MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-12-15 16:26:15 PST
Job id & description: 2317, nicb
Query type: protein
Count queries & homologs: 1, 3
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
nicB4185538CompleteunknownNOG133988unknownunknown75.32100.034.03
nicB4560493CompleteunknownNOG133988unknownunknown75.098.5535.29
nicB4101610CompleteunknownNOG133988unknownunknown75.32100.030.68
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusEnterobacter0.3752.25e-631.06e-60
speciesKlebsiella_pneumoniae0.371.11e-612.62e-59
speciesEnterobacter_cloacae0.3691.79e-612.82e-59
genusKlebsiella0.3521.4e-551.65e-53
speciesCitrobacter_freundii0.316.57e-436.2e-41
genusCitrobacter0.3042.52e-411.98e-39
speciesCitrobacter_unclassified0.2916.17e-384.16e-36
speciesEnterobacter_aerogenes0.2781.25e-347.38e-33
classGammaproteobacteria0.2723.99e-332.09e-31
orderEnterobacteriales0.2692.14e-329.18e-31
familyEnterobacteriaceae0.2692.14e-329.18e-31
genusWeissella0.2545.69e-292.24e-27
speciesWeissella_confusa0.2471.98e-277.19e-26
speciesWeissella_cibaria0.2449.23e-273.11e-25
speciesLactococcus_garvieae0.2341.39e-244.37e-23
phylumProteobacteria0.238.36e-242.47e-22
genusEscherichia0.2231.35e-223.75e-21
speciesEnterobacteria_phage_HK5440.226.23e-221.63e-20
speciesEscherichia_unclassified0.2164.14e-211.03e-19
speciesEscherichia_coli0.2141.01e-202.38e-19
speciesKlebsiella_oxytoca0.214.95e-201.11e-18
speciesKlebsiella_sp_MS_92_30.191.11e-162.38e-15
familyLeuconostocaceae0.1831.29e-152.65e-14
familyFusobacteriaceae0.1822.34e-154.6e-14
genusFusobacterium0.184.48e-158.46e-14
speciesSubdoligranulum_unclassified-0.1789e-151.63e-13
phylumFusobacteria0.1771.39e-142.26e-13
classFusobacteriia0.1771.39e-142.26e-13
orderFusobacteriales0.1771.39e-142.26e-13
genusSubdoligranulum-0.1761.71e-142.69e-13
speciesHaemophilus_parainfluenzae0.1682.9e-134.42e-12
genusHaemophilus0.1673.54e-135.22e-12
speciesFusobacterium_mortiferum0.1664.37e-136.25e-12
orderPasteurellales0.1665.68e-137.66e-12
familyPasteurellaceae0.1665.68e-137.66e-12
speciesMegamonas_unclassified0.1631.35e-121.77e-11
genusMegamonas0.1621.74e-122.22e-11
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1594.34e-125.39e-11
speciesVeillonella_parvula0.1577.52e-129.1e-11
speciesEubacterium_siraeum-0.1551.46e-111.72e-10
speciesLactobacillus_salivarius0.1532.98e-113.43e-10
genusVeillonella0.1471.65e-101.85e-09
speciesKlebsiella_unclassified0.1462.07e-102.27e-09
speciesAnaerotruncus_unclassified-0.1453.03e-103.25e-09
genusPantoea0.1453.17e-103.25e-09
speciesPantoea_unclassified0.1453.17e-103.25e-09
familyViruses_noname0.1435.37e-105.28e-09
genusViruses_noname0.1435.37e-105.28e-09
genusPrevotella0.1418.27e-107.97e-09
phylumVerrucomicrobia-0.1391.44e-091.24e-08
classVerrucomicrobiae-0.1391.44e-091.24e-08
orderVerrucomicrobiales-0.1391.44e-091.24e-08
familyVerrucomicrobiaceae-0.1391.44e-091.24e-08
genusAkkermansia-0.1391.44e-091.24e-08
speciesAkkermansia_muciniphila-0.1391.44e-091.24e-08
familyMyoviridae0.1382.34e-091.97e-08
speciesPrevotella_stercorea0.1372.63e-092.18e-08
genusC2likevirus-0.1372.94e-092.39e-08
speciesMegasphaera_micronuciformis0.1372.99e-092.39e-08
speciesC2likevirus_unclassified-0.1363.44e-092.71e-08
speciesStreptococcus_thermophilus-0.1363.69e-092.86e-08
speciesClostridium_nexile0.1354.89e-093.72e-08
speciesPrevotella_buccae0.1345.68e-094.26e-08
speciesLeuconostoc_lactis0.1346.56e-094.84e-08
genusDorea-0.1338.13e-095.9e-08
speciesVeillonella_unclassified0.1321.03e-087.37e-08
genusButyrivibrio-0.131.6e-081.13e-07
speciesStreptococcus_infantarius0.1273.27e-082.26e-07
speciesPrevotella_copri0.1273.3e-082.26e-07
speciesVeillonella_dispar0.1273.41e-082.3e-07
speciesBacteroides_plebeius0.1273.68e-082.45e-07
speciesCampylobacter_concisus0.1264.22e-082.77e-07
speciesBacteroides_stercoris0.1264.51e-082.92e-07
speciesBifidobacterium_adolescentis-0.1264.63e-082.95e-07
genusMegasphaera0.1255.41e-083.38e-07
speciesEubacterium_ramulus-0.1255.45e-083.38e-07
genusPseudoflavonifractor-0.1255.84e-083.53e-07
speciesPseudoflavonifractor_capillosus-0.1255.84e-083.53e-07
genusCampylobacter0.1247.85e-084.69e-07
speciesDorea_longicatena-0.1238.72e-085.14e-07
genusEnterococcus0.1239.38e-085.47e-07
familyCampylobacteraceae0.1221.19e-076.85e-07
familyEnterococcaceae0.1221.34e-077.62e-07
genusProteus0.1211.47e-078.26e-07
speciesLachnospiraceae_bacterium_3_1_46FAA-0.122.01e-071.12e-06
speciesAnaerostipes_hadrus-0.1174e-072.2e-06
speciesFusobacterium_varium0.1164.46e-072.42e-06
genusCoprococcus-0.1164.78e-072.56e-06
orderCoriobacteriales-0.1164.95e-072.6e-06
familyCoriobacteriaceae-0.1164.95e-072.6e-06
genusAnaerotruncus-0.1156.34e-073.29e-06
speciesClostridium_leptum-0.1147.8e-073.97e-06
classEpsilonproteobacteria0.1147.91e-073.97e-06
orderCampylobacterales0.1147.91e-073.97e-06
speciesEubacterium_hallii-0.1111.41e-067.01e-06
genusAnaerostipes-0.1111.53e-067.52e-06
speciesVeillonella_atypica0.1111.58e-067.69e-06
speciesClostridium_perfringens0.111.72e-068.28e-06
speciesButyrivibrio_unclassified-0.1092.32e-061.11e-05
speciesErysipelotrichaceae_bacterium_21_3-0.1092.43e-061.15e-05
speciesCoprococcus_catus-0.1073.69e-061.72e-05
speciesFusobacterium_nucleatum0.1055.43e-062.51e-05
speciesMegamonas_hypermegale0.1046.73e-063.08e-05
speciesRuminococcus_gnavus0.1047.26e-063.29e-05
speciesMitsuokella_unclassified-0.1038.01e-063.6e-05
speciesStreptococcus_salivarius0.1038.16e-063.63e-05
speciesEubacterium_rectale-0.1038.68e-063.81e-05
speciesProteus_mirabilis0.1038.72e-063.81e-05
familyRuminococcaceae-0.1029.23e-064e-05
speciesFusobacterium_ulcerans0.1021.04e-054.46e-05
genusCoprobacter-0.1011.13e-054.76e-05
speciesCoprobacter_fastidiosus-0.1011.13e-054.76e-05
speciesCoprococcus_comes-0.1011.14e-054.76e-05
speciesAggregatibacter_segnis0.11.52e-056.29e-05
speciesClostridiales_bacterium_1_7_47FAA0.0991.79e-057.35e-05
speciesMegamonas_rupellensis0.0982.28e-059.28e-05
orderLactobacillales0.0982.37e-059.48e-05
familyBacteroidales_noname-0.0972.41e-059.48e-05
genusBacteroidales_noname-0.0972.41e-059.48e-05
speciesBacteroidales_bacterium_ph8-0.0972.41e-059.48e-05
familyPeptostreptococcaceae0.0972.53e-059.87e-05
classBacilli0.0972.58e-059.98e-05
genusBarnesiella-0.0972.82e-050.000107
speciesBarnesiella_intestinihominis-0.0972.82e-050.000107
genusPeptostreptococcaceae_noname0.0962.99e-050.000113
speciesBacteroides_uniformis-0.0963.1e-050.000116
speciesLactobacillus_mucosae0.0963.19e-050.000119
speciesStreptococcus_anginosus0.0953.7e-050.000136
speciesBacteroides_fragilis0.0944.4e-050.000161
genusMitsuokella-0.0944.45e-050.000162
speciesEnterococcus_faecalis0.0944.71e-050.000166
genusCollinsella-0.0944.73e-050.000166
speciesCollinsella_aerofaciens-0.0944.74e-050.000166
classClostridia-0.0944.75e-050.000166
orderClostridiales-0.0944.75e-050.000166
speciesBifidobacterium_dentium0.0945.06e-050.000176
phylumActinobacteria-0.090.0001040.000356
classActinobacteria-0.090.0001040.000356
familyStreptococcaceae0.0890.0001220.000414
speciesHaemophilus_sputorum0.0880.0001450.000489
genusAdlercreutzia-0.0870.0001590.000529
speciesAdlercreutzia_equolifaciens-0.0870.0001590.000529
familyVeillonellaceae0.0850.0002150.00071
familySiphoviridae-0.0850.0002230.000731
speciesStreptococcus_australis0.0850.0002340.000762
speciesDorea_formicigenerans-0.0830.0003160.00102
familyPrevotellaceae0.0820.0003570.00115
speciesStreptococcus_mitis_oralis_pneumoniae0.0820.0004040.00129
genusSutterella-0.0810.0004290.00135
speciesClostridium_bartlettii0.0810.0004290.00135
speciesMethanobrevibacter_smithii-0.0810.0004650.00145
genusStreptococcus0.0810.0004920.00152
genusAggregatibacter0.080.0004940.00152
speciesLactobacillus_plantarum0.080.0005140.00158
familyOscillospiraceae-0.080.0005720.00173
genusOscillibacter-0.080.0005720.00173
genusRuminococcaceae_noname-0.0790.0006020.0018
speciesRuminococcaceae_bacterium_D16-0.0790.0006020.0018
speciesBacteroides_oleiciplenus0.0790.0006240.00185
familyPorphyromonadaceae-0.0790.0006290.00186
speciesClostridium_bolteae0.0790.0006450.00189
familyEubacteriaceae-0.0790.0006730.00196
genusEubacterium-0.0780.0006870.00198
speciesBifidobacterium_catenulatum-0.0780.0006870.00198
genusFlavonifractor0.0780.0007320.00208
speciesFlavonifractor_plautii0.0780.0007320.00208
genusLambdalikevirus0.0780.0007420.0021
speciesBlautia_hydrogenotrophica-0.0780.000780.00219
phylumEuryarchaeota-0.0780.000790.00221
speciesOscillibacter_unclassified-0.0770.0008030.00223
speciesEnterococcus_faecium0.0770.0008710.0024
speciesRoseburia_unclassified-0.0770.0009050.00248
speciesBacteroides_massiliensis0.0770.000930.00254
speciesSutterella_wadsworthensis-0.0750.001120.00304
genusMyoviridae_noname0.0750.001130.00305
speciesLactococcus_phage_P680-0.0750.001150.00308
genusTunalikevirus0.0750.001190.00317
speciesBacteroides_intestinalis0.0740.001360.00361
speciesClostridium_hathewayi0.0740.001390.00367
orderBifidobacteriales-0.0730.001580.00411
familyBifidobacteriaceae-0.0730.001580.00411
classMethanobacteria-0.0730.001610.00411
orderMethanobacteriales-0.0730.001610.00411
familyMethanobacteriaceae-0.0730.001610.00411
genusBifidobacterium-0.0730.001610.00411
speciesStreptococcus_lutetiensis0.0720.001790.00454
genusClostridiales_noname0.0720.001860.00469
speciesRuminococcus_sp_5_1_39BFAA-0.0720.001960.00492
genusPyramidobacter0.0710.0020.00497
speciesPyramidobacter_piscolens0.0710.0020.00497
genusMethanobrevibacter-0.070.002330.00576
phylumSynergistetes0.070.002440.00591
classSynergistia0.070.002440.00591
orderSynergistales0.070.002440.00591
familySynergistaceae0.070.002440.00591
genusAcidaminococcaceae_unclassified-0.070.002490.006
speciesMegamonas_funiformis0.0690.00280.00671
orderAeromonadales0.0680.003060.00729
familyRikenellaceae-0.0670.003690.00871
genusAlistipes-0.0670.003690.00871
genusBurkholderiales_noname0.0670.003790.00886
speciesBurkholderiales_bacterium_1_1_470.0670.003790.00886
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0670.003970.00923
familyBurkholderiales_noname0.0660.004270.00988
speciesBifidobacterium_pseudocatenulatum0.0660.004340.00999
speciesLachnospiraceae_bacterium_6_1_63FAA0.0650.004650.0107
speciesAlistipes_onderdonkii-0.0650.004830.011
speciesBifidobacterium_longum-0.0650.005020.0114
speciesPropionibacterium_freudenreichii-0.0650.005070.0114
speciesLactobacillus_fermentum0.0640.005330.0119
speciesBacteroides_salyersiae0.0640.005330.0119
speciesStreptococcus_pasteurianus0.0640.00540.012
speciesBifidobacterium_animalis-0.0630.006090.0135
speciesStreptococcus_gordonii0.0630.006140.0135
speciesBacteroides_thetaiotaomicron0.0630.00630.0138
classNegativicutes0.0630.006410.0139
orderSelenomonadales0.0630.006410.0139
genusErysipelotrichaceae_noname-0.0630.006670.0144
genusLactococcus0.0630.006680.0144
speciesBacteroides_nordii0.0620.00690.0148
speciesDialister_invisus-0.0620.007590.0162
speciesAcidaminococcus_unclassified-0.0610.008060.0171
familyBacillales_noname0.0610.008190.0173
genusGemella0.0610.008190.0173
phylumFirmicutes-0.0610.00830.0174
speciesCoprococcus_eutactus-0.0610.008330.0174
speciesAlistipes_sp_HGB5-0.060.010.0208
speciesOlsenella_unclassified-0.0590.01010.0209
speciesButyrivibrio_crossotus-0.0590.01020.021
genusSiphoviridae_noname-0.0590.01030.0211
speciesLactobacillus_sanfranciscensis0.0590.01050.0214
speciesBacteroides_coprocola0.0590.01050.0214
speciesOdoribacter_unclassified-0.0590.01060.0215
genusRuminococcus-0.0590.01070.0216
speciesPeptostreptococcus_stomatis0.0590.0110.022
speciesAlistipes_sp_AP11-0.0590.0110.022
genusOdoribacter-0.0580.01140.0227
genusDialister-0.0580.01150.0228
speciesAlistipes_indistinctus-0.0580.01180.0233
familyPropionibacteriaceae-0.0580.0120.0236
genusLactobacillus0.0580.01220.0238
speciesOscillibacter_sp_KLE_1745-0.0580.01220.0238
genusSolobacterium0.0580.01230.0238
speciesSolobacterium_moorei0.0580.01230.0238
genusGordonibacter-0.0580.01250.024
speciesGordonibacter_pamelaeae-0.0580.01250.024
speciesStreptococcus_vestibularis0.0580.01260.0241
speciesKlebsiella_phage_KP360.0570.01370.026
genusMorganella0.0570.01380.026
speciesMorganella_morganii0.0570.01380.026
speciesStreptococcus_sanguinis0.0570.01380.026
speciesErysipelotrichaceae_bacterium_6_1_45-0.0570.01410.0264
familyLactobacillaceae0.0570.01450.0271
speciesLactobacillus_oris0.0560.01580.0294
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0550.01650.0305
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0550.01660.0306
speciesRuminococcus_torques-0.0550.01710.0314
speciesLactobacillus_delbrueckii-0.0550.01820.0333
genusActinobacillus0.0550.01840.0334
speciesActinobacillus_unclassified0.0550.01840.0334
speciesMegasphaera_unclassified0.0540.01930.0349
speciesClostridium_symbiosum0.0540.01940.0349
speciesRuminococcus_callidus0.0540.02010.0361
speciesLactobacillus_casei_paracasei-0.0540.02050.0367
speciesRoseburia_inulinivorans0.0530.02140.0381
speciesAlistipes_unclassified-0.0520.02380.0422
speciesParabacteroides_unclassified-0.0520.02460.0435
speciesLactobacillus_rhamnosus-0.0520.0250.044
speciesStreptococcus_parasanguinis0.0520.02510.044
genusPropionibacterium-0.0510.02890.0505
speciesClostridium_citroniae0.050.03120.0541
classErysipelotrichia-0.050.03140.0541
orderErysipelotrichales-0.050.03140.0541
familyErysipelotrichaceae-0.050.03140.0541
genusParasutterella0.050.03190.0546
speciesParasutterella_excrementihominis0.050.03190.0546
genusClostridium0.0490.03250.0553
speciesOdoribacter_splanchnicus-0.0490.03260.0553
speciesHoldemania_unclassified-0.0490.03310.056
orderBacillales0.0490.03340.0563
genusRoseburia0.0490.03440.0578
genusOlsenella-0.0490.03470.0581
speciesRothia_mucilaginosa0.0480.03720.062
familyClostridiaceae0.0480.03750.0623
speciesEggerthella_lenta-0.0480.03810.0631
genusCoprobacillus0.0480.03850.0635
speciesBacteroides_sp_2_1_22-0.0470.04010.0659
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0460.04550.0746
genusLeuconostoc0.0460.04710.0769
speciesLachnospiraceae_bacterium_1_1_57FAA0.0460.04820.0784
familyLachnospiraceae-0.0450.050.081
speciesLactococcus_phage_phi7-0.0450.05010.081
familyAcidaminococcaceae-0.0450.0530.0854
speciesCoprobacillus_unclassified0.0450.05320.0854
speciesEubacterium_biforme-0.0440.05450.0872
speciesLactobacillus_crispatus0.0440.05670.0904
speciesOscillibacter_sp_KLE_1728-0.0440.05970.0949
speciesLactobacillus_vaginalis0.0430.06040.0957
speciesClostridium_spiroforme-0.0420.06720.106
speciesGemella_morbillorum0.0420.07250.114
speciesCoprococcus_sp_ART55_1-0.0420.07260.114
genusParabacteroides-0.0410.07460.117
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0410.07860.122
speciesRuminococcus_bromii-0.040.08060.125
speciesParaprevotella_xylaniphila-0.040.08140.126
speciesAlistipes_senegalensis-0.040.08150.126
speciesLactococcus_phage_936_sensu_lato-0.040.08540.131
speciesLachnospiraceae_bacterium_2_1_46FAA0.040.08650.133
speciesCollinsella_tanakaei0.0390.08910.136
speciesBacteroides_dorei-0.0390.08950.136
speciesClostridium_sp_ATCC_BAA_4420.0390.09180.139
speciesPeptostreptococcus_anaerobius-0.0390.09280.14
genusAcidaminococcus-0.0390.0940.142
familyOxalobacteraceae-0.0380.09880.149
familyClostridiales_noname0.0380.1030.154
speciesCollinsella_unclassified-0.0370.1050.157
speciesTuricibacter_sanguinis-0.0370.1060.158
speciesRoseburia_hominis-0.0370.1080.16
speciesBacteroides_pectinophilus-0.0370.1090.161
genusOxalobacter-0.0370.110.161
speciesBacteroides_sp_4_3_47FAA0.0370.110.161
speciesOxalobacter_formigenes-0.0370.110.161
speciesHaemophilus_paraphrohaemolyticus0.0370.1140.167
speciesBacteroides_finegoldii0.0360.1150.168
speciesLactococcus_phage_jm2-0.0360.1160.168
genusParaprevotella-0.0350.1310.189
speciesLactococcus_phage_bIL67-0.0350.1310.189
speciesMethanobrevibacter_unclassified-0.0350.1310.189
speciesBifidobacterium_angulatum-0.0350.1320.189
genusRothia0.0350.1330.19
familyMicrococcaceae0.0350.1340.191
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0350.1350.192
speciesAlistipes_finegoldii-0.0340.1370.194
speciesParaprevotella_clara-0.0340.1430.202
genusHoldemania-0.0340.1440.203
speciesSutterella_parvirubra-0.0330.1480.207
speciesClostridium_asparagiforme0.0330.1480.207
genusCatenibacterium-0.0330.1490.207
speciesCatenibacterium_mitsuokai-0.0330.1490.207
speciesRuminococcus_obeum-0.0330.1490.207
speciesBacteroides_fluxus0.0330.1580.219
orderCaudovirales-0.0320.1610.222
speciesParaprevotella_unclassified-0.0320.1620.223
speciesEggerthella_sp_1_3_56FAA-0.0320.1680.23
speciesBacteroides_sp_1_1_6-0.0320.1680.23
familyPodoviridae0.030.20.273
speciesBilophila_unclassified0.0290.2030.276
genusPeptostreptococcus0.0290.2050.277
speciesPeptostreptococcaceae_noname_unclassified0.0290.2050.277
speciesLactobacillus_reuteri0.0290.2060.278
speciesDorea_unclassified-0.0290.2110.284
phylumBacteroidetes0.0290.2130.284
classBacteroidia0.0290.2130.284
orderBacteroidales0.0290.2130.284
speciesBacteroides_cellulosilyticus-0.0290.2160.287
speciesBacteroides_ovatus0.0290.2180.289
orderPseudomonadales0.0280.2210.292
speciesOdoribacter_laneus-0.0280.2330.307
orderViruses_noname0.0280.2340.308
genusBilophila0.0270.2370.31
speciesAlistipes_shahii-0.0270.2370.31
speciesParabacteroides_johnsonii0.0270.2380.31
speciesLactobacillus_acidophilus-0.0270.2410.313
genusLachnospiraceae_noname-0.0260.2530.328
genusTuricibacter-0.0260.2540.328
speciesHoldemania_filiformis-0.0260.2540.328
speciesLactobacillus_gasseri0.0260.2550.328
speciesBacteroides_xylanisolvens0.0260.2570.328
genusFaecalibacterium0.0260.2580.328
speciesRoseburia_intestinalis0.0260.2580.328
speciesFaecalibacterium_prausnitzii0.0260.2580.328
speciesCoriobacteriaceae_bacterium_phI-0.0260.2670.339
speciesEubacterium_ventriosum-0.0250.2750.348
speciesStreptococcus_phage_Sfi21-0.0250.2870.362
speciesClostridium_ramosum0.0240.2940.37
speciesBacteroides_faecis0.0240.2970.373
speciesClostridium_sp_KLE_1755-0.0240.3030.379
familyActinomycetaceae0.0240.3070.383
speciesEubacterium_cylindroides-0.0230.3110.387
speciesErysipelotrichaceae_bacterium_3_1_53-0.0230.3120.388
speciesParabacteroides_goldsteinii0.0230.3130.388
speciesLactobacillus_amylovorus0.0230.3260.403
speciesTuricibacter_unclassified-0.0230.3310.407
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0220.3310.407
speciesBilophila_wadsworthia0.0220.3320.407
familyClostridiales_Family_XI_Incertae_Sedis0.0220.3330.407
speciesEubacterium_limosum-0.0220.3390.413
speciesEubacterium_eligens0.0220.3510.427
familyBacteroidaceae0.0210.3550.43
genusBacteroides0.0210.3550.43
speciesParabacteroides_sp_20_3-0.0210.3570.431
speciesPrevotella_bivia0.0210.3610.435
speciesParabacteroides_sp_D13-0.0210.3660.44
speciesDesulfovibrio_desulfuricans-0.020.3760.45
genusCoriobacteriaceae_noname-0.020.3850.46
speciesLachnospiraceae_bacterium_1_4_56FAA0.0190.40.477
speciesBacteroides_salanitronis-0.0190.4020.478
genusPorphyromonas0.0190.410.486
speciesClostridium_sp_L2_50-0.0190.4140.49
speciesRuminococcus_lactaris-0.0190.4190.494
speciesClostridium_clostridioforme-0.0180.4250.5
speciesBacteroides_sp_3_1_190.0180.4390.515
genusActinomyces0.0180.4410.517
speciesParabacteroides_distasonis0.0170.4750.555
speciesCoprobacillus_sp_29_10.0160.480.559
speciesMegasphaera_elsdenii0.0160.4850.564
speciesMitsuokella_multacida-0.0150.5060.587
speciesAlistipes_putredinis-0.0150.510.59
orderActinomycetales0.0150.5150.594
speciesDialister_succinatiphilus0.0150.5250.604
genusPhascolarctobacterium-0.0140.540.619
speciesPhascolarctobacterium_succinatutens-0.0140.540.619
speciesEggerthella_unclassified0.0140.5450.622
speciesBifidobacterium_bifidum-0.0140.5460.622
genusButyricicoccus-0.0130.5670.643
speciesButyricicoccus_pullicaecorum-0.0130.5670.643
speciesAcidaminococcus_intestini-0.0130.570.645
classDeltaproteobacteria0.0130.5780.65
orderDesulfovibrionales0.0130.5780.65
familyDesulfovibrionaceae0.0130.5780.65
speciesStreptococcus_mutans0.0130.5870.658
speciesParabacteroides_merdae0.0120.590.66
speciesAnaerostipes_unclassified0.0120.6030.673
genusDesulfovibrio-0.0120.6080.677
speciesRuminococcus_champanellensis-0.0120.6130.681
speciesEubacterium_dolichum0.0110.6320.7
speciesLactococcus_lactis-0.0110.650.718
speciesRuminococcus_sp_JC304-0.010.6510.718
genusClostridiaceae_noname-0.0090.690.757
speciesClostridiaceae_bacterium_JC118-0.0090.690.757
speciesBacteroides_coprophilus0.0090.6920.758
familyStaphylococcaceae-0.0090.7060.771
speciesHoldemania_sp_AP2-0.0090.7070.771
genusMethanosphaera-0.0080.7290.791
speciesMethanosphaera_stadtmanae-0.0080.7290.791
familySuccinivibrionaceae-0.0080.740.801
speciesLactobacillus_ruminis-0.0070.7490.809
speciesDesulfovibrio_piger-0.0070.7690.829
genusSuccinatimonas-0.0070.7730.829
speciesSuccinatimonas_hippei-0.0070.7730.829
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0060.7910.847
speciesAcidaminococcus_fermentans0.0060.7990.853
speciesBacteroides_barnesiae0.0060.8020.855
genusStaphylococcus-0.0050.8130.864
speciesCollinsella_intestinalis-0.0050.8190.866
phylumViruses_noname0.0050.8220.866
classViruses_noname0.0050.8220.866
familySutterellaceae-0.0050.8220.866
genusBlautia-0.0050.830.873
speciesBacteroides_eggerthii0.0050.8420.883
genusEggerthella0.0040.8480.887
classBetaproteobacteria0.0040.8520.89
speciesEubacterium_sp_3_1_31-0.0040.8630.899
genusSlackia0.0040.8680.901
genusSutterellaceae_unclassified0.0040.8690.901
orderBurkholderiales0.0030.8810.912
speciesBlautia_producta0.0030.8850.912
genusParvimonas-0.0030.8860.912
speciesParvimonas_unclassified-0.0030.8890.912
speciesBacteroides_clarus-0.0030.8890.912
speciesBacteroides_caccae-0.0030.8910.912
speciesPorphyromonas_uenonis-0.0030.9070.927
speciesBacteroides_vulgatus0.0020.920.938
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0020.9220.938
speciesBifidobacterium_breve0.0020.9250.939
speciesCoprobacillus_sp_D60.0020.9430.955
speciesPorphyromonas_asaccharolytica0.0020.9470.957
speciesSlackia_piriformis-0.0010.960.968
speciesAnaerotruncus_colihominis0.0010.9730.979
genusPeptoniphilus0.0010.9810.985
genusButyricimonas0.00.9910.991
speciesButyricimonas_synergistica0.00.9910.991
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.0002561216029640.0006013431002390.00508167678428939.56079
Liver cirrhosisChina1201140.0006052812406740.0001281496654330.01196337835761116437.5021
Ulcerative colitisSpain78660.00.0001068420274620.132879001832832727.4692
Type II diabetesDenmark752770.01.03288297665e-050.1539983110551154837.8536
Colorectal cancerAustria64350.07.78153896677e-060.183150203157784926.5564
Crohns diseaseSpain17660.00.0001068420274620.4833870058552283275.9169
Rheumatoid arthritisChina127980.000153421492160.0001936578965190.4870511905051738257.9651
ObesityDenmark1691235.72290116263e-061.68435529502e-050.9059103040492849993.7128
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382