MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-11-30 07:19:09 PST
Job id & description: 2253, Ghdh
Query type: protein
Count queries & homologs: 1, 1
Min % identity & max e-value: 98%, 1e-40
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
Ghdh327473CompleteK00183COG0243unknownunknown96.1100.098.78
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusGordonibacter0.7311.91e-3124.51e-310
speciesGordonibacter_pamelaeae0.7311.91e-3124.51e-310
orderCoriobacteriales0.4988.72e-1181.03e-115
familyCoriobacteriaceae0.4988.72e-1181.03e-115
genusAdlercreutzia0.4679.73e-1027.65e-100
speciesAdlercreutzia_equolifaciens0.4679.73e-1027.65e-100
phylumActinobacteria0.4142.45e-781.45e-76
classActinobacteria0.4142.45e-781.45e-76
genusEggerthella0.4134.46e-782.34e-76
speciesEggerthella_lenta0.4136.03e-782.85e-76
speciesClostridium_leptum0.3971.04e-714.46e-70
speciesEggerthella_unclassified0.3959.3e-713.66e-69
speciesEubacterium_hallii0.3848.23e-672.99e-65
speciesRuminococcus_sp_5_1_39BFAA0.3811.13e-653.81e-64
speciesRuminococcus_obeum0.3751.22e-633.84e-62
genusRuminococcus0.3597.99e-582.36e-56
genusDorea0.3391.27e-513.53e-50
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.3391.46e-513.83e-50
genusHoldemania0.3222.12e-465.27e-45
speciesDorea_formicigenerans0.3215.58e-461.32e-44
speciesBlautia_hydrogenotrophica0.3191.63e-453.66e-44
speciesAnaerotruncus_colihominis0.3151.84e-443.95e-43
speciesSubdoligranulum_sp_4_3_54A2FAA0.2963.92e-398.04e-38
orderBifidobacteriales0.2964.61e-398.7e-38
familyBifidobacteriaceae0.2964.61e-398.7e-38
genusBifidobacterium0.2959.62e-391.75e-37
speciesRuminococcus_torques0.2932.1e-383.67e-37
speciesBifidobacterium_longum0.2837.44e-361.25e-34
speciesHaemophilus_parainfluenzae-0.2821.19e-351.94e-34
genusHaemophilus-0.2821.82e-352.86e-34
genusSubdoligranulum0.2781.41e-342.15e-33
speciesDorea_longicatena0.2772.2e-343.14e-33
genusBlautia0.2772.27e-343.14e-33
orderPasteurellales-0.2772.33e-343.14e-33
familyPasteurellaceae-0.2772.33e-343.14e-33
familyRuminococcaceae0.2772.68e-343.38e-33
phylumBacteroidetes-0.2772.78e-343.38e-33
classBacteroidia-0.2772.79e-343.38e-33
orderBacteroidales-0.2772.79e-343.38e-33
speciesErysipelotrichaceae_bacterium_21_30.2741.13e-331.33e-32
speciesSubdoligranulum_unclassified0.2724.14e-334.77e-32
genusCollinsella0.271.26e-321.42e-31
classClostridia0.2677.44e-327.98e-31
orderClostridiales0.2677.44e-327.98e-31
speciesErysipelotrichaceae_bacterium_6_1_450.2636.81e-317.14e-30
speciesCoprococcus_comes0.2587.25e-307.44e-29
speciesHoldemania_filiformis0.2587.55e-307.58e-29
speciesEubacterium_ramulus0.2562.48e-292.44e-28
speciesAnaerostipes_hadrus0.2554.07e-293.92e-28
genusAnaerostipes0.2521.55e-281.46e-27
speciesLachnospiraceae_bacterium_5_1_63FAA0.2481.59e-271.47e-26
speciesErysipelotrichaceae_bacterium_2_2_44A0.2463.91e-273.55e-26
speciesCollinsella_aerofaciens0.2431.25e-261.11e-25
speciesStreptococcus_thermophilus0.245.92e-265.17e-25
phylumVerrucomicrobia0.2381.74e-251.37e-24
classVerrucomicrobiae0.2381.74e-251.37e-24
orderVerrucomicrobiales0.2381.74e-251.37e-24
familyVerrucomicrobiaceae0.2381.74e-251.37e-24
genusAkkermansia0.2381.74e-251.37e-24
speciesAkkermansia_muciniphila0.2381.74e-251.37e-24
genusLachnospiraceae_noname0.2382.14e-251.66e-24
genusCoprococcus0.2357.08e-255.39e-24
genusAnaerotruncus0.2313.91e-242.93e-23
genusPseudoflavonifractor0.2281.86e-231.35e-22
speciesPseudoflavonifractor_capillosus0.2281.86e-231.35e-22
familyActinomycetaceae0.2282.15e-231.54e-22
speciesVeillonella_unclassified-0.2272.52e-231.78e-22
familyOscillospiraceae0.2272.98e-232.04e-22
genusOscillibacter0.2272.98e-232.04e-22
genusActinomyces0.2273.05e-232.06e-22
speciesCoprococcus_catus0.2264.61e-233.06e-22
speciesLachnospiraceae_bacterium_5_1_57FAA0.2223.02e-221.97e-21
speciesLachnospiraceae_bacterium_1_4_56FAA0.2223.04e-221.97e-21
genusVeillonella-0.225.29e-223.35e-21
genusPrevotella-0.225.32e-223.35e-21
speciesOscillibacter_unclassified0.227.56e-224.7e-21
speciesLachnospiraceae_bacterium_7_1_58FAA0.2172.24e-211.37e-20
speciesAlistipes_sp_AP110.2163.56e-212.15e-20
phylumFirmicutes0.2147.07e-214.22e-20
speciesRuminococcus_bromii0.2149.82e-215.79e-20
phylumFusobacteria-0.2089.59e-205.45e-19
classFusobacteriia-0.2089.59e-205.45e-19
orderFusobacteriales-0.2089.59e-205.45e-19
speciesClostridium_asparagiforme0.2062.65e-191.49e-18
speciesVeillonella_parvula-0.2044.23e-192.35e-18
familyFusobacteriaceae-0.2044.37e-192.4e-18
genusFusobacterium-0.2038.28e-194.49e-18
speciesFusobacterium_mortiferum-0.2038.76e-194.7e-18
familySutterellaceae-0.2011.98e-181.05e-17
familyPrevotellaceae-0.1961.34e-177.03e-17
familyEubacteriaceae0.1942.25e-171.17e-16
familyBacteroidaceae-0.1942.32e-171.18e-16
genusBacteroides-0.1942.32e-171.18e-16
genusEubacterium0.1942.5e-171.26e-16
speciesPrevotella_copri-0.1943.12e-171.55e-16
speciesPrevotella_stercorea-0.1874.08e-162.01e-15
speciesLactococcus_lactis0.1857.22e-163.51e-15
speciesVeillonella_dispar-0.1841.25e-156.02e-15
speciesDialister_invisus0.1831.44e-156.87e-15
classBetaproteobacteria-0.1812.93e-151.38e-14
speciesHoldemania_unclassified0.1813.19e-151.49e-14
orderActinomycetales0.1789.88e-154.57e-14
speciesPrevotella_buccae-0.1761.65e-147.56e-14
orderBurkholderiales-0.1752.33e-141.06e-13
genusMegasphaera-0.1752.94e-141.32e-13
genusLactococcus0.1735.3e-142.36e-13
genusSolobacterium0.1719.73e-144.25e-13
speciesSolobacterium_moorei0.1719.73e-144.25e-13
speciesEubacterium_sp_3_1_310.171.33e-135.76e-13
speciesLachnospiraceae_bacterium_1_1_57FAA0.1691.71e-137.34e-13
speciesVeillonella_atypica-0.1682.34e-139.95e-13
speciesAlistipes_onderdonkii0.1682.91e-131.23e-12
genusRuminococcaceae_noname0.1673.36e-131.39e-12
speciesRuminococcaceae_bacterium_D160.1673.36e-131.39e-12
familyLachnospiraceae0.1673.42e-131.4e-12
familyClostridiales_Family_XI_Incertae_Sedis0.1641e-124.07e-12
familyBacteroidales_noname0.1631.18e-124.68e-12
genusBacteroidales_noname0.1631.18e-124.68e-12
speciesBacteroidales_bacterium_ph80.1631.18e-124.68e-12
phylumProteobacteria-0.1631.33e-125.23e-12
speciesBifidobacterium_adolescentis0.1621.57e-126.12e-12
familyRikenellaceae0.1621.86e-127.14e-12
genusAlistipes0.1621.86e-127.14e-12
genusParvimonas0.1612.54e-129.67e-12
speciesParvimonas_unclassified0.1612.73e-121.03e-11
genusDialister0.1612.74e-121.03e-11
speciesClostridium_hathewayi0.1594.4e-121.64e-11
speciesLachnospiraceae_bacterium_3_1_46FAA0.1585.83e-122.15e-11
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1577.55e-122.76e-11
speciesMegasphaera_micronuciformis-0.1551.58e-115.74e-11
speciesBifidobacterium_animalis0.1551.79e-116.45e-11
speciesClostridium_citroniae0.1523.47e-111.24e-10
speciesBlautia_producta0.1524.35e-111.54e-10
speciesEubacterium_rectale0.1515.73e-112.02e-10
speciesEubacterium_siraeum0.156.13e-112.14e-10
speciesFusobacterium_varium-0.157.64e-112.65e-10
speciesKlebsiella_pneumoniae-0.1491.07e-103.69e-10
speciesPropionibacterium_freudenreichii0.1471.51e-105.16e-10
genusLeuconostoc0.1453.08e-101.05e-09
speciesBacteroides_vulgatus-0.1443.74e-101.26e-09
speciesBacteroides_plebeius-0.1443.92e-101.31e-09
genusActinobacillus-0.1435.85e-101.93e-09
speciesActinobacillus_unclassified-0.1435.85e-101.93e-09
genusClostridiaceae_noname0.1426.17e-102.01e-09
speciesClostridiaceae_bacterium_JC1180.1426.17e-102.01e-09
speciesCampylobacter_concisus-0.1426.47e-102.09e-09
genusPropionibacterium0.1426.51e-102.09e-09
speciesClostridium_nexile-0.1418.51e-102.71e-09
genusAggregatibacter-0.141.28e-094.05e-09
genusCoriobacteriaceae_noname0.141.32e-094.15e-09
speciesEubacterium_limosum0.1391.77e-095.53e-09
classGammaproteobacteria-0.1382.25e-096.99e-09
familyPropionibacteriaceae0.1372.43e-097.5e-09
speciesAnaerotruncus_unclassified0.1373.07e-099.41e-09
speciesCoriobacteriaceae_bacterium_phI0.1363.99e-091.22e-08
genusSutterellaceae_unclassified-0.1354.49e-091.36e-08
speciesBacteroides_thetaiotaomicron-0.1354.8e-091.44e-08
speciesEubacterium_ventriosum0.1345.68e-091.7e-08
speciesBacteroides_xylanisolvens-0.1346.24e-091.85e-08
speciesBifidobacterium_catenulatum0.1337.89e-092.33e-08
genusKlebsiella-0.1338.16e-092.39e-08
speciesLactobacillus_delbrueckii0.1338.78e-092.56e-08
speciesAggregatibacter_segnis-0.1311.19e-083.45e-08
speciesBifidobacterium_bifidum0.131.49e-084.29e-08
speciesMegamonas_unclassified-0.131.76e-085.03e-08
genusMegamonas-0.1292.17e-086.17e-08
familyEnterococcaceae0.1264.43e-081.25e-07
speciesEggerthella_sp_1_3_56FAA0.1264.64e-081.3e-07
genusEnterococcus0.1264.97e-081.39e-07
genusBarnesiella0.1248.09e-082.23e-07
speciesBarnesiella_intestinihominis0.1248.09e-082.23e-07
speciesEnterococcus_faecium0.1221.18e-073.24e-07
speciesFusobacterium_ulcerans-0.1221.32e-073.6e-07
genusPorphyromonas0.1211.54e-074.18e-07
speciesLactobacillus_casei_paracasei0.1211.56e-074.19e-07
genusFlavonifractor0.1211.57e-074.19e-07
speciesFlavonifractor_plautii0.1211.57e-074.19e-07
classErysipelotrichia0.121.78e-074.67e-07
orderErysipelotrichales0.121.78e-074.67e-07
familyErysipelotrichaceae0.121.78e-074.67e-07
speciesClostridium_symbiosum0.122.16e-075.63e-07
speciesRoseburia_inulinivorans-0.1182.86e-077.42e-07
speciesStreptococcus_sanguinis0.1183.39e-078.74e-07
familyClostridiales_noname0.1173.91e-071e-06
speciesPorphyromonas_asaccharolytica0.1164.4e-071.12e-06
speciesHaemophilus_paraphrohaemolyticus-0.1147.77e-071.97e-06
speciesClostridium_sp_KLE_17550.1121.27e-063.21e-06
genusCoprobacillus0.1092.08e-065.22e-06
speciesErysipelotrichaceae_bacterium_3_1_530.1092.29e-065.72e-06
speciesRoseburia_hominis0.1082.75e-066.83e-06
speciesOscillibacter_sp_KLE_17450.1083.12e-067.71e-06
speciesRuminococcus_lactaris0.1073.2e-067.87e-06
genusC2likevirus0.1073.49e-068.54e-06
speciesLactobacillus_plantarum0.1064.41e-061.07e-05
speciesRuminococcus_sp_JC3040.1055.22e-061.26e-05
speciesBacteroides_dorei-0.1055.31e-061.28e-05
familyLeuconostocaceae0.1046.06e-061.45e-05
speciesC2likevirus_unclassified0.1037.54e-061.8e-05
classNegativicutes-0.1038.1e-061.91e-05
orderSelenomonadales-0.1038.1e-061.91e-05
speciesBilophila_wadsworthia0.1021.02e-052.4e-05
genusPeptoniphilus0.1021.03e-052.41e-05
speciesPeptostreptococcus_anaerobius0.1011.15e-052.67e-05
speciesMegasphaera_unclassified-0.1011.31e-053.03e-05
orderBacillales0.11.37e-053.15e-05
speciesAlistipes_indistinctus0.11.5e-053.44e-05
speciesRuminococcus_callidus0.0991.68e-053.83e-05
speciesMegamonas_rupellensis-0.0991.97e-054.47e-05
speciesClostridium_bolteae0.0982.26e-055.1e-05
speciesClostridium_clostridioforme0.0982.28e-055.12e-05
familyStreptococcaceae0.0982.32e-055.19e-05
orderLactobacillales0.0963.46e-057.7e-05
speciesAlistipes_putredinis0.0953.64e-058.07e-05
familyBacillales_noname0.0953.85e-058.45e-05
genusGemella0.0953.85e-058.45e-05
familyClostridiaceae0.0953.9e-058.52e-05
genusClostridium0.0953.94e-058.57e-05
classBacilli0.0954.24e-059.18e-05
speciesMegamonas_hypermegale-0.0945.01e-050.000108
speciesClostridium_perfringens-0.0935.23e-050.000112
genusErysipelotrichaceae_noname0.0935.53e-050.000118
genusStreptococcus0.0926.59e-050.00014
familyVeillonellaceae-0.0917.62e-050.000161
familySiphoviridae0.0918.12e-050.000171
speciesClostridiales_bacterium_1_7_47FAA0.0918.19e-050.000172
speciesLactobacillus_acidophilus0.0918.74e-050.000183
speciesLactobacillus_rhamnosus0.099.32e-050.000194
speciesLactobacillus_mucosae-0.0890.0001210.00025
speciesEubacterium_cylindroides0.0880.0001410.00029
classEpsilonproteobacteria-0.0880.0001420.00029
orderCampylobacterales-0.0880.0001420.00029
familyCampylobacteraceae-0.0860.0001980.000403
speciesClostridium_spiroforme0.0860.0002080.000421
speciesLactobacillus_salivarius-0.0850.0002310.000466
speciesClostridium_bartlettii0.0850.0002470.000496
genusCatenibacterium-0.0840.0002550.000508
speciesCatenibacterium_mitsuokai-0.0840.0002550.000508
genusBilophila0.0840.0002590.000514
speciesOdoribacter_laneus0.0840.0002650.000523
genusCampylobacter-0.0840.0002770.000545
speciesStreptococcus_parasanguinis0.0840.0002820.000552
genusRoseburia-0.0830.0003030.000591
phylumViruses_noname0.0820.0003570.000691
classViruses_noname0.0820.0003570.000691
speciesBilophila_unclassified0.0810.0004360.00084
speciesMegasphaera_elsdenii-0.0810.0004480.00086
classDeltaproteobacteria0.0810.0004850.000919
orderDesulfovibrionales0.0810.0004850.000919
familyDesulfovibrionaceae0.0810.0004850.000919
speciesBacteroides_stercoris-0.080.0005570.00105
speciesBacteroides_coprocola-0.080.0005580.00105
speciesCoprobacillus_sp_29_10.080.0005720.00107
speciesBacteroides_ovatus-0.0790.0006690.00125
speciesMethanobrevibacter_smithii0.0780.0007450.00138
orderCaudovirales0.0770.0008190.00152
speciesAlistipes_finegoldii0.0770.0008320.00153
speciesMethanobrevibacter_unclassified0.0770.0008410.00154
speciesPorphyromonas_uenonis0.0770.0009190.00168
speciesHaemophilus_sputorum-0.0760.0009480.00173
speciesBacteroides_fragilis-0.0760.0009510.00173
speciesStreptococcus_mutans0.0760.001010.00183
speciesBacteroides_massiliensis-0.0760.001030.00186
phylumEuryarchaeota0.0760.001050.00187
speciesEnterobacter_aerogenes-0.0760.001050.00187
speciesBifidobacterium_pseudocatenulatum0.0760.001050.00187
orderPseudomonadales0.0750.001090.00193
genusMethanobrevibacter0.0750.001210.00214
speciesLactobacillus_gasseri0.0750.001230.00217
classMethanobacteria0.0730.00160.00279
orderMethanobacteriales0.0730.00160.00279
familyMethanobacteriaceae0.0730.00160.00279
speciesCoprobacillus_unclassified0.0720.001760.00305
genusPhascolarctobacterium-0.0720.001770.00305
speciesPhascolarctobacterium_succinatutens-0.0720.001770.00305
speciesFusobacterium_nucleatum-0.0720.001830.00314
speciesDesulfovibrio_desulfuricans0.0720.001840.00315
genusSutterella-0.0720.001930.00329
speciesParabacteroides_unclassified-0.0710.002020.00343
genusPeptostreptococcus0.0710.002110.00357
genusEnterobacter-0.0710.002150.00362
orderEnterobacteriales-0.0710.002280.00382
familyEnterobacteriaceae-0.0710.002280.00382
speciesDorea_unclassified-0.070.002430.00405
genusPantoea-0.070.002510.00416
speciesPantoea_unclassified-0.070.002510.00416
familyLactobacillaceae0.0690.002680.00442
genusClostridiales_noname0.0690.002770.00456
speciesStreptococcus_gordonii0.0690.002980.00488
speciesBacteroides_faecis-0.0690.003010.00492
genusLactobacillus0.0680.003260.00531
speciesLactobacillus_ruminis-0.0680.003290.00534
genusParabacteroides-0.0680.003320.00537
speciesCoprobacillus_sp_D60.0680.003420.00551
speciesMegamonas_funiformis-0.0680.003470.00557
speciesEubacterium_dolichum0.0670.003550.00568
familyPeptostreptococcaceae0.0670.003570.00569
speciesButyrivibrio_unclassified0.0670.003720.00591
speciesParaprevotella_xylaniphila-0.0670.003910.00619
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0660.004240.00669
familyStaphylococcaceae0.0650.004840.00761
speciesEnterobacter_cloacae-0.0650.004850.00761
genusEscherichia-0.0650.005070.00792
speciesSutterella_wadsworthensis-0.0650.005180.00807
speciesMitsuokella_multacida-0.0650.005250.00815
orderAeromonadales-0.0640.00550.00851
genusParaprevotella-0.0640.005640.0087
speciesAcidaminococcus_unclassified0.0630.006180.0095
speciesParaprevotella_unclassified-0.0630.006520.00999
genusRothia0.0630.006770.0103
speciesAlistipes_unclassified0.0630.006820.0104
familyMicrococcaceae0.0620.007130.0108
speciesHoldemania_sp_AP20.0620.007510.0114
speciesEscherichia_coli-0.0610.008010.0121
speciesRoseburia_unclassified0.0610.008720.0131
speciesLactococcus_phage_bIL670.060.009860.0148
speciesAlistipes_senegalensis0.0590.01110.0166
speciesAlistipes_sp_HGB50.0580.01150.0171
genusStaphylococcus0.0580.01230.0183
genusSiphoviridae_noname0.0580.01240.0183
speciesBacteroides_finegoldii-0.0580.01270.0187
speciesStreptococcus_pasteurianus-0.0580.01280.0188
familyAcidaminococcaceae-0.0570.01450.0213
genusPeptostreptococcaceae_noname0.0560.01510.0221
speciesStreptococcus_salivarius0.0560.01530.0223
speciesAcidaminococcus_intestini-0.0550.01640.0238
genusOlsenella0.0550.01750.0253
genusMorganella-0.0540.01950.0281
speciesMorganella_morganii-0.0540.01950.0281
speciesStreptococcus_anginosus0.0540.02010.0288
speciesDesulfovibrio_piger-0.0530.02130.0305
speciesLactobacillus_sanfranciscensis0.0530.02190.0312
genusSuccinatimonas-0.0530.0220.0312
speciesSuccinatimonas_hippei-0.0530.0220.0312
speciesClostridium_ramosum0.0530.0230.0325
speciesBacteroides_nordii-0.0520.02590.0365
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0510.02750.0385
speciesParaprevotella_clara-0.0510.02750.0385
speciesOlsenella_unclassified0.050.03060.0427
speciesBacteroides_coprophilus-0.0490.03290.0458
speciesEubacterium_biforme-0.0480.03640.0505
speciesStreptococcus_vestibularis0.0480.03650.0505
familyMyoviridae-0.0480.03860.0533
familySuccinivibrionaceae-0.0480.03960.0545
speciesEubacterium_eligens-0.0470.04020.0552
speciesCollinsella_unclassified0.0470.04090.056
speciesRothia_mucilaginosa0.0470.04180.057
speciesBacteroides_salyersiae-0.0460.0480.0652
speciesMitsuokella_unclassified0.0460.04810.0652
genusMitsuokella0.0450.05070.0685
genusTuricibacter0.0450.05080.0685
speciesTuricibacter_unclassified0.0450.05280.071
genusCoprobacter0.0440.05960.0797
speciesCoprobacter_fastidiosus0.0440.05960.0797
speciesAlistipes_shahii0.0420.06840.0912
speciesPeptostreptococcus_stomatis0.0420.06940.0923
speciesButyrivibrio_crossotus-0.0410.07810.104
speciesClostridium_sp_L2_500.040.08120.107
speciesBacteroides_uniformis0.040.08130.107
familyOxalobacteraceae0.040.08140.107
speciesParabacteroides_sp_20_30.040.08260.108
speciesBacteroides_oleiciplenus-0.040.08340.109
speciesRuminococcus_gnavus-0.0390.08940.117
familyPodoviridae0.0380.09720.126
speciesAcidaminococcus_fermentans-0.0380.09720.126
speciesStreptococcus_australis0.0380.1020.132
speciesBacteroides_intestinalis-0.0380.1040.134
speciesGemella_morbillorum0.0370.1130.145
genusSlackia0.0360.1190.153
genusOxalobacter0.0360.1220.156
speciesOxalobacter_formigenes0.0360.1220.156
orderViruses_noname0.0360.1240.158
speciesBacteroides_sp_4_3_47FAA0.0350.1270.161
speciesBacteroides_caccae-0.0350.1340.17
genusParasutterella-0.0340.1410.177
speciesParasutterella_excrementihominis-0.0340.1410.177
speciesDialister_succinatiphilus-0.0340.1440.181
speciesKlebsiella_sp_MS_92_3-0.0340.1450.182
speciesSlackia_piriformis0.0330.1580.197
speciesStreptococcus_phage_Sfi210.0320.1610.201
genusProteus-0.0320.1620.201
genusButyricicoccus0.0320.1650.204
speciesButyricicoccus_pullicaecorum0.0320.1650.204
speciesParabacteroides_distasonis-0.0320.1660.205
genusButyricimonas-0.0320.1670.205
speciesButyricimonas_synergistica-0.0320.1670.205
speciesSutterella_parvirubra-0.0320.1680.205
speciesProteus_mirabilis-0.0310.1850.226
speciesLactococcus_phage_P6800.030.1920.234
genusTunalikevirus-0.0290.2050.248
genusAcidaminococcaceae_unclassified0.0290.2050.248
genusDesulfovibrio0.0280.2240.27
speciesCoprococcus_sp_ART55_10.0270.2390.288
speciesStreptococcus_infantarius-0.0270.2480.298
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0270.2510.301
speciesTuricibacter_sanguinis0.0260.2650.316
speciesBifidobacterium_dentium0.0260.2650.316
speciesLachnospiraceae_bacterium_2_1_58FAA0.0250.280.333
speciesOscillibacter_sp_KLE_17280.0250.2810.333
speciesBacteroides_pectinophilus-0.0250.2850.337
speciesBacteroides_eggerthii-0.0240.2920.345
speciesLeuconostoc_lactis0.0240.2970.35
speciesKlebsiella_phage_KP36-0.0240.2980.35
speciesEnterococcus_faecalis0.0240.3020.354
speciesCitrobacter_freundii-0.0230.310.362
speciesParabacteroides_johnsonii-0.0230.3150.367
speciesParabacteroides_goldsteinii-0.0230.3240.377
speciesStreptococcus_lutetiensis-0.0220.3340.387
familyViruses_noname-0.0210.3580.413
genusViruses_noname-0.0210.3580.413
speciesParabacteroides_sp_D13-0.0210.3590.413
speciesParabacteroides_merdae-0.0210.3680.423
speciesCitrobacter_unclassified-0.0210.3710.425
speciesEscherichia_unclassified0.020.3980.455
genusPyramidobacter0.0190.410.466
speciesPyramidobacter_piscolens0.0190.410.466
speciesPrevotella_bivia0.0190.4170.473
speciesCollinsella_intestinalis0.0180.4310.488
genusMyoviridae_noname-0.0180.4470.505
genusButyrivibrio0.0180.4480.505
genusOdoribacter0.0170.4490.505
speciesLactococcus_phage_jm20.0170.4530.508
genusFaecalibacterium-0.0170.4620.516
speciesFaecalibacterium_prausnitzii-0.0170.4620.516
speciesBacteroides_sp_3_1_19-0.0150.5070.564
speciesLactococcus_phage_936_sensu_lato-0.0150.510.566
genusMethanosphaera0.0150.5190.574
speciesMethanosphaera_stadtmanae0.0150.5190.574
speciesLactobacillus_crispatus-0.0150.5270.581
genusCitrobacter-0.0140.5460.601
phylumSynergistetes0.0140.5580.607
classSynergistia0.0140.5580.607
orderSynergistales0.0140.5580.607
familySynergistaceae0.0140.5580.607
speciesBifidobacterium_angulatum-0.0140.5580.607
speciesEnterobacteria_phage_HK544-0.0130.5680.616
speciesStreptococcus_mitis_oralis_pneumoniae0.0130.5820.63
speciesLactobacillus_fermentum0.010.6630.716
speciesKlebsiella_oxytoca0.0090.6830.736
speciesCoprococcus_eutactus-0.0090.6970.749
speciesBacteroides_sp_1_1_6-0.0090.70.75
speciesBifidobacterium_breve-0.0090.7010.75
speciesRuminococcus_champanellensis0.0090.7060.754
genusAcidaminococcus0.0090.7080.754
speciesBacteroides_sp_2_1_220.0090.710.755
speciesOdoribacter_splanchnicus0.0080.7180.762
genusLambdalikevirus-0.0080.7410.784
speciesLactobacillus_amylovorus-0.0070.750.792
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0070.7550.795
speciesBacteroides_fluxus-0.0070.7570.796
speciesBacteroides_barnesiae0.0070.7590.796
speciesBacteroides_salanitronis-0.0070.7650.8
speciesAnaerostipes_unclassified0.0070.7660.8
genusWeissella0.0060.7850.818
speciesWeissella_cibaria0.0060.790.821
speciesClostridium_sp_ATCC_BAA_4420.0050.8210.852
speciesBacteroides_clarus0.0050.8360.865
speciesBacteroides_cellulosilyticus0.0050.840.868
speciesWeissella_confusa-0.0030.890.917
speciesKlebsiella_unclassified0.0030.8970.921
speciesLactobacillus_vaginalis0.0030.8980.921
speciesOdoribacter_unclassified0.0020.920.942
speciesLactobacillus_oris-0.0020.9260.946
speciesPeptostreptococcaceae_noname_unclassified-0.0020.9380.953
familyPorphyromonadaceae-0.0020.9390.953
speciesRoseburia_intestinalis-0.0020.9390.953
speciesLactococcus_garvieae0.0010.9560.967
speciesLactobacillus_reuteri-0.0010.9570.967
speciesCollinsella_tanakaei-0.0010.9610.969
familyBurkholderiales_noname-0.0010.9750.981
genusBurkholderiales_noname0.0010.9830.985
speciesBurkholderiales_bacterium_1_1_470.0010.9830.985
speciesLactococcus_phage_phi70.00.9870.987
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.0001814973164245.8042625389e-050.00035833176900811653.85009
Rheumatoid arthritisChina127980.0004946966571680.0002140423306410.0096419105998610043.34812
Liver cirrhosisChina1201142.21434553294e-055.49771101885e-050.0112285563311105637.1393
Type II diabetesDenmark752770.0001428954564098.277974635e-050.0824886844636889929.1704
Crohns diseaseSpain17660.0002106632749110.0003534034505140.24923193321797359.7606
Type II diabetesSweden53920.0004212224894060.0004356151416720.5775596881511813561.4121
Ulcerative colitisSpain78660.000383893608590.0003534034505140.6571536399422293275.6482
Colorectal cancerAustria64350.001065863130430.0010717810910.670752800892222875.2064
ObesityDenmark1691237.20125386351e-059.74662042153e-050.9628860533852967397.5732
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382