MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-12-12 07:00:35 PST
Job id & description: 2309, E. coli fnr sequence
Query type: dna
Count queries & homologs: 1, 13
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
Ecoli_fnr3328193CompleteK01420COG0664ProteobacteriaEscherichia100.092.9698.54
Ecoli_fnr3215189CompleteK01420COG0664ProteobacteriaCitrobacter99.4790.1390.52
Ecoli_fnr3668822CompleteK01420COG0664ProteobacteriaEscherichia100.0100.089.77
Ecoli_fnr3134196CompleteK01420COG0664ProteobacteriaCitrobacter99.4788.5387.05
Ecoli_fnr3666134CompleteK01420COG0664ProteobacteriaEnterobacter93.4993.4987.36
Ecoli_fnr3666003CompleteK01420COG0664ProteobacteriaEnterobacter93.4993.4987.36
Ecoli_fnr3655232CompleteK01420COG0664ProteobacteriaKlebsiella100.0100.085.92
Ecoli_fnr3592655CompleteK01420COG0664ProteobacteriaEnterobacter93.4992.0386.93
Ecoli_fnr3668723CompleteK01420COG0664ProteobacteriaEnterobacter100.0100.085.26
Ecoli_fnr3665927CompleteK01420COG0664ProteobacteriaEnterobacter95.6295.6285.28
Ecoli_fnr3664857CompleteK01420COG0664ProteobacteriaKlebsiella99.0799.0784.58
Ecoli_fnr3623606CompleteK01420COG0664ProteobacteriaEnterobacter93.7693.0283.45
Ecoli_fnr3393833CompleteK01420COG0664Proteobacteriaunknown95.0989.7282.43
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.880.00.0
orderEnterobacteriales0.9330.00.0
familyEnterobacteriaceae0.9330.00.0
genusEscherichia0.9180.00.0
speciesEscherichia_coli0.8960.00.0
phylumProteobacteria0.6911.88e-2651.48e-263
speciesEscherichia_unclassified0.5765.92e-1663.99e-164
genusKlebsiella0.5174.7e-1282.77e-126
speciesKlebsiella_pneumoniae0.4818.16e-1094.28e-107
genusPantoea0.4533.48e-951.49e-93
speciesPantoea_unclassified0.4533.48e-951.49e-93
genusEnterobacter0.4051.3e-745.11e-73
speciesEnterobacter_cloacae0.4012.51e-739.11e-72
genusCitrobacter0.3491.55e-545.23e-53
speciesRuminococcus_gnavus0.3473.47e-541.09e-52
speciesCitrobacter_unclassified0.3352.65e-507.82e-49
familyFusobacteriaceae0.331.14e-483.17e-47
speciesCitrobacter_freundii0.3291.91e-485.01e-47
genusFusobacterium0.3246.62e-471.64e-45
phylumFusobacteria0.3221.86e-463.99e-45
classFusobacteriia0.3221.86e-463.99e-45
orderFusobacteriales0.3221.86e-463.99e-45
speciesClostridium_nexile0.3136.77e-441.39e-42
genusCoprobacillus0.2972.44e-394.8e-38
speciesKlebsiella_oxytoca0.2812.79e-355.27e-34
speciesClostridium_bolteae0.2813.27e-355.94e-34
speciesSubdoligranulum_unclassified-0.2732.02e-333.53e-32
speciesCoprobacillus_unclassified0.2732.42e-334.08e-32
speciesClostridium_hathewayi0.2692.86e-324.65e-31
genusSubdoligranulum-0.2669.76e-321.54e-30
speciesClostridium_ramosum0.2661.44e-312.19e-30
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2636.33e-319.34e-30
speciesEubacterium_siraeum-0.2571.3e-291.86e-28
speciesKlebsiella_unclassified0.2547.41e-291.03e-27
genusWeissella0.2531.3e-281.75e-27
genusEnterococcus0.2512.29e-283e-27
familyEnterococcaceae0.254.47e-285.7e-27
genusButyrivibrio-0.2499.96e-281.24e-26
speciesAnaerotruncus_unclassified-0.2365.21e-256.31e-24
familyClostridiaceae0.235.84e-246.89e-23
speciesClostridium_symbiosum0.237.45e-248.58e-23
speciesWeissella_confusa0.238.68e-249.75e-23
speciesFusobacterium_ulcerans0.2291.2e-231.32e-22
genusCoprococcus-0.2272.79e-232.99e-22
genusClostridium0.2263.63e-233.81e-22
genusMegasphaera0.2256.65e-236.82e-22
speciesEubacterium_ramulus-0.2181.5e-211.51e-20
speciesEubacterium_rectale-0.2172.25e-212.21e-20
speciesBacteroides_fragilis0.2163.04e-212.93e-20
speciesClostridium_perfringens0.2155.72e-215.4e-20
genusPseudoflavonifractor-0.2147.13e-216.47e-20
speciesPseudoflavonifractor_capillosus-0.2147.13e-216.47e-20
familyLeuconostocaceae0.2147.91e-217.04e-20
genusBarnesiella-0.2149.98e-218.56e-20
speciesBarnesiella_intestinihominis-0.2149.98e-218.56e-20
familyRuminococcaceae-0.2131.35e-201.14e-19
speciesSutterella_wadsworthensis-0.2122.35e-201.95e-19
speciesStreptococcus_anginosus0.2112.86e-202.33e-19
genusEubacterium-0.214.09e-203.27e-19
familyEubacteriaceae-0.214.24e-203.34e-19
speciesMegasphaera_micronuciformis0.2097.85e-206.07e-19
speciesBacteroides_uniformis-0.2062.01e-191.53e-18
speciesEggerthella_unclassified0.2062.08e-191.56e-18
speciesFusobacterium_nucleatum0.2052.81e-192.07e-18
speciesLactobacillus_salivarius0.2044.59e-193.33e-18
classClostridia-0.2045.81e-194.09e-18
orderClostridiales-0.2045.81e-194.09e-18
genusSutterella-0.2045.95e-194.13e-18
speciesLactococcus_garvieae0.2021.3e-188.89e-18
speciesCoprococcus_comes-0.22.31e-181.56e-17
genusEggerthella0.1994.1e-182.73e-17
speciesBifidobacterium_adolescentis-0.1985.29e-183.47e-17
speciesEnterococcus_faecalis0.1986.28e-184.06e-17
speciesClostridiales_bacterium_1_7_47FAA0.1961.36e-178.67e-17
speciesVeillonella_parvula0.1951.83e-171.15e-16
speciesFusobacterium_varium0.1942.14e-171.33e-16
orderLactobacillales0.1934.44e-172.72e-16
familyBacteroidales_noname-0.1925.45e-173.19e-16
genusBacteroidales_noname-0.1925.45e-173.19e-16
speciesBacteroidales_bacterium_ph8-0.1925.45e-173.19e-16
classBacilli0.1925.48e-173.19e-16
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1918.21e-174.73e-16
speciesWeissella_cibaria0.1882.21e-161.26e-15
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1858.07e-164.53e-15
speciesButyrivibrio_unclassified-0.1841.22e-156.77e-15
speciesClostridium_leptum-0.1822.14e-151.17e-14
speciesLactobacillus_mucosae0.184.46e-152.42e-14
genusVeillonella0.1795.54e-152.97e-14
genusFlavonifractor0.1797.41e-153.89e-14
speciesFlavonifractor_plautii0.1797.41e-153.89e-14
speciesStreptococcus_infantarius0.1787.85e-154.07e-14
speciesDorea_longicatena-0.1771.35e-146.93e-14
speciesRoseburia_hominis-0.1743.58e-141.82e-13
genusCoprobacter-0.1726.44e-143.2e-13
speciesCoprobacter_fastidiosus-0.1726.44e-143.2e-13
speciesMitsuokella_unclassified-0.1726.66e-143.27e-13
speciesClostridium_citroniae0.1718.7e-144.23e-13
speciesEnterobacter_aerogenes0.1682.38e-131.15e-12
genusRuminococcaceae_noname-0.1682.46e-131.16e-12
speciesRuminococcaceae_bacterium_D16-0.1682.46e-131.16e-12
speciesFusobacterium_mortiferum0.1682.78e-131.3e-12
speciesAnaerostipes_hadrus-0.1673.72e-131.72e-12
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1673.82e-131.75e-12
speciesCoprococcus_catus-0.1664.89e-132.22e-12
speciesStreptococcus_mitis_oralis_pneumoniae0.1665.1e-132.28e-12
genusDorea-0.1665.13e-132.28e-12
speciesAlistipes_senegalensis-0.1665.62e-132.48e-12
speciesEubacterium_hallii-0.1665.76e-132.52e-12
speciesEnterococcus_faecium0.1656.99e-133.03e-12
genusPyramidobacter0.1649.71e-134.13e-12
speciesPyramidobacter_piscolens0.1649.71e-134.13e-12
familyBacillales_noname0.1631.15e-124.8e-12
genusGemella0.1631.15e-124.8e-12
phylumSynergistetes0.1631.23e-124.96e-12
classSynergistia0.1631.23e-124.96e-12
orderSynergistales0.1631.23e-124.96e-12
familySynergistaceae0.1631.23e-124.96e-12
speciesBifidobacterium_dentium0.1631.4e-125.6e-12
genusMitsuokella-0.1622.07e-128.21e-12
speciesOscillibacter_unclassified-0.1612.25e-128.85e-12
speciesMegamonas_unclassified0.1585.64e-122.2e-11
genusMegamonas0.1585.91e-122.29e-11
familyRikenellaceae-0.1577.85e-122.99e-11
genusAlistipes-0.1577.85e-122.99e-11
speciesAlistipes_shahii-0.1578.26e-123.12e-11
familyOscillospiraceae-0.1578.56e-123.18e-11
genusOscillibacter-0.1578.56e-123.18e-11
speciesC2likevirus_unclassified-0.1561.17e-114.31e-11
genusFaecalibacterium-0.1541.89e-116.86e-11
speciesFaecalibacterium_prausnitzii-0.1541.89e-116.86e-11
familyLactobacillaceae0.1542.07e-117.46e-11
genusC2likevirus-0.1533.2e-111.14e-10
speciesAlistipes_putredinis-0.1524.05e-111.44e-10
speciesAnaerostipes_unclassified0.1524.27e-111.5e-10
genusLactobacillus0.1524.35e-111.52e-10
genusBlautia0.1514.93e-111.71e-10
phylumFirmicutes-0.1515.55e-111.91e-10
speciesLachnospiraceae_bacterium_6_1_63FAA0.1515.7e-111.95e-10
speciesVeillonella_dispar0.1499.8e-113.33e-10
genusAnaerotruncus-0.1481.16e-103.91e-10
familySutterellaceae-0.1481.18e-103.95e-10
speciesButyrivibrio_crossotus-0.1471.47e-104.89e-10
speciesRuminococcus_lactaris-0.1471.52e-105.02e-10
genusSolobacterium0.1462.18e-107.1e-10
speciesSolobacterium_moorei0.1462.18e-107.1e-10
speciesDorea_formicigenerans-0.1452.62e-108.47e-10
genusMorganella0.1453.39e-101.08e-09
speciesMorganella_morganii0.1453.39e-101.08e-09
genusOdoribacter-0.1444.17e-101.32e-09
speciesCollinsella_aerofaciens-0.1444.19e-101.32e-09
speciesStreptococcus_thermophilus-0.1435.74e-101.79e-09
genusPeptostreptococcus0.1427.16e-102.22e-09
speciesPrevotella_buccae0.1427.47e-102.3e-09
phylumVerrucomicrobia-0.1419.39e-102.79e-09
classVerrucomicrobiae-0.1419.39e-102.79e-09
orderVerrucomicrobiales-0.1419.39e-102.79e-09
familyVerrucomicrobiaceae-0.1419.39e-102.79e-09
genusAkkermansia-0.1419.39e-102.79e-09
speciesAkkermansia_muciniphila-0.1419.39e-102.79e-09
speciesVeillonella_unclassified0.141.07e-093.16e-09
orderBacillales0.141.18e-093.46e-09
classEpsilonproteobacteria0.1391.38e-094e-09
orderCampylobacterales0.1391.38e-094e-09
genusClostridiales_noname0.1391.52e-094.37e-09
genusCampylobacter0.1391.73e-094.92e-09
speciesStreptococcus_salivarius0.1391.73e-094.92e-09
orderBurkholderiales-0.1381.93e-095.45e-09
familyCampylobacteraceae0.1382.17e-096.1e-09
familyStreptococcaceae0.1372.5e-096.98e-09
speciesKlebsiella_sp_MS_92_30.1372.86e-097.94e-09
speciesCoprococcus_sp_ART55_1-0.1363.85e-091.06e-08
speciesMegasphaera_unclassified0.1354.05e-091.11e-08
speciesLactobacillus_fermentum0.1354.16e-091.13e-08
genusCollinsella-0.1354.86e-091.32e-08
familyPeptostreptococcaceae0.1355.2e-091.4e-08
classBetaproteobacteria-0.1338.03e-092.15e-08
speciesParaprevotella_xylaniphila-0.1321.05e-082.8e-08
speciesOdoribacter_splanchnicus-0.1311.23e-083.26e-08
speciesStreptococcus_lutetiensis0.1311.24e-083.27e-08
speciesClostridium_clostridioforme0.131.7e-084.46e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1292.03e-085.29e-08
genusStreptococcus0.1292.07e-085.37e-08
genusPrevotella0.1292.12e-085.47e-08
speciesEubacterium_ventriosum-0.1292.23e-085.72e-08
genusProteus0.1264.37e-081.11e-07
familyMyoviridae0.1255.5e-081.4e-07
speciesBacteroides_stercoris0.1256.5e-081.64e-07
speciesStreptococcus_gordonii0.1248.32e-082.09e-07
speciesVeillonella_atypica0.1221.11e-072.77e-07
speciesLactobacillus_sanfranciscensis0.1211.7e-074.22e-07
speciesParaprevotella_unclassified-0.121.82e-074.5e-07
genusParaprevotella-0.121.94e-074.77e-07
speciesBifidobacterium_pseudocatenulatum0.122.12e-075.18e-07
speciesRuminococcus_sp_5_1_39BFAA-0.1192.27e-075.52e-07
speciesBacteroides_plebeius0.1192.56e-076.2e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.1183.36e-078.09e-07
familyActinomycetaceae0.1173.54e-078.48e-07
speciesProteus_mirabilis0.1173.65e-078.7e-07
genusPeptostreptococcaceae_noname0.1164.64e-071.1e-06
speciesPeptostreptococcus_stomatis0.1165.27e-071.24e-06
speciesOdoribacter_unclassified-0.1156.34e-071.49e-06
speciesLeuconostoc_lactis0.1147.06e-071.65e-06
speciesStreptococcus_pasteurianus0.1147.41e-071.72e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1147.44e-071.72e-06
speciesEnterobacteria_phage_HK5440.1131.03e-062.36e-06
speciesRoseburia_intestinalis-0.1131.03e-062.36e-06
speciesStreptococcus_vestibularis0.1121.11e-062.53e-06
genusActinomyces0.1121.21e-062.75e-06
familyPorphyromonadaceae-0.1111.46e-063.3e-06
speciesMethanobrevibacter_smithii-0.111.77e-063.98e-06
speciesParaprevotella_clara-0.111.92e-064.29e-06
speciesBacteroides_intestinalis0.1092.16e-064.81e-06
genusMethanobrevibacter-0.1082.73e-066.05e-06
speciesEubacterium_eligens-0.1082.85e-066.29e-06
speciesPrevotella_copri0.1083e-066.59e-06
familyClostridiales_noname0.1073.74e-068.17e-06
speciesClostridium_bartlettii0.1063.94e-068.57e-06
phylumEuryarchaeota-0.1064.5e-069.74e-06
genusRuminococcus-0.1055.41e-061.17e-05
speciesGemella_morbillorum0.1055.66e-061.2e-05
classMethanobacteria-0.1055.7e-061.2e-05
orderMethanobacteriales-0.1055.7e-061.2e-05
familyMethanobacteriaceae-0.1055.7e-061.2e-05
speciesBlautia_hydrogenotrophica-0.1055.7e-061.2e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.1046.4e-061.34e-05
speciesMegamonas_rupellensis0.1037.41e-061.55e-05
speciesStreptococcus_australis0.1029.01e-061.87e-05
speciesAcidaminococcus_intestini0.1029.28e-061.92e-05
speciesMegamonas_hypermegale0.1029.4e-061.94e-05
speciesLactobacillus_amylovorus0.1011.15e-052.36e-05
genusAggregatibacter0.11.57e-053.21e-05
genusRoseburia-0.0991.68e-053.42e-05
speciesPorphyromonas_uenonis0.0991.8e-053.65e-05
speciesAlistipes_indistinctus-0.0991.9e-053.83e-05
speciesAlistipes_onderdonkii-0.0991.95e-053.92e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0982.25e-054.5e-05
genusLambdalikevirus0.0982.29e-054.56e-05
speciesAggregatibacter_segnis0.0972.43e-054.82e-05
familySiphoviridae-0.0972.58e-055.1e-05
familyLachnospiraceae-0.0963.33e-056.55e-05
speciesEggerthella_lenta0.0963.35e-056.56e-05
speciesRothia_mucilaginosa0.0953.81e-057.43e-05
speciesBacteroides_sp_3_1_190.0953.88e-057.54e-05
speciesHaemophilus_parainfluenzae0.0944.39e-058.49e-05
speciesBacteroides_nordii0.0944.71e-059.07e-05
genusHaemophilus0.0944.88e-059.36e-05
orderPasteurellales0.0945.02e-059.55e-05
familyPasteurellaceae0.0945.02e-059.55e-05
speciesPrevotella_stercorea0.0935.33e-050.000101
orderActinomycetales0.0936.04e-050.000114
speciesRuminococcus_obeum-0.0926.19e-050.000116
speciesParabacteroides_merdae-0.0927.08e-050.000133
speciesLactobacillus_vaginalis0.0918.46e-050.000158
genusPorphyromonas0.0918.78e-050.000163
genusAnaerostipes-0.098.92e-050.000165
familyMicrococcaceae0.099.61e-050.000177
speciesLactobacillus_crispatus0.099.8e-050.00018
genusRothia0.090.0001030.000188
speciesBlautia_producta0.0890.0001080.000197
familyVeillonellaceae0.0890.0001090.000197
speciesBacteroides_thetaiotaomicron0.0890.0001090.000197
speciesRuminococcus_champanellensis-0.0890.000120.000216
speciesLachnospiraceae_bacterium_5_1_57FAA0.0890.0001230.000221
speciesEubacterium_limosum0.0880.0001350.000241
speciesCampylobacter_concisus0.0880.0001430.000255
speciesCoprococcus_eutactus-0.0870.0001520.00027
speciesClostridium_sp_ATCC_BAA_4420.0870.0001710.000301
speciesClostridium_sp_L2_50-0.0870.0001710.000301
speciesBifidobacterium_catenulatum-0.0860.0001810.000318
speciesLactobacillus_plantarum0.0860.0001840.000322
genusPeptoniphilus0.0850.0002160.000376
genusAdlercreutzia-0.0850.0002250.000389
speciesAdlercreutzia_equolifaciens-0.0850.0002250.000389
speciesCoprobacillus_sp_29_10.0840.0002560.000441
speciesCoprobacillus_sp_D60.0840.0002650.000455
genusLeuconostoc0.0840.0002820.000482
familyPropionibacteriaceae-0.0830.0003050.00052
speciesRoseburia_unclassified-0.0830.0003070.000521
speciesStreptococcus_sanguinis0.0820.0003810.000645
speciesLactobacillus_gasseri0.080.0005220.00088
speciesLactobacillus_oris0.080.0005310.000892
genusCatenibacterium-0.080.0005510.000919
speciesCatenibacterium_mitsuokai-0.080.0005510.000919
speciesLactobacillus_acidophilus-0.080.0005580.000927
genusParvimonas0.0790.0005840.000967
speciesParvimonas_unclassified0.0790.0005950.000982
speciesAlistipes_finegoldii-0.0790.0006330.00104
speciesAlistipes_sp_HGB5-0.0790.0006590.00108
speciesParabacteroides_goldsteinii0.0790.0006590.00108
speciesMegasphaera_elsdenii0.0790.0006780.0011
speciesOlsenella_unclassified-0.0780.0007710.00125
speciesStreptococcus_mutans0.0780.0007960.00129
speciesBacteroides_pectinophilus-0.0770.0009060.00146
genusAcidaminococcaceae_unclassified-0.0750.001130.00181
genusPhascolarctobacterium-0.0750.001190.0019
speciesPhascolarctobacterium_succinatutens-0.0750.001190.0019
speciesClostridium_asparagiforme0.0740.001440.00229
orderCoriobacteriales-0.0730.001520.0024
familyCoriobacteriaceae-0.0730.001520.0024
speciesBacteroides_dorei-0.0730.001550.00244
speciesEubacterium_biforme-0.0730.001630.00256
speciesBacteroides_salyersiae0.0720.001910.00299
speciesHaemophilus_paraphrohaemolyticus0.0710.00220.00343
genusSutterellaceae_unclassified-0.070.002340.00363
speciesLactococcus_phage_936_sensu_lato-0.070.002520.0039
speciesBifidobacterium_angulatum-0.070.002570.00396
speciesPrevotella_bivia0.0690.002680.00412
speciesPorphyromonas_asaccharolytica0.0690.002840.00435
speciesAnaerotruncus_colihominis0.0690.002880.0044
speciesBifidobacterium_breve0.0680.003250.00495
speciesBacteroides_coprocola0.0670.003730.00566
speciesAcidaminococcus_fermentans0.0670.0040.00605
speciesErysipelotrichaceae_bacterium_2_2_44A0.0660.004060.00612
speciesOscillibacter_sp_KLE_1745-0.0660.00430.00646
speciesParabacteroides_sp_D13-0.0660.004390.00658
classErysipelotrichia0.0650.004940.00733
orderErysipelotrichales0.0650.004940.00733
familyErysipelotrichaceae0.0650.004940.00733
speciesBacteroides_oleiciplenus0.0630.006560.00971
genusBilophila0.0630.006750.00996
speciesMegamonas_funiformis0.0630.006780.00997
speciesBilophila_unclassified0.0620.006930.0102
speciesPropionibacterium_freudenreichii-0.0620.007040.0103
genusActinobacillus0.0620.007410.0108
speciesActinobacillus_unclassified0.0620.007410.0108
familyOxalobacteraceae-0.0620.007670.0111
speciesLactococcus_phage_P680-0.0610.008050.0116
genusOxalobacter-0.0610.008180.0117
speciesOxalobacter_formigenes-0.0610.008180.0117
speciesBifidobacterium_animalis-0.060.010.0143
speciesBacteroides_finegoldii0.0590.01030.0147
speciesOscillibacter_sp_KLE_1728-0.0580.01220.0173
speciesErysipelotrichaceae_bacterium_21_3-0.0580.01270.018
familyAcidaminococcaceae-0.0580.01280.0181
speciesRoseburia_inulinivorans-0.0570.01350.019
classDeltaproteobacteria0.0560.01460.0204
orderDesulfovibrionales0.0560.01460.0204
familyDesulfovibrionaceae0.0560.01460.0204
genusMyoviridae_noname0.0560.01540.0214
orderAeromonadales0.0560.01620.0224
genusParabacteroides-0.0560.01620.0224
genusOlsenella-0.0550.0180.0248
speciesAlistipes_unclassified-0.0550.0180.0248
speciesAlistipes_sp_AP11-0.0540.02050.0281
genusBifidobacterium-0.0530.02080.0285
orderCaudovirales-0.0530.02250.0307
speciesBilophila_wadsworthia0.0530.02290.0311
speciesRuminococcus_bromii-0.0520.02350.0319
speciesLachnospiraceae_bacterium_1_1_57FAA0.0520.0250.0338
speciesMethanobrevibacter_unclassified-0.0510.02780.0375
speciesBacteroides_xylanisolvens0.0510.02880.0387
speciesHaemophilus_sputorum0.050.02930.0393
orderBifidobacteriales-0.050.03070.0409
familyBifidobacteriaceae-0.050.03070.0409
speciesBacteroides_barnesiae-0.050.03120.0415
speciesHoldemania_unclassified-0.050.03140.0416
phylumBacteroidetes-0.0490.03240.0426
classBacteroidia-0.0490.03250.0426
orderBacteroidales-0.0490.03250.0426
genusSiphoviridae_noname-0.0490.03250.0426
speciesSubdoligranulum_sp_4_3_54A2FAA0.0490.0330.0431
speciesErysipelotrichaceae_bacterium_6_1_450.0470.04290.0559
genusPropionibacterium-0.0470.04320.056
speciesDesulfovibrio_piger-0.0470.04320.056
speciesBacteroides_cellulosilyticus-0.0470.04380.0566
speciesBacteroides_sp_1_1_6-0.0460.04550.0587
speciesHoldemania_sp_AP20.0460.04790.0616
speciesBacteroides_eggerthii0.0450.05030.0645
genusAcidaminococcus0.0450.05120.0655
genusDialister-0.0450.05290.0675
speciesLactococcus_phage_jm2-0.0440.05870.0747
classNegativicutes0.0420.06710.0848
orderSelenomonadales0.0420.06710.0848
speciesAcidaminococcus_unclassified-0.0420.06720.0848
speciesHoldemania_filiformis-0.0420.06880.0866
speciesEubacterium_dolichum0.0410.07910.0993
speciesDialister_invisus-0.040.08010.1
phylumActinobacteria-0.040.08360.104
classActinobacteria-0.040.08360.104
genusErysipelotrichaceae_noname0.0390.09230.115
speciesStreptococcus_parasanguinis0.0390.09580.119
phylumViruses_noname-0.0380.09830.121
classViruses_noname-0.0380.09830.121
speciesBifidobacterium_longum-0.0380.09910.122
speciesEubacterium_cylindroides-0.0380.1020.125
speciesCollinsella_tanakaei0.0370.1060.129
speciesBacteroides_sp_2_1_22-0.0370.1060.129
speciesBacteroides_salanitronis-0.0370.1110.135
speciesLactobacillus_ruminis-0.0360.1160.141
speciesLactobacillus_reuteri0.0350.1270.154
genusClostridiaceae_noname0.0350.1310.157
speciesClostridiaceae_bacterium_JC1180.0350.1310.157
speciesDesulfovibrio_desulfuricans-0.0350.1310.157
familyBacteroidaceae0.0350.1320.158
genusBacteroides0.0350.1320.158
genusLactococcus0.0340.1380.164
speciesPeptostreptococcus_anaerobius0.0340.1390.165
speciesLactococcus_phage_bIL67-0.0340.1440.171
genusTunalikevirus0.0330.1540.182
speciesParabacteroides_unclassified0.0330.1590.188
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0320.1610.19
genusButyricicoccus0.0320.1620.19
speciesButyricicoccus_pullicaecorum0.0320.1620.19
orderPseudomonadales0.0320.1660.194
speciesClostridium_sp_KLE_1755-0.0320.1730.202
speciesRuminococcus_torques0.030.1880.219
speciesLactococcus_phage_phi7-0.030.190.22
genusSlackia0.030.2020.234
speciesBacteroides_coprophilus0.0290.2150.248
speciesRuminococcus_sp_JC3040.0270.2410.277
speciesSutterella_parvirubra0.0270.2480.285
speciesCollinsella_intestinalis0.0260.2570.294
genusBurkholderiales_noname0.0250.2740.312
speciesBurkholderiales_bacterium_1_1_470.0250.2740.312
speciesKlebsiella_phage_KP360.0250.2790.317
speciesCoriobacteriaceae_bacterium_phI-0.0250.280.318
speciesBacteroides_vulgatus-0.0230.3110.352
familyBurkholderiales_noname0.0230.3120.352
speciesLactobacillus_rhamnosus0.0230.3180.358
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0230.330.371
speciesParabacteroides_johnsonii0.0220.3320.372
speciesParabacteroides_sp_20_3-0.0220.3470.388
genusCoriobacteriaceae_noname-0.0220.3520.393
speciesPeptostreptococcaceae_noname_unclassified-0.0210.360.401
speciesClostridium_spiroforme-0.020.380.422
genusHoldemania-0.020.3840.425
genusDesulfovibrio-0.020.3870.428
speciesErysipelotrichaceae_bacterium_3_1_530.020.3980.438
speciesDorea_unclassified-0.020.3980.438
speciesLactococcus_lactis-0.020.3990.438
speciesTuricibacter_unclassified-0.0190.4140.453
genusParasutterella0.0190.4180.456
speciesParasutterella_excrementihominis0.0190.4180.456
speciesMitsuokella_multacida-0.0170.4520.492
speciesBacteroides_clarus0.0170.4750.515
familyPrevotellaceae0.0160.4840.524
speciesBacteroides_massiliensis0.0160.4890.528
familyPodoviridae0.0160.4950.533
genusTuricibacter-0.0150.5110.549
genusMethanosphaera-0.0150.5270.564
speciesMethanosphaera_stadtmanae-0.0150.5270.564
speciesLactobacillus_casei_paracasei-0.0140.5380.575
speciesBacteroides_ovatus-0.0130.5670.604
speciesRuminococcus_callidus-0.0130.5690.605
speciesTuricibacter_sanguinis0.0110.6220.66
familyViruses_noname0.010.6670.704
genusViruses_noname0.010.6670.704
speciesSlackia_piriformis-0.0090.6910.728
speciesDialister_succinatiphilus-0.0090.7010.737
speciesBifidobacterium_bifidum0.0080.7130.748
genusGordonibacter-0.0070.7580.79
speciesGordonibacter_pamelaeae-0.0070.7580.79
speciesBacteroides_faecis-0.0070.7580.79
genusStaphylococcus-0.0070.7710.802
speciesBacteroides_fluxus0.0070.7780.807
genusLachnospiraceae_noname-0.0060.7810.808
speciesBacteroides_caccae0.0060.80.826
speciesStreptococcus_phage_Sfi210.0060.8050.83
speciesEggerthella_sp_1_3_56FAA-0.0050.8130.836
speciesCollinsella_unclassified-0.0050.8170.838
orderViruses_noname-0.0050.830.848
speciesBacteroides_sp_4_3_47FAA0.0050.830.848
genusButyricimonas-0.0030.8830.897
speciesButyricimonas_synergistica-0.0030.8830.897
speciesParabacteroides_distasonis-0.0030.8840.897
genusSuccinatimonas0.0030.9020.912
speciesSuccinatimonas_hippei0.0030.9020.912
familySuccinivibrionaceae-0.0020.9290.937
speciesEubacterium_sp_3_1_310.0020.9330.939
familyStaphylococcaceae0.0010.9520.956
speciesOdoribacter_laneus0.0010.9640.966
speciesLactobacillus_delbrueckii-0.0010.9730.973
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.00739006417990.002446623531653.05795455622e-124561.49474
Liver cirrhosisChina1201140.02243059807320.00479193748764.35886088373e-05450715.1399
Crohns diseaseSpain17660.01632094001630.003291646310670.00469926453666664122.0815
Colorectal cancerAustria64350.04631272419140.007235574758350.005498831005873661.23833
Type II diabetesChina1831850.02308451707660.01545153530640.0545403049394722923.8904
Rheumatoid arthritisChina127980.01151954712740.008988425110230.2964278063441208940.3141
ObesityDenmark1691230.003535528883180.006472363017750.3304659124021485348.8409
Ulcerative colitisSpain78660.001337302449520.003291646310670.3503980641521550.1913
Type II diabetesSweden53920.006255127936660.007506147042540.8362797269072520285.3437
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382