MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-12 14:37:39 PST
Job id & description: 2178, carbamoyl transferase
Query type: protein
Count queries & homologs: 1, 175
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
ygeW1648521CompleteK09065COG0078FirmicutesAnaerostipes99.599.2578.54
ygeW1521225CompleteK09065COG0078FirmicutesEnterococcus98.9995.479.19
ygeW1510608CompleteK09065COG0078FirmicutesOribacterium99.2595.1877.97
ygeW1661987CompleteK09065COG0078FirmicutesBlautia99.599.7577.27
ygeW1667932CompleteK09065COG0078Firmicutesunknown98.9999.2476.9
ygeW1667025CompleteK09065COG0078Firmicutesunknown98.9998.2478.17
ygeW1659092CompleteK09065COG0078FirmicutesAnaerotruncus98.9998.9977.41
ygeW1628605CompleteK09065COG0078FirmicutesPseudoflavonifractor98.4997.7677.55
ygeW1668150CompleteK09065COG0078Firmicutesunknown98.9999.2476.9
ygeW1670445CompleteK09065COG0078Firmicutesunknown99.599.7576.52
ygeW1661497CompleteK09065COG0078FirmicutesAnaerotruncus99.599.576.77
ygeW1646211CompleteK09065COG0078FirmicutesPseudoflavonifractor97.9997.7478.21
ygeW1457106Lack 5'-endK09065COG0078FirmicutesEubacterium99.7594.376.83
ygeW1669097CompleteK09065COG0078Firmicutesunknown98.9999.2475.89
ygeW1667774CompleteK09065COG0078FirmicutesRuminococcus99.2599.576.96
ygeW1632442CompleteK00611;K09065COG0078unknownunknown99.7599.076.57
ygeW1589148Lack 5'-endK09065COG0078FirmicutesBlautia99.2597.5376.96
ygeW1667982CompleteK09065COG0078FirmicutesBlautia97.7496.9878.15
ygeW1662563CompleteK09065COG0078FirmicutesBlautia99.2599.576.71
ygeW1669156CompleteK09065COG0078Firmicutesunknown99.2599.576.2
ygeW1661773CompleteK09065COG0078FirmicutesClostridium99.599.7575.76
ygeW1661564CompleteK09065COG0078FirmicutesClostridium99.2599.2576.2
ygeW1654857CompleteK09065COG0078FirmicutesCoprococcus98.9998.9976.4
ygeW1531697CompleteK09065COG0078Firmicutesunknown99.2595.8776.46
ygeW1670330CompleteK09065COG0078FirmicutesClostridium99.599.7575.25
ygeW1665723CompleteK09065COG0078FirmicutesClostridium99.599.7575.51
ygeW1671603CompleteK09065COG0078FirmicutesClostridium99.599.7575.25
ygeW1663897CompleteK09065COG0078FirmicutesBlautia99.599.7575.76
ygeW1670627CompleteK09065COG0078Firmicutesunknown97.2497.4877.78
ygeW1670442CompleteK09065COG0078FirmicutesClostridium99.599.7575.51
ygeW1525384Lack 5'-endK09065COG0078FirmicutesPseudoflavonifractor100.096.3775.38
ygeW1666871CompleteK09065COG0078FirmicutesBlautia99.2599.575.7
ygeW1668685CompleteK09065COG0078FirmicutesCoprococcus99.599.7575.25
ygeW1664306CompleteK09065COG0078FirmicutesClostridium99.599.7575.76
ygeW1622795Lack 5'-endK09065COG0078FirmicutesBlautia99.2598.2676.2
ygeW1599587CompleteK09065COG0078FirmicutesPseudoflavonifractor99.2597.7775.95
ygeW1667860CompleteK09065COG0078FirmicutesClostridium99.599.7575.76
ygeW1665553CompleteK09065COG0078FirmicutesClostridium99.599.7575.25
ygeW1665957CompleteK09065COG0078FirmicutesClostridium99.599.7575.25
ygeW1666821CompleteK09065COG0078FirmicutesBlautia99.599.7575.51
ygeW1522333Lack 5'-endK09065COG0078unknownunknown99.7596.1375.57
ygeW1262748CompleteK09065COG0078FirmicutesRuminococcus99.2588.5776.2
ygeW1665678CompleteK09065COG0078FirmicutesBlautia99.2599.575.7
ygeW1820794Lack 3'-endK09065COG0078FirmicutesBlautia94.9798.9578.84
ygeW1651683CompleteK09065COG0078FirmicutesPseudoflavonifractor98.4997.2476.79
ygeW1666601CompleteK09065COG0078FirmicutesBlautia99.599.7575.25
ygeW1680521CompleteK09065COG0078unknownunknown97.7497.2276.86
ygeW1440763CompleteK09065COG0078FirmicutesBlautia99.593.6275.25
ygeW1795679Lack 3'-endK09065COG0078FirmicutesPseudoflavonifractor93.7296.8880.16
ygeW1654057CompleteK09065COG0078Firmicutesunknown93.4793.4780.11
ygeW1655382CompleteK09065COG0078Firmicutesunknown93.4793.4780.11
ygeW1659736CompleteK09065COG0078FirmicutesClostridium96.4896.4877.6
ygeW1668239CompleteK09065COG0078FirmicutesClostridium99.599.7574.75
ygeW1666362CompleteK09065COG0078FirmicutesVeillonella98.9999.2476.14
ygeW1724769Lack 3'-endK09065COG0078unknownunknown98.49100.076.02
ygeW1652178CompleteK00611COG0078Firmicutesunknown98.9998.9975.89
ygeW1666166CompleteK09065COG0078Firmicutesunknown97.2497.4877.0
ygeW1657021CompleteK09065COG0078FirmicutesClostridium96.4896.4877.34
ygeW1671505CompleteK09065COG0078FirmicutesClostridium98.9999.2475.63
ygeW1658337CompleteK09065COG0078Firmicutesunknown98.9998.9974.62
ygeW1670028CompleteK09065COG0078unknownunknown99.599.7575.25
ygeW1669708CompleteK09065COG0078Firmicutesunknown97.2497.4877.26
ygeW1655911CompleteK09065COG0078FirmicutesPseudoflavonifractor97.2497.4977.58
ygeW1630099Lack 5'-endK09065COG0078FirmicutesVeillonella98.9998.2575.89
ygeW1658650CompleteK09065COG0078FirmicutesBlautia98.7498.7475.06
ygeW1668534CompleteK09065COG0078FirmicutesVeillonella98.9999.2476.14
ygeW1877096Lack 3'-endK09065COG0078FirmicutesClostridium94.4799.7377.93
ygeW1710794CompleteK09065COG0078FirmicutesPseudoflavonifractor97.9999.2475.9
ygeW1738024Lack 5'-endK09065COG0078FirmicutesPseudoflavonifractor96.9898.9775.91
ygeW1664781CompleteK09065COG0078FirmicutesClostridium98.9999.2475.38
ygeW1658040CompleteK09065COG0078FirmicutesBlautia98.9998.9974.37
ygeW1593202Lack 5'-endK09065COG0078FirmicutesBlautia98.4995.875.26
ygeW1671576CompleteK09065COG0078FirmicutesVeillonella98.9999.2476.14
ygeW1634648CompleteK09065COG0078Firmicutesunknown98.2497.7575.7
ygeW1658834CompleteK09065COG0078FirmicutesPseudoflavonifractor100.0100.075.63
ygeW1665285CompleteK00611COG0078Spirochaetesunknown99.599.7575.51
ygeW1655256CompleteK09065COG0078ProteobacteriaBilophila98.2498.2475.19
ygeW1508710CompleteK09065COG0078Firmicutesunknown95.4891.5776.84
ygeW1660274CompleteK09065COG0078FirmicutesPseudoflavonifractor98.2498.2474.94
ygeW1668628CompleteK09065COG0078Firmicutesunknown98.9999.2474.37
ygeW1663659CompleteK09065COG0078Firmicutesunknown99.599.7576.01
ygeW1885493Lack 5'-endK09065COG0078FirmicutesClostridium93.9799.7378.07
ygeW1665408CompleteK09065COG0078Firmicutesunknown98.9999.2474.11
ygeW1602788CompleteK00611COG0078FirmicutesAnaerococcus99.7598.2773.8
ygeW1637438CompleteK09065COG0078FirmicutesPseudoflavonifractor98.2497.7573.91
ygeW1639866CompleteK09065COG0078FirmicutesMegasphaera96.9896.574.09
ygeW1535236CompleteK13252COG0078FirmicutesPseudoflavonifractor98.4995.1572.7
ygeW1661959CompleteK09065COG0078unknownunknown97.2497.4874.94
ygeW1677598CompleteK09065COG0078FirmicutesOscillibacter99.5100.072.47
ygeW1669076CompleteK09065COG0078FirmicutesPseudoflavonifractor95.4895.7275.0
ygeW1665718CompleteK09065COG0078FirmicutesPseudoflavonifractor98.9999.2473.1
ygeW1664415CompleteK09065COG0078unknownunknown99.2599.572.15
ygeW1662403CompleteK09065COG0078FirmicutesPseudoflavonifractor95.4895.7275.0
ygeW1670424CompleteK09065COG0078Firmicutesunknown98.9999.2472.84
ygeW1646288CompleteK09065COG0078Firmicutesunknown97.2496.9974.42
ygeW1666512CompleteK09065COG0078FirmicutesMegasphaera97.2497.4872.87
ygeW1654428CompleteK09065COG0078ProteobacteriaBilophila98.2498.2471.87
ygeW1632824CompleteK09065COG0078Firmicutesunknown98.9998.572.34
ygeW1441637CompleteK09065COG0078Firmicutesunknown98.9993.1472.59
ygeW1667585CompleteK09065COG0078Firmicutesunknown98.9999.2472.08
ygeW1668996CompleteK09065COG0078Firmicutesunknown98.9999.2472.59
ygeW1662069CompleteK09065COG0078FirmicutesOscillibacter98.9999.2472.08
ygeW1673341CompleteK09065COG0078FirmicutesOscillibacter99.5100.071.46
ygeW1666559CompleteK09065COG0078FirmicutesMegasphaera97.2497.4872.61
ygeW1670047CompleteK09065COG0078Firmicutesunknown98.9999.2470.81
ygeW1663526CompleteK09065COG0078Firmicutesunknown98.9999.2472.08
ygeW1677643CompleteK09065COG0078FirmicutesOscillibacter99.5100.070.96
ygeW1663011CompleteK09065COG0078FirmicutesMegasphaera97.2497.4872.35
ygeW1663386CompleteK09065COG0078FirmicutesPseudoflavonifractor98.9999.2471.83
ygeW1674966CompleteK09065COG0078FirmicutesOscillibacter99.5100.070.45
ygeW1846201CompleteK09065COG0078Firmicutesunknown94.4799.2174.73
ygeW1662910CompleteK09065COG0078Firmicutesunknown98.9999.2471.83
ygeW1677224CompleteK09065COG0078FirmicutesOscillibacter99.5100.070.2
ygeW1734591Lack 3'-endK09065COG0078Firmicutesunknown95.4897.1973.95
ygeW1660515CompleteK09065COG0078unknownunknown96.9896.9872.02
ygeW1665975CompleteK09065COG0078Firmicutesunknown98.9999.2471.32
ygeW1675447CompleteK09065COG0078FirmicutesOscillibacter99.5100.070.96
ygeW1618419Lack 5'-endK09065COG0078Firmicutesunknown98.9998.0171.32
ygeW1680164CompleteK09065COG0078Firmicutesunknown95.4895.9672.63
ygeW1657848Lack 5'-endK09065COG0078Firmicutesunknown98.9998.9970.81
ygeW1668942CompleteK00611COG0078unknownunknown98.9999.2471.07
ygeW1662201CompleteK09065COG0078Firmicutesunknown98.9999.2471.07
ygeW1664397CompleteK09065COG0078Firmicutesunknown98.9999.2470.81
ygeW1668670CompleteK09065COG0078Firmicutesunknown98.9999.2471.32
ygeW1664375CompleteK09065COG0078unknownunknown98.9999.2471.32
ygeW1469213CompleteK09065COG0078unknownunknown98.9994.0371.32
ygeW1676785CompleteK09065COG0078Firmicutesunknown95.4895.9672.11
ygeW1944443Lack 3'-endK09065COG0078Firmicutesunknown91.4698.3875.82
ygeW1663721CompleteK00611;K09065COG0078Firmicutesunknown98.9999.2470.56
ygeW1664570CompleteK09065COG0078Firmicutesunknown95.4895.7272.89
ygeW1585551CompleteK00611;K09065COG0078unknownunknown95.4893.672.37
ygeW2085853Lack 5'-endK09065COG0078Firmicutesunknown89.299.7278.03
ygeW1608750CompleteK09065COG0078FirmicutesMegasphaera98.9997.7769.04
ygeW2254533Lack 5'-endK09065COG0078FirmicutesPseudoflavonifractor85.68100.078.3
ygeW2071700Lack 3'-endK00611COG0078Firmicutesunknown89.95100.073.18
ygeW2322539Lack 3'-endK00611COG0078FirmicutesPseudoflavonifractor84.67100.076.26
ygeW1684418CompleteK00611COG0078ProteobacteriaKlebsiella99.2599.7565.32
ygeW1518725CompleteK00611COG0078ProteobacteriaEscherichia98.9994.9365.48
ygeW2219759Lack 3'-endK00611COG0078Firmicutesunknown86.68100.073.33
ygeW1691425CompleteK00611COG0078Proteobacteriaunknown99.2599.7565.32
ygeW1691276CompleteK00611COG0078ProteobacteriaKlebsiella99.2599.7564.81
ygeW2357263Lack 3'-endK09065COG0078FirmicutesPseudoflavonifractor79.995.2178.3
ygeW1687860CompleteK00611COG0078unknownunknown99.2599.7563.8
ygeW1689452CompleteK00611COG0078ProteobacteriaEnterobacter99.2599.7563.8
ygeW2855751Lack both endsK09065COG0078FirmicutesBlautia75.13100.082.61
ygeW2564671Lack 5'-endK09065COG0078FirmicutesEubacterium79.1599.3779.37
ygeW1180764Lack 5'-endK00611COG0078unknownunknown91.9679.8768.58
ygeW1575252Lack 5'-endK00611COG0078ActinobacteriaCollinsella97.9996.0763.94
ygeW1412033CompleteK00611COG0078unknownunknown98.2491.5564.71
ygeW1376594CompleteK00611COG0078unknownunknown97.4988.8665.72
ygeW1648828CompleteK00611COG0078ActinobacteriaCollinsella99.599.562.47
ygeW1642030CompleteK09065COG0078ActinobacteriaAtopobium98.7498.562.94
ygeW1414467CompleteK00611COG0078unknownunknown98.2491.5564.71
ygeW1639865CompleteK09065COG0078Actinobacteriaunknown97.2497.063.66
ygeW2566501Lack both endsK00611COG0078FirmicutesPseudoflavonifractor76.3895.679.93
ygeW2446560Lack 5'-endK09065COG0078Firmicutesunknown81.91100.073.62
ygeW2484435Lack 5'-endK09065COG0078FirmicutesPseudoflavonifractor76.8894.7479.08
ygeW1567755CompleteK09065COG0078ActinobacteriaCollinsella98.9996.8161.77
ygeW2571100Lack 3'-endK09065COG0078unknownunknown79.9100.073.58
ygeW2728003Lack 5'-endK09065COG0078FirmicutesPseudoflavonifractor76.3899.6777.7
ygeW1639692CompleteK09065COG0078ActinobacteriaCollinsella99.2599.060.1
ygeW1900897Lack 3'-endK09065COG0078ActinobacteriaCollinsella93.72100.063.1
ygeW1628707CompleteK09065COG0078Actinobacteriaunknown98.4998.062.6
ygeW2971991Lack both endsK09065COG0078FirmicutesPseudoflavonifractor73.37100.079.45
ygeW2823405Lack 3'-endK00611COG0078unknownunknown75.63100.075.75
ygeW1639229CompleteK09065COG0078ActinobacteriaCollinsella99.2599.060.35
ygeW1639492CompleteK09065COG0078ActinobacteriaCollinsella98.9998.7560.76
ygeW2773782Lack 5'-endK09065COG0078FirmicutesPseudoflavonifractor73.3796.3775.34
ygeW3041335Lack both endsK00611COG0078FirmicutesOscillibacter71.6199.373.68
ygeW2828289Lack 3'-endK09065COG0078FirmicutesPseudoflavonifractor72.3695.6874.31
ygeW3046028Lack 5'-endK09065COG0078Firmicutesunknown71.1198.9571.38
ygeW2237776CompleteK00611COG0078Firmicutesunknown77.8983.6735.48
ygeW2398839CompleteK00611COG0078unknownunknown74.3778.7933.56
ygeW2399377CompleteK00611COG0078unknownunknown89.4597.2730.19
ygeW2260838CompleteK00611COG0078unknownunknown89.4594.1330.49
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumBacteroidetes-0.5711.57e-1622.49e-160
classBacteroidia-0.5711.58e-1622.49e-160
orderBacteroidales-0.5711.58e-1622.49e-160
orderCoriobacteriales0.4882.07e-1121.95e-110
familyCoriobacteriaceae0.4882.07e-1121.95e-110
genusBlautia0.461.7e-981.34e-96
phylumActinobacteria0.4486.42e-933.79e-91
classActinobacteria0.4486.42e-933.79e-91
familyBacteroidaceae-0.4164.99e-792.36e-77
genusBacteroides-0.4164.99e-792.36e-77
speciesRuminococcus_torques0.383.59e-651.54e-63
familyActinomycetaceae0.378.71e-623.43e-60
genusActinomyces0.3662.31e-608.39e-59
phylumFirmicutes0.3654.65e-601.57e-58
classErysipelotrichia0.3624.44e-591.23e-57
orderErysipelotrichales0.3624.44e-591.23e-57
familyErysipelotrichaceae0.3624.44e-591.23e-57
speciesRuminococcus_obeum0.3535.29e-561.39e-54
speciesEubacterium_hallii0.346.89e-521.71e-50
genusCollinsella0.3344.17e-509.84e-49
genusDorea0.3315.87e-491.32e-47
genusSubdoligranulum0.3282.69e-485.77e-47
orderBifidobacteriales0.3275.48e-481.08e-46
familyBifidobacteriaceae0.3275.48e-481.08e-46
orderActinomycetales0.3253.69e-476.97e-46
genusErysipelotrichaceae_noname0.3244.53e-478.22e-46
genusBifidobacterium0.3231.5e-462.62e-45
speciesCollinsella_aerofaciens0.3222.35e-463.96e-45
classClostridia0.327.41e-461.17e-44
orderClostridiales0.327.42e-461.17e-44
speciesSubdoligranulum_unclassified0.3191.23e-451.87e-44
familyRuminococcaceae0.3051.13e-411.67e-40
genusHaemophilus-0.2994.64e-406.64e-39
speciesHaemophilus_parainfluenzae-0.2996.45e-408.95e-39
orderPasteurellales-0.2981.5e-391.97e-38
familyPasteurellaceae-0.2981.5e-391.97e-38
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2971.98e-392.53e-38
speciesRoseburia_inulinivorans-0.2972.9e-393.6e-38
speciesErysipelotrichaceae_bacterium_21_30.2911.01e-371.22e-36
genusRuminococcus0.2831.07e-351.26e-34
genusMethanobrevibacter0.284.89e-355.63e-34
genusAnaerostipes0.2781.42e-341.6e-33
classMethanobacteria0.2772.52e-342.64e-33
orderMethanobacteriales0.2772.52e-342.64e-33
familyMethanobacteriaceae0.2772.52e-342.64e-33
speciesRuminococcus_sp_5_1_39BFAA0.2764.53e-344.65e-33
orderLactobacillales0.2757.79e-347.82e-33
genusEscherichia0.2741.3e-331.28e-32
classBacilli0.2741.94e-331.87e-32
genusOlsenella0.2733.24e-333.06e-32
speciesEscherichia_coli0.2723.95e-333.66e-32
phylumEuryarchaeota0.2725.56e-335.05e-32
speciesMethanobrevibacter_smithii0.2725.71e-335.09e-32
speciesDorea_longicatena0.2716.96e-336.08e-32
speciesBacteroides_vulgatus-0.271.73e-321.48e-31
genusLachnospiraceae_noname0.2675.28e-324.45e-31
speciesStreptococcus_thermophilus0.2676.79e-325.62e-31
genusRoseburia-0.2677.75e-326.31e-31
speciesClostridium_leptum0.2669.2e-327.36e-31
familySutterellaceae-0.2661.25e-319.83e-31
orderBurkholderiales-0.2634.96e-313.84e-30
classBetaproteobacteria-0.2621.08e-308.22e-30
speciesBacteroides_ovatus-0.2621.11e-308.32e-30
speciesErysipelotrichaceae_bacterium_2_2_44A0.2621.19e-308.78e-30
speciesDorea_formicigenerans0.2531.31e-289.51e-28
genusGordonibacter0.2491.01e-277.12e-27
speciesGordonibacter_pamelaeae0.2491.01e-277.12e-27
speciesErysipelotrichaceae_bacterium_6_1_450.2481.19e-277.72e-27
phylumVerrucomicrobia0.2481.21e-277.72e-27
classVerrucomicrobiae0.2481.21e-277.72e-27
orderVerrucomicrobiales0.2481.21e-277.72e-27
familyVerrucomicrobiaceae0.2481.21e-277.72e-27
genusAkkermansia0.2481.21e-277.72e-27
speciesAkkermansia_muciniphila0.2481.21e-277.72e-27
familyStreptococcaceae0.2481.68e-271.06e-26
familyLachnospiraceae0.2454.89e-273.04e-26
speciesBifidobacterium_longum0.2455.11e-273.13e-26
speciesOlsenella_unclassified0.2431.53e-269.26e-26
orderEnterobacteriales0.2413.53e-262.08e-25
familyEnterobacteriaceae0.2413.53e-262.08e-25
speciesEggerthella_lenta0.246.57e-263.83e-25
speciesCoprococcus_catus0.247.62e-264.39e-25
familyBacillales_noname0.2381.87e-251.05e-24
genusGemella0.2381.87e-251.05e-24
genusStreptococcus0.2382.08e-251.16e-24
familyEnterococcaceae0.2364.9e-252.69e-24
genusEnterococcus0.2356.13e-253.33e-24
speciesCoprococcus_comes0.2358.66e-254.64e-24
genusAdlercreutzia0.2322.6e-241.36e-23
speciesAdlercreutzia_equolifaciens0.2322.6e-241.36e-23
speciesBacteroides_xylanisolvens-0.2323.41e-241.77e-23
familyClostridiaceae0.237.63e-243.91e-23
genusParabacteroides-0.2291.01e-235.13e-23
genusClostridium0.2291.05e-235.27e-23
speciesAnaerostipes_hadrus0.2291.4e-236.96e-23
genusSolobacterium0.2264.76e-232.32e-22
speciesSolobacterium_moorei0.2264.76e-232.32e-22
speciesBacteroides_thetaiotaomicron-0.2241.14e-225.49e-22
genusAnaerotruncus0.2222.27e-221.08e-21
speciesSubdoligranulum_sp_4_3_54A2FAA0.2198.07e-223.81e-21
genusCoprococcus0.2172.04e-219.53e-21
genusEggerthella0.2172.14e-219.9e-21
genusCoprobacillus0.2172.3e-211.05e-20
speciesStreptococcus_sanguinis0.2162.86e-211.3e-20
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speciesClostridium_ramosum0.2156.43e-212.86e-20
orderBacillales0.2148.97e-213.96e-20
genusPantoea0.213.83e-201.66e-19
speciesPantoea_unclassified0.213.83e-201.66e-19
speciesBacteroides_stercoris-0.2097.05e-203.03e-19
speciesEscherichia_unclassified0.2037.23e-193.07e-18
speciesBifidobacterium_adolescentis0.22.53e-181.07e-17
speciesEggerthella_unclassified0.1979.66e-184.03e-17
speciesPropionibacterium_freudenreichii0.1924.73e-171.96e-16
familyLactobacillaceae0.1917.62e-173.13e-16
genusPropionibacterium0.199.98e-174.06e-16
speciesEubacterium_siraeum0.1891.74e-167.02e-16
genusLactobacillus0.1882.56e-161.02e-15
genusPeptostreptococcus0.1873.75e-161.49e-15
familyClostridiales_Family_XI_Incertae_Sedis0.1856.54e-162.57e-15
genusPseudoflavonifractor0.1812.66e-151.03e-14
speciesPseudoflavonifractor_capillosus0.1812.66e-151.03e-14
speciesLactobacillus_rhamnosus0.1795.39e-152.07e-14
speciesCoprobacillus_unclassified0.1795.64e-152.15e-14
speciesStreptococcus_gordonii0.1796.02e-152.27e-14
speciesEnterococcus_faecium0.1771.28e-144.79e-14
speciesRoseburia_intestinalis-0.1771.31e-144.87e-14
speciesStreptococcus_mutans0.1762.02e-147.45e-14
speciesClostridium_hathewayi0.1752.66e-149.73e-14
speciesBifidobacterium_dentium0.1752.73e-149.91e-14
speciesAnaerotruncus_unclassified0.1743.21e-141.16e-13
speciesStreptococcus_parasanguinis0.1735.86e-142.1e-13
genusRothia0.1726.11e-142.17e-13
speciesBifidobacterium_animalis0.1727e-142.47e-13
familyMicrococcaceae0.1727.18e-142.51e-13
speciesStreptococcus_anginosus0.171.28e-134.44e-13
classGammaproteobacteria0.171.48e-135.1e-13
speciesEubacterium_ramulus0.1657.91e-132.71e-12
speciesBlautia_producta0.1641.09e-123.7e-12
speciesLactobacillus_delbrueckii0.1641.11e-123.74e-12
speciesStreptococcus_vestibularis0.1631.23e-124.12e-12
speciesLactobacillus_casei_paracasei0.1621.76e-125.85e-12
speciesStreptococcus_salivarius0.1612.16e-127.13e-12
speciesEnterococcus_faecalis0.163.35e-121.09e-11
speciesEubacterium_eligens-0.163.35e-121.09e-11
genusLeuconostoc0.1595.07e-121.64e-11
genusParvimonas0.1585.47e-121.76e-11
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speciesVeillonella_unclassified-0.1586.23e-121.97e-11
speciesBacteroides_uniformis-0.1561.25e-113.93e-11
speciesLachnospiraceae_bacterium_5_1_63FAA0.1551.84e-115.75e-11
speciesPeptostreptococcus_stomatis0.1541.95e-116.06e-11
genusFaecalibacterium-0.1542.31e-117.08e-11
speciesFaecalibacterium_prausnitzii-0.1542.31e-117.08e-11
familyPorphyromonadaceae-0.1532.66e-118.1e-11
speciesParabacteroides_distasonis-0.1532.86e-118.65e-11
genusParasutterella-0.1514.91e-111.47e-10
speciesParasutterella_excrementihominis-0.1514.91e-111.47e-10
speciesRothia_mucilaginosa0.1515.54e-111.64e-10
genusLactococcus0.1481.19e-103.51e-10
speciesBlautia_hydrogenotrophica0.1481.28e-103.75e-10
speciesRuminococcus_bromii0.1471.77e-105.16e-10
speciesStreptococcus_mitis_oralis_pneumoniae0.1462.14e-106.2e-10
genusVeillonella-0.1462.27e-106.53e-10
speciesLactococcus_lactis0.1462.34e-106.69e-10
genusSiphoviridae_noname0.1444.15e-101.18e-09
speciesEubacterium_limosum0.1444.43e-101.25e-09
speciesBacteroides_plebeius-0.141.11e-093.12e-09
speciesLachnospiraceae_bacterium_7_1_58FAA0.141.33e-093.71e-09
speciesMegamonas_funiformis-0.1391.38e-093.83e-09
speciesGemella_morbillorum0.1391.45e-094e-09
genusHoldemania0.1391.65e-094.53e-09
speciesMegamonas_rupellensis-0.1382.15e-095.87e-09
speciesVeillonella_atypica-0.1373.05e-098.27e-09
familyPrevotellaceae-0.1354.16e-091.12e-08
familyOxalobacteraceae0.1345.74e-091.54e-08
speciesMegamonas_unclassified-0.1346.24e-091.66e-08
genusMegamonas-0.1337.35e-091.95e-08
speciesVeillonella_dispar-0.1337.59e-092e-08
genusOxalobacter0.1338.79e-092.29e-08
speciesOxalobacter_formigenes0.1338.79e-092.29e-08
speciesLachnospiraceae_bacterium_5_1_57FAA0.1329.43e-092.45e-08
familyBurkholderiales_noname-0.1311.23e-083.17e-08
genusBurkholderiales_noname-0.131.82e-084.64e-08
speciesBurkholderiales_bacterium_1_1_47-0.131.82e-084.64e-08
genusDesulfovibrio0.1292.11e-085.35e-08
speciesAnaerotruncus_colihominis0.1292.18e-085.5e-08
speciesLachnospiraceae_bacterium_3_1_46FAA0.1282.73e-086.85e-08
speciesRoseburia_unclassified0.1282.99e-087.47e-08
familyPropionibacteriaceae0.1273.5e-088.69e-08
speciesVeillonella_parvula-0.1264.68e-081.16e-07
phylumViruses_noname0.1256.49e-081.59e-07
classViruses_noname0.1256.49e-081.59e-07
speciesEubacterium_cylindroides0.1246.94e-081.69e-07
familyLeuconostocaceae0.1221.08e-072.61e-07
speciesLachnospiraceae_bacterium_1_4_56FAA0.1211.49e-073.59e-07
speciesFusobacterium_mortiferum-0.1211.61e-073.86e-07
speciesBifidobacterium_catenulatum0.1192.39e-075.7e-07
phylumProteobacteria0.1182.94e-076.97e-07
speciesLactobacillus_gasseri0.1183.1e-077.32e-07
speciesPeptostreptococcus_anaerobius0.1183.12e-077.33e-07
speciesHoldemania_filiformis0.1183.2e-077.48e-07
genusPorphyromonas0.1174.13e-079.6e-07
speciesEggerthella_sp_1_3_56FAA0.1165.33e-071.23e-06
speciesClostridium_clostridioforme0.1155.66e-071.3e-06
speciesClostridium_bolteae0.1156.59e-071.51e-06
speciesAlistipes_sp_AP110.1156.74e-071.54e-06
familySiphoviridae0.1148.24e-071.87e-06
speciesEubacterium_biforme0.1138.65e-071.95e-06
speciesMegamonas_hypermegale-0.1121.12e-062.52e-06
genusActinobacillus-0.1121.25e-062.78e-06
speciesActinobacillus_unclassified-0.1121.25e-062.78e-06
speciesRuminococcus_sp_JC3040.1121.27e-062.81e-06
speciesParabacteroides_merdae-0.1121.32e-062.91e-06
genusPrevotella-0.1111.38e-063.03e-06
speciesLactobacillus_plantarum0.111.77e-063.87e-06
speciesPrevotella_stercorea-0.112.01e-064.37e-06
speciesStreptococcus_australis0.1092.31e-065e-06
speciesFusobacterium_nucleatum0.1092.48e-065.35e-06
orderCaudovirales0.1083e-066.44e-06
speciesBacteroides_massiliensis-0.1064.02e-068.59e-06
speciesLactococcus_phage_P6800.1038.55e-061.82e-05
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1029.92e-062.1e-05
genusMitsuokella0.1021.05e-052.21e-05
speciesBacteroides_dorei-0.1011.19e-052.5e-05
speciesMitsuokella_unclassified0.11.34e-052.8e-05
genusPeptoniphilus0.11.57e-053.26e-05
speciesPorphyromonas_asaccharolytica0.0991.88e-053.89e-05
speciesOdoribacter_splanchnicus-0.0991.98e-054.08e-05
speciesPrevotella_copri-0.0982.15e-054.41e-05
speciesCoprobacillus_sp_D60.0972.5e-055.11e-05
familyPeptostreptococcaceae0.0962.96e-056.02e-05
genusOdoribacter-0.0963.46e-057.01e-05
genusRuminococcaceae_noname0.0963.51e-057.05e-05
speciesRuminococcaceae_bacterium_D160.0963.51e-057.05e-05
speciesBacteroides_finegoldii-0.0954.2e-058.4e-05
genusClostridiales_noname0.0935.78e-050.000115
speciesPorphyromonas_uenonis0.0935.83e-050.000116
speciesLactobacillus_fermentum0.0917.61e-050.00015
speciesBacteroides_faecis-0.0918.6e-050.000169
speciesAlistipes_indistinctus0.099.15e-050.000179
speciesClostridium_asparagiforme0.0890.0001070.000209
speciesLactobacillus_oris0.0890.0001090.000212
speciesBacteroides_nordii-0.0890.0001190.00023
speciesClostridiales_bacterium_1_7_47FAA0.0890.0001240.000239
orderPseudomonadales0.0890.0001260.000242
genusMorganella0.0880.000150.000285
speciesMorganella_morganii0.0880.000150.000285
familyBacteroidales_noname0.0860.0001910.000359
genusBacteroidales_noname0.0860.0001910.000359
speciesBacteroidales_bacterium_ph80.0860.0001910.000359
speciesCoprobacillus_sp_29_10.0860.0002020.000378
speciesAcidaminococcus_fermentans0.0860.0002060.000384
speciesAlistipes_senegalensis0.0850.0002190.000407
familyAcidaminococcaceae0.0850.0002350.000435
familyClostridiales_noname0.0840.0002760.000509
speciesAlistipes_putredinis-0.0840.0002810.000516
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0830.000310.000567
genusDialister0.0830.0003260.000594
speciesDesulfovibrio_piger0.0830.0003370.000612
speciesOscillibacter_sp_KLE_1728-0.0820.0004130.000747
genusAcidaminococcus0.0810.000470.000847
speciesOdoribacter_laneus0.0810.0004910.000881
genusMethanosphaera0.080.0005180.000923
speciesMethanosphaera_stadtmanae0.080.0005180.000923
speciesLactobacillus_amylovorus0.080.0005690.00101
speciesClostridium_symbiosum0.0790.0006480.00115
speciesBifidobacterium_bifidum0.0780.0007370.0013
speciesBacteroides_caccae-0.0780.0007780.00137
speciesAnaerostipes_unclassified0.0770.0008420.00147
speciesDialister_invisus0.0760.001020.00178
speciesKlebsiella_oxytoca0.0760.001030.00179
speciesLactobacillus_crispatus0.0730.001690.00292
genusSutterellaceae_unclassified-0.0720.001740.003
speciesStreptococcus_lutetiensis0.0720.001790.00307
classDeltaproteobacteria0.0710.002090.00355
orderDesulfovibrionales0.0710.002090.00355
familyDesulfovibrionaceae0.0710.002090.00355
genusCatenibacterium0.0710.002190.00369
speciesCatenibacterium_mitsuokai0.0710.002190.00369
speciesLachnospiraceae_bacterium_8_1_57FAA-0.070.002340.00393
speciesParaprevotella_xylaniphila-0.070.00260.00435
speciesLachnospiraceae_bacterium_6_1_63FAA0.0690.00270.0045
genusPeptostreptococcaceae_noname0.0690.002870.00477
speciesBacteroides_coprocola-0.0670.003660.00606
speciesMegasphaera_elsdenii0.0670.00380.00627
genusCoriobacteriaceae_noname0.0660.004030.00663
speciesCoriobacteriaceae_bacterium_phI0.0660.004490.00736
speciesLactobacillus_vaginalis0.0650.004750.00776
speciesKlebsiella_sp_MS_92_30.0650.005210.00848
speciesClostridium_bartlettii0.0640.005380.00873
speciesLachnospiraceae_bacterium_1_1_57FAA0.0640.00550.00889
speciesBacteroides_fragilis-0.0640.006010.00966
speciesLactococcus_garvieae0.0630.006020.00966
speciesAlistipes_shahii-0.0630.00610.00976
speciesDorea_unclassified-0.0630.006240.00995
speciesRuminococcus_champanellensis0.0630.006730.0107
speciesBacteroides_oleiciplenus-0.0620.006980.0111
genusButyrivibrio0.0620.007450.0118
genusBarnesiella0.0610.007820.0123
speciesBarnesiella_intestinihominis0.0610.007820.0123
speciesDesulfovibrio_desulfuricans0.0610.008140.0127
genusSutterella-0.060.009410.0146
genusButyricicoccus0.060.009460.0146
speciesButyricicoccus_pullicaecorum0.060.009460.0146
speciesClostridium_spiroforme0.060.009580.0148
speciesBacteroides_salyersiae-0.060.009730.015
speciesClostridium_sp_KLE_17550.0580.01160.0178
speciesButyrivibrio_crossotus0.0580.01220.0186
speciesLachnospiraceae_bacterium_2_1_58FAA0.0580.01240.0189
speciesBifidobacterium_breve0.0570.01330.0202
speciesHaemophilus_sputorum-0.0570.01350.0204
speciesParabacteroides_unclassified-0.0570.01360.0205
speciesLactococcus_phage_jm20.0570.01390.0209
genusPhascolarctobacterium0.0570.01430.0214
speciesPhascolarctobacterium_succinatutens0.0570.01430.0214
genusSlackia0.0560.01520.0226
speciesStreptococcus_phage_Sfi210.0560.01560.0232
speciesBacteroides_cellulosilyticus-0.0550.0180.0266
speciesCoprococcus_eutactus0.0540.01970.0291
speciesSutterella_wadsworthensis-0.0540.020.0294
familyVeillonellaceae-0.0520.0240.0352
genusProteus0.0520.02440.0357
speciesFusobacterium_varium-0.0520.02580.0376
speciesBacteroides_sp_2_1_22-0.0510.02830.0411
speciesRuminococcus_gnavus0.0510.02880.0417
orderViruses_noname0.050.03110.0449
speciesWeissella_cibaria0.050.03120.0449
genusC2likevirus0.0490.03310.0475
speciesAlistipes_unclassified0.0490.03490.0499
familyCampylobacteraceae0.0490.03540.0505
speciesHoldemania_unclassified0.0480.03620.0515
speciesEnterobacter_aerogenes-0.0480.03710.0526
speciesC2likevirus_unclassified0.0480.0390.0551
speciesBacteroides_intestinalis-0.0470.04030.0568
familyRikenellaceae-0.0470.04120.0577
genusAlistipes-0.0470.04120.0577
speciesBilophila_wadsworthia0.0470.04160.0581
speciesAcidaminococcus_unclassified0.0460.04450.062
speciesLactobacillus_mucosae0.0460.04520.0627
speciesEubacterium_sp_3_1_310.0460.04570.0633
speciesBacteroides_clarus-0.0460.04640.064
speciesLactobacillus_reuteri0.0450.04950.0681
genusCampylobacter0.0450.05040.0692
familyEubacteriaceae0.0450.05370.0735
genusEubacterium0.0440.05620.0767
speciesAcidaminococcus_intestini0.0440.05640.0767
speciesKlebsiella_pneumoniae-0.0440.05710.0774
genusAggregatibacter-0.0440.05920.0801
genusEnterobacter-0.0440.05970.0805
classEpsilonproteobacteria0.0430.06350.0851
orderCampylobacterales0.0430.06350.0851
speciesRuminococcus_callidus-0.0430.0640.0856
speciesErysipelotrichaceae_bacterium_3_1_530.0420.06720.0896
phylumFusobacteria-0.0410.07630.101
classFusobacteriia-0.0410.07630.101
orderFusobacteriales-0.0410.07630.101
speciesRuminococcus_lactaris0.0410.07710.102
speciesEubacterium_rectale-0.0390.08950.118
speciesLactobacillus_acidophilus0.0390.09150.12
genusLambdalikevirus0.0390.0920.12
speciesClostridium_sp_L2_500.0390.0920.12
familyFusobacteriaceae-0.0380.1010.131
genusFusobacterium-0.0370.1060.137
speciesProteus_mirabilis0.0360.1160.15
speciesEnterobacter_cloacae-0.0360.1180.152
speciesAggregatibacter_segnis-0.0350.1280.165
familyStaphylococcaceae0.0340.1440.185
speciesKlebsiella_phage_KP36-0.0330.1480.189
phylumSynergistetes0.0330.1560.197
classSynergistia0.0330.1560.197
orderSynergistales0.0330.1560.197
familySynergistaceae0.0330.1560.197
speciesCollinsella_intestinalis-0.0320.1690.213
speciesParabacteroides_johnsonii-0.0320.1720.216
speciesSutterella_parvirubra-0.0310.1810.227
speciesBacteroides_sp_4_3_47FAA-0.030.1980.248
genusParaprevotella-0.0290.2020.252
speciesOscillibacter_unclassified0.0290.2030.253
speciesKlebsiella_unclassified0.0290.2060.256
speciesLactococcus_phage_phi70.0290.210.26
genusBilophila0.0290.2130.263
speciesOdoribacter_unclassified-0.0290.2140.264
genusStaphylococcus0.0280.2180.268
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0280.2330.286
orderAeromonadales0.0280.2340.286
speciesCoprococcus_sp_ART55_10.0270.2460.3
familyOscillospiraceae0.0270.2490.301
genusWeissella0.0270.2490.301
genusOscillibacter0.0270.2490.301
speciesEubacterium_dolichum0.0260.2610.315
speciesTuricibacter_sanguinis0.0260.2620.315
speciesBilophila_unclassified0.0260.2640.317
speciesParaprevotella_unclassified-0.0250.2780.333
speciesParaprevotella_clara-0.0250.2790.333
speciesAlistipes_onderdonkii0.0250.2810.335
genusMegasphaera0.0250.2830.336
speciesParabacteroides_sp_D130.0240.2950.35
speciesStreptococcus_pasteurianus-0.0230.310.367
genusKlebsiella-0.0230.3160.373
genusTunalikevirus-0.0230.3250.383
speciesFusobacterium_ulcerans-0.0220.3330.391
speciesBacteroides_pectinophilus0.0220.340.398
speciesBacteroides_sp_3_1_19-0.0220.3410.398
speciesStreptococcus_infantarius0.0220.3470.404
speciesParabacteroides_sp_20_30.0220.350.407
speciesLeuconostoc_lactis0.0210.3540.411
speciesMegasphaera_unclassified0.0210.3580.413
speciesBifidobacterium_pseudocatenulatum-0.0210.3580.413
speciesLactobacillus_salivarius0.0210.3640.419
speciesCitrobacter_freundii0.020.3860.443
speciesBacteroides_fluxus-0.020.3890.446
genusCitrobacter0.020.390.446
speciesClostridium_citroniae0.0190.4050.462
speciesCampylobacter_concisus-0.0190.4140.471
speciesEnterobacteria_phage_HK5440.0190.4160.472
speciesCollinsella_tanakaei-0.0190.4180.473
genusClostridiaceae_noname0.0190.4220.475
speciesClostridiaceae_bacterium_JC1180.0190.4220.475
speciesPrevotella_bivia0.0190.4230.475
speciesDialister_succinatiphilus0.0180.4290.481
genusPyramidobacter0.0180.4420.493
speciesPyramidobacter_piscolens0.0180.4420.493
genusMyoviridae_noname-0.0180.4490.5
genusTuricibacter0.0170.4540.503
speciesAlistipes_sp_HGB50.0170.4540.503
speciesCitrobacter_unclassified0.0170.4550.503
genusAcidaminococcaceae_unclassified0.0170.4670.515
speciesLactococcus_phage_936_sensu_lato-0.0160.4920.541
speciesLactobacillus_ruminis-0.0150.520.571
familyMyoviridae0.0140.5310.582
speciesHaemophilus_paraphrohaemolyticus-0.0140.5520.603
speciesButyrivibrio_unclassified0.0130.5640.615
speciesClostridium_perfringens0.0130.5690.619
speciesMitsuokella_multacida0.0130.5730.622
speciesTuricibacter_unclassified0.0130.5880.637
speciesSlackia_piriformis0.0120.5920.639
speciesAlistipes_finegoldii-0.0120.5940.64
genusButyricimonas-0.0120.5990.643
speciesButyricimonas_synergistica-0.0120.5990.643
speciesMegasphaera_micronuciformis0.0120.6170.66
speciesLactobacillus_sanfranciscensis0.0110.6340.677
speciesWeissella_confusa0.010.6510.694
genusFlavonifractor-0.010.6750.716
speciesFlavonifractor_plautii-0.010.6750.716
classNegativicutes-0.0090.6880.726
orderSelenomonadales-0.0090.6880.726
speciesPrevotella_buccae0.0090.7040.742
speciesHoldemania_sp_AP20.0080.7210.758
speciesCollinsella_unclassified-0.0070.7750.813
familyPodoviridae0.0060.790.827
speciesPeptostreptococcaceae_noname_unclassified0.0060.8050.839
familyViruses_noname-0.0060.8070.839
genusViruses_noname-0.0060.8070.839
speciesBacteroides_barnesiae-0.0050.8290.86
speciesBacteroides_sp_1_1_6-0.0040.850.88
speciesClostridium_sp_ATCC_BAA_4420.0040.8590.887
speciesBacteroides_coprophilus-0.0040.8690.896
speciesBacteroides_salanitronis-0.0030.8940.919
speciesBifidobacterium_angulatum0.0030.9070.931
familySuccinivibrionaceae0.0030.9090.931
speciesParabacteroides_goldsteinii-0.0030.9130.933
speciesClostridium_nexile-0.0020.9210.937
speciesEubacterium_ventriosum-0.0020.9210.937
speciesBacteroides_eggerthii0.0020.9340.948
speciesLactococcus_phage_bIL670.0010.9620.974
speciesOscillibacter_sp_KLE_1745-0.0010.9830.994
genusCoprobacter0.00.990.996
speciesCoprobacter_fastidiosus0.00.990.996
genusSuccinatimonas0.00.9970.999
speciesSuccinatimonas_hippei0.00.9970.999
speciesRoseburia_hominis0.01.01.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.1210998311960.0872685425691.38222330385e-0611823.87452
Type II diabetesChina1831850.1245108950620.08542844686989.53110497382e-063141.03771
Liver cirrhosisChina1201140.0979449880230.06614590840870.00137975359636779426.1816
Rheumatoid arthritisChina127980.1084099418630.08858793855810.007408578205398552.85124
Colorectal cancerAustria64350.2214197503460.1815500737790.2643426506731099537.2006
Type II diabetesSweden53920.1482738355230.1482261070450.3612048547751200340.6468
Crohns diseaseSpain17660.1100456940720.1010898002270.7392313098412705689.9618
Ulcerative colitisSpain78660.09708600909930.1010898002270.786671203472544783.9447
ObesityDenmark1691230.0881272270030.09290847844710.9546647300762947096.9057
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382