MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-12 14:21:11 PST
Job id & description: 2176, reductase ygfK
Query type: protein
Count queries & homologs: 1, 112
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
ygfk127381CompleteK12527COG0493FirmicutesAnaerococcus100.099.2153.95
ygfk133486CompleteK12527COG0493unknownunknown100.099.852.98
ygfk136528Lack 5'-endK12527COG0493unknownunknown99.399.852.75
ygfk134555CompleteK12527COG0493unknownunknown100.0100.050.45
ygfk129099CompleteK12527COG0493unknownunknown100.098.6151.64
ygfk129041CompleteK12527COG0493unknownunknown100.099.851.03
ygfk128566CompleteK12527COG0493FirmicutesClostridium100.098.6152.08
ygfk128572CompleteK12527COG0493FirmicutesClostridium100.098.6151.98
ygfk129023CompleteK12527COG0493unknownunknown100.098.6151.34
ygfk131431CompleteK12527COG0493FirmicutesClostridium100.099.550.2
ygfk128661CompleteK12527COG0493FirmicutesClostridium100.098.6151.88
ygfk130196CompleteK12527COG0493FirmicutesRuminococcus100.099.351.04
ygfk128656CompleteK12527COG0493FirmicutesClostridium100.098.6151.59
ygfk133859CompleteK12527COG0493Firmicutesunknown100.0100.050.25
ygfk133509CompleteK12527COG0493Firmicutesunknown100.099.951.34
ygfk134275CompleteK12527COG0493Firmicutesunknown100.0100.051.79
ygfk130216CompleteK12527COG0493FirmicutesRuminococcus100.099.350.74
ygfk133724CompleteK12527COG0493Firmicutesunknown100.0100.050.74
ygfk132895CompleteK12527COG0493unknownunknown96.4296.1951.6
ygfk131648Lack 5'-endK12527COG0493unknownunknown100.099.751.38
ygfk125635Lack 5'-endK12527COG0493FirmicutesRuminococcus100.098.2350.74
ygfk133073CompleteK12527COG0493unknownunknown100.099.950.05
ygfk132117CompleteK12527COG0493unknownunknown100.099.851.04
ygfk134219CompleteK12527COG0493Firmicutesunknown100.0100.051.09
ygfk132021CompleteK12527COG0493FirmicutesBlautia100.099.750.05
ygfk133744CompleteK12527COG0493unknownunknown100.099.950.74
ygfk134271CompleteK12527COG0493FirmicutesClostridium100.099.849.16
ygfk132304CompleteK12527COG0493FirmicutesAnaerotruncus100.0100.048.58
ygfk132122CompleteK12527COG0493unknownunknown100.099.850.25
ygfk134113CompleteK12527COG0493unknownunknown99.399.549.8
ygfk142544Lack both endsK12527COG0493Spirochaetesunknown98.0199.4950.56
ygfk134614CompleteK12527COG0493FirmicutesCoprococcus100.099.950.15
ygfk134734CompleteK12527COG0493unknownunknown99.399.851.34
ygfk133004CompleteK12527COG0493unknownunknown100.099.949.6
ygfk122819Lack 5'-endK12527COG0493FirmicutesBlautia100.097.4650.25
ygfk138368CompleteK12527COG0493unknownunknown100.099.948.36
ygfk132158CompleteK12527COG0493FirmicutesAnaerostipes100.099.949.56
ygfk132718CompleteK12527COG0493FirmicutesPseudoflavonifractor100.099.947.89
ygfk133112CompleteK12527COG0493ActinobacteriaAtopobium100.099.848.03
ygfk131162CompleteK12527COG0493FirmicutesEnterococcus100.099.848.02
ygfk138306CompleteK12527COG0493unknownunknown100.099.947.32
ygfk135127CompleteK12527COG0493unknownunknown99.399.848.7
ygfk138554CompleteK12527COG0493unknownunknown100.0100.049.36
ygfk131960CompleteK12527COG0493ActinobacteriaCollinsella100.099.847.35
ygfk138227CompleteK12527COG0493unknownunknown100.099.946.88
ygfk138426CompleteK12527COG0493unknownunknown99.999.847.47
ygfk133202CompleteK12527COG0493FirmicutesEubacterium100.099.948.81
ygfk135292CompleteK12527COG0493unknownunknown99.399.947.48
ygfk133740CompleteK12527COG0493unknownunknown95.2295.1848.49
ygfk133464CompleteK12527COG0493FirmicutesClostridium100.099.847.02
ygfk138461CompleteK12527COG0493unknownunknown99.999.847.42
ygfk138262CompleteK12527COG0493unknownunknown99.999.847.62
ygfk139802CompleteK12527COG0493unknownunknown99.599.847.81
ygfk139810CompleteK12527COG0493unknownunknown99.599.847.31
ygfk140307CompleteK12527COG0493unknownunknown99.6100.048.31
ygfk139743CompleteK12527COG0493unknownunknown99.599.847.61
ygfk133203CompleteK12527COG0493unknownunknown100.099.945.99
ygfk134480CompleteK12527COG0493unknownunknown100.098.9946.59
ygfk148358Lack 3'-endK12527COG0493unknownunknown95.8298.3348.81
ygfk137919CompleteK12527COG0493unknownunknown100.099.947.08
ygfk137931CompleteK12527COG0493unknownunknown100.099.947.33
ygfk133121CompleteK12527COG0493FirmicutesOribacterium100.099.947.77
ygfk133414CompleteK12527COG0493unknownunknown96.4296.2949.38
ygfk138544CompleteK12527COG0493unknownunknown100.099.947.88
ygfk124576CompleteK12527COG0493unknownunknown99.996.3747.47
ygfk137946CompleteK12527COG0493unknownunknown99.999.747.37
ygfk138319CompleteK12527COG0493unknownunknown100.099.947.08
ygfk138304CompleteK12527COG0493unknownunknown100.099.947.98
ygfk138574CompleteK12527COG0493unknownunknown99.999.847.48
ygfk138354CompleteK12527COG0493unknownunknown100.099.946.88
ygfk133330CompleteK12527COG0493unknownunknown99.999.848.21
ygfk138711CompleteK12527COG0493unknownunknown99.999.6947.13
ygfk138291CompleteK12527COG0493unknownunknown100.099.947.78
ygfk139849CompleteK12527COG0493unknownunknown99.6100.045.97
ygfk139107CompleteK12527COG0493unknownunknown99.599.3947.66
ygfk138589CompleteK12527COG0493unknownunknown99.999.847.47
ygfk134223CompleteK12527COG0493unknownunknown99.998.3945.83
ygfk138261CompleteK12527COG0493unknownunknown99.999.6946.48
ygfk132615CompleteK12527COG0493unknownunknown95.5295.4948.4
ygfk138417CompleteK12527COG0493unknownunknown100.099.946.58
ygfk138219CompleteK12527COG0493unknownunknown99.999.847.82
ygfk138743CompleteK12527COG0493unknownunknown99.999.847.17
ygfk138201CompleteK12527COG0493unknownunknown99.999.6947.07
ygfk135589CompleteK12527COG0493unknownunknown99.399.947.41
ygfk135630CompleteK12527COG0493unknownunknown99.399.947.41
ygfk139754CompleteK12527COG0493unknownunknown99.699.946.42
ygfk139639CompleteK12527COG0493unknownunknown100.099.947.18
ygfk139756CompleteK12527COG0493unknownunknown99.6100.046.33
ygfk136085CompleteK12527COG0493unknownunknown100.0100.046.58
ygfk138308CompleteK12527COG0493unknownunknown99.999.846.78
ygfk138485CompleteK12527COG0493unknownunknown100.099.945.8
ygfk136939CompleteK12527COG0493unknownunknown100.0100.045.49
ygfk137619CompleteK12527COG0493unknownunknown100.099.946.84
ygfk136467CompleteK12527COG0493unknownunknown100.0100.045.26
ygfk138710CompleteK12527COG0493unknownunknown100.099.945.2
ygfk117185CompleteK12527COG0493Proteobacteriaunknown100.099.5242.73
ygfk173701Lack 3'-endK12527COG0493unknownunknown92.44100.047.96
ygfk117643CompleteK12527COG0493ProteobacteriaEnterobacter95.3294.7844.37
ygfk117642CompleteK12527COG0493ProteobacteriaKlebsiella100.099.5243.93
ygfk118121CompleteK12527COG0493ProteobacteriaEscherichia100.099.4243.73
ygfk179571Lack 5'-endK12527COG0493unknownunknown91.8499.6747.31
ygfk118383CompleteK12527COG0493unknownunknown99.699.5242.8
ygfk193941Lack 5'-endK12527COG0493unknownunknown89.0599.6647.67
ygfk199390Lack 3'-endK12527COG0493unknownunknown88.2699.8946.58
ygfk86835CompleteK12527COG0493unknownunknown82.4975.9745.98
ygfk289241Lack 3'-endK12527COG0493unknownunknown76.92100.047.88
ygfk297640Lack 3'-endK12527COG0493unknownunknown77.21100.048.97
ygfk319292Lack 3'-endK12527COG0493unknownunknown75.1299.4748.68
ygfk370451Lack both endsK12527COG0493Firmicutesunknown71.64100.046.96
ygfk388419Lack 5'-endK12527COG0493unknownunknown70.0599.7149.08
ygfk89779CompleteK12527COG0493ProteobacteriaBilophila94.6392.0136.54
ygfk375748Lack 5'-endK12527COG0493unknownunknown71.7499.7245.03
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumBacteroidetes-0.5241.49e-1322.36e-130
classBacteroidia-0.5241.5e-1322.36e-130
orderBacteroidales-0.5241.5e-1322.36e-130
genusBlautia0.5011.83e-1192.16e-117
orderCoriobacteriales0.4913.69e-1142.9e-112
familyCoriobacteriaceae0.4913.69e-1142.9e-112
phylumActinobacteria0.4298.91e-855.26e-83
classActinobacteria0.4298.91e-855.26e-83
speciesRuminococcus_torques0.4135.03e-782.64e-76
speciesEubacterium_hallii0.3581.31e-576.18e-56
familyBacteroidaceae-0.3551.11e-564.37e-55
genusBacteroides-0.3551.11e-564.37e-55
classErysipelotrichia0.3533.74e-561.18e-54
orderErysipelotrichales0.3533.74e-561.18e-54
familyErysipelotrichaceae0.3533.74e-561.18e-54
genusHaemophilus-0.3521.08e-553.05e-54
speciesHaemophilus_parainfluenzae-0.3521.1e-553.05e-54
familyActinomycetaceae0.3512.29e-555.52e-54
orderPasteurellales-0.3512.34e-555.52e-54
familyPasteurellaceae-0.3512.34e-555.52e-54
genusActinomyces0.3469.22e-542.07e-52
speciesRuminococcus_obeum0.3431.07e-522.3e-51
genusDorea0.3415.05e-521.04e-50
classClostridia0.3239.53e-471.8e-45
orderClostridiales0.3239.53e-471.8e-45
genusEscherichia0.3161.45e-442.63e-43
speciesEscherichia_coli0.3121.62e-432.83e-42
speciesRuminococcus_sp_5_1_39BFAA0.3122.16e-433.64e-42
phylumFirmicutes0.3113.46e-435.45e-42
orderBifidobacteriales0.3113.58e-435.45e-42
familyBifidobacteriaceae0.3113.58e-435.45e-42
genusBifidobacterium0.3073.82e-425.63e-41
genusAnaerostipes0.3075.45e-427.8e-41
genusLachnospiraceae_noname0.3067.09e-429.84e-41
genusErysipelotrichaceae_noname0.3061.01e-411.36e-40
genusCollinsella0.3051.62e-412.12e-40
genusRuminococcus0.2994.93e-406.29e-39
speciesCollinsella_aerofaciens0.2965.09e-396.32e-38
orderActinomycetales0.2925.68e-386.87e-37
familyRuminococcaceae0.291.26e-371.49e-36
genusEggerthella0.291.41e-371.62e-36
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2853.28e-363.69e-35
genusSubdoligranulum0.2845.07e-365.57e-35
speciesRoseburia_inulinivorans-0.286.52e-356.99e-34
orderEnterobacteriales0.2772.29e-342.35e-33
familyEnterobacteriaceae0.2772.29e-342.35e-33
speciesDorea_longicatena0.2741.42e-331.43e-32
speciesSubdoligranulum_unclassified0.2732.37e-332.33e-32
speciesEggerthella_lenta0.2732.83e-332.73e-32
classBetaproteobacteria-0.2724.04e-333.81e-32
speciesEggerthella_unclassified0.2725.06e-334.68e-32
familySutterellaceae-0.271.71e-321.55e-31
familyLachnospiraceae0.2691.9e-321.69e-31
genusGordonibacter0.2684.75e-324.08e-31
speciesGordonibacter_pamelaeae0.2684.75e-324.08e-31
speciesErysipelotrichaceae_bacterium_21_30.2676.7e-325.65e-31
orderBurkholderiales-0.2661.12e-319.27e-31
genusCoprobacillus0.2636.72e-315.47e-30
speciesErysipelotrichaceae_bacterium_2_2_44A0.2581.01e-298.08e-29
familyClostridiaceae0.2562.31e-291.82e-28
genusClostridium0.2554.28e-293.31e-28
speciesClostridium_ramosum0.2545.94e-294.52e-28
speciesDorea_formicigenerans0.2546.27e-294.7e-28
speciesClostridium_leptum0.2472.04e-271.5e-26
speciesStreptococcus_thermophilus0.2472.69e-271.95e-26
speciesErysipelotrichaceae_bacterium_6_1_450.2447.6e-275.44e-26
speciesBacteroides_vulgatus-0.2431.65e-261.16e-25
genusAdlercreutzia0.2431.8e-261.23e-25
speciesAdlercreutzia_equolifaciens0.2431.8e-261.23e-25
speciesEscherichia_unclassified0.245.24e-263.53e-25
speciesBifidobacterium_longum0.245.77e-263.84e-25
speciesAnaerostipes_hadrus0.2381.47e-259.64e-25
genusRoseburia-0.2372.48e-251.6e-24
speciesCoprococcus_catus0.2331.97e-241.26e-23
genusPantoea0.2332.05e-241.27e-23
speciesPantoea_unclassified0.2332.05e-241.27e-23
speciesCoprococcus_comes0.2313.85e-242.36e-23
phylumVerrucomicrobia0.2299.32e-245.3e-23
classVerrucomicrobiae0.2299.32e-245.3e-23
orderVerrucomicrobiales0.2299.32e-245.3e-23
familyVerrucomicrobiaceae0.2299.32e-245.3e-23
genusAkkermansia0.2299.32e-245.3e-23
speciesAkkermansia_muciniphila0.2299.32e-245.3e-23
familyEnterococcaceae0.2291.01e-235.68e-23
genusEnterococcus0.2291.22e-236.77e-23
speciesBacteroides_ovatus-0.2281.57e-238.62e-23
speciesSubdoligranulum_sp_4_3_54A2FAA0.2264.93e-232.67e-22
speciesCoprobacillus_unclassified0.2257.19e-233.86e-22
genusSolobacterium0.225.4e-222.83e-21
speciesSolobacterium_moorei0.225.4e-222.83e-21
genusParabacteroides-0.2197.79e-224.04e-21
orderLactobacillales0.2172.52e-211.29e-20
speciesBacteroides_xylanisolvens-0.2163.23e-211.63e-20
classBacilli0.2163.25e-211.63e-20
genusMethanobrevibacter0.214.1e-202.04e-19
speciesBacteroides_thetaiotaomicron-0.2096.38e-203.14e-19
classMethanobacteria0.2089.21e-204.39e-19
orderMethanobacteriales0.2089.21e-204.39e-19
familyMethanobacteriaceae0.2089.21e-204.39e-19
phylumEuryarchaeota0.2062.52e-191.19e-18
speciesEubacterium_eligens-0.2053.7e-191.73e-18
familyBacillales_noname0.2053.95e-191.81e-18
genusGemella0.2053.95e-191.81e-18
genusCoprococcus0.2044.24e-191.92e-18
speciesMethanobrevibacter_smithii0.2021.22e-185.48e-18
speciesBlautia_producta0.2021.24e-185.52e-18
genusOlsenella0.1993.53e-181.56e-17
speciesVeillonella_unclassified-0.1993.84e-181.68e-17
familyStreptococcaceae0.1994.3e-181.86e-17
speciesLachnospiraceae_bacterium_5_1_63FAA0.1985.5e-182.36e-17
speciesClostridium_hathewayi0.1961.24e-175.27e-17
speciesBacteroides_stercoris-0.1951.49e-176.28e-17
speciesPropionibacterium_freudenreichii0.1942.97e-171.24e-16
genusStreptococcus0.191.06e-164.39e-16
speciesVeillonella_dispar-0.191.32e-165.42e-16
genusPropionibacterium0.1864.63e-161.88e-15
orderBacillales0.1856.67e-162.69e-15
familyClostridiales_Family_XI_Incertae_Sedis0.1841.11e-154.44e-15
speciesBifidobacterium_adolescentis0.1822.29e-159.08e-15
classGammaproteobacteria0.1822.34e-159.2e-15
speciesLachnospiraceae_bacterium_1_4_56FAA0.1813.15e-151.23e-14
genusVeillonella-0.1813.48e-151.35e-14
speciesVeillonella_atypica-0.184.64e-151.78e-14
speciesStreptococcus_sanguinis0.1771.38e-145.25e-14
genusActinobacillus-0.1761.72e-146.44e-14
speciesActinobacillus_unclassified-0.1761.72e-146.44e-14
genusAnaerotruncus0.1761.94e-147.21e-14
speciesEnterococcus_faecium0.1761.99e-147.34e-14
speciesClostridium_bolteae0.1743.09e-141.13e-13
speciesRoseburia_intestinalis-0.1743.48e-141.26e-13
familyPrevotellaceae-0.1734.3e-141.55e-13
speciesOlsenella_unclassified0.1735.69e-142.03e-13
speciesLactobacillus_rhamnosus0.1726.2e-142.2e-13
speciesEubacterium_ramulus0.171.41e-134.97e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1682.25e-137.87e-13
speciesClostridium_clostridioforme0.1656.98e-132.42e-12
speciesLachnospiraceae_bacterium_5_1_57FAA0.1648.89e-133.06e-12
speciesMethanobrevibacter_unclassified0.1621.96e-126.7e-12
speciesBifidobacterium_animalis0.1612.14e-127.27e-12
speciesBlautia_hydrogenotrophica0.163.28e-121.11e-11
speciesBacteroides_plebeius-0.163.43e-121.15e-11
familyPorphyromonadaceae-0.163.91e-121.3e-11
genusHoldemania0.164e-121.32e-11
speciesVeillonella_parvula-0.1594.39e-121.44e-11
genusFaecalibacterium-0.1561.18e-113.81e-11
speciesFaecalibacterium_prausnitzii-0.1561.18e-113.81e-11
genusLeuconostoc0.1551.65e-115.3e-11
speciesCampylobacter_concisus-0.1524.05e-111.29e-10
speciesParabacteroides_distasonis-0.1524.51e-111.43e-10
speciesEnterococcus_faecalis0.156.59e-112.07e-10
genusPeptostreptococcus0.157.48e-112.34e-10
speciesBacteroides_uniformis-0.1499.21e-112.86e-10
speciesAnaerotruncus_colihominis0.1471.74e-105.37e-10
genusParvimonas0.1462.21e-106.77e-10
speciesParvimonas_unclassified0.1462.28e-106.94e-10
genusParasutterella-0.1453.12e-109.38e-10
speciesParasutterella_excrementihominis-0.1453.12e-109.38e-10
genusPrevotella-0.1435.8e-101.73e-09
speciesPrevotella_stercorea-0.1426.33e-101.88e-09
speciesLactobacillus_delbrueckii0.1427.01e-102.06e-09
speciesOdoribacter_splanchnicus-0.1427.01e-102.06e-09
genusLactococcus0.1427.11e-102.07e-09
phylumProteobacteria0.1427.2e-102.08e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1418.72e-102.51e-09
speciesEubacterium_siraeum0.141.28e-093.66e-09
speciesMegamonas_unclassified-0.141.29e-093.67e-09
speciesRuminococcus_bromii0.1391.43e-094.04e-09
genusMegamonas-0.1391.52e-094.27e-09
genusOdoribacter-0.1381.91e-095.33e-09
speciesGemella_morbillorum0.1382.17e-096.02e-09
speciesFusobacterium_mortiferum-0.1354.52e-091.25e-08
speciesLactobacillus_casei_paracasei0.1355.01e-091.37e-08
genusRothia0.1345.3e-091.45e-08
familyMicrococcaceae0.1345.75e-091.56e-08
speciesMegamonas_funiformis-0.1346.34e-091.71e-08
speciesMegamonas_rupellensis-0.1346.73e-091.8e-08
speciesEggerthella_sp_1_3_56FAA0.1336.86e-091.83e-08
speciesLactococcus_lactis0.1337.56e-092e-08
genusSiphoviridae_noname0.1338.46e-092.23e-08
speciesEubacterium_limosum0.1311.33e-083.49e-08
genusAggregatibacter-0.131.87e-084.88e-08
speciesParabacteroides_merdae-0.1291.91e-084.95e-08
familyLactobacillaceae0.1282.56e-086.6e-08
speciesStreptococcus_mutans0.1282.9e-087.44e-08
familyLeuconostocaceae0.1283.1e-087.91e-08
genusPseudoflavonifractor0.1264.36e-081.1e-07
speciesPseudoflavonifractor_capillosus0.1264.36e-081.1e-07
speciesRuminococcus_gnavus0.1264.86e-081.22e-07
speciesHoldemania_filiformis0.1247.5e-081.87e-07
genusLactobacillus0.1238.6e-082.14e-07
speciesPeptostreptococcus_anaerobius0.1238.82e-082.18e-07
speciesPrevotella_copri-0.121.92e-074.72e-07
speciesAggregatibacter_segnis-0.121.93e-074.72e-07
speciesLactobacillus_plantarum0.1192.4e-075.84e-07
speciesAnaerostipes_unclassified0.1192.52e-076.1e-07
speciesLachnospiraceae_bacterium_7_1_58FAA0.1183.31e-077.97e-07
speciesStreptococcus_salivarius0.1173.71e-078.89e-07
familyPropionibacteriaceae0.1173.74e-078.92e-07
familyBurkholderiales_noname-0.1173.85e-079.13e-07
speciesMegamonas_hypermegale-0.1173.98e-079.39e-07
familyVeillonellaceae-0.1174.24e-079.91e-07
speciesLachnospiraceae_bacterium_3_1_46FAA0.1174.24e-079.91e-07
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speciesRuminococcus_sp_JC3040.1092.41e-065.27e-06
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speciesCoprobacillus_sp_D60.1011.13e-052.26e-05
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speciesPorphyromonas_uenonis0.0935.91e-050.000113
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0926.24e-050.000119
speciesHaemophilus_sputorum-0.0926.69e-050.000127
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speciesBacteroides_nordii-0.0917.95e-050.000149
speciesAlistipes_sp_AP110.0918.18e-050.000153
speciesBacteroides_finegoldii-0.0918.36e-050.000155
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speciesLachnospiraceae_bacterium_2_1_58FAA0.0890.0001160.000214
genusPeptostreptococcaceae_noname0.0880.0001390.000255
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familyRikenellaceae-0.080.0005530.000974
genusAlistipes-0.080.0005530.000974
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speciesMegasphaera_micronuciformis-0.0780.0007130.00125
speciesEubacterium_biforme0.0780.0007370.00128
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0780.0007410.00129
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genusMegasphaera-0.0770.0008720.0015
genusSutterella-0.0750.001090.00187
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speciesBifidobacterium_bifidum0.0750.001240.00211
genusOxalobacter0.0740.001470.00249
speciesOxalobacter_formigenes0.0740.001470.00249
speciesEubacterium_dolichum0.0720.001880.00317
speciesSutterella_wadsworthensis-0.0720.001950.00328
speciesLactococcus_garvieae0.0710.002070.00346
genusCoriobacteriaceae_noname0.070.002340.0039
speciesCoriobacteriaceae_bacterium_phI0.070.002510.00417
speciesBilophila_wadsworthia0.070.002590.00429
speciesLachnospiraceae_bacterium_1_1_57FAA0.0690.002640.00436
speciesBacteroides_cellulosilyticus-0.0690.002740.00451
speciesEubacterium_sp_3_1_310.0690.00280.00459
genusBilophila0.0680.003310.00541
speciesLactobacillus_gasseri0.0670.003630.00591
speciesRuminococcus_callidus-0.0670.003910.00634
speciesLactobacillus_amylovorus0.0670.003970.00642
speciesKlebsiella_sp_MS_92_30.0660.004060.00654
speciesClostridium_sp_KLE_17550.0660.004390.00705
speciesBacteroides_oleiciplenus-0.0650.00460.00736
speciesBilophila_unclassified0.0650.004690.00748
speciesClostridium_citroniae0.0630.006710.0107
speciesBacteroides_salyersiae-0.0620.007730.0122
genusMethanosphaera0.0610.007890.0124
speciesMethanosphaera_stadtmanae0.0610.007890.0124
speciesAlistipes_indistinctus0.0610.008160.0128
speciesBacteroides_sp_2_1_22-0.0570.0140.0219
speciesStreptococcus_phage_Sfi210.0560.01470.0229
speciesClostridium_spiroforme0.0560.01610.025
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speciesRuminococcaceae_bacterium_D160.0550.01660.0256
speciesDesulfovibrio_piger0.0540.01950.03
speciesLactococcus_phage_jm20.0530.02310.0354
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speciesLactobacillus_mucosae-0.0520.0250.0378
speciesErysipelotrichaceae_bacterium_3_1_530.0510.02710.0409
speciesBacteroides_intestinalis-0.0510.02810.0422
speciesAlistipes_unclassified0.0510.02830.0424
speciesHoldemania_unclassified0.0510.02880.043
genusLambdalikevirus0.0490.03420.0509
speciesLactobacillus_salivarius-0.0480.03770.056
speciesDorea_unclassified-0.0480.03850.057
speciesStreptococcus_lutetiensis0.0480.03990.0589
genusEnterobacter-0.0470.04350.064
genusParaprevotella-0.0460.04450.0652
genusCampylobacter-0.0460.04510.0659
speciesEnterobacter_aerogenes-0.0460.04660.0679
speciesLactobacillus_reuteri0.0450.0510.0741
speciesLactobacillus_fermentum0.0440.05440.0788
familyBacteroidales_noname0.0440.05520.0791
genusBacteroidales_noname0.0440.05520.0791
speciesBacteroidales_bacterium_ph80.0440.05520.0791
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genusProteus0.0440.0570.0813
speciesParaprevotella_clara-0.0440.05850.0832
speciesAlistipes_finegoldii-0.0440.05880.0833
familyCampylobacteraceae-0.0430.06240.0882
speciesWeissella_cibaria0.0430.06420.0905
familyEubacteriaceae0.0430.06570.0923
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genusEubacterium0.0420.06870.0959
speciesMegasphaera_unclassified-0.0410.07680.107
genusButyricimonas-0.0410.0780.108
speciesButyricimonas_synergistica-0.0410.0780.108
orderViruses_noname0.040.08010.111
speciesParabacteroides_unclassified-0.040.08040.111
speciesBacteroides_sp_4_3_47FAA-0.040.08250.113
genusCatenibacterium0.0390.08980.123
speciesCatenibacterium_mitsuokai0.0390.08980.123
speciesDesulfovibrio_desulfuricans0.0390.09170.125
speciesEnterobacter_cloacae-0.0390.09210.125
genusButyricicoccus0.0390.09280.125
speciesButyricicoccus_pullicaecorum0.0390.09280.125
genusMitsuokella0.0380.1040.139
genusFusobacterium-0.0380.1040.139
speciesOscillibacter_unclassified0.0380.1040.139
speciesCollinsella_tanakaei-0.0380.1050.14
genusFlavonifractor0.0370.1060.14
speciesPrevotella_bivia0.0370.1060.14
speciesFlavonifractor_plautii0.0370.1060.14
familyStaphylococcaceae0.0370.1090.144
phylumFusobacteria-0.0370.110.144
classFusobacteriia-0.0370.110.144
orderFusobacteriales-0.0370.110.144
speciesKlebsiella_phage_KP36-0.0370.1110.145
genusAcidaminococcus0.0360.1170.152
speciesEubacterium_rectale-0.0350.1250.162
familyFusobacteriaceae-0.0350.1260.163
speciesLactobacillus_acidophilus0.0350.1270.164
speciesMitsuokella_unclassified0.0350.1280.165
familyOscillospiraceae0.0340.1380.176
genusOscillibacter0.0340.1380.176
speciesBacteroides_clarus-0.0340.1380.176
speciesRoseburia_hominis-0.0340.1390.177
speciesBacteroides_coprophilus-0.0340.1410.179
speciesRuminococcus_champanellensis0.0340.1430.181
speciesAcidaminococcus_unclassified0.0330.1540.194
familyAcidaminococcaceae0.0330.1560.196
speciesLactobacillus_ruminis-0.0330.1580.198
speciesKlebsiella_pneumoniae-0.0330.1580.198
genusClostridiaceae_noname0.0320.1640.204
speciesProteus_mirabilis0.0320.1640.204
speciesClostridiaceae_bacterium_JC1180.0320.1640.204
speciesAlistipes_senegalensis0.0310.1810.224
speciesAcidaminococcus_fermentans0.030.1880.232
genusStaphylococcus0.030.1940.239
genusPhascolarctobacterium0.030.1970.242
speciesPhascolarctobacterium_succinatutens0.030.1970.242
genusBarnesiella0.030.2020.246
speciesBarnesiella_intestinihominis0.030.2020.246
speciesParabacteroides_goldsteinii-0.0290.2040.248
speciesClostridium_perfringens-0.0290.210.255
speciesCoprococcus_eutactus0.0280.2260.274
speciesEnterobacteria_phage_HK5440.0270.2520.304
speciesLactobacillus_oris0.0260.2560.308
genusTunalikevirus-0.0260.2630.316
speciesBacteroides_salanitronis-0.0260.2640.316
speciesBifidobacterium_breve0.0260.2670.318
genusSuccinatimonas-0.0260.2680.318
genusWeissella0.0260.2680.318
speciesSuccinatimonas_hippei-0.0260.2680.318
speciesKlebsiella_unclassified0.0250.2810.332
speciesHoldemania_sp_AP20.0250.2890.341
speciesLactococcus_phage_phi70.0240.3040.358
genusButyrivibrio0.0240.3080.362
speciesLactobacillus_sanfranciscensis0.0240.3090.362
genusC2likevirus0.0230.310.362
speciesRuminococcus_lactaris0.0230.3180.371
speciesBacteroides_fluxus-0.0230.320.372
speciesSutterella_parvirubra-0.0230.3240.374
speciesCollinsella_unclassified-0.0230.3240.374
speciesOdoribacter_unclassified-0.0230.3240.374
speciesMegasphaera_elsdenii-0.0220.3360.387
speciesClostridium_nexile0.0220.3430.394
familySuccinivibrionaceae-0.0220.3490.4
speciesC2likevirus_unclassified0.0210.3540.405
speciesButyrivibrio_crossotus0.0210.3630.414
speciesClostridium_sp_ATCC_BAA_4420.0210.3660.416
genusSlackia0.0210.3750.425
speciesFusobacterium_nucleatum0.020.3770.427
speciesLactococcus_phage_936_sensu_lato-0.020.3840.434
orderAeromonadales-0.020.3950.445
speciesClostridium_sp_L2_500.020.3990.448
speciesLactobacillus_crispatus0.0180.4340.487
speciesLactobacillus_vaginalis0.0170.4570.511
speciesFusobacterium_ulcerans0.0160.4870.542
speciesMitsuokella_multacida-0.0160.4870.542
speciesStreptococcus_pasteurianus-0.0160.4930.548
genusCoprobacter-0.0150.5050.558
speciesCoprobacter_fastidiosus-0.0150.5050.558
speciesTuricibacter_sanguinis0.0150.5120.565
phylumSynergistetes0.0150.5240.573
classSynergistia0.0150.5240.573
orderSynergistales0.0150.5240.573
familySynergistaceae0.0150.5240.573
speciesCitrobacter_freundii0.0140.5390.588
speciesCollinsella_intestinalis-0.0140.550.598
speciesParabacteroides_sp_20_30.0130.5790.628
speciesBacteroides_eggerthii-0.0120.590.638
speciesPeptostreptococcaceae_noname_unclassified0.0120.5910.638
genusCitrobacter0.0120.60.647
speciesLeuconostoc_lactis0.0110.6330.681
speciesBacteroides_barnesiae-0.0110.6390.685
speciesBifidobacterium_angulatum-0.0110.640.685
speciesBacteroides_sp_3_1_19-0.010.670.715
speciesAlistipes_onderdonkii0.010.680.725
genusAcidaminococcaceae_unclassified-0.0090.6890.732
genusKlebsiella-0.0090.70.742
familyMyoviridae0.0080.7230.765
genusPyramidobacter0.0080.7340.773
speciesPyramidobacter_piscolens0.0080.7340.773
speciesCitrobacter_unclassified0.0070.750.788
speciesSlackia_piriformis0.0070.7590.794
familyViruses_noname0.0070.7610.794
genusViruses_noname0.0070.7610.794
speciesParabacteroides_sp_D130.0070.7620.794
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0060.7830.814
speciesOscillibacter_sp_KLE_1745-0.0050.8130.843
speciesBacteroides_pectinophilus0.0050.820.849
genusMyoviridae_noname-0.0050.8220.849
speciesBacteroides_sp_1_1_6-0.0050.8280.853
speciesTuricibacter_unclassified-0.0050.8360.86
speciesFusobacterium_varium-0.0050.8420.864
speciesWeissella_confusa0.0040.8530.873
speciesDialister_succinatiphilus0.0040.8630.882
speciesStreptococcus_infantarius0.0040.8710.888
speciesButyrivibrio_unclassified-0.0040.8780.893
familyPodoviridae0.0030.9010.915
speciesAlistipes_sp_HGB50.0030.9110.923
speciesLactococcus_phage_bIL67-0.0020.9190.929
genusTuricibacter0.0020.9270.935
speciesAcidaminococcus_intestini0.0020.9320.938
speciesCoprococcus_sp_ART55_1-0.0020.9380.942
speciesEubacterium_ventriosum-0.0010.9790.981
speciesBifidobacterium_pseudocatenulatum0.00.9930.993
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.08148896559420.05689125118356.24528629329e-0711263.69096
Type II diabetesChina1831850.08889423825140.0632826806980.00072746509476514734.86797
Rheumatoid arthritisChina127980.0821347243770.07003231236240.031460420878822977.65999
Crohns diseaseSpain17660.0992654570240.06959838797820.03946650682871085536.0931
Type II diabetesSweden53920.1135102439080.1029794354390.222164805628780626.4341
Liver cirrhosisChina1201140.05556464543540.05023590557410.3926491578672297477.1742
Ulcerative colitisSpain78660.06138451817280.06959838797820.4993223355791909662.994
Colorectal cancerAustria64350.1800529938020.1444612984580.6212712835512089870.7065
ObesityDenmark1691230.05806651267020.06173901296430.7398616079592486981.7763
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382