MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-12-04 20:06:25 PST
Job id & description: 2278, 2.3
Query type: protein
Count queries & homologs: 12, 11
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
WP_061055055.1-NADH-dependent164383CompleteK00244COG1902;COG1053ProteobacteriaEnterobacter99.0198.3839.86
WP_061055055.1-NADH-dependent164310CompleteK00244COG1902;COG1053ProteobacteriaEnterobacter99.0198.3839.46
WP_061055055.1-NADH-dependent164388CompleteK00244COG1902;COG1053ProteobacteriaEnterobacter99.0198.3839.46
WP_061055055.1-NADH-dependent164666CompleteK00244COG1902;COG1053ProteobacteriaKlebsiella99.498.9238.71
WP_061055055.1-NADH-dependent164399CompleteK00244COG1902;COG1053ProteobacteriaEnterobacter99.0198.3840.16
WP_061055055.1-NADH-dependent164389CompleteK00244COG1902;COG1053ProteobacteriaEnterobacter99.0198.3840.0
WP_002484651.1-MULTISPECIES:164807CompleteK00244COG1902;COG1053ProteobacteriaKlebsiella99.999.3539.07
WP_002484651.1-MULTISPECIES:164498CompleteK00244COG1902;COG1053ProteobacteriaKlebsiella99.999.3538.67
WP_002479043.1-MULTISPECIES:164881CompleteK00244COG1902;COG1053ProteobacteriaEnterobacter99.3199.2438.42
WP_002484651.1-MULTISPECIES:164880CompleteK00244COG1902;COG1053ProteobacteriaKlebsiella99.699.0338.39
WP_012129179.1-flavocytochrome467483Lack both endsK00244COG1902;COG1053ProteobacteriaKlebsiella74.3699.0832.52
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusKlebsiella0.8590.00.0
speciesKlebsiella_pneumoniae0.8160.00.0
genusEnterobacter0.6442.61e-2194.11e-217
speciesEnterobacter_cloacae0.6288.94e-2061.05e-203
orderEnterobacteriales0.6041.19e-1869.36e-185
familyEnterobacteriaceae0.6041.19e-1869.36e-185
classGammaproteobacteria0.6016.41e-1844.32e-182
phylumProteobacteria0.4874.49e-1122.65e-110
genusEscherichia0.456.77e-943.55e-92
speciesEscherichia_coli0.4191.51e-807.13e-79
genusCitrobacter0.4038.17e-743.51e-72
speciesKlebsiella_unclassified0.3962.43e-719.26e-70
speciesCitrobacter_unclassified0.3962.55e-719.26e-70
speciesCitrobacter_freundii0.3921.13e-693.81e-68
speciesKlebsiella_oxytoca0.3811.02e-653.21e-64
speciesSubdoligranulum_unclassified-0.3589.92e-582.93e-56
genusSubdoligranulum-0.3581.16e-573.22e-56
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3438.42e-532.21e-51
speciesEscherichia_unclassified0.347.87e-521.96e-50
phylumFusobacteria0.3222.62e-465.62e-45
classFusobacteriia0.3222.62e-465.62e-45
orderFusobacteriales0.3222.62e-465.62e-45
genusFusobacterium0.327.96e-461.63e-44
familyFusobacteriaceae0.328.36e-461.64e-44
speciesEubacterium_siraeum-0.3182.59e-454.89e-44
genusPseudoflavonifractor-0.317.31e-431.28e-41
speciesPseudoflavonifractor_capillosus-0.317.31e-431.28e-41
genusWeissella0.3051.34e-412.26e-40
genusVeillonella0.2941.54e-382.51e-37
speciesVeillonella_parvula0.2924.67e-387.35e-37
speciesHaemophilus_parainfluenzae0.2885.7e-378.68e-36
speciesWeissella_confusa0.2879.31e-371.37e-35
genusHaemophilus0.2852.14e-363.06e-35
speciesClostridium_leptum-0.2852.94e-364.08e-35
orderPasteurellales0.2837.39e-369.69e-35
familyPasteurellaceae0.2837.39e-369.69e-35
speciesAnaerotruncus_unclassified-0.2741.29e-331.65e-32
speciesMegamonas_unclassified0.2718.95e-331.11e-31
genusMegamonas0.271.27e-321.54e-31
speciesVeillonella_unclassified0.2691.94e-322.29e-31
genusPantoea0.2661.52e-311.71e-30
speciesPantoea_unclassified0.2661.52e-311.71e-30
speciesEnterobacter_aerogenes0.2652.51e-312.76e-30
speciesClostridium_nexile0.2594.08e-304.38e-29
speciesWeissella_cibaria0.2562e-292.1e-28
genusPrevotella0.2546.2e-296.36e-28
speciesClostridium_perfringens0.2539.17e-299.21e-28
genusButyrivibrio-0.2496.54e-286.43e-27
speciesBacteroides_plebeius0.2496.78e-286.53e-27
speciesFusobacterium_mortiferum0.2455.04e-274.76e-26
phylumVerrucomicrobia-0.2449.18e-277.74e-26
classVerrucomicrobiae-0.2449.18e-277.74e-26
orderVerrucomicrobiales-0.2449.18e-277.74e-26
familyVerrucomicrobiaceae-0.2449.18e-277.74e-26
genusAkkermansia-0.2449.18e-277.74e-26
speciesAkkermansia_muciniphila-0.2449.18e-277.74e-26
speciesBifidobacterium_adolescentis-0.2422.07e-261.71e-25
speciesLactobacillus_salivarius0.2422.95e-262.4e-25
speciesMegasphaera_micronuciformis0.2415.01e-264.01e-25
speciesLactococcus_garvieae0.2391.24e-259.75e-25
speciesRuminococcus_gnavus0.2363.96e-253.06e-24
speciesPrevotella_copri0.2315.4e-244.11e-23
speciesPrevotella_buccae0.2299.19e-246.89e-23
genusRuminococcaceae_noname-0.2291.2e-238.71e-23
speciesRuminococcaceae_bacterium_D16-0.2291.2e-238.71e-23
speciesBacteroides_stercoris0.2273.02e-232.16e-22
genusDorea-0.2256.43e-234.53e-22
speciesC2likevirus_unclassified-0.2231.48e-221.03e-21
genusAnaerotruncus-0.2222.2e-221.5e-21
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2222.4e-221.62e-21
familyRuminococcaceae-0.2222.67e-221.77e-21
genusCoprococcus-0.2214e-222.62e-21
speciesDorea_longicatena-0.2198.06e-225.21e-21
speciesVeillonella_atypica0.2198.97e-225.72e-21
genusC2likevirus-0.2181.4e-218.81e-21
speciesVeillonella_dispar0.2172.76e-211.71e-20
familyLeuconostocaceae0.2154.98e-213.03e-20
speciesFusobacterium_nucleatum0.2155.01e-213.03e-20
speciesEubacterium_hallii-0.2121.64e-209.8e-20
speciesButyrivibrio_unclassified-0.2121.96e-201.16e-19
familyOscillospiraceae-0.2112.78e-201.6e-19
genusOscillibacter-0.2112.78e-201.6e-19
genusMegasphaera0.2113.28e-201.87e-19
speciesPrevotella_stercorea0.213.78e-202.12e-19
speciesCoprococcus_comes-0.2081.19e-196.61e-19
speciesEubacterium_ramulus-0.2052.95e-191.62e-18
speciesErysipelotrichaceae_bacterium_21_3-0.2053.44e-191.87e-18
genusBarnesiella-0.2021.08e-185.73e-18
speciesBarnesiella_intestinihominis-0.2021.08e-185.73e-18
speciesOscillibacter_unclassified-0.22.73e-181.43e-17
speciesStreptococcus_anginosus0.1985.62e-182.91e-17
speciesStreptococcus_thermophilus-0.1985.8e-182.98e-17
orderClostridiales-0.1969.98e-185.02e-17
classClostridia-0.1969.99e-185.02e-17
speciesBacteroides_uniformis-0.1961.21e-176.01e-17
classBacilli0.1942.67e-171.31e-16
orderLactobacillales0.1942.79e-171.36e-16
speciesStreptococcus_salivarius0.1933.68e-171.77e-16
speciesMethanobrevibacter_smithii-0.191.16e-165.53e-16
speciesBifidobacterium_pseudocatenulatum0.1882.5e-161.18e-15
speciesCollinsella_aerofaciens-0.1873.64e-161.7e-15
orderCoriobacteriales-0.1858.03e-163.68e-15
familyCoriobacteriaceae-0.1858.03e-163.68e-15
familyEnterococcaceae0.1858.25e-163.74e-15
genusMethanobrevibacter-0.1841.05e-154.72e-15
genusEnterococcus0.1841.06e-154.72e-15
genusPyramidobacter0.1841.1e-154.81e-15
speciesPyramidobacter_piscolens0.1841.1e-154.81e-15
speciesMitsuokella_unclassified-0.1841.16e-155.02e-15
speciesLeuconostoc_lactis0.1831.31e-155.62e-15
genusCollinsella-0.1831.55e-156.59e-15
speciesMegamonas_funiformis0.1821.92e-158.09e-15
speciesLactobacillus_mucosae0.1812.6e-151.09e-14
classMethanobacteria-0.1813.06e-151.24e-14
orderMethanobacteriales-0.1813.06e-151.24e-14
familyMethanobacteriaceae-0.1813.06e-151.24e-14
phylumSynergistetes0.1813.16e-151.24e-14
classSynergistia0.1813.16e-151.24e-14
orderSynergistales0.1813.16e-151.24e-14
familySynergistaceae0.1813.16e-151.24e-14
speciesStreptococcus_infantarius0.184.56e-151.78e-14
speciesCoprococcus_catus-0.185.01e-151.94e-14
speciesStreptococcus_mitis_oralis_pneumoniae0.1771.11e-144.26e-14
speciesBlautia_hydrogenotrophica-0.1761.6e-146.09e-14
speciesFusobacterium_ulcerans0.1761.9e-147.17e-14
phylumEuryarchaeota-0.1762.08e-147.79e-14
speciesBacteroides_intestinalis0.1743.2e-141.19e-13
genusMitsuokella-0.1743.98e-141.47e-13
speciesMegamonas_rupellensis0.1735.55e-142.03e-13
familySiphoviridae-0.1727e-142.54e-13
speciesSutterella_wadsworthensis-0.1727.9e-142.85e-13
genusCoprobacter-0.171.35e-134.79e-13
speciesCoprobacter_fastidiosus-0.171.35e-134.79e-13
familyMyoviridae0.1682.54e-138.95e-13
speciesKlebsiella_sp_MS_92_30.1682.9e-131.01e-12
genusActinobacillus0.1673.34e-131.15e-12
speciesActinobacillus_unclassified0.1673.34e-131.15e-12
speciesMegamonas_hypermegale0.1664.36e-131.49e-12
familyPeptostreptococcaceae0.1664.64e-131.58e-12
genusSutterella-0.1657.67e-132.59e-12
genusAggregatibacter0.1649.71e-133.25e-12
genusPeptostreptococcaceae_noname0.163.04e-121.01e-11
speciesAnaerostipes_hadrus-0.163.34e-121.1e-11
familyBacteroidales_noname-0.1594.41e-121.43e-11
genusBacteroidales_noname-0.1594.41e-121.43e-11
speciesBacteroidales_bacterium_ph8-0.1594.41e-121.43e-11
speciesRuminococcus_sp_5_1_39BFAA-0.1594.52e-121.45e-11
genusCampylobacter0.1585.68e-121.81e-11
speciesBifidobacterium_dentium0.1586.04e-121.91e-11
speciesFusobacterium_varium0.1586.51e-122.05e-11
speciesCampylobacter_concisus0.1578.12e-122.54e-11
familyCampylobacteraceae0.1561.09e-113.38e-11
familyStreptococcaceae0.1561.2e-113.7e-11
classEpsilonproteobacteria0.1542.14e-116.51e-11
orderCampylobacterales0.1542.14e-116.51e-11
familyPrevotellaceae0.1542.15e-116.51e-11
speciesEubacterium_rectale-0.1542.39e-117.19e-11
speciesAggregatibacter_segnis0.1532.6e-117.77e-11
familyPorphyromonadaceae-0.1524.49e-111.33e-10
speciesBacteroides_coprocola0.1514.67e-111.38e-10
speciesBacteroides_fragilis0.157.31e-112.14e-10
speciesStreptococcus_australis0.1499.1e-112.65e-10
phylumFirmicutes-0.1481.15e-103.33e-10
speciesClostridium_bartlettii0.1471.61e-104.63e-10
speciesAlistipes_senegalensis-0.1471.71e-104.89e-10
genusStreptococcus0.1462.49e-107.08e-10
genusRuminococcus-0.1452.8e-107.91e-10
speciesCoprobacillus_unclassified0.1434.83e-101.36e-09
familyBacillales_noname0.1435.35e-101.49e-09
genusGemella0.1435.35e-101.49e-09
speciesDorea_formicigenerans-0.1427.36e-102.03e-09
genusOdoribacter-0.1418.66e-102.38e-09
familyVeillonellaceae0.141.34e-093.66e-09
familyRikenellaceae-0.1391.8e-094.85e-09
genusAlistipes-0.1391.8e-094.85e-09
speciesEnterococcus_faecalis0.1372.82e-097.56e-09
speciesClostridium_bolteae0.1363.12e-098.32e-09
genusLactobacillus0.1363.33e-098.81e-09
familyEubacteriaceae-0.1363.36e-098.81e-09
genusEubacterium-0.1363.36e-098.81e-09
genusSiphoviridae_noname-0.1363.78e-099.86e-09
speciesBacteroides_thetaiotaomicron0.1354.31e-091.12e-08
familyLactobacillaceae0.1345.64e-091.45e-08
speciesBacteroides_xylanisolvens0.1345.69e-091.46e-08
speciesEnterococcus_faecium0.1321.09e-082.78e-08
phylumActinobacteria-0.1311.18e-082.98e-08
classActinobacteria-0.1311.18e-082.98e-08
genusCoprobacillus0.1311.36e-083.41e-08
orderBacillales0.1292e-084.99e-08
genusAdlercreutzia-0.1292.12e-085.24e-08
speciesAdlercreutzia_equolifaciens-0.1292.12e-085.24e-08
genusAnaerostipes-0.1282.72e-086.69e-08
genusMorganella0.1283.08e-087.49e-08
speciesMorganella_morganii0.1283.08e-087.49e-08
speciesRoseburia_unclassified-0.1273.45e-088.35e-08
speciesOdoribacter_splanchnicus-0.1273.72e-088.96e-08
speciesClostridium_symbiosum0.1264.19e-081e-07
speciesClostridium_citroniae0.1256.37e-081.52e-07
speciesBacteroides_nordii0.1247.84e-081.86e-07
genusSolobacterium0.1238.93e-082.1e-07
speciesSolobacterium_moorei0.1238.93e-082.1e-07
speciesBacteroides_finegoldii0.1239.22e-082.15e-07
speciesHaemophilus_paraphrohaemolyticus0.1221.1e-072.56e-07
speciesButyrivibrio_crossotus-0.1221.11e-072.57e-07
speciesRuminococcus_torques-0.1221.23e-072.83e-07
speciesClostridium_ramosum0.1221.27e-072.9e-07
speciesRoseburia_hominis-0.1221.27e-072.9e-07
speciesRuminococcus_obeum-0.1211.43e-073.24e-07
speciesBacteroides_salyersiae0.1211.66e-073.75e-07
speciesBacteroides_oleiciplenus0.121.73e-073.89e-07
genusTunalikevirus0.121.74e-073.89e-07
speciesAlistipes_sp_AP11-0.121.9e-074.23e-07
speciesOlsenella_unclassified-0.1192.71e-076.01e-07
speciesLactococcus_phage_P680-0.1183.34e-077.37e-07
speciesOdoribacter_unclassified-0.1165.1e-071.12e-06
speciesClostridium_hathewayi0.1155.6e-071.22e-06
speciesPeptostreptococcus_stomatis0.1155.84e-071.27e-06
speciesStreptococcus_gordonii0.1156.83e-071.48e-06
speciesKlebsiella_phage_KP360.1147.29e-071.57e-06
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.1148.14e-071.75e-06
speciesEnterobacteria_phage_HK5440.1138.7e-071.86e-06
familyPropionibacteriaceae-0.1139.45e-072.01e-06
speciesPropionibacterium_freudenreichii-0.1111.53e-063.24e-06
genusMyoviridae_noname0.1111.54e-063.25e-06
speciesBifidobacterium_animalis-0.111.7e-063.57e-06
speciesAlistipes_onderdonkii-0.1092.26e-064.72e-06
speciesMegasphaera_unclassified0.1092.32e-064.82e-06
speciesStreptococcus_sanguinis0.1092.49e-065.15e-06
genusLambdalikevirus0.1092.54e-065.24e-06
speciesProteus_mirabilis0.1083.06e-066.28e-06
speciesOscillibacter_sp_KLE_1745-0.1083.11e-066.35e-06
speciesBacteroides_massiliensis0.1083.17e-066.45e-06
speciesClostridiales_bacterium_1_7_47FAA0.1073.23e-066.54e-06
speciesLactobacillus_sanfranciscensis0.1073.28e-066.62e-06
genusProteus0.1073.36e-066.75e-06
speciesMethanobrevibacter_unclassified-0.1073.68e-067.36e-06
speciesAlistipes_indistinctus-0.1064.46e-068.88e-06
genusPeptostreptococcus0.1055.79e-061.15e-05
speciesAlistipes_unclassified-0.1046.59e-061.3e-05
speciesHaemophilus_sputorum0.1046.81e-061.34e-05
speciesErysipelotrichaceae_bacterium_6_1_45-0.1047.18e-061.41e-05
genusOlsenella-0.1038.07e-061.57e-05
genusClostridium0.1038.85e-061.72e-05
genusBifidobacterium-0.1029.13e-061.77e-05
speciesRuminococcus_champanellensis-0.1029.51e-061.83e-05
speciesRothia_mucilaginosa0.1021.07e-052.05e-05
genusFlavonifractor0.1011.14e-052.16e-05
speciesEubacterium_cylindroides-0.1011.14e-052.16e-05
speciesFlavonifractor_plautii0.1011.14e-052.16e-05
speciesLactobacillus_fermentum0.1011.21e-052.28e-05
orderBifidobacteriales-0.11.36e-052.54e-05
familyBifidobacteriaceae-0.11.36e-052.54e-05
speciesDialister_invisus-0.11.36e-052.54e-05
familyClostridiaceae0.0991.9e-053.53e-05
speciesCoprococcus_sp_ART55_1-0.0982.17e-054.02e-05
speciesBifidobacterium_catenulatum-0.0972.67e-054.92e-05
genusAcidaminococcaceae_unclassified-0.0962.99e-055.49e-05
orderCaudovirales-0.0963.3e-056.04e-05
genusDialister-0.0963.52e-056.41e-05
speciesAlistipes_sp_HGB5-0.0944.3e-057.81e-05
speciesDesulfovibrio_desulfuricans-0.0944.49e-058.12e-05
speciesLactobacillus_oris0.0944.57e-058.23e-05
speciesRuminococcus_lactaris-0.0944.66e-058.36e-05
speciesBacteroides_sp_3_1_190.0935.63e-050.000101
speciesEggerthella_unclassified0.0926.57e-050.000117
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0927.33e-050.00013
speciesLachnospiraceae_bacterium_6_1_63FAA0.0927.35e-050.00013
familyLachnospiraceae-0.0917.46e-050.000131
speciesLachnospiraceae_bacterium_2_1_58FAA0.0917.69e-050.000135
speciesBifidobacterium_longum-0.0918.35e-050.000146
speciesRoseburia_inulinivorans0.090.0001060.000185
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0880.0001330.000231
speciesAlistipes_shahii-0.0880.0001340.000232
speciesStreptococcus_vestibularis0.0880.000140.000241
speciesHoldemania_filiformis-0.0870.0001690.00029
genusHoldemania-0.0870.000170.000291
speciesLactobacillus_crispatus0.0870.0001740.000295
speciesParabacteroides_goldsteinii0.0870.0001740.000295
speciesDorea_unclassified-0.0860.0001930.000327
phylumViruses_noname-0.0860.0002050.000344
classViruses_noname-0.0860.0002050.000344
speciesLachnospiraceae_bacterium_1_1_57FAA0.0850.0002240.000375
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0850.0002390.000399
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0850.000250.000415
genusEggerthella0.0830.0003070.000508
speciesParabacteroides_sp_D13-0.0830.0003310.000546
genusPropionibacterium-0.0820.0003680.000605
speciesLactobacillus_plantarum0.0820.0003830.000628
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0820.0003980.00065
speciesLachnospiraceae_bacterium_9_1_43BFAA0.080.0005510.000897
classNegativicutes0.0790.0005810.000939
orderSelenomonadales0.0790.0005810.000939
speciesAcidaminococcus_unclassified-0.0790.0005970.000962
familyMicrococcaceae0.0780.0007290.00117
speciesCollinsella_tanakaei0.0780.000760.00122
genusRothia0.0780.0007740.00123
speciesStreptococcus_pasteurianus0.0770.0008290.00132
genusBurkholderiales_noname0.0770.0008590.00136
speciesBurkholderiales_bacterium_1_1_470.0770.0008590.00136
genusErysipelotrichaceae_noname-0.0760.0009880.00155
familyBurkholderiales_noname0.0760.001040.00163
speciesOdoribacter_laneus-0.0750.001130.00177
genusCatenibacterium-0.0740.001290.002
speciesCatenibacterium_mitsuokai-0.0740.001290.002
familyAcidaminococcaceae-0.0740.00130.00201
speciesAlistipes_putredinis-0.0740.001390.00214
speciesOscillibacter_sp_KLE_1728-0.0730.001480.00228
speciesBacteroides_sp_1_1_6-0.0720.001770.00271
speciesEubacterium_sp_3_1_31-0.0720.001960.00299
genusClostridiaceae_noname-0.0710.001990.00302
speciesClostridiaceae_bacterium_JC118-0.0710.001990.00302
speciesLachnospiraceae_bacterium_2_1_46FAA0.0710.002020.00306
genusGordonibacter-0.0710.002210.00332
speciesGordonibacter_pamelaeae-0.0710.002210.00332
genusParasutterella0.0710.002260.00338
speciesParasutterella_excrementihominis0.0710.002260.00338
speciesLactobacillus_vaginalis0.070.002620.0039
genusParabacteroides-0.0690.002650.00393
speciesLactococcus_phage_936_sensu_lato-0.0690.002670.00395
speciesBacteroides_salanitronis-0.0690.002680.00395
speciesClostridium_sp_ATCC_BAA_4420.0690.002710.00398
speciesHoldemania_unclassified-0.0690.002780.00408
genusClostridiales_noname0.0690.00280.00409
speciesClostridium_spiroforme-0.0680.003080.00449
speciesMegasphaera_elsdenii0.0680.003140.00456
familyBacteroidaceae0.0680.003280.00473
genusBacteroides0.0680.003280.00473
speciesBacteroides_coprophilus0.0670.003520.00507
speciesCoprococcus_eutactus-0.0660.004050.00581
genusDesulfovibrio-0.0660.004110.00588
speciesEubacterium_ventriosum-0.0650.004710.00672
speciesAcidaminococcus_fermentans0.0650.004760.00677
speciesLactobacillus_delbrueckii-0.0650.004940.007
speciesBacteroides_barnesiae-0.0640.005850.00827
speciesRuminococcus_callidus0.0640.00590.00831
speciesAnaerostipes_unclassified0.0630.006040.00848
speciesBacteroides_pectinophilus-0.0630.006370.00892
speciesRuminococcus_bromii-0.0630.006540.00913
genusLeuconostoc0.0620.007140.00994
speciesParaprevotella_xylaniphila-0.0620.007630.0106
speciesLactobacillus_acidophilus-0.0620.007650.0106
speciesAlistipes_finegoldii-0.0610.008640.0119
genusPhascolarctobacterium-0.060.008990.0123
speciesPhascolarctobacterium_succinatutens-0.060.008990.0123
speciesLactobacillus_gasseri0.060.009690.0133
classErysipelotrichia-0.0590.01050.0142
orderErysipelotrichales-0.0590.01050.0142
familyErysipelotrichaceae-0.0590.01050.0142
speciesStreptococcus_lutetiensis0.0590.01050.0142
familyOxalobacteraceae-0.0580.01150.0155
classBacteroidia0.0580.0120.0161
orderBacteroidales0.0580.0120.0161
phylumBacteroidetes0.0580.01210.0162
speciesEubacterium_biforme-0.0570.0130.0173
speciesAcidaminococcus_intestini0.0570.01380.0183
speciesLactococcus_phage_jm2-0.0560.01450.0192
speciesCollinsella_intestinalis0.0560.01570.0208
familyViruses_noname0.0550.01710.0225
genusViruses_noname0.0550.01710.0225
speciesGemella_morbillorum0.0550.01760.0231
genusOxalobacter-0.0550.01840.024
speciesOxalobacter_formigenes-0.0550.01840.024
speciesBacteroides_eggerthii0.0540.01990.0259
speciesStreptococcus_parasanguinis0.0530.02250.0292
speciesBilophila_unclassified0.0530.02310.0299
speciesBifidobacterium_breve0.0520.02340.0302
genusLachnospiraceae_noname-0.0510.02750.0354
speciesEubacterium_dolichum-0.0510.02780.0357
speciesBacteroides_sp_2_1_22-0.0510.02820.036
speciesBacteroides_dorei-0.0510.02820.036
speciesEubacterium_eligens0.0510.02840.0361
familySuccinivibrionaceae-0.050.02970.0377
genusBilophila0.0490.03260.0411
speciesLactococcus_phage_phi7-0.0490.03260.0411
speciesClostridium_sp_KLE_1755-0.0480.03680.0463
genusSuccinatimonas-0.0480.03960.0496
speciesSuccinatimonas_hippei-0.0480.03960.0496
speciesParabacteroides_unclassified-0.0480.03990.0498
genusRoseburia0.0470.04070.0507
speciesBacteroides_faecis0.0460.04680.0581
familyClostridiales_Family_XI_Incertae_Sedis0.0460.04850.0601
familyActinomycetaceae0.0450.050.0618
orderActinomycetales0.0450.05250.0647
speciesBacteroides_cellulosilyticus-0.0450.05370.066
orderViruses_noname-0.0440.05490.0673
genusSutterellaceae_unclassified0.0440.05510.0674
speciesBacteroides_caccae0.0430.06170.0753
speciesCoriobacteriaceae_bacterium_phI-0.0420.07260.0882
genusActinomyces0.0420.07270.0882
speciesBacteroides_sp_4_3_47FAA0.0410.07420.0898
speciesParvimonas_unclassified0.0410.07990.0965
genusParvimonas0.040.08030.0967
speciesParabacteroides_distasonis0.040.08130.0976
genusCoriobacteriaceae_noname-0.040.0870.104
speciesParaprevotella_clara-0.0390.08860.106
speciesParaprevotella_unclassified-0.0390.09190.11
speciesPeptostreptococcaceae_noname_unclassified0.0390.09350.111
speciesPorphyromonas_uenonis0.0380.1010.12
genusLactococcus0.0360.1180.14
genusParaprevotella-0.0360.1240.146
speciesLactococcus_lactis-0.0360.1240.146
speciesStreptococcus_mutans0.0350.1270.149
speciesParabacteroides_johnsonii0.0350.1290.151
speciesSutterella_parvirubra0.0340.1390.162
speciesLactobacillus_amylovorus0.0340.1460.17
speciesBacteroides_ovatus0.0330.150.174
speciesCollinsella_unclassified-0.0330.1580.183
speciesDesulfovibrio_piger-0.0330.1580.183
genusMethanosphaera-0.0320.1650.19
speciesMethanosphaera_stadtmanae-0.0320.1650.19
speciesLactobacillus_reuteri0.0320.170.195
classDeltaproteobacteria0.0310.1860.212
orderDesulfovibrionales0.0310.1860.212
familyDesulfovibrionaceae0.0310.1860.212
genusButyricimonas0.030.1880.213
speciesButyricimonas_synergistica0.030.1880.213
familyPodoviridae0.030.1940.22
speciesClostridium_sp_L2_50-0.0290.2040.23
genusSlackia0.0290.2110.238
speciesLactobacillus_casei_paracasei-0.0260.2560.288
speciesBilophila_wadsworthia0.0260.2570.288
speciesHoldemania_sp_AP20.0260.2580.289
orderAeromonadales0.0250.2750.307
speciesBifidobacterium_angulatum-0.0240.2950.328
speciesErysipelotrichaceae_bacterium_3_1_53-0.0230.3240.36
genusButyricicoccus-0.0210.3640.402
speciesButyricicoccus_pullicaecorum-0.0210.3640.402
speciesParabacteroides_sp_20_3-0.020.3850.425
genusFaecalibacterium0.0180.4390.482
speciesFaecalibacterium_prausnitzii0.0180.4390.482
speciesCoprobacillus_sp_D6-0.0180.4430.485
speciesBacteroides_clarus0.0170.4520.494
familySutterellaceae-0.0170.4690.511
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0160.4770.519
familyStaphylococcaceae0.0160.480.521
speciesRoseburia_intestinalis-0.0160.490.53
genusBlautia-0.0160.4920.531
speciesStreptococcus_phage_Sfi21-0.0150.5050.544
speciesBacteroides_fluxus0.0150.510.548
speciesAnaerotruncus_colihominis-0.0150.5290.567
speciesCoprobacillus_sp_29_1-0.0140.5330.57
genusTuricibacter-0.0130.5690.608
speciesPrevotella_bivia0.0130.5830.621
speciesBlautia_producta-0.0120.5940.631
speciesTuricibacter_unclassified-0.0120.6090.646
speciesLachnospiraceae_bacterium_1_4_56FAA0.0110.630.667
speciesClostridium_asparagiforme0.0110.6380.674
speciesDialister_succinatiphilus0.010.6590.694
speciesMitsuokella_multacida-0.010.6720.706
speciesRuminococcus_sp_JC3040.010.6770.709
speciesParabacteroides_merdae-0.010.6770.709
orderBurkholderiales-0.0090.6850.715
speciesEubacterium_limosum0.0090.6960.724
speciesClostridium_clostridioforme-0.0090.6960.724
speciesEggerthella_lenta-0.0090.7090.735
genusStaphylococcus0.0080.7350.761
genusPorphyromonas0.0080.7420.766
genusPeptoniphilus0.0070.7720.796
familyClostridiales_noname0.0060.780.802
speciesLactobacillus_ruminis-0.0060.7990.82
genusAcidaminococcus-0.0060.8050.824
classBetaproteobacteria-0.0050.820.838
speciesEggerthella_sp_1_3_56FAA-0.0050.8420.858
speciesTuricibacter_sanguinis0.0040.8460.861
speciesSlackia_piriformis0.0040.8680.881
speciesLactococcus_phage_bIL67-0.0040.8740.885
speciesBacteroides_vulgatus0.0020.9470.957
speciesLactobacillus_rhamnosus-0.0010.9510.959
speciesPeptostreptococcus_anaerobius-0.0010.9540.96
orderPseudomonadales-0.0010.9590.963
speciesPorphyromonas_asaccharolytica0.0010.9820.984
speciesBifidobacterium_bifidum0.00.9850.985
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01382744464620.001257544609820.000152456615845549818.4689
Type II diabetesDenmark752770.0002492850185590.0002930630991670.0338743985037625820.5133
Crohns diseaseSpain17660.01179439270380.0001158373927890.1324130905011489049.5096
ObesityDenmark1691230.0003471715967220.001135945352860.1934254760791076935.4115
Rheumatoid arthritisChina127980.007331035895460.006416863079770.2381542963241009433.6613
Colorectal cancerAustria64350.003543782315870.004897368010710.3683511637881425448.2271
Ulcerative colitisSpain78660.0003058362249180.0001158373927890.6209121364162203972.7024
Type II diabetesChina1831850.005610688389670.004130935649490.6842746315592469781.6187
Type II diabetesSweden53920.000802369949590.0001980209510890.7622016035672331678.957
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382