MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-23 18:38:09 PST
Job id & description: 2214, spdbin
Query type: protein
Count queries & homologs: 1, 258
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
SPD2245033CompleteK02055COG0687FusobacteriaFusobacterium100.0100.092.98
SPD2259001CompleteK02055COG0687FusobacteriaFusobacterium100.0100.065.31
SPD2258364CompleteK02055COG0687FusobacteriaFusobacterium100.0100.065.01
SPD2247042CompleteK02055COG0687Fusobacteriaunknown100.0100.063.27
SPD2247031CompleteK02055COG0687Fusobacteriaunknown99.7199.7159.94
SPD2244275CompleteK02055COG0687FusobacteriaFusobacterium100.0100.062.1
SPD2247250CompleteK02055COG0687FusobacteriaFusobacterium100.0100.062.39
SPD2245013CompleteK02055COG0687FusobacteriaFusobacterium100.0100.058.31
SPD2244956CompleteK02055COG0687FusobacteriaFusobacterium100.0100.057.73
SPD2247179CompleteK02055COG0687Fusobacteriaunknown99.7199.7156.73
SPD2052049CompleteK02055COG0687unknownunknown100.097.4953.28
SPD2142883CompleteK02055COG0687unknownunknown98.2596.0155.62
SPD1984360CompleteK11069COG0687SpirochaetesTreponema96.4990.6842.81
SPD2180637CompleteK11069COG0687SpirochaetesTreponema96.4995.6842.51
SPD2290212Lack 3'-endK11069COG0687unknownunknown98.8399.7137.46
SPD2218707CompleteK11069COG0687unknownunknown97.3796.2236.18
SPD2188858CompleteK11069COG0687unknownunknown88.8985.8838.69
SPD2170452CompleteK11069COG0687unknownunknown99.7199.7135.88
SPD2069078Lack 5'-endK11069COG0687unknownunknown96.7892.7236.98
SPD2168675CompleteK11069COG0687unknownunknown99.7199.7135.31
SPD2171373CompleteK11069COG0687unknownunknown95.9194.2534.03
SPD2183176CompleteK11069COG0687unknownunknown97.9596.5433.63
SPD2203604CompleteK11069COG0687unknownunknown97.9597.9737.07
SPD2254640CompleteK11069COG0687unknownunknown96.4997.0732.14
SPD2126508CompleteK11069COG0687unknownunknown95.6195.7435.34
SPD2167437CompleteK11069COG0687ProteobacteriaEscherichia94.7493.9735.03
SPD2156028CompleteK11069COG0687unknownunknown98.8398.8534.47
SPD2128297CompleteK11069COG0687unknownunknown98.8398.8635.28
SPD2135375CompleteK11069COG0687unknownunknown83.3381.4836.21
SPD2122680CompleteK11069COG0687unknownunknown98.8398.8634.72
SPD2185471CompleteK11069COG0687Proteobacteriaunknown98.8398.8533.14
SPD2112380CompleteK11069COG0687unknownunknown97.9595.7532.07
SPD2166912CompleteK11069COG0687ProteobacteriaProvidencia98.8398.8532.95
SPD2035289CompleteK11069COG0687unknownunknown99.7198.6132.13
SPD2141497CompleteK11069COG0687unknownunknown98.8398.8632.39
SPD2160731CompleteK11069COG0687ProteobacteriaCitrobacter94.7493.734.51
SPD2039800CompleteK11069COG0687unknownunknown99.7198.6131.86
SPD2225459CompleteK11069COG0687ProteobacteriaEnterobacter98.8398.8432.86
SPD2223727CompleteK11069COG0687ProteobacteriaEnterobacter98.8398.8432.18
SPD1954345CompleteK11069COG0687unknownunknown93.2789.432.33
SPD2222327CompleteK11069COG0687ProteobacteriaEnterobacter98.8398.8431.9
SPD2178108CompleteK11069COG0687ProteobacteriaCitrobacter94.7493.9733.23
SPD1911681CompleteK11069COG0687unknownunknown93.2788.4432.02
SPD2223865CompleteK11069COG0687ProteobacteriaEnterobacter98.8398.8431.9
SPD2111290CompleteK11069COG0687Proteobacteriaunknown92.6990.434.04
SPD2204744CompleteK11069COG0687ProteobacteriaBilophila94.4494.4931.63
SPD2226837CompleteK11069COG0687unknownunknown98.5499.1332.75
SPD2491509Lack 3'-endK11069COG0687Proteobacteriaunknown82.4686.1136.71
SPD2236798CompleteK11069COG0687unknownunknown94.1594.4633.73
SPD2176229CompleteK11069COG0687ProteobacteriaKlebsiella95.3294.5432.44
SPD1917926Lack 5'-endK11069COG0687unknownunknown94.7492.233.82
SPD2198992Lack 5'-endK11069COG0687ProteobacteriaBilophila93.2793.0631.1
SPD2330592Lack 5'-endK11069COG0687unknownunknown93.5798.8131.83
SPD2165521Lack 5'-endK11069COG0687ProteobacteriaKlebsiella95.3294.2732.14
SPD2178066CompleteK11069COG0687ProteobacteriaKlebsiella95.3294.5431.55
SPD2659304Lack 3'-endK11069COG0687ProteobacteriaEnterobacter88.8996.1533.87
SPD2185488CompleteK11069COG0687ProteobacteriaProteus98.8398.8531.9
SPD2170437CompleteK11069COG0687ProteobacteriaKlebsiella95.3294.5431.55
SPD2124753CompleteK11069COG0687unknownunknown98.8397.7332.19
SPD2211791CompleteK11069COG0687ProteobacteriaBilophila91.5291.5931.68
SPD2176054CompleteK11069COG0687ProteobacteriaEnterobacter92.6991.9532.72
SPD2111886CompleteK11069COG0687FirmicutesDialister99.7199.7231.75
SPD2170135CompleteK11069COG0687ProteobacteriaKlebsiella95.3294.5430.95
SPD2062236CompleteK11069COG0687unknownunknown86.5581.2835.91
SPD1540648CompleteK11069COG0687unknownunknown93.2781.0230.75
SPD2093574CompleteK11069COG0687unknownunknown84.2182.5433.89
SPD2633236Lack 5'-endK11069COG0687unknownunknown90.6499.6832.91
SPD2199391CompleteK11069COG0687unknownunknown98.8398.8433.05
SPD2178438CompleteK11069COG0687ProteobacteriaAggregatibacter91.5291.0932.12
SPD1939797CompleteK11073COG0687ProteobacteriaCitrobacter89.1887.333.13
SPD1882083CompleteK11069COG0687unknownunknown93.2788.831.53
SPD1878297CompleteK11073COG0687ProteobacteriaKlebsiella88.8985.6433.23
SPD2118775CompleteK11069COG0687FirmicutesDialister99.7199.7231.37
SPD2081024CompleteK11069COG0687unknownunknown99.7199.7231.67
SPD2393126Lack 3'-endK11073COG0687ProteobacteriaCitrobacter87.4395.1733.02
SPD2111520CompleteK11069COG0687FirmicutesDialister99.7199.7231.2
SPD2158317CompleteK11069COG0687unknownunknown99.4299.7131.64
SPD2053135CompleteK11069COG0687FirmicutesAnaerostipes97.9596.6631.74
SPD2052439CompleteK11069COG0687FirmicutesAnaerostipes95.6194.4332.47
SPD1937940CompleteK11073COG0687ProteobacteriaEnterobacter89.1887.331.6
SPD1880966CompleteK11069COG0687unknownunknown93.8689.3330.75
SPD2652623Lack 5'-endK11069COG0687unknownunknown90.0699.6833.64
SPD1923540CompleteK11069COG0687FirmicutesClostridium97.3795.6930.06
SPD1793358CompleteK11069COG0687ProteobacteriaHaemophilus97.0887.7631.3
SPD1957910CompleteK11069COG0687unknownunknown92.1189.430.4
SPD2118590CompleteK11069COG0687FirmicutesAcidaminococcus95.3294.0530.86
SPD2114775CompleteK11069COG0687FirmicutesAcidaminococcus94.7493.4831.64
SPD1939935CompleteK11073COG0687ProteobacteriaCitrobacter89.1887.332.82
SPD2402949Lack 3'-endK11069COG0687ProteobacteriaBilophila89.4793.3533.02
SPD2033468Lack 5'-endK11069COG0687unknownunknown99.7198.3431.11
SPD1939779CompleteK11073COG0687ProteobacteriaEscherichia89.1887.332.82
SPD1939767CompleteK11073COG0687ProteobacteriaKlebsiella88.8987.0332.62
SPD1960832CompleteK11069COG0687Firmicutesunknown85.9678.835.02
SPD2112886CompleteK11069COG0687FirmicutesAcidaminococcus92.489.831.68
SPD2120779CompleteK11069COG0687Firmicutesunknown95.0394.3331.95
SPD1918335CompleteK11069COG0687unknownunknown93.2789.5230.21
SPD1899702CompleteK11069COG0687unknownunknown96.4990.6232.38
SPD2079712CompleteK11069COG0687unknownunknown95.6194.132.45
SPD1932686CompleteK11073COG0687ProteobacteriaKlebsiella89.1887.332.21
SPD1940993CompleteK11069COG0687unknownunknown92.1189.1630.09
SPD1468950CompleteK11073COG0687ProteobacteriaEscherichia86.2674.0532.8
SPD1838035CompleteK11069COG0687ProteobacteriaAggregatibacter99.7195.7930.46
SPD2544325Lack 3'-endK11069COG0687ProteobacteriaAggregatibacter75.1579.6936.88
SPD2100637CompleteK11069COG0687FirmicutesClostridium86.5582.4934.78
SPD1938455CompleteK11073COG0687ProteobacteriaEnterobacter86.8484.5932.28
SPD2130686CompleteK11069COG0687FirmicutesAcidaminococcus98.8398.8631.44
SPD1957209CompleteK11069COG0687unknownunknown92.489.6730.21
SPD1980520Lack 5'-endK11069COG0687unknownunknown85.6779.2335.35
SPD1940068CompleteK11073COG0687ProteobacteriaEnterobacter86.8484.5931.65
SPD1578766CompleteK11069COG0687FirmicutesOribacterium90.3575.6832.72
SPD1991819CompleteK11069COG0687ProteobacteriaHaemophilus91.5287.1231.6
SPD1937808CompleteK11073COG0687ProteobacteriaEnterobacter86.8484.5931.33
SPD1421205Lack 5'-endK11069COG0687Firmicutesunknown91.5276.9431.19
SPD1938901CompleteK11073COG0687ProteobacteriaEnterobacter86.8484.5931.33
SPD2147999CompleteK11069COG0687unknownunknown98.8399.1431.16
SPD1960079CompleteK11069COG0687FirmicutesEubacterium84.2178.5332.88
SPD1814248Lack 5'-endK11069COG0687FirmicutesEubacterium84.2175.6532.88
SPD2100221CompleteK11069COG0687FirmicutesStreptococcus97.6696.932.38
SPD1938362CompleteK11073COG0687ProteobacteriaEnterobacter86.8484.5931.01
SPD1961436CompleteK11069COG0687unknownunknown95.3293.1931.1
SPD2174745CompleteK11069COG0687Firmicutesunknown98.5497.1332.07
SPD2116363CompleteK11069COG0687unknownunknown98.8399.1532.11
SPD1878521CompleteK11069COG0687ProteobacteriaHaemophilus99.7195.4830.33
SPD2115238CompleteK11069COG0687Firmicutesunknown94.7494.0530.56
SPD1962713CompleteK11069COG0687unknownunknown95.3293.1930.9
SPD2222671CompleteK11069COG0687unknownunknown88.8988.3733.76
SPD2105716CompleteK11069COG0687FirmicutesMegasphaera86.5584.4630.79
SPD2112399CompleteK11069COG0687FirmicutesAcidaminococcus94.4493.230.84
SPD2143231CompleteK11069COG0687unknownunknown98.5498.8630.31
SPD1960613CompleteK11069COG0687unknownunknown84.877.4532.99
SPD2121063CompleteK11069COG0687unknownunknown93.2790.6531.5
SPD2090161CompleteK11069COG0687FirmicutesStreptococcus97.9594.6532.07
SPD2111541CompleteK11069COG0687unknownunknown98.8399.1530.7
SPD1897462CompleteK11069COG0687unknownunknown94.7490.3730.0
SPD2410227Lack 5'-endK11069COG0687unknownunknown90.6499.0931.1
SPD2123867CompleteK11069COG0687unknownunknown75.4472.1635.52
SPD2075799CompleteK11069COG0687FirmicutesStreptococcus87.7285.4330.97
SPD1961159CompleteK11073COG0687Proteobacteriaunknown82.7580.9831.33
SPD2113164CompleteK11069COG0687unknownunknown98.8399.1531.55
SPD2097312CompleteK11069COG0687FirmicutesStreptococcus97.9594.6531.78
SPD2086237CompleteK11069COG0687FirmicutesStreptococcus89.7787.9232.08
SPD2045348CompleteK11069COG0687FirmicutesClostridium98.8398.3331.2
SPD3585934Lack both endsK11069COG0687ProteobacteriaHaemophilus73.9898.8235.38
SPD2117941CompleteK11069COG0687unknownunknown98.8396.3230.43
SPD2035951CompleteK11069COG0687unknownunknown99.1298.3330.39
SPD2556571Lack both endsK11069COG0687FirmicutesStreptococcus88.693.132.24
SPD2092634CompleteK11069COG0687FirmicutesStreptococcus97.9594.6532.27
SPD1954023CompleteK11069COG0687FirmicutesEubacterium84.2178.5332.19
SPD2380886Lack 5'-endK11069COG0687Firmicutesunknown84.586.431.72
SPD2072923CompleteK11069COG0687FirmicutesStreptococcus92.6992.1631.44
SPD2052202CompleteK11069COG0687unknownunknown98.8397.7730.06
SPD2222309CompleteK11069COG0687Firmicutesunknown83.0480.8132.63
SPD2200921CompleteK11069COG0687unknownunknown82.7581.530.31
SPD2084064CompleteK11069COG0687FirmicutesStreptococcus96.292.732.54
SPD2086926CompleteK11069COG0687FirmicutesStreptococcus97.9594.3831.98
SPD2018738CompleteK11073COG0687ProteobacteriaSuccinatimonas83.9283.9831.15
SPD2089207CompleteK11069COG0687FirmicutesStreptococcus88.8987.0831.75
SPD2140146CompleteK11069COG0687unknownunknown80.9979.7734.03
SPD1943330CompleteK11069COG0687unknownunknown81.2976.4233.33
SPD3011648Lack 3'-endK11069COG0687unknownunknown83.0495.8532.52
SPD2143706CompleteK11069COG0687unknownunknown82.4681.232.99
SPD2070666CompleteK11069COG0687FirmicutesEnterococcus93.2789.9230.67
SPD2103094CompleteK11069COG0687Firmicutesunknown80.9977.6833.57
SPD2017117CompleteK11069COG0687FirmicutesMitsuokella88.0185.9130.48
SPD2075695CompleteK11069COG0687FirmicutesLactobacillus93.8690.4830.21
SPD1898574CompleteK11069COG0687unknownunknown83.3377.8133.0
SPD2160973Lack 5'-endK11069COG0687unknownunknown85.3882.8133.0
SPD2078448CompleteK11069COG0687FirmicutesStreptococcus89.7787.9231.13
SPD3192649Lack 3'-endK11069COG0687unknownunknown82.46100.030.04
SPD2078071CompleteK11069COG0687FirmicutesLactobacillus95.6195.2430.17
SPD2036399Lack both endsK11069COG0687unknownunknown88.8985.3231.95
SPD2655709Lack 5'-endK11069COG0687ProteobacteriaHaemophilus86.2696.4632.14
SPD2075793CompleteK11069COG0687FirmicutesLactobacillus88.385.1532.06
SPD2046019CompleteK11069COG0687unknownunknown92.9888.331.4
SPD2493130Lack 5'-endK11069COG0687unknownunknown81.5884.5231.79
SPD2020704CompleteK11069COG0687unknownunknown88.8987.8531.99
SPD2053279CompleteK11069COG0687FirmicutesAnaerococcus90.3587.1930.09
SPD2065194CompleteK11069COG0687unknownunknown92.487.4330.56
SPD3382958Lack both endsK11069COG0687unknownunknown73.3992.8633.99
SPD2147623CompleteK11069COG0687Firmicutesunknown98.5498.030.0
SPD1931750CompleteK11069COG0687unknownunknown85.6778.9230.17
SPD2053830CompleteK11069COG0687unknownunknown92.1186.3531.08
SPD2078066CompleteK11069COG0687FirmicutesStreptococcus81.5876.7530.47
SPD2076655CompleteK11069COG0687FirmicutesLactobacillus95.6195.2430.17
SPD2085126CompleteK11069COG0687FirmicutesStreptococcus85.0983.4331.48
SPD2002172CompleteK11069COG0687unknownunknown95.0390.6631.1
SPD1966413Lack 5'-endK11069COG0687unknownunknown88.0182.5630.84
SPD2074299CompleteK11069COG0687FirmicutesLactobacillus95.6195.2430.09
SPD2078091CompleteK11069COG0687FirmicutesLactobacillus91.8188.5230.65
SPD3460593Lack both endsK11069COG0687unknownunknown76.0297.7132.44
SPD3099694Lack 3'-endK11069COG0687unknownunknown81.87100.032.41
SPD2078089CompleteK11069COG0687FirmicutesLactobacillus84.579.5530.24
SPD2053542CompleteK11069COG0687unknownunknown87.7284.1231.29
SPD2626143Lack 5'-endK11069COG0687Firmicutesunknown76.6182.7531.44
SPD2703433Lack 5'-endK11069COG0687Firmicutesunknown81.5887.6630.88
SPD2149916CompleteK11069COG0687unknownunknown80.777.4330.43
SPD2083317CompleteK11069COG0687unknownunknown88.8987.6430.28
SPD3705537Lack both endsK11069COG0687unknownunknown72.5197.5933.06
SPD2059222CompleteK11069COG0687unknownunknown81.2980.1733.89
SPD2206317CompleteK11069COG0687unknownunknown79.8280.030.96
SPD2159979Lack 3'-endK11069COG0687unknownunknown86.8482.8631.15
SPD1998202CompleteK11069COG0687unknownunknown78.9572.5333.95
SPD2093652CompleteK11069COG0687FirmicutesRoseburia85.0982.8231.65
SPD2010158Lack 5'-endK11069COG0687FirmicutesRoseburia83.6378.7931.14
SPD1882709CompleteK11069COG0687unknownunknown81.2973.3330.14
SPD2409834Lack 3'-endK11069COG0687unknownunknown78.0781.2131.02
SPD1895756CompleteK11069COG0687FirmicutesRoseburia85.0978.6131.99
SPD1655324CompleteK11069COG0687unknownunknown84.573.3730.0
SPD2654008Lack 5'-endK11069COG0687unknownunknown75.1581.6734.35
SPD2486064Lack 3'-endK11069COG0687unknownunknown78.0782.7231.02
SPD1937133CompleteK11069COG0687unknownunknown80.4173.7831.56
SPD1643412CompleteK11069COG0687unknownunknown82.7574.4431.79
SPD2192703CompleteK11069COG0687unknownunknown83.0480.9230.18
SPD2060213CompleteK11069COG0687unknownunknown99.7198.3230.58
SPD2040611Lack 5'-endK11069COG0687FirmicutesRoseburia82.7580.2830.03
SPD1642890CompleteK11069COG0687unknownunknown82.7574.4431.13
SPD2060936CompleteK11069COG0687Firmicutesunknown92.1188.8331.08
SPD2158043CompleteK11069COG0687unknownunknown86.8483.0930.16
SPD2135355Lack 5'-endK11069COG0687Firmicutesunknown92.1190.631.08
SPD2076725CompleteK11069COG0687unknownunknown81.5877.0330.77
SPD3472119Lack both endsK11069COG0687unknownunknown76.6199.6231.7
SPD2152338CompleteK11069COG0687FirmicutesCoprobacillus81.2980.2930.31
SPD2498068Lack both endsK11069COG0687unknownunknown78.3682.0430.0
SPD1895477Lack 5'-endK11069COG0687Firmicutesunknown82.1675.1330.21
SPD2053407CompleteK11069COG0687unknownunknown83.6378.8330.95
SPD2211127CompleteK11069COG0687Firmicutesunknown79.2480.2930.5
SPD2742530Lack 3'-endK11069COG0687unknownunknown83.6392.4830.1
SPD1942517CompleteK11069COG0687unknownunknown87.1386.1831.08
SPD1902026Lack 5'-endK11069COG0687Firmicutesunknown82.1675.3430.21
SPD1911393CompleteK11069COG0687unknownunknown79.8272.5830.69
SPD3003259Lack 3'-endK11069COG0687Firmicutesunknown72.8184.4832.54
SPD2100594CompleteK11069COG0687unknownunknown81.2980.2331.42
SPD2428345Lack 5'-endK11069COG0687unknownunknown80.4183.2330.11
SPD2140830Lack 5'-endK11069COG0687unknownunknown85.6784.0530.36
SPD2076929CompleteK11069COG0687unknownunknown87.4386.5530.5
SPD2052163CompleteK11069COG0687unknownunknown82.7577.9930.31
SPD1874140CompleteK11069COG0687Firmicutesunknown79.8271.2830.43
SPD2083264CompleteK11069COG0687unknownunknown78.9576.1230.71
SPD1902591CompleteK11069COG0687Firmicutesunknown77.1970.7830.0
SPD2073603CompleteK11069COG0687unknownunknown79.8275.6330.8
SPD1906962CompleteK11069COG0687unknownunknown82.1674.5330.07
SPD2045534CompleteK11069COG0687FirmicutesHoldemania76.0271.6730.34
SPD1923589Lack 5'-endK11069COG0687FirmicutesFaecalibacterium78.0772.2430.04
SPD1907268CompleteK11069COG0687Firmicutesunknown77.1971.0531.25
SPD2158659CompleteK11069COG0687unknownunknown80.4177.6530.11
SPD2002240Lack 3'-endK11069COG0687Firmicutesunknown82.7575.3430.07
SPD2140643CompleteK11069COG0687unknownunknown77.4976.3531.64
SPD1955740CompleteK11069COG0687unknownunknown79.8273.3730.66
SPD1957769CompleteK11069COG0687unknownunknown79.8273.3730.22
SPD2127526CompleteK11069COG0687unknownunknown87.4386.6530.65
SPD2152556Lack 3'-endK11069COG0687unknownunknown79.8276.9230.31
SPD2016934Lack 3'-endK11069COG0687unknownunknown79.5375.2130.71
SPD2049129CompleteK11069COG0687unknownunknown77.1972.1430.8
SPD2180986Lack 5'-endK11069COG0687unknownunknown80.4178.6730.71
SPD2884258Lack both endsK11069COG0687unknownunknown74.2784.8530.53
SPD1974617CompleteK11069COG0687unknownunknown79.8274.8630.36
SPD1938180CompleteK11069COG0687unknownunknown79.8272.9730.94
SPD1936460CompleteK11069COG0687unknownunknown79.8272.9730.58
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.4948.38e-1163.96e-113
orderEnterobacteriales0.4821.34e-1092.11e-107
familyEnterobacteriaceae0.4821.34e-1092.11e-107
phylumProteobacteria0.4484e-934.72e-91
genusEscherichia0.4352.44e-872.3e-85
speciesEscherichia_coli0.4242.74e-822.16e-80
genusPantoea0.3581.63e-579.62e-56
speciesPantoea_unclassified0.3581.63e-579.62e-56
speciesRuminococcus_gnavus0.339.97e-495.23e-47
genusClostridium0.3253.24e-471.53e-45
familyClostridiaceae0.3246.13e-472.63e-45
genusKlebsiella0.3222.28e-468.97e-45
speciesClostridium_bolteae0.3122.29e-438.31e-42
speciesKlebsiella_pneumoniae0.3065.78e-421.95e-40
speciesCoprobacillus_unclassified0.3042.34e-417.36e-40
classBacilli0.3034.92e-411.45e-39
orderLactobacillales0.3029.34e-412.59e-39
familyStreptococcaceae0.2981.07e-392.81e-38
genusCoprobacillus0.2972.34e-395.81e-38
genusStreptococcus0.2911.05e-372.48e-36
speciesClostridium_ramosum0.2845.52e-361.24e-34
familyFusobacteriaceae0.284.95e-351.06e-33
genusFusobacterium0.2772.92e-345.99e-33
speciesEscherichia_unclassified0.2765.4e-341.06e-32
genusBlautia0.2741.18e-332.23e-32
phylumFusobacteria0.2732.12e-333.57e-32
classFusobacteriia0.2732.12e-333.57e-32
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speciesLactococcus_phage_phi70.0340.1410.175
speciesParabacteroides_johnsonii-0.0330.1490.184
familySuccinivibrionaceae-0.0330.150.184
speciesAcidaminococcus_intestini0.0330.150.184
speciesCoriobacteriaceae_bacterium_phI0.0330.1530.188
speciesBacteroides_faecis-0.0330.1550.19
speciesBacteroides_sp_1_1_6-0.0330.1560.19
speciesBifidobacterium_catenulatum-0.0330.1580.192
genusSiphoviridae_noname0.0320.1640.199
speciesRuminococcus_sp_JC3040.0310.1740.211
genusClostridiaceae_noname0.0310.1760.212
speciesClostridiaceae_bacterium_JC1180.0310.1760.212
genusPrevotella-0.0310.1840.221
orderViruses_noname0.030.1920.23
genusTunalikevirus0.030.1960.234
speciesOscillibacter_sp_KLE_1745-0.030.20.238
orderAeromonadales0.0270.2380.283
speciesErysipelotrichaceae_bacterium_21_30.0270.2390.283
speciesBacteroides_thetaiotaomicron0.0270.2440.289
speciesBacteroides_coprophilus-0.0260.2530.299
speciesEubacterium_ventriosum-0.0260.2540.299
speciesClostridium_sp_KLE_17550.0260.2680.315
speciesLactococcus_lactis0.0250.2740.321
speciesEubacterium_sp_3_1_310.0250.2780.325
speciesBacteroides_finegoldii-0.0250.2840.331
speciesAlistipes_unclassified-0.0250.2880.335
speciesPrevotella_copri-0.0240.2950.342
speciesBacteroides_fluxus-0.0240.2990.346
speciesRoseburia_intestinalis0.0230.3260.376
familyStaphylococcaceae0.0230.3290.378
speciesAcidaminococcus_fermentans0.0230.3290.378
speciesOdoribacter_laneus0.0220.3420.392
speciesCollinsella_intestinalis0.0220.3430.392
phylumViruses_noname0.0210.3580.407
classViruses_noname0.0210.3580.407
speciesParabacteroides_goldsteinii-0.0210.360.408
speciesKlebsiella_phage_KP360.0210.370.419
speciesAcidaminococcus_unclassified0.0210.3750.423
speciesHoldemania_filiformis0.020.3780.426
orderPseudomonadales0.020.3870.435
speciesBacteroides_salanitronis-0.020.3950.443
speciesPrevotella_stercorea-0.0190.4120.461
genusDorea0.0190.4130.461
speciesStreptococcus_phage_Sfi210.0180.4290.478
speciesBacteroides_ovatus-0.0180.4330.481
speciesLactobacillus_reuteri0.0180.4340.481
classClostridia0.0170.4520.498
orderClostridiales0.0170.4520.498
speciesParabacteroides_sp_20_3-0.0170.4580.504
speciesTuricibacter_sanguinis0.0170.4630.508
genusAdlercreutzia-0.0160.4790.523
speciesAdlercreutzia_equolifaciens-0.0160.4790.523
speciesHoldemania_unclassified-0.0160.4910.535
speciesLactococcus_phage_P6800.0160.4950.538
speciesBacteroides_caccae-0.0150.5150.559
speciesTuricibacter_unclassified-0.0150.5250.568
speciesLactobacillus_casei_paracasei0.0140.5360.578
speciesBacteroides_sp_2_1_22-0.0140.5360.578
speciesParabacteroides_distasonis-0.0140.5560.598
genusStaphylococcus0.0140.5570.598
speciesBacteroides_intestinalis0.0120.6050.646
speciesBacteroides_eggerthii-0.0120.6050.646
speciesLactococcus_phage_bIL67-0.0120.6120.652
speciesBifidobacterium_bifidum0.0120.6140.653
speciesBacteroides_stercoris0.0120.6180.655
speciesPeptostreptococcaceae_noname_unclassified0.010.6530.691
genusSlackia0.010.6550.692
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.010.6610.696
speciesBacteroides_nordii0.010.6770.712
speciesCollinsella_unclassified0.0090.6920.726
speciesCoprobacillus_sp_29_10.0080.7190.752
speciesLactococcus_phage_936_sensu_lato0.0080.7270.759
speciesSlackia_piriformis-0.0080.7390.77
genusTuricibacter-0.0080.7440.773
speciesBacteroides_salyersiae-0.0070.7560.784
speciesBacteroides_coprocola0.0050.8160.845
speciesRuminococcus_bromii-0.0050.8210.848
speciesBacteroides_xylanisolvens-0.0050.8290.854
speciesLactobacillus_acidophilus0.0050.8420.866
speciesBacteroides_clarus-0.0050.8440.866
speciesClostridium_spiroforme-0.0040.8690.89
familyPodoviridae0.0030.8970.916
genusPorphyromonas0.0030.9060.924
speciesPorphyromonas_asaccharolytica-0.0030.9130.929
genusPropionibacterium-0.0020.9170.931
orderCaudovirales0.0020.9480.957
speciesClostridium_sp_L2_50-0.0020.9480.957
speciesPropionibacterium_freudenreichii-0.0010.9490.957
speciesBacteroides_plebeius0.0010.9630.969
speciesBacteroides_sp_4_3_47FAA-0.0010.9660.97
speciesMegamonas_funiformis0.00.9830.985
speciesBifidobacterium_animalis0.00.9940.994
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.1673038685160.08588266313351.61233496137e-0628289.49981
Type II diabetesChina1831850.1523680707160.1231411182440.0097293508778367112.1319
Crohns diseaseSpain17660.1484578634920.08246475607720.04519117092311120137.2436
Type II diabetesDenmark752770.09035273123520.07916474985020.0948958398206946931.0388
Type II diabetesSweden53920.1104681497260.1023920882550.1607966229565819.1602
Colorectal cancerAustria64350.1708997888120.1023227301260.217466201095947132.0443
ObesityDenmark1691230.08199383140280.08819370533450.2800758780951363944.8489
Rheumatoid arthritisChina127980.1166495103240.119354403630.4355559291551582552.7729
Ulcerative colitisSpain78660.07574742102570.08246475607720.4532971215881802459.4577
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382