MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-27 16:08:44 PST
Job id & description: 2232, reduc phen
Query type: protein
Count queries & homologs: 1, 66
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
NADPH-dependent4666783CompleteK00540COG0431FirmicutesStreptococcus97.5598.0260.8
NADPH-dependent4685776CompleteK00540COG0431FirmicutesStreptococcus97.5598.0260.3
NADPH-dependent4740148CompleteK00540COG0431FirmicutesStreptococcus96.5798.060.91
NADPH-dependent4691162CompleteK00540COG0431FirmicutesStreptococcus97.5598.0260.3
NADPH-dependent4752873CompleteK00540COG0431FirmicutesStreptococcus96.5798.4959.9
NADPH-dependent4642430CompleteK00540COG0431FirmicutesGranulicatella96.5797.0655.56
NADPH-dependent4708713CompleteK00540COG0431FirmicutesStreptococcus97.5599.057.5
NADPH-dependent4740151CompleteK00540COG0431FirmicutesStreptococcus98.04100.057.21
NADPH-dependent4681659CompleteK00540COG0431FirmicutesStreptococcus98.0499.555.22
NADPH-dependent4715711CompleteK00540COG0431FirmicutesStreptococcus98.0499.555.22
NADPH-dependent4687438CompleteK00540COG0431unknownunknown98.04100.052.97
NADPH-dependent4330229CompleteK00540COG0431FirmicutesStreptococcus98.0492.1756.22
NADPH-dependent3938893CompleteK00540COG0431FirmicutesStreptococcus98.0484.7555.22
NADPH-dependent4319728CompleteK00540COG0431FirmicutesStreptococcus98.0492.1755.72
NADPH-dependent4690874CompleteK00540COG0431ActinobacteriaAtopobium98.0499.554.23
NADPH-dependent4659650CompleteK00540COG0431unknownunknown98.0499.0153.23
NADPH-dependent4715915CompleteK00540COG0431FirmicutesStreptococcus98.0499.555.72
NADPH-dependent4711159CompleteK00540COG0431FirmicutesStreptococcus98.0499.554.73
NADPH-dependent4717573CompleteK00540COG0431FirmicutesStreptococcus98.04100.054.23
NADPH-dependent4453581CompleteK00540COG0431FirmicutesStreptococcus98.0494.3454.23
NADPH-dependent4715932CompleteK00540COG0431FirmicutesStreptococcus98.0499.554.73
NADPH-dependent4740290CompleteK00540COG0431FirmicutesStreptococcus98.04100.054.73
NADPH-dependent4715926CompleteK00540COG0431FirmicutesStreptococcus97.5599.055.0
NADPH-dependent4678539CompleteK00540COG0431FirmicutesEnterococcus97.5599.0151.5
NADPH-dependent5377253CompleteK00540COG0431FirmicutesStreptococcus86.7699.4459.89
NADPH-dependent5018733CompleteK00540COG0431unknownunknown86.2793.1257.95
NADPH-dependent4704674CompleteK00100COG0431FirmicutesLactobacillus96.0898.0152.79
NADPH-dependent4713072CompleteK00100COG0431FirmicutesLactobacillus96.0898.0152.79
NADPH-dependent4690829CompleteK00100COG0431FirmicutesLactobacillus97.0698.5152.76
NADPH-dependent4562045CompleteK00100COG0431unknownunknown90.289.3751.89
NADPH-dependent4663181CompleteK00100COG0431FirmicutesLactobacillus88.7389.1651.93
NADPH-dependent4682099CompleteK00100COG0431unknownunknown86.7687.6249.15
NADPH-dependent3261571CompleteK00540COG0431unknownunknown99.0273.6349.01
NADPH-dependent5910124Lack 3'-endK00244COG0431unknownunknown75.4996.8646.75
NADPH-dependent4781763CompleteK00244COG0431unknownunknown84.3185.3543.02
NADPH-dependent5158571CompleteK00244COG0431FirmicutesLactobacillus88.73100.044.44
NADPH-dependent4661686CompleteK00540COG0431unknownunknown87.7588.1842.86
NADPH-dependent5274859CompleteK00244COG0431FirmicutesLactobacillus84.3193.8943.93
NADPH-dependent5157786CompleteK00244COG0431FirmicutesLactobacillus88.73100.042.86
NADPH-dependent5220510CompleteK00244COG0431FirmicutesLactobacillus88.73100.044.92
NADPH-dependent5216889CompleteK00244COG0431FirmicutesLactobacillus88.73100.044.02
NADPH-dependent4782124CompleteK00244COG0431FirmicutesLactobacillus89.7193.9439.25
NADPH-dependent5340247CompleteK00100COG0431FirmicutesLactobacillus85.7896.6341.71
NADPH-dependent4905233CompleteK00244COG0431FirmicutesLactobacillus89.7194.337.7
NADPH-dependent5214080CompleteK00244COG0431FirmicutesLactobacillus88.73100.042.25
NADPH-dependent5306248CompleteK00244COG0431FirmicutesLactobacillus83.8294.4140.94
NADPH-dependent5220773CompleteK00244COG0431FirmicutesLactobacillus88.73100.041.18
NADPH-dependent5227483CompleteK00244COG0431FirmicutesLactobacillus88.73100.041.18
NADPH-dependent4974812CompleteK00244COG0431FirmicutesLactobacillus89.7195.8138.25
NADPH-dependent5307665CompleteK00540COG0431FirmicutesWeissella86.2797.7737.85
NADPH-dependent5310179CompleteK00100COG0431FirmicutesLactobacillus85.7896.6537.71
NADPH-dependent5317841CompleteK00540COG0431unknownunknown86.2798.3138.42
NADPH-dependent5310461CompleteK00100COG0431FirmicutesLactobacillus85.7896.6536.0
NADPH-dependent5303212CompleteK00100COG0431FirmicutesLactobacillus85.7896.6535.43
NADPH-dependent5317323CompleteK00100COG0431FirmicutesLactobacillus85.7896.6535.43
NADPH-dependent5169584CompleteK00100COG0431FirmicutesAnaerofustis87.2597.2832.26
NADPH-dependent5217427CompleteK00355COG0431ProteobacteriaDesulfovibrio76.9684.6234.59
NADPH-dependent5056068CompleteK00540COG0431Proteobacteriaunknown86.2795.2134.81
NADPH-dependent5419390CompleteK00100COG0431unknownunknown80.3995.4331.98
NADPH-dependent5147131CompleteK00355COG0431unknownunknown77.9485.8732.3
NADPH-dependent5035230CompleteK00540COG0431ProteobacteriaKlebsiella71.5780.3236.6
NADPH-dependent5150921CompleteK00100COG0431unknownunknown86.2798.3732.62
NADPH-dependent5072811CompleteK00100COG0431FirmicutesClostridium86.7695.1930.39
NADPH-dependent5078808CompleteK00100COG0431ActinobacteriaEggerthella86.7697.8631.38
NADPH-dependent5132752CompleteK00540COG0431ProteobacteriaProvidencia82.3591.8930.86
NADPH-dependent5221820CompleteK00355COG0431unknownunknown76.4784.6234.81
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classBacilli0.8140.00.0
orderLactobacillales0.8160.00.0
familyStreptococcaceae0.8160.00.0
genusStreptococcus0.8190.00.0
speciesStreptococcus_salivarius0.721.45e-2981.37e-296
speciesStreptococcus_parasanguinis0.6298.83e-2076.95e-205
speciesStreptococcus_anginosus0.5115.55e-1253.74e-123
speciesStreptococcus_vestibularis0.5091.09e-1236.43e-122
speciesStreptococcus_sanguinis0.5062.9e-1221.52e-120
speciesStreptococcus_gordonii0.4981.41e-1176.66e-116
orderActinomycetales0.4913.49e-1141.5e-112
familyLactobacillaceae0.4861.62e-1116.37e-110
genusLactobacillus0.4816.24e-1092.27e-107
speciesStreptococcus_mitis_oralis_pneumoniae0.4614.29e-991.45e-97
familyMicrococcaceae0.4581.44e-974.53e-96
genusRothia0.4581.63e-974.81e-96
speciesRothia_mucilaginosa0.4416.99e-901.94e-88
genusActinomyces0.443.14e-898.23e-88
familyActinomycetaceae0.4381.55e-883.85e-87
familyBacillales_noname0.4382.25e-885.06e-87
genusGemella0.4382.25e-885.06e-87
speciesBifidobacterium_dentium0.4291.86e-843.99e-83
orderBacillales0.4221.94e-813.98e-80
genusVeillonella0.4092.68e-765.27e-75
genusBlautia0.3963.86e-717.29e-70
speciesStreptococcus_australis0.3964.42e-718.02e-70
speciesStreptococcus_mutans0.3912.39e-694.18e-68
speciesVeillonella_parvula0.3876.21e-681.05e-66
genusEggerthella0.3773.54e-645.59e-63
phylumBacteroidetes-0.3773.73e-645.59e-63
classBacteroidia-0.3773.79e-645.59e-63
orderBacteroidales-0.3773.79e-645.59e-63
speciesEggerthella_unclassified0.3716.09e-628.71e-61
speciesVeillonella_atypica0.3662.77e-603.85e-59
speciesLactobacillus_salivarius0.3654.15e-605.6e-59
speciesVeillonella_dispar0.3624.15e-595.44e-58
speciesVeillonella_unclassified0.3595.48e-586.99e-57
speciesCoprobacillus_unclassified0.3551.21e-561.5e-55
genusCoprobacillus0.3534.04e-564.89e-55
speciesLactobacillus_gasseri0.3474.09e-544.83e-53
speciesRuminococcus_gnavus0.3461.17e-531.35e-52
genusOdoribacter-0.3421.56e-521.75e-51
phylumActinobacteria0.3413.18e-523.41e-51
classActinobacteria0.3413.18e-523.41e-51
speciesLactobacillus_fermentum0.3414.58e-524.8e-51
speciesMegasphaera_micronuciformis0.3392.2e-512.26e-50
speciesLactobacillus_mucosae0.3376.69e-516.69e-50
speciesClostridium_ramosum0.3376.8e-516.69e-50
speciesOdoribacter_splanchnicus-0.3352.9e-502.79e-49
speciesStreptococcus_thermophilus0.331.19e-481.12e-47
genusSolobacterium0.3261.43e-471.3e-46
speciesSolobacterium_moorei0.3261.43e-471.3e-46
familyRikenellaceae-0.3215.64e-464.93e-45
genusAlistipes-0.3215.64e-464.93e-45
familyPorphyromonadaceae-0.3176.57e-455.64e-44
familyEnterococcaceae0.3176.87e-455.79e-44
genusEnterococcus0.3161.27e-441.05e-43
speciesAlistipes_shahii-0.3091.14e-429.28e-42
speciesFusobacterium_nucleatum0.3011.48e-401.18e-39
speciesEggerthella_lenta0.3011.63e-401.28e-39
orderBifidobacteriales0.2981.14e-398.68e-39
familyBifidobacteriaceae0.2981.14e-398.68e-39
classGammaproteobacteria0.2959.63e-397.21e-38
genusBifidobacterium0.2932.9e-382.14e-37
speciesLactobacillus_delbrueckii0.2871.08e-367.84e-36
familyPeptostreptococcaceae0.2861.65e-361.18e-35
genusPeptostreptococcus0.2642.84e-312e-30
genusAnaerostipes0.2628.32e-315.78e-30
genusPeptostreptococcaceae_noname0.2621.04e-307.11e-30
speciesCampylobacter_concisus0.2621.14e-307.69e-30
genusParabacteroides-0.2611.31e-308.71e-30
speciesAlistipes_senegalensis-0.2611.47e-309.64e-30
speciesErysipelotrichaceae_bacterium_2_2_44A0.262.24e-301.45e-29
speciesClostridium_bartlettii0.2562.26e-291.44e-28
speciesLactobacillus_vaginalis0.2554.19e-292.64e-28
orderEnterobacteriales0.2512.63e-281.61e-27
familyEnterobacteriaceae0.2512.63e-281.61e-27
orderCoriobacteriales0.254.49e-282.68e-27
familyCoriobacteriaceae0.254.49e-282.68e-27
speciesLachnospiraceae_bacterium_5_1_63FAA0.254.81e-282.84e-27
speciesBifidobacterium_longum0.255.03e-282.93e-27
speciesAlistipes_putredinis-0.2481.04e-275.99e-27
familyOscillospiraceae-0.2472.3e-271.29e-26
genusOscillibacter-0.2472.3e-271.29e-26
familyBacteroidales_noname-0.2472.54e-271.38e-26
genusBacteroidales_noname-0.2472.54e-271.38e-26
speciesBacteroidales_bacterium_ph8-0.2472.54e-271.38e-26
speciesOscillibacter_unclassified-0.2463.93e-272.11e-26
speciesLactobacillus_oris0.2457.28e-273.86e-26
speciesClostridium_symbiosum0.2422.26e-261.19e-25
genusAggregatibacter0.2413.36e-261.74e-25
phylumFirmicutes0.2391e-255.13e-25
speciesBlautia_producta0.2364.02e-252.04e-24
phylumFusobacteria0.2365.56e-252.73e-24
classFusobacteriia0.2365.56e-252.73e-24
orderFusobacteriales0.2365.56e-252.73e-24
genusLachnospiraceae_noname0.2356.49e-253.16e-24
speciesAlistipes_finegoldii-0.2331.5e-247.22e-24
familyFusobacteriaceae0.2322.33e-241.11e-23
orderBurkholderiales-0.2323.05e-241.44e-23
genusFusobacterium0.2323.12e-241.46e-23
speciesLactobacillus_casei_paracasei0.2313.78e-241.75e-23
speciesRuminococcus_sp_5_1_39BFAA0.238.21e-243.76e-23
speciesLactobacillus_crispatus0.238.51e-243.86e-23
speciesEnterococcus_faecalis0.2299.98e-244.49e-23
speciesLactobacillus_rhamnosus0.2281.55e-236.9e-23
speciesPrevotella_buccae0.2281.89e-238.34e-23
speciesClostridium_bolteae0.2241.04e-224.55e-22
speciesClostridium_perfringens0.2241.14e-224.94e-22
familyLeuconostocaceae0.2241.18e-225.06e-22
speciesBacteroides_uniformis-0.2241.33e-225.66e-22
genusEscherichia0.2231.55e-226.53e-22
classBetaproteobacteria-0.2231.82e-227.6e-22
speciesAggregatibacter_segnis0.226.27e-222.6e-21
speciesEnterococcus_faecium0.2191.06e-214.35e-21
familySutterellaceae-0.2191.1e-214.48e-21
speciesClostridium_nexile0.2172.21e-218.92e-21
familyClostridiaceae0.2172.71e-211.08e-20
genusActinobacillus0.2172.75e-211.08e-20
speciesActinobacillus_unclassified0.2172.75e-211.08e-20
genusClostridium0.2163.05e-211.19e-20
speciesAlistipes_indistinctus-0.2155e-211.93e-20
orderPasteurellales0.2156.21e-212.36e-20
familyPasteurellaceae0.2156.21e-212.36e-20
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2156.66e-212.51e-20
speciesAnaerotruncus_unclassified-0.2147.49e-212.81e-20
speciesRuminococcus_obeum0.2147.61e-212.83e-20
speciesHaemophilus_parainfluenzae0.2149.78e-213.61e-20
genusHaemophilus0.2131.28e-204.68e-20
speciesEscherichia_coli0.2121.92e-206.97e-20
speciesClostridium_hathewayi0.2097.35e-202.65e-19
speciesLachnospiraceae_bacterium_2_1_58FAA0.2071.56e-195.58e-19
speciesRuminococcus_torques0.2071.85e-196.57e-19
speciesParabacteroides_merdae-0.2053.04e-191.07e-18
familyBacteroidaceae-0.2021.36e-184.72e-18
genusBacteroides-0.2021.36e-184.72e-18
speciesPeptostreptococcus_stomatis0.2011.53e-185.27e-18
genusKlebsiella0.22.51e-188.58e-18
genusBarnesiella-0.1985.61e-181.89e-17
speciesBarnesiella_intestinihominis-0.1985.61e-181.89e-17
speciesEubacterium_siraeum-0.1951.73e-175.79e-17
familyLachnospiraceae0.1942.93e-179.74e-17
speciesLachnospiraceae_bacterium_5_1_57FAA0.1934.22e-171.39e-16
speciesSubdoligranulum_unclassified-0.1924.84e-171.59e-16
familyVeillonellaceae0.1917.56e-172.46e-16
genusLeuconostoc0.1891.8e-165.82e-16
speciesKlebsiella_oxytoca0.1891.89e-166.07e-16
genusCampylobacter0.1873.52e-161.12e-15
familyCampylobacteraceae0.1866.12e-161.94e-15
speciesAlistipes_onderdonkii-0.1856.48e-162.04e-15
genusOxalobacter-0.1857.3e-162.27e-15
speciesOxalobacter_formigenes-0.1857.3e-162.27e-15
genusSubdoligranulum-0.1841.25e-153.86e-15
classErysipelotrichia0.1831.4e-154.24e-15
orderErysipelotrichales0.1831.4e-154.24e-15
familyErysipelotrichaceae0.1831.4e-154.24e-15
speciesGemella_morbillorum0.1822.27e-156.82e-15
classDeltaproteobacteria-0.1822.32e-156.84e-15
orderDesulfovibrionales-0.1822.32e-156.84e-15
familyDesulfovibrionaceae-0.1822.32e-156.84e-15
speciesClostridiales_bacterium_1_7_47FAA0.1813.06e-158.97e-15
familyOxalobacteraceae-0.183.8e-151.11e-14
speciesErysipelotrichaceae_bacterium_6_1_450.184.02e-151.16e-14
speciesStreptococcus_infantarius0.184.23e-151.22e-14
speciesLachnospiraceae_bacterium_1_4_56FAA0.185.07e-151.45e-14
classEpsilonproteobacteria0.1795.64e-151.59e-14
orderCampylobacterales0.1795.64e-151.59e-14
speciesEubacterium_hallii0.1797.45e-152.09e-14
speciesBifidobacterium_breve0.1788.93e-152.49e-14
genusCoprobacter-0.1761.78e-144.91e-14
speciesCoprobacter_fastidiosus-0.1761.78e-144.91e-14
familyClostridiales_Family_XI_Incertae_Sedis0.1761.82e-144.99e-14
speciesDesulfovibrio_piger-0.1743.46e-149.44e-14
speciesAnaerostipes_unclassified0.1743.81e-141.03e-13
speciesAnaerostipes_hadrus0.1726.79e-141.83e-13
genusDesulfovibrio-0.1719.12e-142.45e-13
speciesHaemophilus_sputorum0.1719.45e-142.52e-13
genusLactococcus0.171.6e-134.24e-13
genusWeissella0.1691.62e-134.27e-13
speciesRoseburia_hominis-0.1692.14e-135.61e-13
speciesParaprevotella_xylaniphila-0.1682.34e-136.1e-13
genusMegasphaera0.1682.93e-137.6e-13
speciesStreptococcus_lutetiensis0.1674.24e-131.09e-12
speciesDorea_formicigenerans0.1664.31e-131.11e-12
speciesWeissella_cibaria0.1665.45e-131.39e-12
genusAnaerotruncus-0.1631.21e-123.07e-12
speciesBacteroides_vulgatus-0.1631.35e-123.41e-12
speciesBifidobacterium_animalis0.1621.75e-124.39e-12
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1612.21e-125.52e-12
speciesKlebsiella_pneumoniae0.163.35e-128.32e-12
genusRuminococcus0.1594.41e-121.09e-11
speciesLactococcus_lactis0.1586.17e-121.52e-11
genusDorea0.1586.23e-121.52e-11
speciesWeissella_confusa0.1579.7e-122.36e-11
genusErysipelotrichaceae_noname0.1579.94e-122.41e-11
speciesLactobacillus_plantarum0.1561.27e-113.06e-11
genusGordonibacter0.1551.58e-113.77e-11
speciesGordonibacter_pamelaeae0.1551.58e-113.77e-11
genusPseudoflavonifractor-0.1551.65e-113.89e-11
speciesPseudoflavonifractor_capillosus-0.1551.65e-113.89e-11
speciesClostridium_clostridioforme0.1551.84e-114.32e-11
speciesLactobacillus_amylovorus0.1542.22e-115.19e-11
speciesParvimonas_unclassified0.1523.78e-118.79e-11
genusParvimonas0.1523.83e-118.86e-11
genusButyrivibrio-0.1524.22e-119.72e-11
genusPantoea0.156.65e-111.52e-10
speciesPantoea_unclassified0.156.65e-111.52e-10
speciesBifidobacterium_pseudocatenulatum0.1462.51e-105.7e-10
genusEnterobacter0.1426.37e-101.44e-09
speciesParaprevotella_unclassified-0.1427.52e-101.69e-09
genusParaprevotella-0.1418.25e-101.85e-09
speciesSutterella_wadsworthensis-0.1411.01e-092.25e-09
genusParasutterella-0.1391.42e-093.13e-09
speciesParasutterella_excrementihominis-0.1391.42e-093.13e-09
speciesHaemophilus_paraphrohaemolyticus0.1372.93e-096.43e-09
speciesParaprevotella_clara-0.1363.27e-097.15e-09
speciesCitrobacter_unclassified0.1363.45e-097.5e-09
genusCitrobacter0.1363.66e-097.92e-09
speciesEnterobacter_cloacae0.1346.36e-091.37e-08
genusSutterella-0.1337.19e-091.54e-08
genusPropionibacterium0.1337.35e-091.57e-08
phylumProteobacteria0.1328.89e-091.89e-08
genusClostridiales_noname0.1329.47e-092e-08
speciesLachnospiraceae_bacterium_6_1_63FAA0.1329.7e-092.04e-08
speciesBacteroides_cellulosilyticus-0.1329.88e-092.07e-08
speciesEubacterium_limosum0.1321.08e-082.26e-08
genusBilophila-0.1311.17e-082.41e-08
speciesPropionibacterium_freudenreichii0.1311.17e-082.41e-08
speciesBilophila_unclassified-0.1311.17e-082.41e-08
speciesCitrobacter_freundii0.131.59e-083.26e-08
speciesCoprococcus_sp_ART55_1-0.1292.14e-084.37e-08
speciesEscherichia_unclassified0.1292.44e-084.96e-08
speciesErysipelotrichaceae_bacterium_21_30.1282.8e-085.67e-08
speciesFusobacterium_mortiferum0.1264.64e-089.36e-08
speciesErysipelotrichaceae_bacterium_3_1_530.1265.08e-081.02e-07
speciesEggerthella_sp_1_3_56FAA0.1265.17e-081.03e-07
familyPrevotellaceae-0.1255.22e-081.04e-07
speciesLactobacillus_reuteri0.1246.98e-081.38e-07
genusButyricimonas-0.1231.04e-072.05e-07
speciesButyricimonas_synergistica-0.1231.04e-072.05e-07
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1211.43e-072.8e-07
speciesBifidobacterium_bifidum0.1211.48e-072.89e-07
speciesBlautia_hydrogenotrophica0.1192.47e-074.8e-07
speciesLactococcus_garvieae0.1192.75e-075.32e-07
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speciesBacteroides_caccae-0.1164.4e-078.41e-07
speciesBacteroides_xylanisolvens-0.1164.5e-078.56e-07
speciesDesulfovibrio_desulfuricans-0.1165.17e-079.8e-07
speciesKlebsiella_unclassified0.1146.9e-071.3e-06
phylumVerrucomicrobia-0.1147.54e-071.39e-06
classVerrucomicrobiae-0.1147.54e-071.39e-06
orderVerrucomicrobiales-0.1147.54e-071.39e-06
familyVerrucomicrobiaceae-0.1147.54e-071.39e-06
genusAkkermansia-0.1147.54e-071.39e-06
speciesAkkermansia_muciniphila-0.1147.54e-071.39e-06
familyBurkholderiales_noname-0.1148.04e-071.48e-06
speciesButyrivibrio_crossotus-0.1121.09e-061.99e-06
classNegativicutes0.1121.18e-062.14e-06
orderSelenomonadales0.1121.18e-062.14e-06
genusBurkholderiales_noname-0.1121.3e-062.34e-06
speciesBurkholderiales_bacterium_1_1_47-0.1121.3e-062.34e-06
genusRuminococcaceae_noname-0.112.01e-063.59e-06
speciesRuminococcaceae_bacterium_D16-0.112.01e-063.59e-06
genusProteus0.1082.68e-064.77e-06
speciesBilophila_wadsworthia-0.1082.83e-065.02e-06
speciesMitsuokella_unclassified-0.1054.9e-068.66e-06
speciesDialister_invisus0.1055.33e-069.39e-06
speciesTuricibacter_sanguinis0.1046.22e-061.09e-05
classMethanobacteria-0.1046.67e-061.16e-05
orderMethanobacteriales-0.1046.67e-061.16e-05
familyMethanobacteriaceae-0.1046.67e-061.16e-05
phylumEuryarchaeota-0.1046.87e-061.19e-05
speciesBacteroides_fragilis0.1047.03e-061.21e-05
speciesLachnospiraceae_bacterium_1_1_57FAA0.1029e-061.54e-05
speciesLactobacillus_acidophilus0.1029.12e-061.56e-05
genusMitsuokella-0.1029.4e-061.6e-05
speciesFusobacterium_varium0.1011.17e-051.99e-05
genusMorganella0.1011.34e-052.26e-05
speciesMorganella_morganii0.1011.34e-052.26e-05
speciesStreptococcus_pasteurianus0.11.55e-052.6e-05
genusPhascolarctobacterium-0.11.59e-052.65e-05
speciesPhascolarctobacterium_succinatutens-0.11.59e-052.65e-05
orderPseudomonadales0.0991.79e-052.97e-05
speciesFusobacterium_ulcerans0.0991.88e-053.11e-05
speciesClostridium_citroniae0.0982.04e-053.37e-05
familyPropionibacteriaceae0.0982.12e-053.49e-05
speciesBacteroides_dorei-0.0982.23e-053.65e-05
speciesMethanobrevibacter_smithii-0.0982.3e-053.76e-05
genusMethanobrevibacter-0.0972.61e-054.25e-05
speciesParabacteroides_distasonis-0.0972.76e-054.48e-05
familyAcidaminococcaceae-0.0963e-054.85e-05
speciesBacteroides_clarus-0.0963.45e-055.56e-05
speciesMethanobrevibacter_unclassified-0.0963.48e-055.59e-05
speciesEnterobacter_aerogenes0.0963.52e-055.63e-05
speciesMitsuokella_multacida-0.0954.2e-056.7e-05
speciesRuminococcus_champanellensis-0.0944.64e-057.37e-05
familyMyoviridae0.0944.82e-057.63e-05
speciesClostridium_sp_L2_50-0.0945.04e-057.96e-05
genusPeptoniphilus0.0935.68e-058.94e-05
speciesEubacterium_ventriosum-0.0935.91e-059.27e-05
speciesProteus_mirabilis0.0917.75e-050.000121
speciesAlistipes_sp_HGB5-0.099.13e-050.000142
speciesLeuconostoc_lactis0.099.45e-050.000147
speciesRuminococcus_sp_JC3040.099.6e-050.000149
speciesRoseburia_inulinivorans-0.099.63e-050.000149
genusRoseburia-0.0890.000110.000169
speciesBacteroides_ovatus-0.0870.0001520.000233
speciesAlistipes_sp_AP11-0.0850.0002290.00035
genusDialister0.0840.0002540.000387
speciesBifidobacterium_catenulatum0.0830.0003110.000472
familyStaphylococcaceae0.0830.0003130.000474
genusMegamonas0.0820.0003920.000591
speciesMegamonas_unclassified0.0820.00040.000601
speciesOscillibacter_sp_KLE_1728-0.0810.0004830.000724
genusAdlercreutzia0.0790.0005870.000874
speciesAdlercreutzia_equolifaciens0.0790.0005870.000874
genusStaphylococcus0.0790.0006490.000963
speciesBacteroides_intestinalis-0.0790.0006580.000974
speciesLactobacillus_ruminis-0.0780.0007160.00106
speciesStreptococcus_phage_Sfi210.0780.0007630.00112
speciesCoriobacteriaceae_bacterium_phI0.0760.0009790.00144
speciesParabacteroides_sp_D13-0.0760.001010.00148
speciesButyrivibrio_unclassified-0.0760.001030.0015
speciesEubacterium_rectale-0.0760.001060.00154
speciesSubdoligranulum_sp_4_3_54A2FAA0.0750.001090.00158
speciesEubacterium_eligens-0.0750.001120.00162
genusSiphoviridae_noname0.0750.001150.00165
genusCoriobacteriaceae_noname0.0740.001340.00192
speciesPeptostreptococcus_anaerobius0.0740.001350.00193
speciesOscillibacter_sp_KLE_1745-0.0740.001440.00205
speciesKlebsiella_sp_MS_92_30.0730.001540.00219
speciesBacteroides_faecis-0.0720.001870.00265
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0720.001910.0027
speciesEubacterium_dolichum0.0720.001930.00272
speciesBifidobacterium_angulatum-0.0710.002090.00294
speciesRuminococcus_lactaris-0.0690.002760.00387
speciesBacteroides_pectinophilus-0.0690.002820.00394
speciesEubacterium_biforme-0.0690.002880.00401
speciesClostridium_spiroforme0.0680.003360.00466
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0670.003510.00486
speciesBacteroides_massiliensis-0.0670.003670.00507
speciesClostridium_asparagiforme0.0670.003980.00548
speciesLachnospiraceae_bacterium_2_1_46FAA0.0640.005610.0077
genusButyricicoccus0.0630.006240.00851
speciesButyricicoccus_pullicaecorum0.0630.006240.00851
speciesRoseburia_intestinalis-0.0620.007030.00956
genusOlsenella0.0620.007280.00987
genusTuricibacter0.0620.007460.0101
speciesHoldemania_filiformis-0.0620.007570.0102
speciesBacteroides_thetaiotaomicron-0.0610.008150.011
speciesDorea_longicatena0.0610.008830.0118
phylumViruses_noname0.060.009180.0122
classViruses_noname0.060.009180.0122
speciesRuminococcus_callidus-0.060.009640.0128
speciesClostridium_sp_KLE_17550.060.009870.0131
speciesBacteroides_sp_2_1_22-0.0590.01010.0134
genusCollinsella0.0590.01080.0142
speciesPeptostreptococcaceae_noname_unclassified0.0580.01250.0164
speciesCoprobacillus_sp_D60.0570.01360.0178
speciesClostridium_leptum-0.0520.02420.0316
genusSuccinatimonas-0.0490.03240.0421
speciesSuccinatimonas_hippei-0.0490.03240.0421
genusAcidaminococcaceae_unclassified-0.0490.03350.0434
speciesBacteroides_nordii-0.0490.03370.0436
genusCatenibacterium-0.0480.03670.0472
speciesCatenibacterium_mitsuokai-0.0480.03670.0472
speciesRuminococcus_bromii0.0480.03770.0484
speciesParabacteroides_goldsteinii-0.0480.03780.0484
familySuccinivibrionaceae-0.0470.04060.0518
speciesC2likevirus_unclassified-0.0470.04110.0523
genusSutterellaceae_unclassified-0.0470.04360.0553
genusC2likevirus-0.0440.05530.07
speciesTuricibacter_unclassified0.0440.05660.0714
genusPrevotella-0.0430.06240.0785
speciesPorphyromonas_uenonis0.0430.06480.0813
speciesCollinsella_aerofaciens0.0420.06650.0833
genusMethanosphaera-0.0420.06760.0842
speciesMethanosphaera_stadtmanae-0.0420.06760.0842
orderViruses_noname0.0420.06780.0842
speciesBacteroides_stercoris-0.0410.07680.0951
speciesHoldemania_sp_AP20.040.08070.0997
speciesLachnospiraceae_bacterium_8_1_57FAA-0.040.08130.1
speciesClostridium_sp_ATCC_BAA_4420.040.08280.102
speciesBacteroides_salyersiae-0.0390.09520.117
orderCaudovirales0.0380.09830.12
speciesCoprococcus_eutactus-0.0370.1060.129
genusFlavonifractor0.0370.1070.13
speciesFlavonifractor_plautii0.0370.1070.13
speciesAnaerotruncus_colihominis0.0370.110.133
genusLambdalikevirus0.0360.1240.15
speciesBacteroides_sp_1_1_6-0.0350.1350.163
genusMyoviridae_noname0.0340.1410.169
speciesBacteroides_finegoldii-0.0330.150.18
speciesCoprobacillus_sp_29_10.0330.1560.186
speciesPrevotella_copri-0.0320.1660.198
speciesCollinsella_intestinalis0.0320.1680.2
speciesLactococcus_phage_936_sensu_lato-0.0310.1750.208
speciesMegamonas_rupellensis0.0310.1770.209
speciesEubacterium_sp_3_1_310.030.1890.223
speciesParabacteroides_johnsonii-0.030.1930.227
speciesSutterella_parvirubra0.030.20.235
genusClostridiaceae_noname0.0290.2090.244
speciesClostridiaceae_bacterium_JC1180.0290.2090.244
speciesBacteroides_coprocola0.0290.2090.244
speciesEnterobacteria_phage_HK5440.0290.2150.25
speciesBacteroides_barnesiae-0.0280.2190.254
speciesDorea_unclassified-0.0280.2220.257
speciesSlackia_piriformis-0.0280.2270.262
speciesPrevotella_bivia0.0280.2350.271
speciesMegamonas_hypermegale0.0270.2420.278
speciesCoprococcus_comes0.0270.2430.278
speciesLactobacillus_sanfranciscensis0.0270.2450.28
speciesOlsenella_unclassified0.0270.2470.282
speciesBacteroides_oleiciplenus0.0260.2530.288
familyClostridiales_noname0.0260.2540.288
familyRuminococcaceae0.0260.2610.295
speciesOdoribacter_unclassified-0.0260.2650.299
genusFaecalibacterium-0.0250.2750.309
speciesFaecalibacterium_prausnitzii-0.0250.2750.309
genusSlackia0.0240.2910.326
phylumSynergistetes0.0230.3140.349
classSynergistia0.0230.3140.349
orderSynergistales0.0230.3140.349
familySynergistaceae0.0230.3140.349
genusCoprococcus-0.0220.3350.371
speciesLactococcus_phage_P6800.0220.3470.384
speciesLactococcus_phage_bIL670.0210.3540.39
genusPyramidobacter0.0210.3640.4
speciesPyramidobacter_piscolens0.0210.3640.4
speciesAlistipes_unclassified0.0210.3660.401
speciesParabacteroides_unclassified-0.020.3970.434
speciesBacteroides_sp_4_3_47FAA-0.0170.4510.492
speciesPorphyromonas_asaccharolytica-0.0170.4560.496
speciesAcidaminococcus_intestini0.0160.4820.523
speciesBacteroides_eggerthii-0.0160.4850.525
speciesAcidaminococcus_unclassified-0.0150.5270.569
genusTunalikevirus0.0150.5290.57
speciesBacteroides_fluxus0.0130.5710.612
speciesRoseburia_unclassified-0.0130.5720.612
speciesCoprococcus_catus0.0130.5720.612
speciesMegasphaera_unclassified0.0120.5910.631
familySiphoviridae0.0110.6330.674
speciesKlebsiella_phage_KP360.0110.6350.675
speciesDialister_succinatiphilus-0.0110.6390.678
speciesBacteroides_sp_3_1_19-0.0110.6440.682
speciesMegasphaera_elsdenii0.010.6510.687
genusHoldemania-0.010.6780.714
orderAeromonadales0.0080.7230.76
speciesBacteroides_coprophilus-0.0080.7290.765
speciesCollinsella_tanakaei0.0070.7570.792
speciesParabacteroides_sp_20_3-0.0060.7840.819
speciesLactococcus_phage_jm20.0060.7870.82
speciesEubacterium_ramulus0.0060.80.832
genusPorphyromonas-0.0060.8020.832
speciesAcidaminococcus_fermentans0.0050.8220.851
speciesBifidobacterium_adolescentis-0.0050.8450.873
speciesCollinsella_unclassified0.0040.8690.896
speciesEubacterium_cylindroides-0.0030.8810.906
familyViruses_noname-0.0030.8950.916
genusViruses_noname-0.0030.8950.916
genusAcidaminococcus-0.0030.8980.917
speciesPrevotella_stercorea0.0030.90.917
speciesMegamonas_funiformis-0.0030.910.926
speciesBacteroides_plebeius0.0030.9130.927
familyPodoviridae-0.0010.9630.974
speciesLactococcus_phage_phi7-0.0010.9640.974
speciesBacteroides_salanitronis-0.0010.9660.974
familyEubacteriaceae0.0010.9690.975
genusEubacterium0.0010.9780.982
speciesHoldemania_unclassified0.0010.9820.984
speciesOdoribacter_laneus0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.03916607638380.00255122591044.07524562827e-21950.319124
Type II diabetesChina1831850.0175971630410.006882184875460.00038912440896312013.96907
Ulcerative colitisSpain78660.01047824822710.004081853465510.0006377225777754671.54054
Type II diabetesSweden53920.01862645483370.009695217456160.028023732625211163.77921
ObesityDenmark1691230.001800605591660.001272664235210.0640175472693570918.7728
Crohns diseaseSpain17660.02084866786960.004081853465510.08734316846661327744.1463
Type II diabetesDenmark752770.003522813679410.001526863581710.244662564491426646.763
Colorectal cancerAustria64350.02014411984410.01633885738730.5606472309981968366.5956
Rheumatoid arthritisChina127980.006474246601140.00635853336210.7324730344832326177.5703
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382