MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-12-09 17:54:33 PST
Job id & description: 2300, WP_007491232.1 MULTISPECIES: cyclase family protein [Clostridiales]
Query type: protein
Count queries & homologs: 1, 21
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
WP_007491232.12177250Lack 5'-endK07130COG1878unknownunknown100.096.84100.0
WP_007491232.12290073CompleteK07130COG1878unknownunknown100.099.796.74
WP_007491232.12306830CompleteK07130COG1878unknownunknown100.0100.094.96
WP_007491232.12338428Lack 5'-endK07130COG1878unknownunknown99.7100.087.5
WP_007491232.12301354CompleteK07130COG1878unknownunknown100.0100.082.2
WP_007491232.12335264CompleteK07130COG1878unknownunknown100.0100.081.9
WP_007491232.12408194Lack 5'-endK07130COG1878unknownunknown97.92100.081.82
WP_007491232.12321953CompleteK07130COG1878unknownunknown99.1199.480.24
WP_007491232.12320951CompleteK07130COG1878unknownunknown99.1199.479.64
WP_007491232.12320884CompleteK07130COG1878unknownunknown99.1199.478.44
WP_007491232.12744225CompleteK07130COG1878Firmicutesunknown90.586.5638.11
WP_007491232.12161689Lack 5'-endK07130COG1878Firmicutesunknown90.575.6438.11
WP_007491232.13074455CompleteK07130COG1878unknownunknown92.2895.0736.86
WP_007491232.13096658Lack 5'-endK07130COG1878unknownunknown92.2895.4136.86
WP_007491232.12746184CompleteK07130COG1878Firmicutesunknown90.586.5637.46
WP_007491232.12747985CompleteK07130COG1878Firmicutesunknown90.586.5637.13
WP_007491232.12747683CompleteK07130COG1878Firmicutesunknown90.586.5637.46
WP_007491232.14282654Lack 5'-endK07130COG1878unknownunknown76.8599.0937.45
WP_007491232.13210808Lack 5'-endK07130COG1878unknownunknown90.594.9333.22
WP_007491232.12624934CompleteK07130COG1878unknownunknown90.583.7134.09
WP_007491232.13468020CompleteK07130COG1878unknownunknown88.1396.5430.54
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusFlavonifractor0.5211.86e-1304.39e-128
speciesFlavonifractor_plautii0.5211.86e-1304.39e-128
familyClostridiales_noname0.4894.75e-1137.47e-111
speciesClostridium_bolteae0.4451.19e-911.4e-89
speciesClostridium_hathewayi0.4142.51e-782.37e-76
speciesClostridium_symbiosum0.4113.86e-773.04e-75
genusEggerthella0.418.27e-775.58e-75
speciesEggerthella_unclassified0.4021.54e-739.09e-72
genusBlautia0.3742.51e-631.32e-61
speciesClostridiales_bacterium_1_7_47FAA0.3662.59e-601.22e-58
familyClostridiaceae0.3451.94e-538.32e-52
speciesClostridium_citroniae0.3438.16e-533.21e-51
genusClostridium0.3377.49e-512.72e-49
speciesEggerthella_lenta0.3347e-502.36e-48
speciesClostridium_asparagiforme0.3284.27e-481.34e-46
speciesClostridium_clostridioforme0.3215.2e-461.53e-44
speciesRuminococcus_torques0.326.96e-461.93e-44
speciesRuminococcus_gnavus0.3183.13e-458.21e-44
genusCoprobacillus0.3161.14e-442.83e-43
speciesAnaerotruncus_colihominis0.3082.82e-426.66e-41
genusClostridiales_noname0.3028.02e-411.8e-39
speciesLachnospiraceae_bacterium_1_4_56FAA0.2955.44e-391.17e-37
speciesErysipelotrichaceae_bacterium_2_2_44A0.2957.48e-391.54e-37
genusHoldemania0.2892.83e-375.57e-36
speciesCoprobacillus_unclassified0.2812.18e-354.12e-34
speciesLachnospiraceae_bacterium_5_1_57FAA0.2772.47e-344.48e-33
speciesAnaerostipes_unclassified0.263.1e-305.42e-29
speciesBlautia_producta0.2571.73e-292.92e-28
orderCoriobacteriales0.254.37e-286.88e-27
familyCoriobacteriaceae0.254.37e-286.88e-27
genusLachnospiraceae_noname0.254.92e-287.49e-27
speciesClostridium_ramosum0.2464.36e-276.43e-26
genusAnaerostipes0.2456.09e-278.71e-26
speciesErysipelotrichaceae_bacterium_6_1_450.235.78e-248.02e-23
familyOscillospiraceae0.236.17e-248.09e-23
genusOscillibacter0.236.17e-248.09e-23
speciesClostridium_sp_ATCC_BAA_4420.2256.59e-238.41e-22
speciesLachnospiraceae_bacterium_5_1_63FAA0.2249.77e-231.21e-21
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2231.96e-222.37e-21
speciesHaemophilus_parainfluenzae-0.2191.15e-211.36e-20
genusHaemophilus-0.2181.36e-211.57e-20
orderPasteurellales-0.2181.76e-211.93e-20
familyPasteurellaceae-0.2181.76e-211.93e-20
speciesBlautia_hydrogenotrophica0.2172.14e-212.3e-20
classErysipelotrichia0.2172.44e-212.45e-20
orderErysipelotrichales0.2172.44e-212.45e-20
familyErysipelotrichaceae0.2172.44e-212.45e-20
speciesEubacterium_hallii0.2163.2e-213.15e-20
speciesOscillibacter_unclassified0.2148e-217.71e-20
speciesLachnospiraceae_bacterium_2_1_58FAA0.2148.27e-217.75e-20
phylumActinobacteria0.2148.54e-217.75e-20
classActinobacteria0.2148.54e-217.75e-20
speciesLachnospiraceae_bacterium_7_1_58FAA0.2097.12e-206.34e-19
speciesEubacterium_dolichum0.2044.22e-193.69e-18
speciesLachnospiraceae_bacterium_6_1_63FAA0.2039.21e-197.9e-18
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2011.79e-181.51e-17
speciesSubdoligranulum_sp_4_3_54A2FAA0.1977.04e-185.83e-17
speciesRuminococcus_sp_5_1_39BFAA0.1977.75e-186.31e-17
genusBilophila0.1951.92e-171.54e-16
speciesErysipelotrichaceae_bacterium_21_30.1934.48e-173.52e-16
genusClostridiaceae_noname0.1926.09e-174.64e-16
speciesClostridiaceae_bacterium_JC1180.1926.09e-174.64e-16
speciesBilophila_unclassified0.1918.75e-176.56e-16
classDeltaproteobacteria0.1891.83e-161.31e-15
orderDesulfovibrionales0.1891.83e-161.31e-15
familyDesulfovibrionaceae0.1891.83e-161.31e-15
speciesHoldemania_filiformis0.1882.66e-161.87e-15
speciesBilophila_wadsworthia0.1864.45e-163.09e-15
speciesEubacterium_limosum0.1864.89e-163.35e-15
genusGordonibacter0.1858.81e-165.86e-15
speciesGordonibacter_pamelaeae0.1858.81e-165.86e-15
speciesClostridium_nexile0.1761.62e-141.06e-13
speciesCoprococcus_sp_ART55_1-0.1761.71e-141.11e-13
speciesEubacterium_ramulus0.171.34e-138.55e-13
speciesEubacterium_sp_3_1_310.1682.98e-131.88e-12
speciesRuminococcus_obeum0.1673.33e-132.07e-12
speciesErysipelotrichaceae_bacterium_3_1_530.1594.03e-122.47e-11
familyStreptococcaceae0.1551.46e-118.83e-11
genusStreptococcus0.1542.29e-111.37e-10
speciesEscherichia_coli0.1523.87e-112.28e-10
speciesLactobacillus_ruminis-0.1524e-112.33e-10
genusEscherichia0.156.73e-113.87e-10
speciesAlistipes_senegalensis-0.157.29e-114.15e-10
speciesClostridium_bartlettii0.1491.03e-105.79e-10
speciesDorea_formicigenerans0.1481.44e-108e-10
genusErysipelotrichaceae_noname0.1462.13e-101.17e-09
orderBifidobacteriales0.1462.52e-101.35e-09
familyBifidobacteriaceae0.1462.52e-101.35e-09
genusBifidobacterium0.1443.65e-101.94e-09
genusDorea0.1443.85e-102.02e-09
familyPrevotellaceae-0.1444.23e-102.19e-09
speciesAlistipes_shahii-0.1444.32e-102.22e-09
genusActinomyces0.1435.37e-102.73e-09
genusRuminococcus0.1435.63e-102.83e-09
speciesBifidobacterium_longum0.1418.37e-104.16e-09
familyActinomycetaceae0.1391.39e-096.83e-09
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1391.58e-097.69e-09
speciesAnaerostipes_hadrus0.1391.61e-097.75e-09
speciesClostridium_leptum0.1391.74e-098.3e-09
speciesStreptococcus_thermophilus0.1354.36e-092.06e-08
genusCoriobacteriaceae_noname0.1282.77e-081.29e-07
speciesCoriobacteriaceae_bacterium_phI0.1273.26e-081.51e-07
familyBacteroidales_noname-0.1255.55e-082.49e-07
genusBacteroidales_noname-0.1255.55e-082.49e-07
speciesBacteroidales_bacterium_ph8-0.1255.55e-082.49e-07
speciesBacteroides_fragilis0.1256.61e-082.94e-07
speciesHoldemania_sp_AP20.1247.27e-083.21e-07
familyLachnospiraceae0.1239.27e-084.05e-07
genusPeptoniphilus0.1221.14e-074.94e-07
genusRuminococcaceae_noname0.1211.38e-075.87e-07
speciesRuminococcaceae_bacterium_D160.1211.38e-075.87e-07
speciesLactobacillus_delbrueckii0.1211.42e-075.98e-07
speciesRuminococcus_callidus-0.1211.6e-076.67e-07
speciesOdoribacter_splanchnicus-0.1211.61e-076.67e-07
speciesEubacterium_eligens-0.121.86e-077.63e-07
orderEnterobacteriales0.1192.53e-071.02e-06
familyEnterobacteriaceae0.1192.53e-071.02e-06
familyBacteroidaceae0.1192.75e-071.09e-06
genusBacteroides0.1192.75e-071.09e-06
genusButyricicoccus0.1182.93e-071.14e-06
speciesButyricicoccus_pullicaecorum0.1182.93e-071.14e-06
familyPeptostreptococcaceae0.1173.52e-071.36e-06
genusSolobacterium0.1173.72e-071.42e-06
speciesSolobacterium_moorei0.1173.72e-071.42e-06
speciesStreptococcus_salivarius0.1173.76e-071.42e-06
speciesOscillibacter_sp_KLE_17450.1164.67e-071.75e-06
speciesButyrivibrio_crossotus-0.1138.95e-073.33e-06
genusOdoribacter-0.1131.07e-063.95e-06
orderLactobacillales0.1121.11e-064.06e-06
familyFusobacteriaceae0.1111.39e-065.05e-06
classBacilli0.1111.52e-065.48e-06
genusButyrivibrio-0.1111.59e-065.69e-06
genusPeptostreptococcaceae_noname0.111.88e-066.67e-06
genusAnaerotruncus0.111.96e-066.9e-06
genusFusobacterium0.112.06e-067.2e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1092.42e-068.4e-06
phylumFusobacteria0.1082.91e-069.88e-06
classFusobacteriia0.1082.91e-069.88e-06
orderFusobacteriales0.1082.91e-069.88e-06
speciesClostridium_sp_KLE_17550.1064.59e-061.55e-05
speciesPropionibacterium_freudenreichii0.1064.83e-061.62e-05
speciesCoprococcus_eutactus-0.1055.09e-061.69e-05
speciesPrevotella_bivia0.1055.72e-061.89e-05
genusAdlercreutzia0.1055.86e-061.91e-05
speciesAdlercreutzia_equolifaciens0.1055.86e-061.91e-05
speciesClostridium_sp_L2_50-0.1045.98e-061.93e-05
genusMitsuokella-0.1046.66e-062.14e-05
speciesPrevotella_copri-0.1046.84e-062.18e-05
speciesMitsuokella_unclassified-0.1037.71e-062.44e-05
speciesRoseburia_hominis-0.1037.9e-062.49e-05
speciesFusobacterium_varium0.1038.54e-062.67e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.1029.74e-063.02e-05
speciesFusobacterium_ulcerans0.1011.22e-053.76e-05
genusPrevotella-0.11.38e-054.23e-05
speciesEubacterium_biforme-0.0991.71e-055.21e-05
speciesCoprobacillus_sp_29_10.0982.4e-057.26e-05
speciesAlistipes_finegoldii-0.0972.63e-057.91e-05
familyBacillales_noname0.0962.97e-058.82e-05
genusGemella0.0962.97e-058.82e-05
speciesStreptococcus_australis0.0963.48e-050.000103
genusOxalobacter-0.0953.9e-050.000114
speciesOxalobacter_formigenes-0.0953.9e-050.000114
speciesBacteroides_coprophilus-0.0935.48e-050.000159
speciesEubacterium_rectale-0.0935.95e-050.000171
familySutterellaceae-0.0926.75e-050.000193
familyOxalobacteraceae-0.0926.81e-050.000194
orderBacillales0.0917.52e-050.000213
speciesLachnospiraceae_bacterium_1_1_57FAA0.099.9e-050.000276
familyEnterococcaceae0.099.95e-050.000276
speciesLachnospiraceae_bacterium_8_1_57FAA-0.099.95e-050.000276
speciesAlistipes_putredinis-0.090.0001010.000279
genusLeuconostoc0.090.0001040.000285
speciesParaprevotella_xylaniphila-0.0890.0001220.000333
speciesMethanobrevibacter_smithii-0.0890.0001240.000336
orderBurkholderiales-0.0870.0001530.000413
speciesPrevotella_stercorea-0.0870.0001560.000418
genusEnterococcus0.0870.0001570.000419
classBetaproteobacteria-0.0870.0001710.000453
speciesStreptococcus_sanguinis0.0870.0001740.000459
genusFaecalibacterium-0.0860.00020.000518
speciesFaecalibacterium_prausnitzii-0.0860.00020.000518
genusActinobacillus-0.0860.0002010.000518
speciesActinobacillus_unclassified-0.0860.0002010.000518
speciesMitsuokella_multacida-0.0860.0002060.000528
speciesBifidobacterium_pseudocatenulatum0.0860.0002110.000538
classMethanobacteria-0.0850.0002330.000584
orderMethanobacteriales-0.0850.0002330.000584
familyMethanobacteriaceae-0.0850.0002330.000584
speciesVeillonella_unclassified-0.0850.0002340.000584
classClostridia0.0850.000240.000593
orderClostridiales0.0850.000240.000593
genusMethanobrevibacter-0.0830.0003260.000801
speciesHoldemania_unclassified0.0830.0003280.000802
phylumEuryarchaeota-0.0830.0003420.000832
genusParaprevotella-0.0830.000350.000847
speciesParaprevotella_unclassified-0.0810.0004560.0011
orderActinomycetales0.080.000510.00122
speciesEubacterium_siraeum-0.080.0005740.00137
speciesBifidobacterium_angulatum-0.0790.0006250.00148
speciesCoprobacillus_sp_D60.0790.0006590.00156
speciesEscherichia_unclassified0.0790.0006760.00159
genusBarnesiella-0.0780.000720.00167
speciesBarnesiella_intestinihominis-0.0780.000720.00167
phylumBacteroidetes-0.0780.0007380.00169
classBacteroidia-0.0780.0007390.00169
orderBacteroidales-0.0780.0007390.00169
speciesSutterella_wadsworthensis-0.0780.0007440.0017
genusPeptostreptococcus0.0780.0007480.0017
speciesCollinsella_tanakaei0.0750.001090.00246
genusPhascolarctobacterium-0.0750.001260.00282
speciesPhascolarctobacterium_succinatutens-0.0750.001260.00282
genusLactococcus0.0740.001270.00283
speciesCampylobacter_concisus-0.0740.001450.00321
speciesRoseburia_inulinivorans-0.0720.001710.00377
speciesVeillonella_atypica-0.0720.001730.0038
speciesKlebsiella_unclassified0.0720.001790.00391
speciesParaprevotella_clara-0.0720.001920.00418
genusCatenibacterium-0.0720.001950.0042
speciesCatenibacterium_mitsuokai-0.0720.001950.0042
genusParvimonas0.070.002330.005
speciesStreptococcus_mutans0.070.002340.005
speciesParvimonas_unclassified0.070.002390.00508
genusSutterella-0.0690.002650.00561
speciesCoprococcus_comes0.0690.002680.00565
genusCoprobacter-0.0690.002760.00576
speciesCoprobacter_fastidiosus-0.0690.002760.00576
speciesGemella_morbillorum0.0680.003280.00682
speciesLactococcus_lactis0.0680.003350.00694
speciesBacteroides_pectinophilus-0.0670.003580.00738
genusVeillonella-0.0670.00380.0078
speciesRuminococcus_champanellensis-0.0670.003820.00781
speciesBifidobacterium_animalis0.0670.003880.00789
genusPseudoflavonifractor0.0660.004240.00855
speciesPseudoflavonifractor_capillosus0.0660.004240.00855
speciesPorphyromonas_uenonis0.0650.00510.0102
genusPorphyromonas0.0640.005270.0105
genusParasutterella-0.0640.005510.0109
speciesParasutterella_excrementihominis-0.0640.005510.0109
genusCollinsella0.0640.005670.0112
speciesBacteroides_thetaiotaomicron0.0630.006660.0131
familyLeuconostocaceae0.0630.006720.0132
speciesPeptostreptococcus_anaerobius0.0620.006960.0136
speciesParabacteroides_merdae-0.0620.00710.0138
speciesStreptococcus_parasanguinis0.0620.007410.0143
genusAggregatibacter-0.0620.007520.0145
speciesVeillonella_dispar-0.0610.008370.016
speciesAlistipes_sp_AP110.0610.008390.016
speciesEnterococcus_faecalis0.060.009070.0173
phylumFirmicutes0.0590.01040.0197
speciesMegasphaera_elsdenii-0.0590.01050.0198
classGammaproteobacteria0.0590.01080.0202
speciesPorphyromonas_asaccharolytica0.0590.01080.0202
speciesCollinsella_intestinalis0.0570.01340.025
speciesAnaerotruncus_unclassified-0.0570.01390.0258
genusPropionibacterium0.0560.01590.0294
speciesBacteroides_ovatus0.0550.01640.0302
speciesAlistipes_unclassified0.0550.01710.0314
speciesEnterococcus_faecium0.0550.01730.0316
speciesParabacteroides_distasonis0.0540.02030.037
speciesBacteroides_uniformis0.0530.02070.0376
speciesStreptococcus_phage_Sfi210.0520.02330.042
speciesParabacteroides_unclassified0.0520.02330.042
genusMethanosphaera-0.0520.02370.0424
speciesMethanosphaera_stadtmanae-0.0520.02370.0424
speciesDialister_invisus0.0520.02380.0424
speciesVeillonella_parvula-0.0510.02690.0477
familyStaphylococcaceae0.0510.0280.0495
speciesLactobacillus_casei_paracasei0.0510.02860.0504
speciesClostridium_spiroforme0.050.02930.0514
speciesDorea_longicatena0.050.02940.0514
speciesLactobacillus_plantarum0.050.02990.0521
speciesAggregatibacter_segnis-0.050.03180.055
speciesMethanobrevibacter_unclassified-0.050.03180.055
speciesHaemophilus_paraphrohaemolyticus-0.050.0320.0551
genusMorganella0.0490.03240.0554
speciesMorganella_morganii0.0490.03240.0554
speciesBacteroides_faecis-0.0490.03250.0554
speciesLactobacillus_acidophilus0.0490.03460.0587
genusParabacteroides0.0490.03540.0599
speciesRuminococcus_bromii0.0490.03570.0602
speciesParabacteroides_johnsonii0.0480.03910.0657
genusSiphoviridae_noname0.0470.04370.0731
speciesLactobacillus_mucosae-0.0460.04540.0757
genusStaphylococcus0.0460.0460.0765
speciesPeptostreptococcus_stomatis0.0460.0470.0778
speciesOdoribacter_unclassified0.0460.04860.0801
genusButyricimonas-0.0460.04890.0801
speciesButyricimonas_synergistica-0.0460.04890.0801
speciesAlistipes_sp_HGB5-0.0460.04910.0802
phylumProteobacteria0.0450.0510.083
speciesBacteroides_intestinalis-0.0450.05210.0845
speciesBacteroides_plebeius-0.0440.05860.0947
speciesLactococcus_phage_bIL670.0430.06550.106
speciesClostridium_perfringens-0.0410.07790.125
genusSlackia0.040.08090.129
speciesBacteroides_oleiciplenus0.040.08180.13
familyRikenellaceae-0.040.08220.13
genusAlistipes-0.040.08220.13
classEpsilonproteobacteria-0.040.08470.133
orderCampylobacterales-0.040.08470.133
speciesMegamonas_funiformis-0.0390.08810.138
genusEnterobacter-0.0390.08980.14
genusDialister0.0390.09080.141
speciesBacteroides_massiliensis-0.0390.09220.143
speciesOdoribacter_laneus0.0390.09240.143
speciesStreptococcus_pasteurianus0.0390.09480.146
speciesEnterobacter_cloacae-0.0390.09480.146
speciesDesulfovibrio_piger-0.0390.09560.146
speciesSlackia_piriformis0.0390.09580.146
speciesEubacterium_cylindroides0.0380.09890.151
classNegativicutes-0.0370.1060.16
orderSelenomonadales-0.0370.1060.16
genusAcidaminococcus0.0370.1110.167
speciesHaemophilus_sputorum-0.0370.1130.169
speciesStreptococcus_vestibularis0.0370.1130.169
speciesStreptococcus_infantarius0.0360.1150.172
speciesStreptococcus_anginosus0.0360.1180.176
speciesBacteroides_vulgatus-0.0350.1270.189
genusCampylobacter-0.0350.1280.189
genusMegasphaera-0.0350.1340.198
speciesPrevotella_buccae-0.0340.1390.204
speciesStreptococcus_lutetiensis0.0340.1410.206
speciesParabacteroides_sp_D13-0.0340.1410.206
speciesAcidaminococcus_unclassified0.0340.1430.208
speciesPeptostreptococcaceae_noname_unclassified-0.0330.1490.216
orderAeromonadales-0.0330.1520.22
familyCampylobacteraceae-0.0330.1550.224
genusBurkholderiales_noname-0.0330.1560.224
speciesBurkholderiales_bacterium_1_1_47-0.0330.1560.224
speciesCollinsella_unclassified0.0330.1580.226
speciesLactococcus_garvieae0.0330.1590.227
genusTuricibacter-0.0320.1610.229
speciesSutterella_parvirubra0.0320.1630.231
familyBurkholderiales_noname-0.0320.1690.239
familyPropionibacteriaceae0.0310.1770.249
speciesBacteroides_dorei0.0310.1780.25
familyRuminococcaceae0.0310.1790.251
speciesProteus_mirabilis0.0310.1820.254
speciesBifidobacterium_dentium0.030.1910.266
speciesEnterobacter_aerogenes-0.030.1950.271
speciesCoprococcus_catus0.0290.2130.295
speciesLactococcus_phage_jm20.0290.2180.301
speciesLactococcus_phage_P6800.0280.2320.319
genusRoseburia-0.0280.2330.32
speciesTuricibacter_sanguinis-0.0260.2660.364
speciesKlebsiella_oxytoca-0.0250.2750.375
speciesLeuconostoc_lactis0.0250.2840.386
speciesTuricibacter_unclassified-0.0240.290.393
speciesBifidobacterium_adolescentis-0.0240.2970.402
speciesBacteroides_finegoldii-0.0240.3020.407
familyAcidaminococcaceae-0.0240.3050.41
orderViruses_noname0.0230.3220.432
speciesBacteroides_salyersiae0.0230.3260.436
speciesLactobacillus_crispatus0.0230.330.44
speciesBacteroides_clarus0.0220.3410.452
phylumSynergistetes-0.0220.3440.452
classSynergistia-0.0220.3440.452
orderSynergistales-0.0220.3440.452
familySynergistaceae-0.0220.3440.452
speciesAcidaminococcus_intestini0.0210.3540.464
speciesLactobacillus_rhamnosus0.0210.3570.467
speciesLactobacillus_amylovorus0.0210.3610.471
speciesEnterobacteria_phage_HK5440.0210.3640.472
speciesCollinsella_aerofaciens0.0210.3640.472
speciesLachnospiraceae_bacterium_3_1_46FAA0.0210.3660.473
speciesMegasphaera_unclassified-0.0210.3720.48
speciesStreptococcus_gordonii0.020.3790.487
speciesBacteroides_xylanisolvens0.020.3820.49
familyVeillonellaceae-0.020.3830.49
genusPyramidobacter-0.020.3920.499
speciesPyramidobacter_piscolens-0.020.3920.499
genusTunalikevirus-0.020.3950.501
speciesButyrivibrio_unclassified-0.0190.4090.516
genusSuccinatimonas-0.0190.410.516
speciesSuccinatimonas_hippei-0.0190.410.516
speciesMegamonas_hypermegale-0.0190.4140.52
speciesWeissella_confusa-0.0190.4180.523
speciesBacteroides_sp_3_1_190.0180.4240.529
speciesBacteroides_stercoris0.0180.4260.531
speciesRoseburia_intestinalis-0.0180.4280.532
phylumViruses_noname0.0180.4310.533
classViruses_noname0.0180.4310.533
genusCoprococcus-0.0180.4430.546
familySuccinivibrionaceae-0.0170.4510.554
speciesBacteroides_sp_4_3_47FAA-0.0170.4550.556
speciesDesulfovibrio_desulfuricans0.0170.4550.556
speciesOscillibacter_sp_KLE_1728-0.0170.4560.556
speciesLactococcus_phage_936_sensu_lato-0.0170.4620.562
speciesFusobacterium_mortiferum0.0170.4640.563
speciesWeissella_cibaria-0.0160.4760.576
genusKlebsiella0.0150.5040.608
genusMyoviridae_noname0.0150.5110.614
speciesBifidobacterium_breve0.0150.5110.614
speciesC2likevirus_unclassified-0.0150.5130.615
speciesLactobacillus_sanfranciscensis-0.0150.5250.627
speciesMegamonas_rupellensis0.0150.5260.627
speciesRuminococcus_lactaris-0.0140.5350.636
genusC2likevirus-0.0140.5390.639
speciesLactobacillus_salivarius-0.0140.5410.64
speciesRoseburia_unclassified-0.0130.5610.662
genusPantoea0.0130.5660.663
genusDesulfovibrio0.0130.5660.663
speciesPantoea_unclassified0.0130.5660.663
genusProteus0.0130.5730.669
speciesBacteroides_fluxus-0.0130.5760.671
familyPorphyromonadaceae0.0130.5780.671
genusCitrobacter0.0130.5790.671
speciesParabacteroides_sp_20_3-0.0120.5930.685
speciesLactobacillus_vaginalis0.0120.5940.685
speciesFusobacterium_nucleatum-0.0120.6090.701
speciesLactococcus_phage_phi7-0.0120.6110.702
speciesCitrobacter_freundii0.0120.6130.702
speciesKlebsiella_phage_KP36-0.0110.6220.71
speciesBacteroides_cellulosilyticus-0.0110.6230.71
speciesRuminococcus_sp_JC3040.0110.6240.71
speciesAlistipes_onderdonkii0.0110.6270.711
speciesKlebsiella_sp_MS_92_3-0.0110.6490.734
speciesParabacteroides_goldsteinii0.010.650.734
familyViruses_noname-0.010.6610.743
genusViruses_noname-0.010.6610.743
speciesDialister_succinatiphilus-0.010.6670.748
speciesLactobacillus_oris-0.010.6730.753
speciesBacteroides_sp_2_1_22-0.0090.6910.769
familySiphoviridae0.0090.6980.769
genusSutterellaceae_unclassified-0.0090.70.769
phylumVerrucomicrobia0.0090.7020.769
classVerrucomicrobiae0.0090.7020.769
orderVerrucomicrobiales0.0090.7020.769
familyVerrucomicrobiaceae0.0090.7020.769
genusAkkermansia0.0090.7020.769
speciesAkkermansia_muciniphila0.0090.7020.769
orderCaudovirales0.0090.7070.772
familyLactobacillaceae0.0090.7110.775
speciesBacteroides_salanitronis-0.0080.7250.787
speciesBacteroides_caccae-0.0080.7250.787
speciesMegasphaera_micronuciformis-0.0080.7360.797
speciesBacteroides_coprocola-0.0070.7530.813
familyEubacteriaceae-0.0070.7640.823
genusEubacterium-0.0070.7670.825
speciesEubacterium_ventriosum0.0070.7780.835
genusSubdoligranulum0.0060.7820.837
genusOlsenella0.0060.7860.839
familyMyoviridae0.0060.7890.841
speciesCitrobacter_unclassified-0.0060.8020.852
orderPseudomonadales-0.0060.8030.852
speciesBacteroides_sp_1_1_60.0060.8080.855
speciesSubdoligranulum_unclassified-0.0060.8120.857
speciesBacteroides_barnesiae0.0050.8250.869
speciesBacteroides_nordii0.0050.8310.874
speciesLactobacillus_fermentum-0.0040.8490.891
familyPodoviridae0.0040.8620.902
speciesAcidaminococcus_fermentans0.0040.8720.911
speciesOlsenella_unclassified-0.0040.8750.912
speciesBacteroides_eggerthii-0.0040.8780.912
speciesBifidobacterium_catenulatum-0.0040.880.912
speciesAlistipes_indistinctus0.0030.8810.912
genusLactobacillus0.0030.8830.912
speciesBifidobacterium_bifidum-0.0030.9060.934
speciesDorea_unclassified-0.0030.9080.934
genusWeissella0.0030.9130.937
speciesLactobacillus_reuteri0.0020.9230.945
speciesEggerthella_sp_1_3_56FAA-0.0020.9340.953
speciesStreptococcus_mitis_oralis_pneumoniae0.0020.9350.953
speciesRothia_mucilaginosa-0.0020.9420.958
genusLambdalikevirus0.0010.9510.963
speciesLactobacillus_gasseri-0.0010.9510.963
genusAcidaminococcaceae_unclassified0.0010.9530.963
genusMegamonas0.0010.9580.966
familyMicrococcaceae-0.0010.9630.969
speciesKlebsiella_pneumoniae0.0010.970.974
speciesMegamonas_unclassified0.0010.9720.974
genusRothia-0.0010.9820.982
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.01699076334070.005901920555750.00023984161313426438.78803
Ulcerative colitisSpain78660.00772567766430.005901920555750.0057424324063513794.54905
Type II diabetesChina1831850.009455408879510.00899986271550.0096412847122365212.0691
Type II diabetesDenmark752770.00476026637970.003904850812260.0226656302088546317.9074
Rheumatoid arthritisChina127980.007182544782620.005516852274380.028046126725221097.03305
ObesityDenmark1691230.004268435063060.003346884055910.0887168660174682622.4458
Colorectal cancerAustria64350.009405251276880.006567364132730.3777931978551447348.9681
Liver cirrhosisChina1201140.006831910784360.006451788144440.7009620785532673489.8048
Type II diabetesSweden53920.007757300528220.007452268120910.8479814342232546786.2411
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382