Firmicutesunknown98.0198.561.96
ygeX1625547CompleteK01751COG1171Firmicutesunknown98.0198.562.22
ygeX1648322CompleteK01751COG1171FirmicutesClostridium95.7895.7463.47
ygeX1615758CompleteK01751COG1171unknownunknown94.0493.7864.74
ygeX1663953CompleteK01751COG1171unknownunknown98.5198.9961.9
ygeX2087032Lack 3'-endK01751COG1171unknownunknown87.5998.8868.56
ygeX1632660CompleteK01751COG1171FirmicutesClostridium95.5396.2662.18
ygeX1610701CompleteK01751COG1171FirmicutesPseudoflavonifractor100.0100.059.51
ygeX1569590CompleteK01751COG1171ActinobacteriaAtopobium99.598.2859.2
ygeX1602992CompleteK01751COG1171unknownunknown99.599.2659.06
ygeX1601125CompleteK01751COG1171unknownunknown98.7698.5161.65
ygeX1603462CompleteK01751COG1171unknownunknown98.7698.5161.75
ygeX1597648CompleteK01751COG1171ActinobacteriaCollinsella99.599.2659.06
ygeX1624131CompleteK01751COG1171FirmicutesBlautia98.5199.061.4
ygeX1618961CompleteK01751COG1171Firmicutesunknown99.0199.2561.0
ygeX1621582CompleteK01751COG1171unknownunknown99.0199.2560.25
ygeX1515948CompleteK01751COG1171FirmicutesClostridium98.2695.4162.31
ygeX1764928CompleteK01751COG1171unknownunknown95.5398.7162.79
ygeX1629605CompleteK01751COG1171FirmicutesAnaerostipes98.2698.7560.2
ygeX1632664CompleteK01751COG1171FirmicutesClostridium98.0198.561.46
ygeX1664774CompleteK01751COG1171FirmicutesEnterococcus98.0199.561.21
ygeX1457806Lack 5'-endK01751COG1171FirmicutesRuminococcus99.595.2559.7
ygeX1239116CompleteK01751COG1171FirmicutesAcidaminococcus96.2885.5262.11
ygeX1560979CompleteK01751COG1171FirmicutesBlautia99.598.0460.2
ygeX1557737CompleteK01751COG1171FirmicutesRuminococcus99.598.0458.96
ygeX1525294Lack 5'-endK01751COG1171FirmicutesBlautia99.597.0959.95
ygeX1557388CompleteK01751COG1171FirmicutesBlautia99.598.0459.7
ygeX1624635CompleteK01751COG1171FirmicutesBlautia98.0198.563.22
ygeX1556473CompleteK01751COG1171FirmicutesBlautia99.598.0459.7
ygeX1409422CompleteK01751COG1171FirmicutesAcidaminococcus96.2889.9361.86
ygeX1499880Lack 5'-endK01751COG1171Firmicutesunknown99.596.3959.45
ygeX1328694CompleteK01751COG1171FirmicutesCoprococcus98.2690.3961.71
ygeX1629699CompleteK01751COG1171Firmicutesunknown98.5199.061.4
ygeX1553264CompleteK01751COG1171Firmicutesunknown99.598.0458.71
ygeX1551345Lack 5'-endK01751COG1171Firmicutesunknown99.597.859.2
ygeX1658463CompleteK01751COG1171FirmicutesAcidaminococcus96.2896.4861.86
ygeX1449332CompleteK01751COG1171unknownunknown99.595.0260.05
ygeX1574762CompleteK01751COG1171Firmicutesunknown99.598.5358.46
ygeX1291620CompleteK01751COG1171FirmicutesBlautia99.590.7260.2
ygeX1576697CompleteK01751COG1171unknownunknown99.598.5358.21
ygeX1586546CompleteK01751COG1171FirmicutesClostridium97.0296.3158.82
ygeX1557877CompleteK01751COG1171Firmicutesunknown99.598.0459.45
ygeX1619544CompleteK01751COG1171unknownunknown99.2699.559.2
ygeX1622245CompleteK01751COG1171unknownunknown99.0198.0160.0
ygeX1602451CompleteK01751COG1171ActinobacteriaCollinsella99.599.2658.06
ygeX1612812CompleteK01751COG1171FirmicutesMegasphaera99.0199.0159.25
ygeX1619010CompleteK01751COG1171FirmicutesMegasphaera99.0199.2558.75
ygeX1606775CompleteK01751COG1171FirmicutesMegasphaera99.0199.0159.25
ygeX1629394CompleteK01751COG1171Firmicutesunknown98.0198.560.45
ygeX1629917CompleteK01751COG1171Firmicutesunknown98.2698.7561.56
ygeX1556956CompleteK01751COG1171Firmicutesunknown99.598.0458.46
ygeX1651722CompleteK01751COG1171Firmicutesunknown98.5199.558.04
ygeX1526206Lack 5'-endK01751COG1171unknownunknown99.0196.6158.35
ygeX1621576CompleteK01751COG1171unknownunknown98.2698.7660.9
ygeX1627335CompleteK01751COG1171Firmicutesunknown98.2698.7561.06
ygeX1688465CompleteK01751COG1171unknownunknown94.7995.760.21
ygeX1555891CompleteK01751COG1171Firmicutesunknown99.598.0458.21
ygeX1601638CompleteK01751COG1171unknownunknown96.5396.2958.61
ygeX1629310CompleteK01751COG1171Firmicutesunknown98.5199.060.4
ygeX1558360CompleteK01751COG1171Firmicutesunknown98.2696.8261.06
ygeX1568113CompleteK01751COG1171unknownunknown99.0198.0459.06
ygeX1492372CompleteK01751COG1171Firmicutesunknown99.0192.3360.5
ygeX1611204CompleteK01751COG1171FirmicutesVeillonella98.7699.2658.21
ygeX1628842CompleteK01751COG1171unknownunknown98.0198.7560.25
ygeX1533667Lack 5'-endK01751COG1171unknownunknown98.7697.3357.61
ygeX1587147CompleteK01751COG1171unknownunknown95.5393.8458.18
ygeX1490559CompleteK01751COG1171Fusobacteriaunknown98.7696.1656.86
ygeX1585641CompleteK01751COG1171Fusobacteriaunknown98.5198.5257.25
ygeX1611646CompleteK01751COG1171FirmicutesVeillonella98.5199.0157.11
ygeX1632599CompleteK01751COG1171Firmicutesunknown94.5494.2658.64
ygeX1612656CompleteK01751COG1171FirmicutesVeillonella98.5199.0157.11
ygeX1568150Lack 5'-endK01751COG1171Fusobacteriaunknown98.5198.0456.5
ygeX2033632Lack 5'-endK01751COG1171Firmicutesunknown88.0998.6163.59
ygeX1584191CompleteK01751COG1171Fusobacteriaunknown98.5198.5256.25
ygeX1585755CompleteK01751COG1171Fusobacteriaunknown98.5198.5256.5
ygeX1598636CompleteK01751COG1171unknownunknown95.2995.0555.99
ygeX1637945CompleteK01751COG1171unknownunknown99.7599.556.97
ygeX1608565CompleteK01751COG1171FirmicutesVeillonella98.7699.2657.21
ygeX1671625CompleteK01751COG1171FirmicutesOribacterium98.0198.4958.84
ygeX1635078CompleteK01751COG1171unknownunknown99.2698.7553.75
ygeX1491212CompleteK01751COG1171unknownunknown99.0194.4855.39
ygeX1162250CompleteK01751COG1171unknownunknown98.5185.8755.42
ygeX1665284CompleteK01751COG1171Spirochaetesunknown97.5297.9856.71
ygeX1499520CompleteK01751COG1171FusobacteriaFusobacterium98.5196.1556.0
ygeX1596250CompleteK01751COG1171ProteobacteriaCitrobacter97.5296.357.0
ygeX2151707Lack 5'-endK01751COG1171FirmicutesBlautia85.8699.1464.94
ygeX1657685CompleteK01751COG1171unknownunknown96.2897.2456.7
ygeX1459210CompleteK01751COG1171FusobacteriaFusobacterium98.5195.0155.0
ygeX2096964Lack 5'-endK01751COG1171unknownunknown87.199.1563.92
ygeX1620222CompleteK01751COG1171FusobacteriaFusobacterium93.393.5359.15
ygeX1594005CompleteK01751COG1171ProteobacteriaProvidencia99.598.5254.98
ygeX1383700CompleteK01751COG1171FirmicutesAnaerococcus95.7890.058.25
ygeX1256770CompleteK01751COG1171ProteobacteriaBilophila95.0485.6857.7
ygeX1538615CompleteK01751COG1171FirmicutesClostridium99.0196.1155.61
ygeX1359690CompleteK01751COG1171unknownunknown95.5388.9154.29
ygeX1668378CompleteK01751COG1171unknownunknown95.2996.7356.77
ygeX2232664Lack both endsK01751COG1171unknownunknown81.3994.1964.94
ygeX1641040Lack 5'-endK01751COG1171FirmicutesClostridium99.0198.7554.86
ygeX1604389CompleteK01751COG1171unknownunknown98.7697.7755.28
ygeX1648685CompleteK01751COG1171unknownunknown98.2699.055.3
ygeX1515605CompleteK01751COG1171FirmicutesClostridium99.0195.4154.61
ygeX1621311CompleteK01751COG1171FusobacteriaFusobacterium99.0199.055.25
ygeX1733435CompleteK01751COG1171unknownunknown93.395.956.65
ygeX1641032CompleteK01751COG1171unknownunknown99.599.2553.12
ygeX1643586CompleteK01751COG1171unknownunknown95.2995.4954.69
ygeX1645887CompleteK01751COG1171unknownunknown95.2995.4954.69
ygeX1643151CompleteK01751COG1171unknownunknown95.2995.4954.17
ygeX1643995CompleteK01751COG1171unknownunknown95.2995.4954.17
ygeX1329253CompleteK01751COG1171FirmicutesClostridium94.2987.1954.33
ygeX1650469CompleteK01751COG1171unknownunknown94.5495.2454.05
ygeX1678734CompleteK01751COG1171unknownunknown96.5397.9853.98
ygeX1639023CompleteK01751COG1171unknownunknown92.892.555.35
ygeX1645999CompleteK01751COG1171unknownunknown95.2995.4953.91
ygeX1678831CompleteK01751COG1171unknownunknown91.8192.4256.22
ygeX1540155Lack 5'-endK01751COG1171unknownunknown95.2992.9453.77
ygeX1605537CompleteK01751COG1171ProteobacteriaKlebsiella94.7995.0452.74
ygeX2187767Lack 5'-endK01751COG1171FusobacteriaFusobacterium85.1199.1458.43
ygeX1725352CompleteK01751COG1171unknownunknown93.0592.8454.67
ygeX1616791CompleteK01751COG1171unknownunknown92.892.0454.55
ygeX2544571Lack both endsK01751COG1171FirmicutesPseudoflavonifractor79.1699.6961.25
ygeX1549767CompleteK01751COG1171FusobacteriaFusobacterium95.0493.6651.82
ygeX1140758CompleteK01751COG1171unknownunknown98.7685.3153.02
ygeX1786134CompleteK01751COG1171unknownunknown93.0591.4353.99
ygeX2414992Lack 5'-endK01751COG1171FirmicutesAnaerostipes80.8999.3962.08
ygeX2402234Lack both endsK01751COG1171Fusobacteriaunknown80.497.8960.19
ygeX1688220CompleteK01751COG1171Firmicutesunknown95.2997.2251.56
ygeX1682466CompleteK01751COG1171FirmicutesAcidaminococcus92.5691.3954.96
ygeX1904654Lack 3'-endK01751COG1171unknownunknown88.8397.3352.47
ygeX1746552CompleteK01751COG1171unknownunknown91.8192.0353.51
ygeX1758414CompleteK01751COG1171FirmicutesAcidaminococcus92.5693.0454.16
ygeX1651740CompleteK01751COG1171Proteobacteriaunknown92.892.2351.87
ygeX1608417CompleteK01751COG1171FirmicutesPhascolarctobacterium95.2993.854.17
ygeX1611221CompleteK01751COG1171FirmicutesPhascolarctobacterium95.2993.854.95
ygeX1747228CompleteK01751COG1171unknownunknown91.8192.0352.7
ygeX1639231CompleteK01751COG1171unknownunknown91.8191.7551.62
ygeX1568923CompleteK01751COG1171FirmicutesPhascolarctobacterium96.2893.6354.38
ygeX1436909Lack 5'-endK01751COG1171FirmicutesPhascolarctobacterium94.7988.8954.71
ygeX1661597CompleteK01751COG1171ProteobacteriaEscherichia94.2993.7251.05
ygeX1602453CompleteK01751COG1171unknownunknown97.2796.0451.02
ygeX1652217CompleteK01751COG1171ProteobacteriaEscherichia94.2993.7250.79
ygeX1640754CompleteK01751COG1171unknownunknown99.599.2549.63
ygeX1637218CompleteK01751COG1171unknownunknown99.599.2550.5
ygeX2596677Lack 3'-endK01751COG1171unknownunknown73.793.9961.28
ygeX1637852CompleteK01751COG1171unknownunknown91.8191.7551.89
ygeX1649855CompleteK01751COG1171ProteobacteriaEnterobacter93.893.2350.26
ygeX1465598CompleteK01751COG1171unknownunknown94.0490.4850.66
ygeX1635046CompleteK01751COG1171unknownunknown91.8191.7552.16
ygeX1694679CompleteK01751COG1171FirmicutesClostridium90.8291.6251.37
ygeX1314728CompleteK01751COG1171unknownunknown96.2888.3850.38
ygeX3063955Lack both endsK01751COG1171unknownunknown70.72100.063.99
ygeX1476086CompleteK01751COG1171unknownunknown94.0490.6950.13
ygeX1645071CompleteK01751COG1171ProteobacteriaKlebsiella94.0493.4851.72
ygeX1651580CompleteK01751COG1171ProteobacteriaKlebsiella94.0493.4851.19
ygeX1549786CompleteK01751COG1171unknownunknown95.0493.6649.48
ygeX2805781Lack 5'-endK01751COG1171unknownunknown73.298.0160.0
ygeX2388945Lack 3'-endK01751COG1171unknownunknown81.8999.455.59
ygeX2236600Lack both endsK01751COG1171Firmicutesunknown85.36100.054.07
ygeX1565003CompleteK01751COG1171unknownunknown98.2698.2845.64
ygeX1649417CompleteK01751COG1171unknownunknown92.893.7349.07
ygeX1563470CompleteK01751COG1171unknownunknown98.2698.2845.64
ygeX1563799CompleteK01751COG1171unknownunknown98.2698.2845.89
ygeX1449308CompleteK01751COG1171unknownunknown98.2695.0245.64
ygeX1657749CompleteK01751COG1171unknownunknown94.2994.7248.42
ygeX1561034CompleteK01751COG1171ProteobacteriaDesulfovibrio93.392.6750.4
ygeX1400066CompleteK01751COG1171unknownunknown97.0290.6548.59
ygeX2751401Lack 5'-endK01751COG1171Firmicutesunknown73.797.3860.4
ygeX1611597CompleteK01751COG1171Firmicutesunknown95.0494.7948.7
ygeX2742077Lack 3'-endK01751COG1171unknownunknown76.18100.057.33
ygeX1561011CompleteK01751COG1171Firmicutesunknown94.7993.1548.3
ygeX1870677CompleteK01751COG1171unknownunknown94.5496.2846.6
ygeX1574910CompleteK01751COG1171unknownunknown96.7797.0545.96
ygeX2729814Lack 5'-endK01751COG1171unknownunknown81.3999.0250.15
ygeX2174955Lack 5'-endK01751COG1171Firmicutesunknown85.6198.5646.24
ygeX1581091CompleteK01751COG1171Firmicutesunknown96.0394.8344.07
ygeX1623732CompleteK01751COG1171FirmicutesHoldemania97.2795.0241.09
ygeX1668745CompleteK01751COG1171unknownunknown93.394.2143.01
ygeX3108718Lack 3'-endK01751COG1171unknownunknown70.7298.5954.04
ygeX3059289Lack 3'-endK01751COG1171unknownunknown71.4695.154.86
ygeX1707891CompleteK01751COG1171FirmicutesLactobacillus89.8391.8644.66
ygeX2492190Lack 3'-endK01751COG1171Proteobacteriaunknown75.1994.1449.35
ygeX1711159CompleteK01751COG1171FirmicutesLactobacillus89.8391.8644.11
ygeX1623697CompleteK01751COG1171Proteobacteriaunknown93.893.2842.45
ygeX1776514CompleteK01751COG1171unknownunknown93.0589.946.28
ygeX1681743CompleteK01751COG1171unknownunknown94.5494.4343.46
ygeX1699360CompleteK01751COG1171FirmicutesLactobacillus93.395.4342.26
ygeX1378293CompleteK01751COG1171unknownunknown95.2988.1442.86
ygeX1603907CompleteK01751COG1171unknownunknown93.891.5841.69
ygeX1598564CompleteK01751COG1171unknownunknown93.891.5841.36
ygeX1954170CompleteK01751COG1171unknownunknown91.8193.2143.01
ygeX2107266CompleteK01751COG1171unknownunknown87.3490.9642.49
ygeX1887149CompleteK01751COG1171Proteobacteriaunknown93.894.1338.54
ygeX2477784Lack 3'-endK01751COG1171unknownunknown74.4490.7744.85
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusBlautia0.5684.76e-1602.25e-157
speciesRuminococcus_gnavus0.5155.9e-1271.39e-124
genusCoprobacillus0.4855.29e-1118.32e-109
speciesCoprobacillus_unclassified0.4843.01e-1103.55e-108
genusEggerthella0.4621.5e-991.42e-97
speciesEggerthella_unclassified0.4491.22e-939.6e-92
speciesClostridium_ramosum0.4464.52e-923.05e-90
speciesClostridium_bolteae0.4437.53e-914.44e-89
orderEnterobacteriales0.4291.16e-845.48e-83
familyEnterobacteriaceae0.4291.16e-845.48e-83
genusEscherichia0.4251.05e-824.51e-81
speciesEscherichia_coli0.4192.25e-808.85e-79
familyActinomycetaceae0.4043.04e-741.1e-72
genusActinomyces0.4034.92e-741.66e-72
classBacilli0.3992.1e-726.61e-71
orderLactobacillales0.3984.74e-721.4e-70
classGammaproteobacteria0.3832.11e-665.86e-65
familyStreptococcaceae0.3796.33e-651.66e-63
genusStreptococcus0.3751.83e-634.55e-62
genusOdoribacter-0.3752.45e-635.78e-62
speciesLachnospiraceae_bacterium_1_4_56FAA0.3737.6e-631.71e-61
phylumBacteroidetes-0.3721.92e-623.84e-61
classBacteroidia-0.3721.95e-623.84e-61
orderBacteroidales-0.3721.95e-623.84e-61
speciesOdoribacter_splanchnicus-0.3692.66e-615.02e-60
speciesAlistipes_shahii-0.3683.92e-617.12e-60
speciesEggerthella_lenta0.3596.7e-581.13e-56
speciesRuminococcus_torques0.3596.73e-581.13e-56
familyClostridiaceae0.3581.4e-572.28e-56
familyRikenellaceae-0.3581.6e-572.44e-56
genusAlistipes-0.3581.6e-572.44e-56
genusClostridium0.3573.32e-574.9e-56
familyBacillales_noname0.3438.8e-531.22e-51
genusGemella0.3438.8e-531.22e-51
speciesClostridium_symbiosum0.3421.65e-522.23e-51
speciesClostridium_hathewayi0.3421.84e-522.41e-51
speciesLachnospiraceae_bacterium_9_1_43BFAA0.3391.46e-511.86e-50
speciesClostridium_clostridioforme0.3382.76e-513.43e-50
phylumActinobacteria0.3361.21e-501.43e-49
classActinobacteria0.3361.21e-501.43e-49
orderBacillales0.3277.42e-488.54e-47
orderCoriobacteriales0.3231.2e-461.32e-45
familyCoriobacteriaceae0.3231.2e-461.32e-45
genusPantoea0.3214.84e-465.08e-45
speciesPantoea_unclassified0.3214.84e-465.08e-45
orderActinomycetales0.3182.38e-452.44e-44
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speciesOdoribacter_unclassified-0.0440.05570.0683
genusPhascolarctobacterium-0.0440.05680.0693
speciesPhascolarctobacterium_succinatutens-0.0440.05680.0693
classClostridia0.0420.06720.0815
orderClostridiales0.0420.06720.0815
speciesBacteroides_sp_2_1_22-0.0420.06820.0825
speciesBifidobacterium_adolescentis-0.0410.07830.0945
phylumViruses_noname0.040.08170.0979
classViruses_noname0.040.08170.0979
speciesBacteroides_salanitronis-0.040.08170.0979
speciesSutterella_parvirubra0.040.08670.104
speciesBifidobacterium_catenulatum0.0390.09250.11
speciesEubacterium_cylindroides0.0380.1010.12
speciesLactococcus_phage_P6800.0380.1020.121
speciesHoldemania_filiformis0.0380.1030.122
speciesBacteroides_plebeius-0.0370.1110.131
speciesDorea_longicatena0.0370.1120.132
speciesParabacteroides_unclassified0.0360.1220.143
speciesKlebsiella_phage_KP36-0.0350.1290.151
genusSuccinatimonas-0.0350.1350.157
speciesSuccinatimonas_hippei-0.0350.1350.157
speciesCollinsella_unclassified0.0340.1420.165
genusMyoviridae_noname0.0340.1440.167
speciesParabacteroides_johnsonii-0.0330.1490.172
speciesHaemophilus_sputorum0.0330.150.173
speciesPorphyromonas_asaccharolytica0.0330.1560.18
speciesMegamonas_rupellensis0.0330.1580.181
familySuccinivibrionaceae-0.0320.1730.198
speciesBacteroides_sp_4_3_47FAA-0.0310.1750.2
phylumSynergistetes0.030.1880.213
classSynergistia0.030.1880.213
orderSynergistales0.030.1880.213
familySynergistaceae0.030.1880.213
orderViruses_noname0.030.1980.224
speciesBacteroides_salyersiae-0.0290.2070.233
speciesBacteroides_sp_1_1_6-0.0290.2080.234
speciesTuricibacter_unclassified-0.0280.230.258
familyAcidaminococcaceae0.0270.2360.264
speciesAlistipes_unclassified0.0270.2370.264
speciesCollinsella_tanakaei0.0260.2610.291
speciesPrevotella_stercorea-0.0250.2810.312
genusPyramidobacter0.0250.2890.319
speciesPyramidobacter_piscolens0.0250.2890.319
orderCaudovirales0.0240.2920.322
speciesHoldemania_unclassified-0.0240.2930.322
genusTunalikevirus-0.0240.2960.325
speciesMegamonas_hypermegale0.0240.2980.326
speciesPeptostreptococcaceae_noname_unclassified-0.0240.30.328
speciesDialister_invisus0.0230.3290.359
speciesBacteroides_sp_3_1_190.0220.3340.362
speciesMegamonas_funiformis-0.0220.3340.362
speciesBacteroides_oleiciplenus0.0220.3350.363
speciesDorea_unclassified-0.0210.3640.393
genusTuricibacter-0.0210.3690.398
speciesBacteroides_clarus-0.020.3820.411
speciesBacteroides_eggerthii-0.0190.40.429
speciesLactococcus_phage_bIL670.0170.4580.49
speciesVeillonella_unclassified0.0160.4770.509
speciesBilophila_wadsworthia0.0150.5030.536
speciesOdoribacter_laneus0.0150.5060.538
orderAeromonadales0.0150.5140.545
genusActinobacillus0.0150.5280.558
speciesActinobacillus_unclassified0.0150.5280.558
speciesBacteroides_fluxus-0.0150.5310.559
speciesLactococcus_phage_jm20.0140.5320.559
speciesSlackia_piriformis0.0140.5570.584
classDeltaproteobacteria-0.0130.5690.593
orderDesulfovibrionales-0.0130.5690.593
familyDesulfovibrionaceae-0.0130.5690.593
speciesCoprococcus_comes0.0130.5840.607
familyPodoviridae0.0110.6420.666
genusDialister-0.010.6720.696
genusBilophila0.010.6740.696
speciesBacteroides_coprocola-0.010.6770.698
genusAcidaminococcaceae_unclassified0.0090.7030.723
speciesRoseburia_unclassified0.0090.7120.731
speciesOlsenella_unclassified0.0080.7210.738
speciesOscillibacter_sp_KLE_1745-0.0080.7280.744
speciesLactococcus_phage_phi7-0.0080.7330.747
speciesParabacteroides_sp_20_3-0.0080.7370.75
speciesBilophila_unclassified0.0070.7510.762
familySiphoviridae-0.0060.790.8
speciesRuminococcus_bromii0.0040.8740.883
speciesClostridium_leptum-0.0030.8930.901
speciesEubacterium_ramulus-0.0030.9130.919
familyViruses_noname-0.0020.9310.933
genusViruses_noname-0.0020.9310.933
speciesTuricibacter_sanguinis0.0010.950.95
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.1260936157560.05934186925063.05358283553e-128452.83852
Type II diabetesDenmark752770.06814307045590.04391847919932.27072142053e-0710663.49428
Type II diabetesChina1831850.1342612074830.08608342038067.29187140703e-062860.945173
Crohns diseaseSpain17660.1624025757750.07039759067242.38119785386e-0511323.76392
Type II diabetesSweden53920.1129910213610.09213678472070.01589505622446012.03522
ObesityDenmark1691230.0478787441480.04669455731880.016245545638629409.66755
Ulcerative colitisSpain78660.0735887380320.07039759067240.122771705574790526.0771
Colorectal cancerAustria64350.1953889167670.147995329440.196409885197863729.2225
Rheumatoid arthritisChina127980.08570732306280.0822757808530.408109139951499349.9983
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382