MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-14 08:28:26 PST
Job id & description: 2184, E coli xanthine dehydrogenase
Query type: protein
Count queries & homologs: 1, 7
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
ecoli337207CompleteK11177COG1529ProteobacteriaEscherichia100.0100.0100.0
ecoli338080CompleteK11177COG1529ProteobacteriaEscherichia99.7399.7376.16
ecoli493454Lack 5'-endK00540COG1529FusobacteriaFusobacterium76.9188.9130.63
ecoli242825Lack 5'-endK00540COG1529unknownunknown84.8480.1730.76
ecoli305236CompleteK00540COG1529Firmicutesunknown84.9782.0630.19
ecoli289006Lack 5'-endK00540COG1529Firmicutesunknown76.7874.7730.38
ecoli299449CompleteK00540COG1529unknownunknown76.7876.0530.34
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyRuminococcaceae0.4093.07e-761.45e-73
phylumBacteroidetes-0.4013.84e-734.66e-71
classBacteroidia-0.4013.95e-734.66e-71
orderBacteroidales-0.4013.95e-734.66e-71
genusAdlercreutzia0.3817.8e-666.14e-64
speciesAdlercreutzia_equolifaciens0.3817.8e-666.14e-64
genusRuminococcus0.3794.52e-653.05e-63
speciesRuminococcus_obeum0.3714.24e-622.5e-60
orderCoriobacteriales0.3611.53e-587.22e-57
familyCoriobacteriaceae0.3611.53e-587.22e-57
classClostridia0.3559.14e-573.6e-55
orderClostridiales0.3559.14e-573.6e-55
speciesCoprococcus_catus0.3474.75e-541.72e-52
genusCoprococcus0.3476.33e-542.13e-52
speciesSubdoligranulum_unclassified0.3382.74e-518.62e-50
genusSubdoligranulum0.3361.17e-503.45e-49
speciesEubacterium_hallii0.3291.55e-484.3e-47
phylumActinobacteria0.3278.34e-482.07e-46
classActinobacteria0.3278.34e-482.07e-46
genusDorea0.3183.8e-458.97e-44
phylumFirmicutes0.316.94e-431.56e-41
speciesCoprococcus_comes0.3091.05e-422.25e-41
speciesDorea_longicatena0.3091.44e-422.96e-41
speciesDorea_formicigenerans0.3075.39e-421.06e-40
speciesRuminococcus_sp_5_1_39BFAA0.3042.28e-414.3e-40
familyBacteroidaceae-0.3012.02e-403.53e-39
genusBacteroides-0.3012.02e-403.53e-39
speciesRuminococcus_bromii0.2941.25e-382.11e-37
speciesBifidobacterium_longum0.2933.18e-385.18e-37
speciesEubacterium_ramulus0.285.66e-358.91e-34
orderBifidobacteriales0.286.12e-359.03e-34
familyBifidobacteriaceae0.286.12e-359.03e-34
genusBifidobacterium0.2798.44e-351.21e-33
speciesCollinsella_aerofaciens0.2716.12e-338.5e-32
genusGordonibacter0.2651.83e-312.4e-30
speciesGordonibacter_pamelaeae0.2651.83e-312.4e-30
familyEubacteriaceae0.262.37e-302.94e-29
speciesClostridium_leptum0.262.37e-302.94e-29
genusEubacterium0.262.75e-303.33e-29
genusCollinsella0.2571.09e-291.29e-28
genusParabacteroides-0.2462.83e-273.26e-26
speciesEubacterium_ventriosum0.2391.19e-251.34e-24
speciesEubacterium_rectale0.2322.61e-242.86e-23
speciesAnaerostipes_hadrus0.2181.59e-211.71e-20
genusHoldemania0.2113.49e-203.66e-19
phylumFusobacteria-0.2071.66e-191.63e-18
classFusobacteriia-0.2071.66e-191.63e-18
orderFusobacteriales-0.2071.66e-191.63e-18
familyFusobacteriaceae-0.2044.24e-194.08e-18
genusFaecalibacterium0.2046.05e-195.6e-18
speciesFaecalibacterium_prausnitzii0.2046.05e-195.6e-18
genusFusobacterium-0.2038.88e-198.06e-18
classBetaproteobacteria-0.1993.78e-183.37e-17
familySutterellaceae-0.1993.88e-183.39e-17
familyLachnospiraceae0.1933.37e-172.89e-16
speciesDorea_unclassified-0.1933.43e-172.89e-16
speciesRoseburia_hominis0.1934.29e-173.55e-16
orderBurkholderiales-0.1926.07e-174.94e-16
speciesBifidobacterium_adolescentis0.1882.35e-161.88e-15
speciesLachnospiraceae_bacterium_5_1_63FAA0.1882.68e-162.11e-15
speciesRuminococcus_torques0.1873.24e-162.51e-15
familyPorphyromonadaceae-0.1857.19e-165.47e-15
speciesRuminococcus_callidus0.1822.17e-151.63e-14
phylumVerrucomicrobia0.184.12e-152.82e-14
classVerrucomicrobiae0.184.12e-152.82e-14
orderVerrucomicrobiales0.184.12e-152.82e-14
familyVerrucomicrobiaceae0.184.12e-152.82e-14
genusAkkermansia0.184.12e-152.82e-14
speciesAkkermansia_muciniphila0.184.12e-152.82e-14
genusEscherichia0.1796.59e-154.44e-14
speciesRuminococcus_gnavus-0.1761.66e-141.1e-13
orderEnterobacteriales0.1752.7e-141.75e-13
familyEnterobacteriaceae0.1752.7e-141.75e-13
speciesAnaerostipes_unclassified-0.1743.33e-142.12e-13
speciesHoldemania_filiformis0.1726.55e-144.12e-13
speciesEscherichia_coli0.1727.14e-144.43e-13
speciesBacteroides_thetaiotaomicron-0.1621.68e-121.03e-11
speciesLachnospiraceae_bacterium_6_1_63FAA-0.1594.54e-122.75e-11
speciesRuminococcus_lactaris0.1577.72e-124.61e-11
familyActinomycetaceae0.1578.93e-125.25e-11
genusPeptostreptococcaceae_noname0.1579.01e-125.25e-11
speciesFusobacterium_varium-0.1579.21e-125.3e-11
speciesEggerthella_lenta0.1579.98e-125.68e-11
familyBacteroidales_noname0.1561.13e-116.2e-11
genusBacteroidales_noname0.1561.13e-116.2e-11
speciesBacteroidales_bacterium_ph80.1561.13e-116.2e-11
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1542.17e-111.18e-10
genusActinomyces0.1532.55e-111.37e-10
speciesClostridium_nexile-0.1523.45e-111.83e-10
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1524.26e-112.23e-10
speciesBacteroides_vulgatus-0.1514.77e-112.47e-10
speciesEscherichia_unclassified0.1515.14e-112.64e-10
orderLactobacillales0.1515.39e-112.74e-10
familyPeptostreptococcaceae0.1515.51e-112.77e-10
genusPrevotella-0.156.45e-113.2e-10
speciesPrevotella_stercorea-0.156.6e-113.25e-10
classBacilli0.157.28e-113.54e-10
familyLeuconostocaceae0.157.34e-113.54e-10
genusBlautia0.1481.46e-106.96e-10
orderPasteurellales-0.1471.82e-108.51e-10
familyPasteurellaceae-0.1471.82e-108.51e-10
familyPrevotellaceae-0.1471.87e-108.65e-10
speciesPrevotella_copri-0.1462.11e-109.67e-10
speciesHaemophilus_parainfluenzae-0.1462.13e-109.67e-10
speciesLachnospiraceae_bacterium_3_1_46FAA0.1462.21e-109.93e-10
speciesClostridium_bartlettii0.1462.23e-109.93e-10
speciesStreptococcus_thermophilus0.1462.42e-101.06e-09
speciesParabacteroides_unclassified-0.1462.43e-101.06e-09
speciesEubacterium_siraeum0.1452.64e-101.14e-09
genusHaemophilus-0.1452.89e-101.24e-09
speciesFusobacterium_mortiferum-0.1453.36e-101.43e-09
speciesClostridium_clostridioforme-0.1444.03e-101.7e-09
genusAnaerostipes0.1427.15e-102.98e-09
speciesBacteroides_xylanisolvens-0.1427.19e-102.98e-09
speciesCoprococcus_sp_ART55_10.1427.86e-103.21e-09
speciesClostridiales_bacterium_1_7_47FAA-0.1427.89e-103.21e-09
speciesFusobacterium_ulcerans-0.1418.46e-103.41e-09
speciesBacteroides_ovatus-0.1419.49e-103.8e-09
orderActinomycetales0.1391.58e-096.27e-09
genusSutterellaceae_unclassified-0.1337.99e-093.14e-08
genusDialister0.131.66e-086.48e-08
speciesClostridium_ramosum-0.131.78e-086.89e-08
speciesCoprobacillus_unclassified-0.1292.03e-087.79e-08
genusClostridiales_noname-0.1292.33e-088.87e-08
speciesTuricibacter_sanguinis0.1282.8e-081.06e-07
speciesRuminococcus_sp_JC3040.1273.39e-081.27e-07
genusEnterococcus0.1273.42e-081.27e-07
speciesBlautia_producta-0.1273.54e-081.31e-07
genusLachnospiraceae_noname0.1264.27e-081.56e-07
familyEnterococcaceae0.1264.57e-081.66e-07
genusEggerthella0.1255.41e-081.95e-07
classMethanobacteria0.1256.42e-082.26e-07
orderMethanobacteriales0.1256.42e-082.26e-07
familyMethanobacteriaceae0.1256.42e-082.26e-07
speciesBacteroides_stercoris-0.1256.61e-082.31e-07
genusSolobacterium0.1246.78e-082.34e-07
speciesSolobacterium_moorei0.1246.78e-082.34e-07
genusMethanobrevibacter0.1238.47e-082.9e-07
familyStreptococcaceae0.1211.43e-074.86e-07
speciesMethanobrevibacter_smithii0.1211.46e-074.92e-07
speciesCampylobacter_concisus-0.1211.57e-075.26e-07
genusAggregatibacter-0.121.81e-075.97e-07
genusTuricibacter0.121.81e-075.97e-07
speciesKlebsiella_oxytoca0.121.87e-076.13e-07
genusLactococcus0.1192.36e-077.68e-07
speciesLachnospiraceae_bacterium_1_1_57FAA0.1192.55e-078.24e-07
familyLactobacillaceae0.1183e-079.63e-07
speciesLactobacillus_sanfranciscensis0.1183.22e-071.03e-06
phylumEuryarchaeota0.1173.99e-071.26e-06
speciesAnaerotruncus_unclassified0.1174.05e-071.27e-06
classGammaproteobacteria0.1174.06e-071.27e-06
speciesParabacteroides_distasonis-0.1164.52e-071.4e-06
speciesEggerthella_unclassified0.1164.95e-071.52e-06
genusStreptococcus0.1164.97e-071.52e-06
genusLeuconostoc0.1156.24e-071.9e-06
genusLactobacillus0.1156.75e-072.04e-06
speciesOlsenella_unclassified0.1147.38e-072.22e-06
genusAnaerotruncus0.1139.99e-072.98e-06
speciesTuricibacter_unclassified0.1131.07e-063.18e-06
genusActinobacillus-0.1111.54e-064.51e-06
speciesActinobacillus_unclassified-0.1111.54e-064.51e-06
speciesHoldemania_unclassified0.1092.23e-066.5e-06
speciesPrevotella_buccae-0.1082.72e-067.88e-06
speciesMegasphaera_micronuciformis-0.1073.43e-069.87e-06
speciesStreptococcus_salivarius0.1073.46e-069.9e-06
speciesBifidobacterium_catenulatum0.1064.34e-061.23e-05
speciesPropionibacterium_freudenreichii0.1064.48e-061.27e-05
genusCoprobacillus-0.1064.68e-061.31e-05
speciesErysipelotrichaceae_bacterium_6_1_450.1046.61e-061.85e-05
speciesEnterococcus_faecium0.1047.19e-062e-05
speciesAlistipes_onderdonkii0.1037.88e-062.18e-05
speciesVeillonella_dispar-0.1038.12e-062.23e-05
speciesBacteroides_plebeius-0.1038.34e-062.28e-05
genusButyricimonas-0.1029.21e-062.48e-05
speciesButyricimonas_synergistica-0.1029.21e-062.48e-05
familyBacillales_noname0.1029.86e-062.63e-05
genusGemella0.1029.86e-062.63e-05
genusPantoea0.1011.16e-053.06e-05
speciesPantoea_unclassified0.1011.16e-053.06e-05
genusOlsenella0.1011.33e-053.49e-05
speciesDialister_invisus0.1011.34e-053.49e-05
orderBacillales0.11.61e-054.18e-05
speciesVeillonella_atypica-0.0991.85e-054.77e-05
speciesRoseburia_intestinalis0.0991.88e-054.82e-05
speciesClostridium_bolteae-0.0991.89e-054.82e-05
speciesLactobacillus_plantarum0.0982.33e-055.91e-05
speciesAggregatibacter_segnis-0.0972.48e-056.26e-05
speciesWeissella_confusa0.0972.86e-057.18e-05
genusBarnesiella0.0963.04e-057.55e-05
speciesBarnesiella_intestinihominis0.0963.04e-057.55e-05
speciesLactobacillus_rhamnosus0.0963.23e-057.98e-05
speciesBifidobacterium_bifidum0.0963.31e-058.14e-05
speciesAlistipes_sp_AP110.0963.35e-058.19e-05
classErysipelotrichia0.0953.99e-059.61e-05
orderErysipelotrichales0.0953.99e-059.61e-05
familyErysipelotrichaceae0.0953.99e-059.61e-05
speciesLactococcus_garvieae0.0935.49e-050.000132
speciesLactococcus_lactis0.0935.56e-050.000133
genusWeissella0.0926.44e-050.000153
speciesStreptococcus_parasanguinis0.0927e-050.000165
genusPseudoflavonifractor0.099.72e-050.000227
speciesPseudoflavonifractor_capillosus0.099.72e-050.000227
genusPropionibacterium0.0890.0001090.000253
familyClostridiales_noname-0.0890.0001160.000268
speciesStreptococcus_australis0.0880.0001280.000295
speciesBacteroides_faecis-0.0880.0001290.000296
speciesMethanobrevibacter_unclassified0.0870.0001640.000374
speciesPorphyromonas_asaccharolytica0.0870.0001730.000393
speciesAlistipes_finegoldii0.0870.0001790.000404
speciesClostridium_sp_KLE_1755-0.0860.0001850.000416
genusPorphyromonas0.0860.0001890.000421
genusSutterella-0.0860.0001890.000421
speciesParabacteroides_goldsteinii-0.0850.0002530.000561
speciesClostridium_symbiosum-0.0830.0003060.000675
speciesHaemophilus_paraphrohaemolyticus-0.0830.0003270.000718
genusFlavonifractor-0.0820.0003770.00082
speciesFlavonifractor_plautii-0.0820.0003770.00082
speciesStreptococcus_sanguinis0.0820.000390.000844
speciesAnaerotruncus_colihominis0.0820.0004080.000879
speciesEubacterium_dolichum-0.0820.0004170.000895
speciesSutterella_wadsworthensis-0.0810.0004370.000933
speciesBlautia_hydrogenotrophica0.0810.0004610.00098
familyRikenellaceae0.0810.0004680.000986
genusAlistipes0.0810.0004680.000986
speciesDialister_succinatiphilus0.0810.0004870.00102
speciesCoprococcus_eutactus0.080.0004980.00104
speciesParaprevotella_xylaniphila-0.080.0005490.00114
speciesClostridium_sp_L2_500.0790.0006630.00137
genusButyricicoccus-0.0780.0007280.00149
speciesButyricicoccus_pullicaecorum-0.0780.0007280.00149
speciesEubacterium_cylindroides0.0780.0007330.0015
speciesMegamonas_unclassified-0.0780.0007560.00154
speciesErysipelotrichaceae_bacterium_21_30.0780.0007720.00156
genusMegamonas-0.0770.0007990.00161
speciesEnterococcus_faecalis0.0770.0008060.00162
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0770.0008360.00167
speciesBacteroides_dorei-0.0760.000960.00191
genusMegasphaera-0.0760.0010.00198
genusRothia0.0760.001010.00199
familyMicrococcaceae0.0760.001030.00203
speciesOdoribacter_splanchnicus-0.0750.001110.00217
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0750.001120.00218
speciesOdoribacter_laneus0.0750.001230.00239
speciesLactobacillus_acidophilus0.0740.001320.00255
speciesBacteroides_caccae-0.0740.001450.00279
speciesParabacteroides_merdae-0.0740.001460.0028
genusVeillonella-0.0710.002030.00387
classEpsilonproteobacteria-0.0710.002040.00387
orderCampylobacterales-0.0710.002040.00387
speciesEnterobacter_cloacae0.0710.002060.00389
speciesEubacterium_biforme0.0710.002150.00404
speciesRoseburia_inulinivorans0.0710.002220.00416
speciesHaemophilus_sputorum-0.070.002350.00438
speciesKlebsiella_unclassified0.070.002530.0047
speciesBacteroides_coprocola-0.070.002610.00483
speciesVeillonella_unclassified-0.0690.002920.00538
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0680.003160.0058
speciesLactococcus_phage_P6800.0680.003460.00633
speciesLactobacillus_casei_paracasei0.0670.003650.00665
genusEnterobacter0.0670.003780.00686
genusCampylobacter-0.0660.004150.0075
speciesAlistipes_indistinctus0.0650.004660.00838
familyCampylobacteraceae-0.0650.004670.00838
speciesCollinsella_intestinalis-0.0650.00470.0084
genusRoseburia0.0650.004930.00878
speciesBacteroides_uniformis-0.0650.00510.00905
speciesAlistipes_putredinis0.0640.005930.0105
speciesMegamonas_rupellensis-0.0630.006090.0107
speciesAlistipes_senegalensis0.0630.006460.0113
speciesBacteroides_salyersiae-0.0630.00650.0114
speciesC2likevirus_unclassified-0.0630.006570.0114
speciesPorphyromonas_uenonis0.0620.007450.0129
speciesBacteroides_massiliensis-0.0610.008010.0138
speciesPeptostreptococcaceae_noname_unclassified0.0610.008150.014
genusParaprevotella-0.0610.008190.0141
speciesSubdoligranulum_sp_4_3_54A2FAA0.0610.008350.0143
genusAcidaminococcaceae_unclassified-0.0610.00880.015
speciesOscillibacter_sp_KLE_1728-0.060.009310.0158
speciesRothia_mucilaginosa0.060.009520.0161
genusOdoribacter-0.060.009860.0166
genusC2likevirus-0.0590.01020.0171
speciesBacteroides_eggerthii-0.0580.01170.0196
speciesParaprevotella_unclassified-0.0580.01180.0197
genusCitrobacter0.0580.01260.0209
speciesCollinsella_unclassified-0.0560.01590.0263
speciesEubacterium_eligens0.0560.01620.0267
speciesBifidobacterium_pseudocatenulatum0.0550.01760.0289
speciesParabacteroides_johnsonii-0.0550.01790.0293
speciesBacteroides_fragilis-0.0550.01830.0299
classNegativicutes-0.0540.01850.03
orderSelenomonadales-0.0540.01850.03
genusRuminococcaceae_noname0.0530.02130.0343
speciesRuminococcaceae_bacterium_D160.0530.02130.0343
genusPyramidobacter0.0520.0240.0384
speciesPyramidobacter_piscolens0.0520.0240.0384
speciesParaprevotella_clara-0.0520.02490.0397
speciesBacteroides_finegoldii-0.0520.02520.04
phylumProteobacteria0.0510.0260.0412
speciesBifidobacterium_animalis0.0510.02620.0414
genusSiphoviridae_noname0.0510.02740.0431
speciesKlebsiella_sp_MS_92_30.0510.02770.0434
familyPropionibacteriaceae0.0510.02830.0441
speciesClostridium_hathewayi-0.0510.02830.0441
speciesRoseburia_unclassified-0.050.03010.0467
speciesBacteroides_nordii-0.0490.03250.0501
speciesStreptococcus_pasteurianus-0.0490.03270.0501
speciesFusobacterium_nucleatum-0.0490.03270.0501
speciesLactobacillus_delbrueckii0.0490.03270.0501
speciesCitrobacter_unclassified0.0490.03390.0518
speciesClostridium_citroniae-0.0490.03420.0521
speciesCitrobacter_freundii0.0480.03760.0571
phylumSynergistetes0.0470.04020.0602
classSynergistia0.0470.04020.0602
orderSynergistales0.0470.04020.0602
familySynergistaceae0.0470.04020.0602
speciesBifidobacterium_dentium0.0470.04090.0611
genusErysipelotrichaceae_noname0.0470.04290.0639
speciesWeissella_cibaria0.0470.04340.0644
familyClostridiales_Family_XI_Incertae_Sedis0.0460.04450.0658
speciesErysipelotrichaceae_bacterium_3_1_53-0.0460.04570.0674
genusOxalobacter0.0460.04620.0677
speciesOxalobacter_formigenes0.0460.04620.0677
speciesLactococcus_phage_jm20.0450.05060.0739
speciesStreptococcus_anginosus0.0440.05530.0805
familyOxalobacteraceae0.0440.05540.0805
speciesVeillonella_parvula-0.0440.05790.0838
speciesLactococcus_phage_phi70.0440.05840.0842
genusKlebsiella0.0440.05850.0842
speciesPeptostreptococcus_anaerobius0.0430.06010.0862
genusMethanosphaera0.0430.06430.0916
speciesMethanosphaera_stadtmanae0.0430.06430.0916
speciesCoprobacillus_sp_D60.0430.06440.0916
speciesClostridium_spiroforme0.0420.06990.0991
speciesOdoribacter_unclassified-0.0420.07030.0993
genusClostridium-0.0420.07210.101
speciesMegamonas_hypermegale-0.0420.07220.101
familyClostridiaceae-0.0410.07350.103
speciesAlistipes_shahii0.040.08280.116
speciesOscillibacter_sp_KLE_1745-0.040.08410.117
speciesClostridium_sp_ATCC_BAA_442-0.040.08490.118
speciesBacteroides_coprophilus-0.040.08550.118
familyAcidaminococcaceae-0.0390.09080.125
speciesStreptococcus_lutetiensis-0.0390.09380.129
speciesLeuconostoc_lactis0.0380.09830.135
speciesLactobacillus_salivarius-0.0380.10.137
speciesAcidaminococcus_unclassified-0.0380.1010.138
speciesBacteroides_fluxus-0.0380.1020.138
speciesStreptococcus_gordonii0.0380.1020.138
speciesLactobacillus_reuteri0.0380.1020.138
speciesBacteroides_clarus-0.0380.1030.139
speciesGemella_morbillorum0.0360.1180.159
genusAcidaminococcus-0.0350.1270.17
genusClostridiaceae_noname-0.0350.130.173
speciesClostridiaceae_bacterium_JC118-0.0350.130.173
phylumViruses_noname0.0350.1310.173
classViruses_noname0.0350.1310.173
speciesAlistipes_unclassified-0.0350.1310.173
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0340.140.185
speciesEggerthella_sp_1_3_56FAA0.0340.1410.185
genusCoprobacter0.0330.1480.194
speciesCoprobacter_fastidiosus0.0330.1480.194
speciesBacteroides_sp_3_1_190.0330.1540.201
speciesMegasphaera_unclassified-0.0330.1560.203
speciesStreptococcus_vestibularis0.0320.1620.21
speciesEubacterium_sp_3_1_31-0.0320.1710.221
speciesPeptostreptococcus_stomatis-0.0320.1730.223
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0310.1750.225
speciesBacteroides_sp_1_1_6-0.0310.1830.235
speciesPrevotella_bivia0.0310.1870.239
speciesEnterobacteria_phage_HK5440.030.1910.244
speciesBacteroides_sp_2_1_22-0.030.1950.248
speciesBilophila_wadsworthia0.030.1960.249
speciesLactobacillus_vaginalis-0.0290.210.266
speciesLactobacillus_oris-0.0280.220.278
familyStaphylococcaceae0.0270.2370.298
speciesLactobacillus_mucosae-0.0260.2550.32
speciesCoprobacillus_sp_29_10.0260.260.326
genusStaphylococcus0.0260.2670.333
speciesProteus_mirabilis-0.0250.2710.336
classDeltaproteobacteria0.0250.2720.336
orderDesulfovibrionales0.0250.2720.336
familyDesulfovibrionaceae0.0250.2720.336
genusPeptostreptococcus-0.0240.2940.362
speciesBifidobacterium_breve-0.0240.3010.37
speciesOscillibacter_unclassified0.0240.3080.378
familyVeillonellaceae-0.0230.3130.381
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0230.3130.381
speciesLachnospiraceae_bacterium_7_1_58FAA0.0230.3130.381
speciesBacteroides_pectinophilus0.0230.320.388
genusCoriobacteriaceae_noname0.0230.3240.392
speciesCoriobacteriaceae_bacterium_phI0.0230.330.398
speciesBacteroides_barnesiae-0.0220.3310.399
speciesMegamonas_funiformis-0.0220.3320.399
speciesLactobacillus_gasseri0.0210.3590.43
speciesAcidaminococcus_intestini-0.0210.3620.433
genusParasutterella-0.0210.3660.435
speciesParasutterella_excrementihominis-0.0210.3660.435
speciesLactobacillus_amylovorus0.020.3810.452
speciesLachnospiraceae_bacterium_1_4_56FAA-0.020.3820.452
genusPhascolarctobacterium-0.0190.4040.476
speciesPhascolarctobacterium_succinatutens-0.0190.4040.476
speciesMegasphaera_elsdenii0.0180.4370.513
speciesStreptococcus_mutans0.0180.4410.517
familyOscillospiraceae0.0170.4570.533
genusOscillibacter0.0170.4570.533
genusParvimonas0.0170.4740.55
speciesLactococcus_phage_bIL67-0.0170.4740.55
speciesStreptococcus_mitis_oralis_pneumoniae0.0170.4750.55
speciesSlackia_piriformis0.0160.4790.551
genusSlackia0.0160.480.551
speciesParvimonas_unclassified0.0160.480.551
speciesBacteroides_oleiciplenus-0.0160.50.573
speciesClostridium_asparagiforme-0.0140.5370.612
speciesBacteroides_intestinalis0.0140.5370.612
speciesSutterella_parvirubra-0.0140.5380.612
orderViruses_noname0.0140.5580.633
speciesStreptococcus_phage_Sfi21-0.0130.5630.637
genusBilophila0.0130.5640.637
genusPeptoniphilus0.0130.5710.643
familyMyoviridae-0.0130.5880.661
genusCatenibacterium-0.0120.5930.663
speciesCatenibacterium_mitsuokai-0.0120.5930.663
genusProteus-0.0120.6110.681
speciesEnterobacter_aerogenes0.0120.6130.681
speciesBifidobacterium_angulatum0.0120.6130.681
speciesBilophila_unclassified0.0110.630.698
orderAeromonadales0.0110.6360.701
genusLambdalikevirus0.0110.6360.701
speciesAlistipes_sp_HGB5-0.0110.6410.705
speciesBacteroides_salanitronis0.0110.6420.705
speciesButyrivibrio_crossotus-0.010.6530.715
genusDesulfovibrio0.010.660.721
genusMitsuokella0.010.6670.727
genusMyoviridae_noname-0.010.6710.73
speciesDesulfovibrio_piger-0.010.6790.737
speciesButyrivibrio_unclassified0.0090.6830.739
speciesBacteroides_sp_4_3_47FAA0.0090.6870.742
speciesKlebsiella_phage_KP36-0.0090.7030.758
familySuccinivibrionaceae0.0090.7090.762
speciesRuminococcus_champanellensis-0.0080.7430.797
speciesClostridium_perfringens-0.0070.7760.83
genusBurkholderiales_noname-0.0060.7790.83
speciesBurkholderiales_bacterium_1_1_47-0.0060.7790.83
speciesLactobacillus_crispatus0.0060.7830.832
speciesDesulfovibrio_desulfuricans-0.0060.7870.835
familyBurkholderiales_noname-0.0060.7940.84
speciesLactobacillus_fermentum-0.0060.7970.842
speciesKlebsiella_pneumoniae0.0060.8050.848
genusTunalikevirus-0.0060.810.851
speciesMitsuokella_unclassified0.0050.8140.854
speciesBacteroides_cellulosilyticus0.0050.8190.857
speciesLactococcus_phage_936_sensu_lato-0.0050.8290.866
speciesHoldemania_sp_AP20.0050.8320.867
speciesCollinsella_tanakaei0.0050.8420.875
orderPseudomonadales0.0040.8550.887
familyPodoviridae0.0040.8680.896
genusSuccinatimonas0.0040.8690.896
speciesSuccinatimonas_hippei0.0040.8690.896
orderCaudovirales-0.0030.8860.91
genusMorganella-0.0030.8890.91
speciesMorganella_morganii-0.0030.8890.91
speciesAcidaminococcus_fermentans-0.0030.8910.91
speciesLactobacillus_ruminis0.0030.9040.922
speciesParabacteroides_sp_D130.0020.9240.94
genusButyrivibrio0.0020.9340.947
familySiphoviridae0.0020.9350.947
speciesEubacterium_limosum-0.0010.9570.967
speciesStreptococcus_infantarius0.0010.9610.969
familyViruses_noname-0.0010.9780.982
genusViruses_noname-0.0010.9780.982
speciesMitsuokella_multacida-0.0010.980.982
speciesParabacteroides_sp_20_30.00.9890.989
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01415258225710.01164205749920.00218982305599844128.355
Type II diabetesSweden53920.03153188958940.04075579812410.055244789204319856.72198
Type II diabetesDenmark752770.01802832372660.01533009357240.0823293876919889629.1605
Crohns diseaseSpain17660.01625633958440.01407714460580.1078468152811400946.5802
Ulcerative colitisSpain78660.0100409303780.01407714460580.146406270853894829.5177
Colorectal cancerAustria64350.05660632544950.06685236420160.163221830367727924.6278
Rheumatoid arthritisChina127980.04275637278050.03560263907440.4116295982671508850.3151
Type II diabetesChina1831850.02409564280930.02460588158810.4150037909091919863.4456
ObesityDenmark1691230.0149324529140.02041525229010.6415659933782259174.2856
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382