MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-16 08:53:31 PST
Job id & description: 2192, Dehydroxylases
Query type: protein
Count queries & homologs: 4, 2
Min % identity & max e-value: 95%, 1e-40
Min % query & target coverage: 70%, 70%

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Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
Dadh124853CompleteK08352COG0243ActinobacteriaEggerthella100.0100.0100.0
Ghdh327473CompleteK00183COG0243unknownunknown96.1100.098.78
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusEggerthella0.7840.00.0
speciesEggerthella_unclassified0.7680.00.0
speciesEggerthella_lenta0.6354.72e-2127.43e-210
genusGordonibacter0.5964.72e-1804.46e-178
speciesGordonibacter_pamelaeae0.5964.72e-1804.46e-178
orderCoriobacteriales0.4678.98e-1026.06e-100
familyCoriobacteriaceae0.4678.98e-1026.06e-100
genusBlautia0.3971.41e-718.32e-70
phylumActinobacteria0.3882.41e-681.14e-66
classActinobacteria0.3882.41e-681.14e-66
genusCoprobacillus0.3595.79e-582.48e-56
speciesClostridium_hathewayi0.3461.04e-534.09e-52
speciesLachnospiraceae_bacterium_1_4_56FAA0.3452.47e-538.53e-52
speciesLachnospiraceae_bacterium_5_1_57FAA0.3452.53e-538.53e-52
speciesAnaerotruncus_colihominis0.3391.53e-514.81e-50
speciesRuminococcus_sp_5_1_39BFAA0.3361.71e-505.04e-49
genusAdlercreutzia0.3322.49e-496.53e-48
speciesAdlercreutzia_equolifaciens0.3322.49e-496.53e-48
speciesClostridium_bolteae0.3275.36e-481.33e-46
speciesCoprobacillus_unclassified0.3275.98e-481.41e-46
speciesRuminococcus_torques0.3215.02e-461.13e-44
speciesClostridium_symbiosum0.321.03e-452.21e-44
genusLachnospiraceae_noname0.3081.71e-423.51e-41
speciesErysipelotrichaceae_bacterium_2_2_44A0.3082.34e-424.55e-41
genusHoldemania0.3082.41e-424.55e-41
familySutterellaceae-0.3082.79e-425.06e-41
familyPrevotellaceae-0.3075.5e-429.61e-41
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.3051.68e-412.83e-40
speciesClostridium_ramosum0.3011.49e-402.43e-39
genusRuminococcus0.32.99e-404.7e-39
speciesClostridium_citroniae0.2988.98e-401.37e-38
speciesClostridium_asparagiforme0.291.35e-371.99e-36
speciesSubdoligranulum_sp_4_3_54A2FAA0.291.76e-372.52e-36
speciesRuminococcus_obeum0.2892.1e-372.92e-36
familyActinomycetaceae0.2885.23e-377.05e-36
genusActinomyces0.2876.58e-378.63e-36
speciesErysipelotrichaceae_bacterium_6_1_450.2837.28e-369.29e-35
classBetaproteobacteria-0.2831.04e-351.29e-34
speciesBlautia_producta0.2813.68e-354.4e-34
genusAnaerostipes0.2813.73e-354.4e-34
speciesEubacterium_hallii0.2798.31e-359.57e-34
speciesLachnospiraceae_bacterium_5_1_63FAA0.2781.86e-342.09e-33
speciesBlautia_hydrogenotrophica0.2772.84e-343.12e-33
orderBurkholderiales-0.2763.69e-343.96e-33
speciesClostridium_clostridioforme0.2732.7e-332.83e-32
speciesClostridiales_bacterium_1_7_47FAA0.271.65e-321.69e-31
orderBifidobacteriales0.2692.26e-322.22e-31
familyBifidobacteriaceae0.2692.26e-322.22e-31
genusBifidobacterium0.2677.11e-326.85e-31
speciesBifidobacterium_longum0.2634.61e-314.35e-30
genusFlavonifractor0.2611.3e-301.18e-29
speciesFlavonifractor_plautii0.2611.3e-301.18e-29
speciesRuminococcus_gnavus0.262.43e-302.16e-29
genusPrevotella-0.2562.43e-292.12e-28
speciesErysipelotrichaceae_bacterium_21_30.2512.3e-281.97e-27
familyClostridiaceae0.254.74e-284e-27
genusClostridium0.2481.5e-271.24e-26
genusSolobacterium0.2454.56e-273.65e-26
speciesSolobacterium_moorei0.2454.56e-273.65e-26
speciesDorea_formicigenerans0.2422.57e-262.02e-25
speciesClostridium_leptum0.2422.75e-262.13e-25
genusHaemophilus-0.2391.32e-251e-24
speciesHaemophilus_parainfluenzae-0.2381.85e-251.39e-24
speciesPrevotella_copri-0.2364.35e-253.21e-24
phylumBacteroidetes-0.2364.71e-253.35e-24
classBacteroidia-0.2364.75e-253.35e-24
orderBacteroidales-0.2364.75e-253.35e-24
orderPasteurellales-0.2357.83e-255.36e-24
familyPasteurellaceae-0.2357.83e-255.36e-24
genusDorea0.2322.53e-241.71e-23
orderActinomycetales0.2248.78e-235.84e-22
familyClostridiales_Family_XI_Incertae_Sedis0.2222.75e-221.78e-21
speciesEubacterium_sp_3_1_310.2222.76e-221.78e-21
familyClostridiales_noname0.227.12e-224.54e-21
speciesParaprevotella_xylaniphila-0.2113.03e-201.91e-19
orderBacillales0.213.71e-202.3e-19
speciesAnaerostipes_hadrus0.2088.6e-205.27e-19
familyBacillales_noname0.2089.22e-205.51e-19
genusGemella0.2089.22e-205.51e-19
speciesStreptococcus_sanguinis0.2089.55e-205.63e-19
speciesSutterella_wadsworthensis-0.2021.1e-186.41e-18
speciesStreptococcus_thermophilus0.22.21e-181.27e-17
genusSutterella-0.1994.01e-182.28e-17
familyStreptococcaceae0.1984.87e-182.74e-17
genusParaprevotella-0.1985.44e-183.02e-17
familyEnterococcaceae0.1977.66e-184.2e-17
speciesParaprevotella_unclassified-0.1961.15e-176.24e-17
genusClostridiales_noname0.1961.17e-176.28e-17
genusEnterococcus0.1961.27e-176.74e-17
genusStreptococcus0.1951.49e-177.81e-17
speciesPrevotella_stercorea-0.1951.66e-178.61e-17
speciesHoldemania_filiformis0.1951.76e-179.03e-17
speciesLachnospiraceae_bacterium_1_1_57FAA0.1952.03e-171.03e-16
classBacilli0.191.15e-165.77e-16
orderLactobacillales0.1882.26e-161.12e-15
speciesErysipelotrichaceae_bacterium_3_1_530.1882.66e-161.31e-15
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1858.23e-164e-15
genusCatenibacterium-0.1812.72e-151.3e-14
speciesCatenibacterium_mitsuokai-0.1812.72e-151.3e-14
speciesEubacterium_biforme-0.1796.1e-152.88e-14
genusButyrivibrio-0.1796.48e-153.03e-14
speciesLachnospiraceae_bacterium_6_1_63FAA0.1789.07e-154.2e-14
genusOdoribacter-0.1771.1e-145.04e-14
genusPhascolarctobacterium-0.1761.52e-146.83e-14
speciesPhascolarctobacterium_succinatutens-0.1761.52e-146.83e-14
speciesAnaerostipes_unclassified0.1761.69e-147.53e-14
genusParvimonas0.1761.79e-147.9e-14
speciesParvimonas_unclassified0.1761.87e-148.17e-14
speciesOdoribacter_splanchnicus-0.1743.26e-141.41e-13
speciesEubacterium_eligens-0.1734.7e-142.02e-13
speciesParaprevotella_clara-0.1735.03e-142.14e-13
genusClostridiaceae_noname0.1726.71e-142.8e-13
speciesClostridiaceae_bacterium_JC1180.1726.71e-142.8e-13
speciesEubacterium_limosum0.1727.78e-143.22e-13
speciesLachnospiraceae_bacterium_2_1_58FAA0.1673.72e-131.52e-12
speciesDialister_invisus0.1673.73e-131.52e-12
speciesRoseburia_inulinivorans-0.1673.88e-131.57e-12
speciesEggerthella_sp_1_3_56FAA0.1664.96e-131.98e-12
speciesEnterococcus_faecium0.1656.78e-132.69e-12
speciesLactococcus_lactis0.1656.88e-132.71e-12
familyAcidaminococcaceae-0.1657.06e-132.75e-12
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1641.06e-124.1e-12
genusLactococcus0.1631.3e-124.99e-12
genusSutterellaceae_unclassified-0.1631.51e-125.75e-12
speciesAlistipes_senegalensis-0.1594.06e-121.53e-11
speciesButyrivibrio_crossotus-0.1595.45e-122.01e-11
classClostridia0.1585.46e-122.01e-11
orderClostridiales0.1585.46e-122.01e-11
genusPropionibacterium0.1586.74e-122.47e-11
genusCoriobacteriaceae_noname0.1561.13e-114.1e-11
genusLeuconostoc0.1561.25e-114.5e-11
speciesDesulfovibrio_piger-0.1542.06e-117.37e-11
speciesCoriobacteriaceae_bacterium_phI0.1542.16e-117.67e-11
speciesBacteroides_plebeius-0.1532.84e-111e-10
speciesLactobacillus_rhamnosus0.1533.12e-111.09e-10
speciesRuminococcus_bromii0.1524.22e-111.46e-10
speciesParabacteroides_merdae-0.1498.27e-112.85e-10
speciesPropionibacterium_freudenreichii0.1462.39e-108.17e-10
speciesLactobacillus_ruminis-0.1453.21e-101.09e-09
familyLachnospiraceae0.1443.52e-101.19e-09
speciesStreptococcus_salivarius0.1426.66e-102.23e-09
speciesLactobacillus_delbrueckii0.1427.02e-102.33e-09
speciesAlistipes_shahii-0.1418.69e-102.87e-09
speciesStreptococcus_australis0.141.16e-093.8e-09
speciesHoldemania_unclassified0.1391.7e-095.53e-09
speciesLactobacillus_casei_paracasei0.1381.82e-095.88e-09
speciesClostridium_bartlettii0.1382.29e-097.35e-09
familyOscillospiraceae0.1363.31e-091.05e-08
genusOscillibacter0.1363.31e-091.05e-08
speciesMitsuokella_multacida-0.1363.46e-091.09e-08
genusPeptoniphilus0.1363.54e-091.11e-08
speciesHoldemania_sp_AP20.1363.91e-091.21e-08
speciesBifidobacterium_animalis0.1354.67e-091.44e-08
familyLeuconostocaceae0.1354.91e-091.5e-08
speciesMitsuokella_unclassified-0.1346.11e-091.86e-08
genusMitsuokella-0.1346.73e-092.04e-08
genusPeptostreptococcus0.1346.77e-092.04e-08
speciesStreptococcus_anginosus0.1338.02e-092.4e-08
speciesBacteroides_faecis-0.1321.09e-083.24e-08
familyPropionibacteriaceae0.1311.15e-083.39e-08
familyRuminococcaceae0.1311.16e-083.4e-08
speciesPeptostreptococcus_anaerobius0.1311.29e-083.76e-08
genusRoseburia-0.1311.37e-083.97e-08
speciesEubacterium_dolichum0.1292.38e-086.85e-08
speciesClostridium_sp_KLE_17550.1282.98e-088.52e-08
phylumFirmicutes0.1273.34e-089.5e-08
classNegativicutes-0.1273.63e-081.02e-07
orderSelenomonadales-0.1273.63e-081.02e-07
speciesCoprococcus_sp_ART55_1-0.1273.67e-081.02e-07
speciesOscillibacter_unclassified0.1264.71e-081.31e-07
genusDialister0.1255.22e-081.44e-07
classErysipelotrichia0.1255.92e-081.61e-07
orderErysipelotrichales0.1255.92e-081.61e-07
familyErysipelotrichaceae0.1255.92e-081.61e-07
speciesVeillonella_unclassified-0.1247.73e-082.08e-07
genusMegasphaera-0.1238.88e-082.38e-07
genusFaecalibacterium-0.1211.45e-073.84e-07
speciesFaecalibacterium_prausnitzii-0.1211.45e-073.84e-07
speciesRuminococcus_sp_JC3040.1211.47e-073.88e-07
speciesStreptococcus_parasanguinis0.1192.24e-075.87e-07
genusActinobacillus-0.1156.21e-071.61e-06
speciesActinobacillus_unclassified-0.1156.21e-071.61e-06
speciesBacteroides_coprocola-0.1156.83e-071.76e-06
speciesEscherichia_coli0.1147.24e-071.86e-06
speciesDorea_longicatena0.1147.4e-071.89e-06
speciesStreptococcus_gordonii0.1147.45e-071.89e-06
speciesBifidobacterium_pseudocatenulatum0.1138.71e-072.2e-06
genusEscherichia0.1139.14e-072.29e-06
genusOxalobacter-0.1121.31e-063.25e-06
speciesOxalobacter_formigenes-0.1121.31e-063.25e-06
speciesStreptococcus_mitis_oralis_pneumoniae0.1121.33e-063.29e-06
genusRothia0.1111.35e-063.32e-06
familyMicrococcaceae0.1111.43e-063.5e-06
speciesVeillonella_atypica-0.1111.53e-063.72e-06
speciesBacteroides_vulgatus-0.1092.12e-065.13e-06
genusVeillonella-0.1082.64e-066.36e-06
speciesCoprococcus_eutactus-0.1082.69e-066.45e-06
genusBarnesiella-0.1073.24e-067.68e-06
speciesBarnesiella_intestinihominis-0.1073.24e-067.68e-06
familyOxalobacteraceae-0.1073.51e-068.28e-06
speciesLactobacillus_plantarum0.1073.64e-068.55e-06
genusCoprobacter-0.1073.78e-068.79e-06
speciesCoprobacter_fastidiosus-0.1073.78e-068.79e-06
speciesVeillonella_dispar-0.1063.94e-069.12e-06
orderEnterobacteriales0.1064.35e-069.97e-06
familyEnterobacteriaceae0.1064.35e-069.97e-06
speciesClostridium_spiroforme0.1055.27e-061.2e-05
speciesCampylobacter_concisus-0.1055.72e-061.3e-05
speciesLactobacillus_gasseri0.1046.72e-061.52e-05
speciesGemella_morbillorum0.1047.08e-061.59e-05
familyPorphyromonadaceae-0.1037.58e-061.7e-05
familyPeptostreptococcaceae0.1038.1e-061.8e-05
speciesPrevotella_buccae-0.1038.71e-061.93e-05
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1029.49e-062.09e-05
speciesRothia_mucilaginosa0.1021.09e-052.39e-05
genusDesulfovibrio-0.1011.18e-052.58e-05
speciesCoprobacillus_sp_29_10.1011.23e-052.66e-05
speciesBacteroides_pectinophilus-0.1011.23e-052.66e-05
speciesAlistipes_sp_AP110.1011.28e-052.76e-05
speciesStreptococcus_vestibularis0.1011.33e-052.85e-05
genusCollinsella0.11.38e-052.95e-05
speciesBacteroides_dorei-0.11.52e-053.23e-05
speciesCoprobacillus_sp_D60.11.56e-053.3e-05
speciesStreptococcus_mutans0.0991.98e-054.17e-05
speciesEscherichia_unclassified0.0982.07e-054.34e-05
speciesMegasphaera_elsdenii-0.0972.51e-055.24e-05
speciesFusobacterium_mortiferum-0.0972.71e-055.63e-05
speciesClostridium_sp_ATCC_BAA_4420.0963.03e-056.27e-05
familyLactobacillaceae0.0963.08e-056.35e-05
speciesBacteroides_coprophilus-0.0963.11e-056.38e-05
speciesHaemophilus_paraphrohaemolyticus-0.0954.2e-058.58e-05
speciesMegasphaera_unclassified-0.0935.95e-050.000121
speciesEubacterium_ramulus0.0926.32e-050.000127
genusButyricimonas-0.0926.34e-050.000127
speciesButyricimonas_synergistica-0.0926.34e-050.000127
speciesBacteroides_caccae-0.0926.34e-050.000127
speciesBilophila_wadsworthia0.0918.28e-050.000165
speciesAlistipes_putredinis-0.0918.78e-050.000174
speciesVeillonella_parvula-0.099.72e-050.000192
speciesCoprococcus_comes0.0890.0001170.00023
genusLactobacillus0.0890.0001250.000245
genusParabacteroides-0.0880.0001290.000252
classMethanobacteria-0.0880.0001340.000258
orderMethanobacteriales-0.0880.0001340.000258
familyMethanobacteriaceae-0.0880.0001340.000258
genusBilophila0.0880.0001350.000259
genusPorphyromonas0.0880.0001470.000281
speciesMethanobrevibacter_smithii-0.0880.0001480.000282
phylumEuryarchaeota-0.0870.0001550.000294
speciesBifidobacterium_bifidum0.0870.0001720.000325
genusPeptostreptococcaceae_noname0.0870.0001750.000329
speciesBilophila_unclassified0.0870.000180.000337
speciesBacteroides_massiliensis-0.0860.0001980.000369
genusMethanobrevibacter-0.0860.0002060.000383
genusParasutterella-0.0840.0002620.000483
speciesParasutterella_excrementihominis-0.0840.0002620.000483
speciesEnterococcus_faecalis0.0830.0003110.000571
phylumVerrucomicrobia0.0830.0003320.000596
classVerrucomicrobiae0.0830.0003320.000596
orderVerrucomicrobiales0.0830.0003320.000596
familyVerrucomicrobiaceae0.0830.0003320.000596
genusAkkermansia0.0830.0003320.000596
speciesAkkermansia_muciniphila0.0830.0003320.000596
speciesEubacterium_siraeum-0.0830.0003490.000624
orderPseudomonadales0.0820.0003790.000675
familyStaphylococcaceae0.0820.0004090.000726
genusAnaerotruncus0.0810.0004740.000838
speciesPorphyromonas_uenonis0.0810.0004840.000852
speciesPeptostreptococcus_stomatis0.080.0005040.000881
speciesPorphyromonas_asaccharolytica0.080.0005040.000881
speciesClostridium_nexile0.080.0005730.000998
speciesBacteroides_finegoldii-0.0790.0006750.00117
genusErysipelotrichaceae_noname0.0770.0008220.00142
speciesOscillibacter_sp_KLE_17450.0770.0008560.00147
genusAggregatibacter-0.0770.0008760.0015
speciesBacteroides_eggerthii-0.0760.0009450.00162
speciesBifidobacterium_dentium0.0760.001010.00172
speciesPrevotella_bivia0.0760.001060.0018
speciesLactobacillus_sanfranciscensis0.0750.001140.00193
speciesDialister_succinatiphilus-0.0750.001220.00206
genusStaphylococcus0.0740.00130.00218
genusButyricicoccus0.0730.001630.00272
speciesButyricicoccus_pullicaecorum0.0730.001630.00272
speciesAnaerotruncus_unclassified-0.0720.001750.00291
speciesLactobacillus_acidophilus0.0720.00180.00298
speciesAlistipes_unclassified0.0710.002050.00338
speciesButyrivibrio_unclassified-0.0710.002110.00347
orderAeromonadales-0.0710.00220.00361
speciesMegamonas_hypermegale-0.070.002570.0042
speciesMegamonas_unclassified-0.070.002610.00425
speciesRoseburia_intestinalis-0.0690.002690.00436
genusMegamonas-0.0690.002810.00454
speciesAggregatibacter_segnis-0.0690.002910.00469
classEpsilonproteobacteria-0.0680.003130.00501
orderCampylobacterales-0.0680.003130.00501
speciesRuminococcus_champanellensis-0.0680.003320.00529
speciesLachnospiraceae_bacterium_7_1_58FAA0.0670.003660.00582
speciesMegamonas_funiformis-0.0670.003750.00594
speciesLactococcus_phage_936_sensu_lato-0.0660.004120.0065
speciesAcidaminococcus_intestini-0.0660.004360.00686
speciesBacteroides_xylanisolvens-0.0650.004940.00775
speciesAlistipes_finegoldii-0.0650.004970.00777
speciesClostridium_sp_L2_50-0.0640.005930.00924
speciesParabacteroides_sp_D13-0.0630.006170.00958
speciesBacteroides_fragilis0.0630.006240.00966
speciesBifidobacterium_angulatum-0.0610.00790.0122
familyVeillonellaceae-0.0610.008270.0127
familyCampylobacteraceae-0.0610.008350.0128
classDeltaproteobacteria0.060.008880.0135
orderDesulfovibrionales0.060.008880.0135
familyDesulfovibrionaceae0.060.008880.0135
speciesRoseburia_hominis-0.060.009060.0137
genusCampylobacter-0.0590.0110.0166
speciesWeissella_cibaria0.0590.01140.0171
familyBacteroidaceae-0.0570.01340.0199
genusSuccinatimonas-0.0570.01340.0199
genusBacteroides-0.0570.01340.0199
speciesSuccinatimonas_hippei-0.0570.01340.0199
familyBacteroidales_noname-0.0570.01410.0207
genusBacteroidales_noname-0.0570.01410.0207
speciesBacteroidales_bacterium_ph8-0.0570.01410.0207
speciesCollinsella_aerofaciens0.0560.0160.0235
speciesBifidobacterium_catenulatum0.0560.01610.0235
speciesMegamonas_rupellensis-0.0550.01650.024
speciesMegasphaera_micronuciformis-0.0540.01880.0273
familySuccinivibrionaceae-0.0540.020.029
speciesKlebsiella_unclassified0.0530.02130.0307
speciesCoprococcus_catus0.0530.02190.0315
speciesLeuconostoc_lactis0.0520.02350.0337
speciesParabacteroides_distasonis-0.0520.02490.0356
speciesAcidaminococcus_fermentans-0.0520.0250.0356
speciesOlsenella_unclassified-0.0520.02550.0363
speciesBacteroides_salanitronis-0.0520.02580.0366
speciesRuminococcus_callidus-0.0510.02670.0377
speciesLactobacillus_fermentum0.0510.02860.0403
speciesKlebsiella_oxytoca0.050.02980.0419
speciesOdoribacter_unclassified-0.050.03110.0436
speciesClostridium_perfringens-0.0480.03840.0536
genusWeissella0.0480.03990.0556
speciesHaemophilus_sputorum-0.0470.04080.0566
speciesBacteroides_stercoris-0.0470.04150.0574
genusPseudoflavonifractor0.0470.04310.0593
speciesPseudoflavonifractor_capillosus0.0470.04310.0593
speciesBifidobacterium_breve0.0470.04350.0597
speciesCollinsella_unclassified0.0460.04470.0612
speciesLachnospiraceae_bacterium_2_1_46FAA0.0460.04830.0659
speciesLactobacillus_oris0.0450.05360.0729
phylumProteobacteria-0.0450.0540.0732
genusSubdoligranulum0.0440.0570.0771
speciesMethanobrevibacter_unclassified-0.0430.0620.0836
speciesLactococcus_garvieae0.0420.0710.0955
speciesParabacteroides_johnsonii-0.0410.07440.0998
genusMethanosphaera-0.0410.07770.104
speciesMethanosphaera_stadtmanae-0.0410.07770.104
speciesBacteroides_cellulosilyticus-0.0390.08950.119
speciesPeptostreptococcaceae_noname_unclassified-0.0390.09240.123
speciesStreptococcus_phage_Sfi210.0390.09270.123
speciesAcidaminococcus_unclassified0.0380.10.132
familyViruses_noname-0.0380.1020.134
genusViruses_noname-0.0380.1020.134
genusRuminococcaceae_noname0.0370.1080.141
speciesRuminococcaceae_bacterium_D160.0370.1080.141
familyEubacteriaceae0.0370.1090.142
genusCitrobacter0.0370.1120.145
classGammaproteobacteria0.0370.1140.147
genusEubacterium0.0370.1140.147
speciesCollinsella_intestinalis0.0360.1180.152
speciesLactobacillus_amylovorus0.0340.1380.177
genusOlsenella-0.0340.1390.178
speciesLactococcus_phage_bIL670.0340.1420.181
speciesOdoribacter_laneus0.0330.1530.195
speciesLactobacillus_mucosae-0.0330.1570.199
speciesWeissella_confusa0.0330.1580.2
speciesDesulfovibrio_desulfuricans-0.0320.1650.208
speciesKlebsiella_pneumoniae-0.0320.1660.209
speciesAlistipes_indistinctus-0.0310.1870.234
speciesEubacterium_ventriosum0.0310.1870.234
genusAcidaminococcaceae_unclassified-0.030.1890.236
speciesCitrobacter_freundii0.030.1920.238
speciesDorea_unclassified-0.030.1920.238
speciesSubdoligranulum_unclassified0.030.1950.242
speciesCitrobacter_unclassified0.030.1970.243
familyMyoviridae-0.030.1990.245
genusTunalikevirus-0.030.1990.245
speciesLactobacillus_vaginalis0.030.20.245
familyPodoviridae0.0290.2090.256
speciesEnterobacter_aerogenes-0.0290.2150.262
speciesLactococcus_phage_phi7-0.0290.2160.262
speciesBacteroides_salyersiae-0.0290.2160.262
familyBurkholderiales_noname-0.0290.2170.263
speciesAlistipes_onderdonkii0.0270.2350.284
genusCoprococcus0.0270.2430.293
genusBurkholderiales_noname-0.0270.2520.302
speciesBurkholderiales_bacterium_1_1_47-0.0270.2520.302
genusPyramidobacter0.0260.2590.309
speciesPyramidobacter_piscolens0.0260.2590.309
speciesBacteroides_thetaiotaomicron-0.0260.2630.313
speciesSlackia_piriformis-0.0250.2770.329
speciesParabacteroides_goldsteinii-0.0240.3040.36
speciesBacteroides_barnesiae-0.0240.3050.36
phylumFusobacteria-0.0230.3150.369
classFusobacteriia-0.0230.3150.369
orderFusobacteriales-0.0230.3150.369
speciesEnterobacteria_phage_HK5440.0230.3160.369
speciesLachnospiraceae_bacterium_3_1_46FAA0.0230.330.385
speciesKlebsiella_phage_KP36-0.0220.3380.392
speciesStreptococcus_lutetiensis0.0220.3380.392
speciesFusobacterium_varium0.0220.3520.407
phylumSynergistetes0.0210.3580.409
classSynergistia0.0210.3580.409
orderSynergistales0.0210.3580.409
familySynergistaceae0.0210.3580.409
speciesBacteroides_clarus-0.0210.3580.409
speciesAlistipes_sp_HGB5-0.0210.360.41
genusMorganella0.0210.3660.414
speciesMorganella_morganii0.0210.3660.414
speciesStreptococcus_pasteurianus0.0210.3670.414
speciesLactobacillus_reuteri0.0210.3670.414
speciesStreptococcus_infantarius0.0210.3750.422
genusProteus-0.020.3860.434
speciesFusobacterium_ulcerans0.0190.4060.455
genusC2likevirus0.0190.4080.456
speciesBacteroides_sp_3_1_190.0190.410.457
familyRikenellaceae-0.0190.4220.469
genusAlistipes-0.0190.4220.469
familyFusobacteriaceae-0.0180.4290.475
genusFusobacterium-0.0180.4380.483
speciesBacteroides_intestinalis-0.0180.4380.483
speciesLactobacillus_crispatus0.0180.4440.489
speciesBacteroides_oleiciplenus0.0170.4590.504
speciesEubacterium_rectale-0.0160.4780.523
speciesC2likevirus_unclassified0.0160.4850.53
speciesLactobacillus_salivarius-0.0160.490.534
speciesBacteroides_sp_4_3_47FAA0.0160.4990.543
genusMyoviridae_noname-0.0150.5140.558
speciesBacteroides_sp_2_1_22-0.0150.5250.568
genusPantoea0.0140.5420.584
speciesPantoea_unclassified0.0140.5420.584
speciesEubacterium_cylindroides0.0140.5590.601
genusAcidaminococcus-0.0130.5730.615
speciesBifidobacterium_adolescentis0.0120.5950.636
speciesBacteroides_ovatus-0.0120.5960.636
genusSiphoviridae_noname0.0120.6010.64
speciesBacteroides_fluxus0.0120.6040.642
speciesProteus_mirabilis-0.0120.6160.653
speciesBacteroides_sp_1_1_6-0.0110.6320.669
speciesBacteroides_uniformis-0.010.680.718
speciesCollinsella_tanakaei0.0090.6860.723
speciesTuricibacter_sanguinis0.0080.730.767
speciesBacteroides_nordii-0.0080.7340.77
genusKlebsiella-0.0070.7720.808
speciesParabacteroides_sp_20_30.0060.7880.821
speciesEnterobacter_cloacae0.0060.7880.821
speciesTuricibacter_unclassified0.0060.7970.829
genusEnterobacter0.0060.7990.829
speciesParabacteroides_unclassified-0.0040.8530.883
speciesKlebsiella_sp_MS_92_30.0040.8650.893
familySiphoviridae0.0030.8910.918
speciesOscillibacter_sp_KLE_17280.0030.8940.919
speciesRoseburia_unclassified0.0030.8980.921
genusTuricibacter0.0030.9010.922
speciesLactococcus_phage_jm2-0.0030.9070.927
speciesLactococcus_phage_P6800.0020.9240.942
genusLambdalikevirus0.0020.9320.948
phylumViruses_noname0.0020.9360.948
classViruses_noname0.0020.9360.948
speciesRuminococcus_lactaris-0.0020.9420.952
speciesSutterella_parvirubra0.0010.950.958
genusSlackia0.0010.9540.96
orderCaudovirales-0.0010.9560.96
speciesFusobacterium_nucleatum-0.0010.9670.969
orderViruses_noname0.00.9960.996
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.0007942182192310.0003580169579786.06607141229e-062590.855944
Rheumatoid arthritisChina127980.001204449989480.001335677010080.003637020469674981.66072
Type II diabetesDenmark752770.0002211520808260.0001598008429810.0166161046069498516.3405
Crohns diseaseSpain17660.000714238314660.0005917138889740.119364276211442347.9568
Liver cirrhosisChina1201140.0002135364627340.0001987051145290.2009000196881937765.0912
ObesityDenmark1691230.0001680098920350.0001465396999590.4315267569131778058.4657
Ulcerative colitisSpain78660.0007245476267980.0005917138889740.4769635073111852961.1236
Colorectal cancerAustria64350.00328205570670.006657265804150.6007426188372049069.326
Type II diabetesSweden53920.001139421124690.001001291827470.7313104733942235275.6925
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382