MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-14 09:54:11 PST
Job id & description: 2189, uricase
Query type: protein
Count queries & homologs: 1, 9
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
uricase2665024CompleteK01452COG0726ProteobacteriaKlebsiella100.090.098.92
uricase2689735Lack 3'-endK01452COG0726ProteobacteriaEnterobacter99.2889.3593.14
uricase2674478CompleteK01452COG0726ProteobacteriaEnterobacter99.6489.6891.73
uricase2676729CompleteK01452COG0726ProteobacteriaKlebsiella100.090.091.04
uricase2676737CompleteK01452COG0726ProteobacteriaEnterobacter99.6489.6890.65
uricase2674631CompleteK01452COG0726ProteobacteriaEnterobacter99.6489.6890.65
uricase2646293CompleteK01452COG0726ProteobacteriaEnterobacter99.6489.190.65
uricase4047756Lack 5'-endK01452COG0726ProteobacteriaKlebsiella82.44100.090.87
uricase2543659CompleteK01463COG0726ProteobacteriaAlicycliphilus98.9288.7161.84
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusKlebsiella0.8240.00.0
speciesKlebsiella_pneumoniae0.7960.00.0
genusEnterobacter0.5835.2e-1718.18e-169
orderEnterobacteriales0.5752.51e-1652.37e-163
familyEnterobacteriaceae0.5752.51e-1652.37e-163
speciesEnterobacter_cloacae0.5731.26e-1639.91e-162
classGammaproteobacteria0.5726.87e-1634.63e-161
phylumProteobacteria0.4681.34e-1027.91e-101
genusEscherichia0.4259.93e-835.21e-81
speciesEscherichia_coli0.3971.29e-716.09e-70
genusCitrobacter0.3962.11e-719.05e-70
speciesCitrobacter_unclassified0.3921.04e-694.09e-68
speciesCitrobacter_freundii0.3891.77e-686.43e-67
speciesKlebsiella_oxytoca0.3827.09e-662.39e-64
speciesKlebsiella_unclassified0.3565.25e-571.65e-55
genusSubdoligranulum-0.3481.9e-545.61e-53
speciesSubdoligranulum_unclassified-0.3476.15e-541.71e-52
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3231.26e-463.3e-45
phylumFusobacteria0.3169.29e-452.09e-43
classFusobacteriia0.3169.29e-452.09e-43
orderFusobacteriales0.3169.29e-452.09e-43
speciesEscherichia_unclassified0.3143.38e-447.25e-43
familyFusobacteriaceae0.3145.43e-441.11e-42
genusFusobacterium0.3137.39e-441.45e-42
speciesEubacterium_siraeum-0.2955.41e-391.02e-37
genusWeissella0.2884.38e-377.95e-36
speciesWeissella_confusa0.2844.19e-367.32e-35
genusPseudoflavonifractor-0.2813.01e-354.82e-34
speciesPseudoflavonifractor_capillosus-0.2813.01e-354.82e-34
genusPantoea0.2813.2e-354.82e-34
speciesPantoea_unclassified0.2813.2e-354.82e-34
genusVeillonella0.2813.27e-354.82e-34
speciesVeillonella_parvula0.2798.42e-351.2e-33
speciesHaemophilus_parainfluenzae0.2766.35e-348.82e-33
genusHaemophilus0.2731.97e-332.66e-32
orderPasteurellales0.2724.32e-335.51e-32
familyPasteurellaceae0.2724.32e-335.51e-32
speciesAnaerotruncus_unclassified-0.2717.96e-339.89e-32
speciesMegamonas_unclassified0.2661e-311.21e-30
genusMegamonas0.2651.69e-311.99e-30
speciesClostridium_perfringens0.2635.25e-316.04e-30
speciesEnterobacter_aerogenes0.2594.32e-304.85e-29
speciesClostridium_leptum-0.2586.8e-307.46e-29
speciesVeillonella_unclassified0.254.48e-284.81e-27
speciesBacteroides_plebeius0.2496.39e-286.7e-27
speciesFusobacterium_mortiferum0.2456.45e-276.62e-26
genusPrevotella0.2449.78e-279.82e-26
speciesClostridium_nexile0.2431.7e-261.67e-25
speciesLactobacillus_salivarius0.2422.65e-262.55e-25
speciesLactococcus_garvieae0.2391.15e-251.09e-24
familyRuminococcaceae-0.2391.27e-251.18e-24
speciesRuminococcus_gnavus0.2372.38e-252.16e-24
genusButyrivibrio-0.2364.99e-254.44e-24
speciesWeissella_cibaria0.2358.23e-257.19e-24
genusAnaerotruncus-0.2322.84e-242.44e-23
speciesMegasphaera_micronuciformis0.238.14e-246.86e-23
genusDorea-0.2291.17e-239.69e-23
speciesBifidobacterium_adolescentis-0.2264.15e-233.38e-22
speciesPrevotella_copri0.2256.69e-235.35e-22
genusCoprococcus-0.2214.71e-223.71e-21
speciesDorea_longicatena-0.225.67e-224.39e-21
phylumVerrucomicrobia-0.2198.21e-225.78e-21
classVerrucomicrobiae-0.2198.21e-225.78e-21
orderVerrucomicrobiales-0.2198.21e-225.78e-21
familyVerrucomicrobiaceae-0.2198.21e-225.78e-21
genusAkkermansia-0.2198.21e-225.78e-21
speciesAkkermansia_muciniphila-0.2198.21e-225.78e-21
speciesEubacterium_hallii-0.2199.4e-226.52e-21
speciesVeillonella_atypica0.2131.22e-208.35e-20
speciesPrevotella_stercorea0.2131.45e-209.78e-20
familyOscillospiraceae-0.2121.72e-201.13e-19
genusOscillibacter-0.2121.72e-201.13e-19
speciesFusobacterium_nucleatum0.2121.79e-201.16e-19
speciesVeillonella_dispar0.2122.01e-201.28e-19
speciesBacteroides_stercoris0.214.19e-202.64e-19
classClostridia-0.2095.66e-203.47e-19
orderClostridiales-0.2095.66e-203.47e-19
speciesPrevotella_buccae0.2098.16e-204.94e-19
genusRuminococcaceae_noname-0.2071.52e-198.97e-19
speciesRuminococcaceae_bacterium_D16-0.2071.52e-198.97e-19
familyLeuconostocaceae0.2061.89e-191.1e-18
speciesCoprococcus_comes-0.2062.29e-191.32e-18
speciesEubacterium_ramulus-0.2052.89e-191.64e-18
speciesStreptococcus_anginosus0.2053.37e-191.89e-18
speciesC2likevirus_unclassified-0.2036.42e-193.56e-18
genusMegasphaera0.2021.15e-186.31e-18
speciesButyrivibrio_unclassified-0.2012.04e-181.11e-17
genusC2likevirus-0.1985.3e-182.84e-17
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1961.17e-176.2e-17
orderCoriobacteriales-0.1933.53e-171.83e-16
familyCoriobacteriaceae-0.1933.53e-171.83e-16
speciesOscillibacter_unclassified-0.1934.37e-172.24e-16
classBacilli0.191.19e-166.04e-16
genusCollinsella-0.1891.98e-169.94e-16
speciesCollinsella_aerofaciens-0.1882.25e-161.12e-15
orderLactobacillales0.1882.49e-161.22e-15
genusBarnesiella-0.1873.39e-161.63e-15
speciesBarnesiella_intestinihominis-0.1873.39e-161.63e-15
speciesAnaerostipes_hadrus-0.1858.46e-164.03e-15
speciesErysipelotrichaceae_bacterium_21_3-0.183.76e-151.76e-14
speciesStreptococcus_salivarius0.183.76e-151.76e-14
speciesKlebsiella_sp_MS_92_30.1781.01e-144.67e-14
speciesMitsuokella_unclassified-0.1781.05e-144.81e-14
speciesStreptococcus_thermophilus-0.1771.29e-145.85e-14
speciesBacteroides_intestinalis0.1761.56e-147.01e-14
genusPyramidobacter0.1752.41e-141.06e-13
speciesPyramidobacter_piscolens0.1752.41e-141.06e-13
speciesStreptococcus_mitis_oralis_pneumoniae0.1752.43e-141.06e-13
speciesMegamonas_funiformis0.1743.13e-141.36e-13
speciesFusobacterium_ulcerans0.1734.48e-141.92e-13
speciesLeuconostoc_lactis0.1735.69e-142.42e-13
speciesLactobacillus_mucosae0.1726.19e-142.61e-13
phylumSynergistetes0.1726.84e-142.78e-13
classSynergistia0.1726.84e-142.78e-13
orderSynergistales0.1726.84e-142.78e-13
familySynergistaceae0.1726.84e-142.78e-13
speciesBacteroides_uniformis-0.1719.29e-143.75e-13
genusAggregatibacter0.1711.12e-134.48e-13
phylumFirmicutes-0.1682.5e-139.92e-13
speciesCoprococcus_catus-0.1683.05e-131.2e-12
speciesBlautia_hydrogenotrophica-0.1673.62e-131.41e-12
speciesStreptococcus_infantarius0.1673.75e-131.45e-12
familyMyoviridae0.1664.57e-131.75e-12
speciesBifidobacterium_pseudocatenulatum0.1664.75e-131.81e-12
genusCampylobacter0.1664.87e-131.84e-12
speciesMethanobrevibacter_smithii-0.1665.26e-131.97e-12
speciesRuminococcus_sp_5_1_39BFAA-0.1665.35e-131.99e-12
genusMitsuokella-0.1665.55e-132.05e-12
familyEnterococcaceae0.1657.44e-132.72e-12
genusEnterococcus0.1641.05e-123.81e-12
speciesMegamonas_hypermegale0.1631.17e-124.22e-12
familyCampylobacteraceae0.1631.52e-125.44e-12
speciesMegamonas_rupellensis0.1621.77e-126.28e-12
classEpsilonproteobacteria0.1621.92e-126.71e-12
orderCampylobacterales0.1621.92e-126.71e-12
genusMethanobrevibacter-0.1612.82e-129.79e-12
classMethanobacteria-0.163.22e-121.09e-11
orderMethanobacteriales-0.163.22e-121.09e-11
familyMethanobacteriaceae-0.163.22e-121.09e-11
speciesCampylobacter_concisus0.163.77e-121.27e-11
speciesBifidobacterium_dentium0.163.92e-121.31e-11
phylumEuryarchaeota-0.1594.18e-121.39e-11
familyBacteroidales_noname-0.1594.96e-121.61e-11
genusBacteroidales_noname-0.1594.96e-121.61e-11
speciesBacteroidales_bacterium_ph8-0.1594.96e-121.61e-11
speciesAggregatibacter_segnis0.1579.58e-123.1e-11
familySiphoviridae-0.1561.1e-113.53e-11
familyStreptococcaceae0.1551.59e-115.07e-11
familyPrevotellaceae0.1542.4e-117.6e-11
speciesDorea_formicigenerans-0.1532.72e-118.56e-11
genusCoprobacter-0.1532.8e-118.69e-11
speciesCoprobacter_fastidiosus-0.1532.8e-118.69e-11
genusRuminococcus-0.1523.89e-111.2e-10
genusAnaerostipes-0.1481.32e-104.05e-10
speciesBacteroides_fragilis0.1471.62e-104.93e-10
speciesEubacterium_rectale-0.1462.05e-106.2e-10
genusEubacterium-0.1452.7e-108.12e-10
familyEubacteriaceae-0.1452.73e-108.16e-10
genusStreptococcus0.1444.04e-101.2e-09
speciesStreptococcus_australis0.1435.14e-101.52e-09
speciesBacteroides_coprocola0.1435.18e-101.52e-09
genusActinobacillus0.1435.31e-101.53e-09
speciesActinobacillus_unclassified0.1435.31e-101.53e-09
speciesBacteroides_xylanisolvens0.1435.32e-101.53e-09
speciesSutterella_wadsworthensis-0.1435.55e-101.59e-09
familyPorphyromonadaceae-0.1426.38e-101.81e-09
genusLactobacillus0.1419.07e-102.56e-09
speciesEnterococcus_faecalis0.1391.54e-094.33e-09
familyBacillales_noname0.1391.79e-094.97e-09
genusGemella0.1391.79e-094.97e-09
familyLactobacillaceae0.1381.91e-095.27e-09
speciesBacteroides_thetaiotaomicron0.1372.5e-096.86e-09
speciesOscillibacter_sp_KLE_1745-0.1372.56e-096.98e-09
speciesCoprobacillus_unclassified0.1363.11e-098.44e-09
phylumActinobacteria-0.1354.2e-091.13e-08
classActinobacteria-0.1354.2e-091.13e-08
genusSutterella-0.1354.37e-091.17e-08
orderBacillales0.1354.5e-091.19e-08
speciesRuminococcus_obeum-0.1354.81e-091.27e-08
genusMorganella0.1345.54e-091.44e-08
speciesMorganella_morganii0.1345.54e-091.44e-08
speciesFusobacterium_varium0.1321.05e-082.72e-08
speciesClostridium_bolteae0.131.8e-084.64e-08
speciesOdoribacter_unclassified-0.131.81e-084.64e-08
familyPeptostreptococcaceae0.1292.27e-085.79e-08
speciesOlsenella_unclassified-0.1282.51e-086.37e-08
speciesBacteroides_finegoldii0.1282.54e-086.41e-08
genusSiphoviridae_noname-0.1282.68e-086.71e-08
genusSolobacterium0.1282.7e-086.71e-08
speciesSolobacterium_moorei0.1282.7e-086.71e-08
familyRikenellaceae-0.1264.94e-081.21e-07
genusAlistipes-0.1264.94e-081.21e-07
genusOdoribacter-0.1255.41e-081.32e-07
speciesClostridium_bartlettii0.1256.34e-081.54e-07
familyVeillonellaceae0.1247.05e-081.71e-07
genusAdlercreutzia-0.1247.73e-081.85e-07
speciesAdlercreutzia_equolifaciens-0.1247.73e-081.85e-07
genusCoprobacillus0.1248.34e-081.99e-07
speciesClostridium_symbiosum0.1221.08e-072.56e-07
speciesEnterobacteria_phage_HK5440.1221.17e-072.76e-07
speciesLactobacillus_fermentum0.1221.31e-073.08e-07
speciesAlistipes_senegalensis-0.1221.34e-073.13e-07
genusProteus0.1211.5e-073.49e-07
genusTunalikevirus0.121.82e-074.21e-07
genusMyoviridae_noname0.121.86e-074.28e-07
genusPeptostreptococcaceae_noname0.1192.22e-075.08e-07
speciesRoseburia_unclassified-0.1192.23e-075.08e-07
speciesRoseburia_hominis-0.1192.62e-075.95e-07
speciesClostridium_ramosum0.1192.65e-075.98e-07
speciesRuminococcus_torques-0.1183.02e-076.79e-07
speciesProteus_mirabilis0.1183.41e-077.63e-07
speciesBacteroides_salyersiae0.1173.65e-078.13e-07
speciesAlistipes_sp_AP11-0.1164.76e-071.05e-06
speciesHaemophilus_sputorum0.1164.83e-071.07e-06
speciesHaemophilus_paraphrohaemolyticus0.1165.02e-071.1e-06
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1165.03e-071.1e-06
speciesButyrivibrio_crossotus-0.1165.08e-071.1e-06
speciesBacteroides_massiliensis0.1155.59e-071.21e-06
speciesClostridium_hathewayi0.1156.79e-071.46e-06
speciesKlebsiella_phage_KP360.1139.04e-071.94e-06
speciesMegasphaera_unclassified0.1131.07e-062.29e-06
speciesOdoribacter_splanchnicus-0.1121.25e-062.66e-06
speciesClostridium_citroniae0.1111.58e-063.34e-06
speciesAlistipes_indistinctus-0.111.8e-063.79e-06
speciesPeptostreptococcus_stomatis0.111.81e-063.8e-06
genusOlsenella-0.1092.38e-064.97e-06
speciesBifidobacterium_longum-0.1082.7e-065.61e-06
speciesCoprococcus_sp_ART55_1-0.1082.81e-065.82e-06
speciesPropionibacterium_freudenreichii-0.1082.88e-065.94e-06
speciesLachnospiraceae_bacterium_6_1_63FAA0.1063.93e-068.07e-06
familyPropionibacteriaceae-0.1064.27e-068.72e-06
speciesAlistipes_onderdonkii-0.1055.18e-061.05e-05
speciesBacteroides_oleiciplenus0.1055.63e-061.14e-05
genusBifidobacterium-0.1046.53e-061.32e-05
speciesClostridiales_bacterium_1_7_47FAA0.1038.21e-061.65e-05
genusPeptostreptococcus0.1029.93e-061.99e-05
orderBifidobacteriales-0.1021.03e-052.04e-05
familyBifidobacteriaceae-0.1021.03e-052.04e-05
speciesRothia_mucilaginosa0.1011.19e-052.35e-05
genusDialister-0.1011.26e-052.48e-05
speciesBacteroides_nordii0.11.34e-052.62e-05
speciesStreptococcus_gordonii0.11.53e-052.98e-05
genusFlavonifractor0.0991.72e-053.33e-05
speciesFlavonifractor_plautii0.0991.72e-053.33e-05
speciesLactobacillus_crispatus0.0991.76e-053.39e-05
speciesStreptococcus_sanguinis0.0991.86e-053.57e-05
speciesLactococcus_phage_P680-0.0991.9e-053.63e-05
speciesBacteroides_sp_3_1_190.0982.03e-053.86e-05
speciesLachnospiraceae_bacterium_2_1_58FAA0.0972.5e-054.74e-05
speciesErysipelotrichaceae_bacterium_6_1_45-0.0972.61e-054.93e-05
speciesEnterococcus_faecium0.0972.75e-055.17e-05
genusClostridium0.0972.81e-055.26e-05
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0962.98e-055.56e-05
speciesAlistipes_unclassified-0.0963.27e-056.08e-05
speciesDialister_invisus-0.0963.52e-056.52e-05
familyClostridiaceae0.0953.9e-057.19e-05
speciesBifidobacterium_animalis-0.0953.97e-057.29e-05
speciesMethanobrevibacter_unclassified-0.0935.22e-059.55e-05
speciesLactobacillus_sanfranciscensis0.0935.39e-059.82e-05
speciesBifidobacterium_catenulatum-0.0935.83e-050.000106
speciesLactobacillus_plantarum0.0917.64e-050.000138
speciesLachnospiraceae_bacterium_8_1_57FAA-0.099.4e-050.000169
speciesCoprococcus_eutactus-0.0890.0001210.000217
speciesLactobacillus_oris0.0890.0001240.000222
speciesEubacterium_cylindroides-0.0890.0001260.000224
speciesStreptococcus_vestibularis0.0880.0001370.000243
genusHoldemania-0.0870.0001590.000281
speciesEggerthella_unclassified0.0870.0001690.000298
speciesAlistipes_sp_HGB5-0.0870.0001770.000311
genusPropionibacterium-0.0860.0001810.000316
familyLachnospiraceae-0.0850.0002540.000442
orderCaudovirales-0.0830.0003160.000548
familyMicrococcaceae0.0830.0003280.000567
genusRothia0.0830.0003520.000606
speciesAlistipes_shahii-0.0820.000360.000618
speciesParabacteroides_goldsteinii0.0820.0003650.000624
speciesHoldemania_filiformis-0.0820.0003730.000636
genusLambdalikevirus0.0820.0003840.000652
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0820.0004040.000683
speciesLachnospiraceae_bacterium_1_1_57FAA0.0810.0004320.000728
genusAcidaminococcaceae_unclassified-0.0810.0004470.000751
speciesEubacterium_ventriosum-0.0790.0006040.00101
speciesDesulfovibrio_desulfuricans-0.0780.0007350.00123
speciesRoseburia_inulinivorans0.0770.0008020.00133
speciesRuminococcus_champanellensis-0.0770.000850.00141
genusEggerthella0.0760.0010.00165
speciesAcidaminococcus_intestini0.0760.001010.00166
speciesMegasphaera_elsdenii0.0760.001030.00169
speciesRuminococcus_lactaris-0.0760.001040.0017
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0750.001140.00186
phylumViruses_noname-0.0750.001250.00202
classViruses_noname-0.0750.001250.00202
genusCatenibacterium-0.0740.001270.00204
speciesCatenibacterium_mitsuokai-0.0740.001270.00204
speciesLactobacillus_vaginalis0.0740.001280.00205
speciesLactococcus_phage_936_sensu_lato-0.0740.001290.00206
speciesDorea_unclassified-0.0740.001430.00227
speciesLactobacillus_gasseri0.0730.001650.00261
speciesRuminococcus_bromii-0.0730.001680.00265
speciesGemella_morbillorum0.0720.001910.00301
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0720.001950.00306
speciesOscillibacter_sp_KLE_1728-0.0720.001960.00306
genusParabacteroides-0.0710.002070.00322
classNegativicutes0.0710.00210.00325
orderSelenomonadales0.0710.00210.00325
speciesParabacteroides_sp_D13-0.0710.002220.00342
speciesRuminococcus_callidus0.070.002430.00374
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0690.002710.00414
speciesAnaerostipes_unclassified0.0690.002710.00414
genusBurkholderiales_noname0.0690.0030.00455
speciesBurkholderiales_bacterium_1_1_470.0690.0030.00455
speciesCollinsella_tanakaei0.0680.003060.00463
speciesBacteroides_coprophilus0.0680.003170.00478
speciesBacteroides_faecis0.0680.003380.00508
familyBurkholderiales_noname0.0680.003460.00518
speciesStreptococcus_pasteurianus0.0670.003610.00539
classBacteroidia0.0670.003770.00559
orderBacteroidales0.0670.003770.00559
phylumBacteroidetes0.0670.003780.00559
genusErysipelotrichaceae_noname-0.0650.004850.00715
genusGordonibacter-0.0640.005390.0079
speciesGordonibacter_pamelaeae-0.0640.005390.0079
genusClostridiales_noname0.0640.005490.00801
speciesClostridium_sp_KLE_1755-0.0640.00550.00801
genusDesulfovibrio-0.0640.005910.00858
speciesBacteroides_pectinophilus-0.0630.006140.00889
genusParasutterella0.0630.006480.00932
speciesParasutterella_excrementihominis0.0630.006480.00932
genusLactococcus0.0610.008670.0124
genusLeuconostoc0.0610.008710.0124
speciesParabacteroides_unclassified-0.0610.008730.0124
speciesBacteroides_eggerthii0.0590.01030.0146
speciesAlistipes_finegoldii-0.0590.01030.0146
familyAcidaminococcaceae-0.0590.01070.0151
speciesBacteroides_sp_1_1_6-0.0590.01110.0156
speciesHoldemania_unclassified-0.0580.01170.0164
speciesBifidobacterium_breve0.0570.01370.0192
speciesLachnospiraceae_bacterium_2_1_46FAA0.0570.01410.0197
speciesClostridium_spiroforme-0.0560.01470.0205
genusClostridiaceae_noname-0.0560.01490.0206
speciesClostridiaceae_bacterium_JC118-0.0560.01490.0206
speciesClostridium_sp_ATCC_BAA_4420.0560.01560.0215
speciesAcidaminococcus_fermentans0.0560.0160.022
classErysipelotrichia-0.0550.01670.0228
orderErysipelotrichales-0.0550.01670.0228
familyErysipelotrichaceae-0.0550.01670.0228
speciesLactobacillus_acidophilus-0.0550.01780.0242
orderActinomycetales0.0540.01870.0254
speciesParaprevotella_xylaniphila-0.0540.01950.0264
speciesAcidaminococcus_unclassified-0.0540.02050.0276
genusPhascolarctobacterium-0.0530.02070.0278
speciesPhascolarctobacterium_succinatutens-0.0530.02070.0278
familyBacteroidaceae0.0530.02110.0281
genusBacteroides0.0530.02110.0281
orderViruses_noname-0.0530.02260.03
familyViruses_noname0.0520.02570.034
genusViruses_noname0.0520.02570.034
speciesOdoribacter_laneus-0.0510.02630.0347
speciesEubacterium_biforme-0.050.02920.0384
speciesStreptococcus_lutetiensis0.050.03160.0414
speciesLactococcus_phage_jm2-0.0490.03250.0425
speciesStreptococcus_parasanguinis0.0490.03440.0449
speciesParabacteroides_johnsonii0.0490.03540.046
speciesLactococcus_phage_phi7-0.0480.03960.0513
familyActinomycetaceae0.0480.03980.0515
speciesLactobacillus_amylovorus0.0470.04110.053
speciesBacteroides_barnesiae-0.0470.04240.0545
speciesBacteroides_dorei-0.0470.0430.0552
speciesEubacterium_eligens0.0460.04450.0569
speciesBilophila_unclassified0.0460.04860.062
familyClostridiales_Family_XI_Incertae_Sedis0.0460.04880.0621
genusParvimonas0.0440.05630.0714
speciesAlistipes_putredinis-0.0440.05650.0715
speciesParvimonas_unclassified0.0440.05670.0716
genusActinomyces0.0440.05710.0719
genusRoseburia0.0440.05860.0736
speciesBacteroides_sp_2_1_22-0.0430.06250.0782
speciesBacteroides_salanitronis-0.0430.06560.0819
genusBilophila0.0420.06850.0853
genusMethanosphaera-0.0420.06970.0863
speciesMethanosphaera_stadtmanae-0.0420.06970.0863
familySuccinivibrionaceae-0.0410.07750.0958
speciesCollinsella_intestinalis0.040.08050.0992
speciesSutterella_parvirubra0.040.08070.0992
speciesClostridium_sp_L2_50-0.040.08680.106
speciesHoldemania_sp_AP20.0390.08810.108
speciesLactobacillus_delbrueckii-0.0390.09150.112
genusSuccinatimonas-0.0380.09610.117
speciesSuccinatimonas_hippei-0.0380.09610.117
speciesPorphyromonas_uenonis0.0380.09640.117
orderAeromonadales0.0380.09960.12
speciesBacteroides_sp_4_3_47FAA0.0380.1020.123
speciesEubacterium_sp_3_1_31-0.0370.1070.129
speciesStreptococcus_mutans0.0370.1140.136
speciesAnaerotruncus_colihominis-0.0370.1140.136
speciesCoriobacteriaceae_bacterium_phI-0.0360.1190.142
genusLachnospiraceae_noname-0.0360.1210.144
speciesBacteroides_caccae0.0350.1290.153
speciesBacteroides_ovatus0.0350.1320.156
speciesEubacterium_dolichum-0.0340.1410.166
genusCoriobacteriaceae_noname-0.0340.1450.171
speciesBacteroides_cellulosilyticus-0.0330.1550.182
speciesDesulfovibrio_piger-0.0320.1640.192
speciesBifidobacterium_angulatum-0.0320.170.199
speciesBilophila_wadsworthia0.0310.1760.205
genusSutterellaceae_unclassified0.030.190.22
speciesParaprevotella_clara-0.030.190.22
genusButyricimonas0.0290.2090.241
speciesButyricimonas_synergistica0.0290.2090.241
familyStaphylococcaceae0.0290.2140.246
speciesParaprevotella_unclassified-0.0270.2430.279
familyPodoviridae0.0260.2570.294
familyOxalobacteraceae-0.0260.2640.302
speciesLactobacillus_casei_paracasei-0.0260.270.308
genusParaprevotella-0.0250.2740.312
speciesBacteroides_clarus0.0250.2890.328
speciesLactobacillus_reuteri0.0240.3050.345
genusOxalobacter-0.0220.3320.374
speciesOxalobacter_formigenes-0.0220.3320.374
genusStaphylococcus0.0220.3510.394
speciesPrevotella_bivia0.020.3850.432
speciesMitsuokella_multacida-0.020.3880.434
classDeltaproteobacteria0.020.3960.439
orderDesulfovibrionales0.020.3960.439
familyDesulfovibrionaceae0.020.3960.439
speciesBlautia_producta0.020.3960.439
speciesCollinsella_unclassified-0.0180.4310.476
speciesSlackia_piriformis-0.0180.4340.479
speciesEggerthella_lenta-0.0180.4460.491
genusTuricibacter-0.0180.4490.493
speciesBifidobacterium_bifidum0.0170.4580.502
speciesParabacteroides_distasonis0.0170.4640.507
speciesBacteroides_fluxus0.0160.4850.527
speciesParabacteroides_sp_20_3-0.0160.4850.527
speciesLactobacillus_rhamnosus0.0160.4920.534
speciesCoprobacillus_sp_29_1-0.0160.5020.543
genusFaecalibacterium-0.0150.5080.547
speciesFaecalibacterium_prausnitzii-0.0150.5080.547
genusSlackia0.0150.510.548
speciesEggerthella_sp_1_3_56FAA0.0150.5190.557
speciesStreptococcus_phage_Sfi21-0.0150.5250.562
speciesBacteroides_vulgatus0.0140.5340.57
genusButyricicoccus-0.0130.5770.613
speciesButyricicoccus_pullicaecorum-0.0130.5770.613
speciesPeptostreptococcaceae_noname_unclassified0.0130.5790.614
familySutterellaceae-0.0120.6090.645
speciesClostridium_asparagiforme0.0120.6110.645
speciesLactococcus_phage_bIL67-0.0110.6190.652
genusBlautia-0.0110.620.652
speciesTuricibacter_unclassified-0.0110.6410.672
speciesRoseburia_intestinalis-0.010.6720.703
genusAcidaminococcus0.0090.6970.728
speciesClostridium_clostridioforme-0.0070.7510.782
speciesParabacteroides_merdae0.0070.7580.788
speciesRuminococcus_sp_JC3040.0060.7930.823
speciesErysipelotrichaceae_bacterium_3_1_53-0.0060.8080.836
speciesTuricibacter_sanguinis0.0050.8450.873
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0040.8750.901
orderBurkholderiales-0.0040.8790.901
speciesCoprobacillus_sp_D6-0.0040.8790.901
speciesLactococcus_lactis-0.0030.8820.901
classBetaproteobacteria0.0030.8830.901
speciesLactobacillus_ruminis-0.0030.8840.901
orderPseudomonadales0.0030.8980.913
speciesLachnospiraceae_bacterium_5_1_57FAA0.0030.9110.925
genusPorphyromonas0.0020.940.952
speciesPorphyromonas_asaccharolytica-0.0010.9630.973
familyClostridiales_noname-0.0010.9710.979
speciesPeptostreptococcus_anaerobius0.00.9870.993
genusPeptoniphilus0.00.9950.997
speciesDialister_succinatiphilus0.00.9960.997
speciesEubacterium_limosum0.00.9970.997
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01299758958440.001462655053090.000605839327686687223.0844
Type II diabetesDenmark752770.0002248481065460.0002406471630320.00741765010746399013.079
Crohns diseaseSpain17660.01039451366730.0001170320458440.02199387973957831.847
ObesityDenmark1691230.000283136302630.001006356809920.16978193839999132.8532
Ulcerative colitisSpain78660.0001031363283650.0001170320458440.1921479233061042234.3802
Rheumatoid arthritisChina127980.006603881509160.004728501906220.4629425336711671855.7508
Type II diabetesChina1831850.003836061868160.003463731234860.5246106642732155371.2284
Type II diabetesSweden53920.000665448114640.0001403877418140.8476855426542545986.214
Colorectal cancerAustria64350.003689123644780.004423899625770.8877422923272686790.902
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382